Query psy2445
Match_columns 654
No_of_seqs 180 out of 199
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 16:29:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13965 SID-1_RNA_chan: dsRNA 100.0 3E-152 6E-157 1276.3 42.3 511 99-652 1-565 (570)
2 PF13965 SID-1_RNA_chan: dsRNA 99.9 8.5E-27 1.8E-31 263.1 10.5 331 1-426 64-424 (570)
3 PF05875 Ceramidase: Ceramidas 97.0 0.018 3.9E-07 60.1 15.6 80 308-404 7-86 (262)
4 PF03006 HlyIII: Haemolysin-II 84.6 45 0.00098 33.2 16.4 25 369-393 39-63 (222)
5 KOG2329|consensus 81.1 9.4 0.0002 40.5 9.4 83 308-408 15-99 (276)
6 COG1272 Predicted membrane pro 79.4 55 0.0012 34.0 14.3 83 366-475 50-137 (226)
7 PRK15087 hemolysin; Provisiona 76.6 95 0.0021 31.9 17.0 27 370-396 50-76 (219)
8 PF04080 Per1: Per1-like ; In 73.2 1E+02 0.0022 32.9 14.5 30 374-403 89-118 (267)
9 PF12036 DUF3522: Protein of u 53.2 2.1E+02 0.0045 28.7 11.8 45 382-426 38-89 (186)
10 COG4858 Uncharacterized membra 50.2 50 0.0011 33.5 6.7 48 541-588 129-179 (226)
11 PF15050 SCIMP: SCIMP protein 34.7 17 0.00037 34.1 0.7 33 454-486 7-39 (133)
12 PRK13592 ubiA prenyltransferas 32.2 4.2E+02 0.009 28.9 10.8 11 416-426 5-16 (299)
13 TIGR01065 hlyIII channel prote 31.5 5.5E+02 0.012 25.8 15.5 28 368-395 33-60 (204)
14 PLN02776 prenyltransferase 29.0 2.5E+02 0.0055 31.0 8.7 23 541-565 101-123 (341)
15 PF06570 DUF1129: Protein of u 28.4 3.7E+02 0.008 27.1 9.3 22 568-589 144-165 (206)
16 PF10777 YlaC: Inner membrane 28.3 1.1E+02 0.0023 30.0 5.0 77 421-509 33-110 (155)
17 COG3125 CyoD Heme/copper-type 26.2 3.2E+02 0.0069 25.5 7.4 51 539-589 48-98 (111)
18 PF05832 DUF846: Eukaryotic pr 26.1 2E+02 0.0043 27.8 6.5 50 420-477 1-50 (142)
19 KOG2970|consensus 25.4 9.2E+02 0.02 26.4 15.4 21 384-404 151-171 (319)
20 PRK10582 cytochrome o ubiquino 25.0 2.3E+02 0.0051 26.2 6.4 40 540-579 47-86 (109)
21 TIGR02901 QoxD cytochrome aa3 24.5 3.8E+02 0.0082 24.2 7.5 41 539-579 37-77 (94)
22 PF05019 Coq4: Coenzyme Q (ubi 23.8 29 0.00063 35.9 0.3 15 615-629 120-134 (222)
23 PF01810 LysE: LysE type trans 23.5 6.7E+02 0.015 24.2 9.9 80 514-593 104-190 (191)
24 PF15345 TMEM51: Transmembrane 20.7 85 0.0018 32.8 2.9 26 370-396 6-31 (233)
No 1
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=100.00 E-value=2.7e-152 Score=1276.29 Aligned_cols=511 Identities=47% Similarity=0.849 Sum_probs=455.2
Q ss_pred CCC-ccccccCCCCCceEEEEeecCcceEEEEeeeccCCCcccccccce-eeeEEEEEeeeeeeEEEeeecC-CCeEEEE
Q psy2445 99 SEP-IFYNFQFDHMTESVLLVVESSDELCMTLSVQNISCPVVDLERNVQ-YRGQWQTVSSKGGMLLKKSDFP-LGLFIVF 175 (654)
Q Consensus 99 SeP-~y~~y~Fpe~~dsV~v~v~Sdd~~C~~vSVQd~sCPV~Dl~~~v~-~~g~yQT~tk~agitv~k~~fp-~~F~vVf 175 (654)
||| +|+.|+|||++|+|+|||+|||++|++|||||++|||+|++++++ ..|+||||||+|||+++|+++| ++||||+
T Consensus 1 SeP~~yf~y~fP~~vdsV~I~V~Sd~~~Ca~VSvQ~~~CPVfDl~~~v~~~~g~~QT~T~~a~itv~r~~f~~~~F~Vvv 80 (570)
T PF13965_consen 1 SEPVYYFYYSFPEGVDSVIIRVTSDDDICAVVSVQNASCPVFDLEGNVESFNGFYQTMTKKAGITVQRKDFPSGSFYVVV 80 (570)
T ss_pred CCCeeeEeecCCCCCcEEEEEEEcCCCceeEEEEecCCCCccCCcccccccccEEEEEeccccEEEEhhhCCCCeEEEEE
Confidence 799 566999999999999999999999999999999999999999996 9999999999999999999999 8999999
Q ss_pred EEecCCCCCCCCCCCCccCceeeEEEEEeeccCchhHHHHHHHHHHHHHHHHHHhhee--eeee-c--cc---C---CCC
Q psy2445 176 VVHSDDYDCSGHKGSFQFKRNKAISFSIEKNISDENYLIASLALLSIFAGIYVVAFFI--GIKC-I--RC---C---PSM 244 (654)
Q Consensus 176 vVkp~D~~C~g~~~~~~~~R~K~vt~sV~~~is~~~Yv~a~l~~l~if~s~~l~~~~~--~~r~-~--r~---~---~~e 244 (654)
||||||++|+|+....++||+|..+++|++. +..+|..+++++++++++|+++.+.+ ++++ + ++ + .+|
T Consensus 81 vV~pdD~~C~~~~~~~~~~~~k~~tv~v~~~-~~~sy~~~~~~~l~~~lsf~ll~~~~~~~~~~~~~~~~~~s~~ii~s~ 159 (570)
T PF13965_consen 81 VVKPDDSACSGNPSNKSFNRTKKKTVEVTIV-PSISYVVYMLAMLGIFLSFYLLFIVFVFHYRRSRRQRNPSSEDIISSE 159 (570)
T ss_pred EECCCCCcCCCCCCCCCccccceEEEEEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhccC
Confidence 9999999999999777788888888888884 67779989899999998888663222 2222 1 11 0 112
Q ss_pred CCCCC----------CCCCCCCCCcccCCCCcccccccchhhhhhccc--ceeeEEecC----CCC--------------
Q psy2445 245 YIPSP----------ADILSPEEPTRYGIPHHFGFFYSMGMALIMEGV--LSACYHVCP----SHS-------------- 294 (654)
Q Consensus 245 ~s~s~----------~d~~ss~~~~~y~~P~~~glf~s~~~~~~~e~v--~k~~L~V~~----~~~-------------- 294 (654)
++++. .+++++++|+| . +++..++++ .|..++|+| +++
T Consensus 160 P~~S~~~~~~~~~~~~~~~ss~~e~d--~----------~~~~~d~~v~~~~~~~~v~~l~~~~~~~~~~~~~~y~~~~~ 227 (570)
T PF13965_consen 160 PEPSEQTQNSSDSDESDEDSSEEEYD--D----------TDADNDINVIRTKPELIVSDLSRKEKRQLKKKSKSYFWNLL 227 (570)
T ss_pred CCCccccccccCcccccccccccccc--c----------hhcccchhhcccccceeHHhHhhCCchhhhHHHHHHHHHHH
Confidence 22111 11122222222 1 112222233 455666665 111
Q ss_pred ---------ceeEeeccccccccC-CCccccccccccccCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCcc
Q psy2445 295 ---------NFQFGSRKPKVLNDS-GNEDMCYYNYLCSHPFWNLSDINHIFSNIGYVFLGFLFILITVNRERASLPNNKR 364 (654)
Q Consensus 295 ---------~~q~~~~~~~~~~~~-~n~D~Cy~N~~Ca~~~~~~~~fN~~~Sn~gy~~~G~lfl~iv~~r~~~~~~~~~~ 364 (654)
+.|++++||+.++.+ ||||+|||||+||||+|+|+|||||+||+||+++|++||++++|||+++.. +++
T Consensus 228 ~~~iFy~LPv~qlv~~~q~~~~~t~gn~D~CyyNf~Cs~p~~~~~~FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~-~~~ 306 (570)
T PF13965_consen 228 TIAIFYILPVLQLVITYQKVLNQTAGNQDMCYYNFLCSHPLGGFSAFNNVFSNIGYVLLGLLFLIIVFRRKIFHRQ-PTS 306 (570)
T ss_pred HHHHHHhhhHHHHHHHHhhhccCCCCCCceeeeehhhhcccccccchhhhHhhHHHHHHHHHHHHHHHHhhhhccc-ccc
Confidence 799999999999997 999999999999999999999999999999999999999999999988655 678
Q ss_pred cCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCcceeechhHHHHHHHHHHHHhhhhcCCCcccchhHHHHHHHHHHHHH
Q psy2445 365 YGIPHHFGFFYSMGMALIMEGVLSACYHVCPSHSNFQFDTSFMYVIAMLSLLKIYQSRHPDINATAYSTFVALAFVIFVG 444 (654)
Q Consensus 365 ~Gi~~~~~~~~~~g~ali~egi~sa~yh~CP~~~~fqfdtsfmyvi~~L~~~~iyq~RH~di~a~a~~~f~~~a~~i~~~ 444 (654)
||||||+|++||||+||+|||++|||||+|||++||||||+||||||+|||+||||+|||||+|+||.+|+++|++++++
T Consensus 307 ~gi~~~~~~~~~~g~~li~egi~sa~yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~RH~di~a~a~~~f~~~av~i~~~ 386 (570)
T PF13965_consen 307 YGIPQHYGLFYAMGLALIMEGILSACYHICPNRSNFQFDTSFMYVIAGLCMLKIYQKRHPDINASAYAAFAVFAVVIFLG 386 (570)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccchhhhhHHHHHHHHHHHHHhhheeeeeeeccccceeeEecchhhcccCCCCcccCCCCccceehhhHHHHHH
Q psy2445 445 MVGVLDETLTFYVIFTVIHVLVCMVLSAQIYYMGRWKLDARVFHRVCGVCIADIRSGPRHCCRPMYPSRLVLLIFGNLFN 524 (654)
Q Consensus 445 ~~gv~~~~~~fwiiF~ii~~~~~~~ls~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~v~l~~~n~~n 524 (654)
++|+..++.+||++|+++|+++++++|+|+||||+||+ ++|++++++ |++|
T Consensus 387 ~~gv~~~~~~f~iiF~ii~i~~~~~ls~q~Yy~g~~~~----------------------------~~r~~~l~~-~i~N 437 (570)
T PF13965_consen 387 LIGVLEKSSIFWIIFSIIHILSCFFLSLQIYYMGRWKL----------------------------KSRFFLLVL-NIIN 437 (570)
T ss_pred hhhheeccceehhHHHHHHHHHHHHHHhhheeeeeccc----------------------------cchhhhhhH-HHHH
Confidence 99999999999999999999999999999999999973 478888777 9999
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHhHHHHHHHHhhhhhccCcchhhHHHHHHHHHHHHHHHHHHhhhccccccccCchh
Q psy2445 525 WALAAAQLRYHMVNFGTYFLAVFMVNLCLYLMFYITMKYLSGEKIMAHTGLYLAASILLWTGALYFFFNKSISWAGTPAE 604 (654)
Q Consensus 525 ~~~~~~g~~~~~~dfat~~L~i~i~Nl~lY~~fYi~mKi~~~Eri~~~~~~~~~~~~~~W~~a~yfF~~~~t~w~~TpA~ 604 (654)
|+++++|+..+|+||++|+|+++++|++||++|||+||+++|||+++++++++++++++|++|+|||++++|+|++||||
T Consensus 438 ~~~~~~gl~~~~~df~~~~l~i~i~n~~lY~~fYiimKi~~~E~i~~~~~~~~~~~~~~W~~a~yff~~~~t~w~~tpA~ 517 (570)
T PF13965_consen 438 WALAIYGLISSPRDFASFLLAIFIGNLLLYLFFYIIMKIRHREKILLKPIIYLVLAFVSWGFALYFFFQNTTDWTLTPAE 517 (570)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHhccCCccccChHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCeeeccccccchhhHHHhhHHHHHHHhhhheecCCCcccccc
Q psy2445 605 SRTYNRPCLVLNFYDHHDVWHVLSALAMFFSFMCLLALDDDGTYFFRV 652 (654)
Q Consensus 605 SR~lN~~Cill~f~D~HDiWH~lSA~alf~sf~~ll~lDddL~~~~r~ 652 (654)
|||+||||+++||||+||||||+||+||||+|++|+||||||++|||.
T Consensus 518 SR~lN~~Cil~~f~D~HDiwH~~SA~alffsf~~l~~lDddL~~vpr~ 565 (570)
T PF13965_consen 518 SRELNKECILLGFFDWHDIWHFLSAIALFFSFLVLLTLDDDLDNVPRD 565 (570)
T ss_pred HHhcCCCCcCcCccccHHHHHHHHHHHHHHHHHHHHHhccccccCccc
Confidence 999999999999999999999999999999999999999999999996
No 2
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=99.93 E-value=8.5e-27 Score=263.06 Aligned_cols=331 Identities=27% Similarity=0.409 Sum_probs=187.6
Q ss_pred CccccccCC-CCceEEEEEeCCCCcCCCCCCCCccc--ceeeEEEEEecccCchhhHHHHHHHHHHHHHHHhhheeee--
Q psy2445 1 MLLKKSDFP-LGLFIVFVVHSDDYDCSGHKGSFQFK--RNKAISFSIEKNISDENYLIASLALLSIFAGIYVVAFFIG-- 75 (654)
Q Consensus 1 itvqr~~fp-~gffvV~VVk~~D~~C~g~~~~~~~~--R~K~~~~~I~~sis~~~Yv~a~v~tl~if~~fy~l~~~~~-- 75 (654)
||+|||+|| ++||||+||||||++|+|+....+.+ |+|+++|++.|+++ |..++++++++++++|++.+..+
T Consensus 64 itv~r~~f~~~~F~VvvvV~pdD~~C~~~~~~~~~~~~k~~tv~v~~~~~~s---y~~~~~~~l~~~lsf~ll~~~~~~~ 140 (570)
T PF13965_consen 64 ITVQRKDFPSGSFYVVVVVKPDDSACSGNPSNKSFNRTKKKTVEVTIVPSIS---YVVYMLAMLGIFLSFYLLFIVFVFH 140 (570)
T ss_pred EEEEhhhCCCCeEEEEEEECCCCCcCCCCCCCCCccccceEEEEEEecCchh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999 56889999999999999998544444 55555556655555 55555666666666666655422
Q ss_pred eeeeeeecccccccCcc-ccccCCCCCccccccCCCCCceEEEEe------ecCcc---eEEEEeeeccCCCcccccccc
Q psy2445 76 IKCIRCCPSMYMLSDQR-HLMASPSEPIFYNFQFDHMTESVLLVV------ESSDE---LCMTLSVQNISCPVVDLERNV 145 (654)
Q Consensus 76 ~~~~~~~~~f~l~~~~~-~~~~SPSeP~y~~y~Fpe~~dsV~v~v------~Sdd~---~C~~vSVQd~sCPV~Dl~~~v 145 (654)
+.++++.+. ..+.+- +.+.+||+++...-.-++..++..++. +.|.+ ....+.|+|++..-.+..++.
T Consensus 141 ~~~~~~~~~--~~s~~ii~s~P~~S~~~~~~~~~~~~~~~ss~~e~d~~~~~~d~~v~~~~~~~~v~~l~~~~~~~~~~~ 218 (570)
T PF13965_consen 141 YRRSRRQRN--PSSEDIISSEPEPSEQTQNSSDSDESDEDSSEEEYDDTDADNDINVIRTKPELIVSDLSRKEKRQLKKK 218 (570)
T ss_pred HHHHhhhcc--CcchhhhccCCCCccccccccCccccccccccccccchhcccchhhcccccceeHHhHhhCCchhhhHH
Confidence 222222111 111111 333344444332222222111122221 11111 133577888876665444443
Q ss_pred eeeeE--------------EEEEeeeeeeEEEe-eecCCCeEEEEEEecCCCCCCCCCCCCccCceeeEEEEEeeccCch
Q psy2445 146 QYRGQ--------------WQTVSSKGGMLLKK-SDFPLGLFIVFVVHSDDYDCSGHKGSFQFKRNKAISFSIEKNISDE 210 (654)
Q Consensus 146 ~~~g~--------------yQT~tk~agitv~k-~~fp~~F~vVfvVkp~D~~C~g~~~~~~~~R~K~vt~sV~~~is~~ 210 (654)
..... -|++.+.+.++.+. ++.+.|+| |+.|..+... .++.
T Consensus 219 ~~~y~~~~~~~~iFy~LPv~qlv~~~q~~~~~t~gn~D~Cyy--------Nf~Cs~p~~~----------------~~~F 274 (570)
T PF13965_consen 219 SKSYFWNLLTIAIFYILPVLQLVITYQKVLNQTAGNQDMCYY--------NFLCSHPLGG----------------FSAF 274 (570)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhccCCCCCCceeee--------ehhhhccccc----------------ccch
Confidence 22221 27777777777775 88899999 9999988731 1222
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeeeecccCCCCCCCCCCCCCCCCCCcccCCCCcccccccchhhhhhcccceeeEEec
Q psy2445 211 NYLIASLALLSIFAGIYVVAFFIGIKCIRCCPSMYIPSPADILSPEEPTRYGIPHHFGFFYSMGMALIMEGVLSACYHVC 290 (654)
Q Consensus 211 ~Yv~a~l~~l~if~s~~l~~~~~~~r~~r~~~~e~s~s~~d~~ss~~~~~y~~P~~~glf~s~~~~~~~e~v~k~~L~V~ 290 (654)
+.+ +++.+++.+|++++-...+|+... ..+.++|+|+|+|++++||.++.+||+++++||+|
T Consensus 275 N~v------~Sn~gy~~lG~lfliiv~~r~~~~------------~~~~~~gi~~~~~~~~~~g~~li~egi~sa~yh~C 336 (570)
T PF13965_consen 275 NNV------FSNIGYVLLGLLFLIIVFRRKIFH------------RQPTSYGIPQHYGLFYAMGLALIMEGILSACYHIC 336 (570)
T ss_pred hhh------HhhHHHHHHHHHHHHHHHHhhhhc------------cccccCCCCccchhHHHHHHHHHHHHHHHHHhhcC
Confidence 222 344444444433331111111110 01346899999999999999999999999999999
Q ss_pred CCCCceeEeeccccccccCCCccccccccccccCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCcccCCCcc
Q psy2445 291 PSHSNFQFGSRKPKVLNDSGNEDMCYYNYLCSHPFWNLSDINHIFSNIGYVFLGFLFILITVNRERASLPNNKRYGIPHH 370 (654)
Q Consensus 291 ~~~~~~q~~~~~~~~~~~~~n~D~Cy~N~~Ca~~~~~~~~fN~~~Sn~gy~~~G~lfl~iv~~r~~~~~~~~~~~Gi~~~ 370 (654)
|++.+|||++++- |++.|++.+-+-..|+ ++. ..+.
T Consensus 337 Pn~~~fqfdt~fm------------------------------------yvi~~L~~lkiyq~RH--~di------~a~a 372 (570)
T PF13965_consen 337 PNRSNFQFDTSFM------------------------------------YVIAGLCMLKIYQKRH--PDI------NASA 372 (570)
T ss_pred cCchhhHHHHHHH------------------------------------HHHHHHHHHHHHHhhC--CCC------chhH
Confidence 9999999999553 6777777776655443 222 1334
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccCCCCcceeechhHHHHHHHHHHHHhhhhcCCCc
Q psy2445 371 FGFFYSMGMALIMEGVLSACYHVCPSHSNFQFDTSFMYVIAMLSLLKIYQSRHPDI 426 (654)
Q Consensus 371 ~~~~~~~g~ali~egi~sa~yh~CP~~~~fqfdtsfmyvi~~L~~~~iyq~RH~di 426 (654)
|..+..+++ .+.-|+.+..++.=.=..- |-..++.+.+.++. ++|-.++--+
T Consensus 373 ~~~f~~~av-~i~~~~~gv~~~~~~f~ii--F~ii~i~~~~~ls~-q~Yy~g~~~~ 424 (570)
T PF13965_consen 373 YAAFAVFAV-VIFLGLIGVLEKSSIFWII--FSIIHILSCFFLSL-QIYYMGRWKL 424 (570)
T ss_pred HHHHHHHHH-HHHHHhhhheeccceehhH--HHHHHHHHHHHHHh-hheeeeeccc
Confidence 455555554 3344666554432111111 22333333333444 7777766544
No 3
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.05 E-value=0.018 Score=60.13 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=61.5
Q ss_pred cCCCccccccccccccCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCcccCCCcchhhHHHHHHHHHHHHHh
Q psy2445 308 DSGNEDMCYYNYLCSHPFWNLSDINHIFSNIGYVFLGFLFILITVNRERASLPNNKRYGIPHHFGFFYSMGMALIMEGVL 387 (654)
Q Consensus 308 ~~~n~D~Cy~N~~Ca~~~~~~~~fN~~~Sn~gy~~~G~lfl~iv~~r~~~~~~~~~~~Gi~~~~~~~~~~g~ali~egi~ 387 (654)
.|+.-|=|==||..++= ...|=|.+||+.++++|+.-+....| .+.+.++ ..+.++++.-|+-
T Consensus 7 ~ts~~dwCE~nY~~s~y---iAEf~NtlSNl~fi~~al~gl~~~~~-----------~~~~~~~---~l~~~~l~~VGiG 69 (262)
T PF05875_consen 7 PTSTIDWCEENYVVSPY---IAEFWNTLSNLAFIVAALYGLYLARR-----------RGLERRF---ALLYLGLALVGIG 69 (262)
T ss_pred CCcccccchhccccCcc---cchHHHHHHHHHHHHHHHHHHHHHhh-----------ccccchh---HHHHHHHHHHHHh
Confidence 46778899999998853 56677899999999999998877655 1333333 4445566677999
Q ss_pred hhhhccCCCCcceeech
Q psy2445 388 SACYHVCPSHSNFQFDT 404 (654)
Q Consensus 388 sa~yh~CP~~~~fqfdt 404 (654)
|+.||.=++...=..|-
T Consensus 70 S~~FHaTl~~~~ql~De 86 (262)
T PF05875_consen 70 SFLFHATLSYWTQLLDE 86 (262)
T ss_pred HHHHHhChhhhHHHhhh
Confidence 99999999888777884
No 4
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=84.65 E-value=45 Score=33.22 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=20.6
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhcc
Q psy2445 369 HHFGFFYSMGMALIMEGVLSACYHV 393 (654)
Q Consensus 369 ~~~~~~~~~g~ali~egi~sa~yh~ 393 (654)
.+..+....+++.+.-=+.|++||.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~St~yH~ 63 (222)
T PF03006_consen 39 WDYIPFLIYLLSAILCFLCSTLYHL 63 (222)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhC
Confidence 3466777888888888899999999
No 5
>KOG2329|consensus
Probab=81.13 E-value=9.4 Score=40.54 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=61.6
Q ss_pred cCCCccccccccccccCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhc-CCCCCcccCCCcchhhHHHHHHHHHHHHH
Q psy2445 308 DSGNEDMCYYNYLCSHPFWNLSDINHIFSNIGYVFLGFLFILITVNRERA-SLPNNKRYGIPHHFGFFYSMGMALIMEGV 386 (654)
Q Consensus 308 ~~~n~D~Cy~N~~Ca~~~~~~~~fN~~~Sn~gy~~~G~lfl~iv~~r~~~-~~~~~~~~Gi~~~~~~~~~~g~ali~egi 386 (654)
.+...|-|=.||.=+. ...+|-|-.||+..+++ +++....+-+++ +. =++..+++++.-|+
T Consensus 15 ~tS~~dWCE~NY~~s~---yIAEf~NT~sN~~fil~--~~~~l~~~y~~~~e~-------------~~~l~~v~~~ivgl 76 (276)
T KOG2329|consen 15 TTSTVDWCEENYAVSP---YIAEFANTESNSPFILL--AFIGLHCAYRQKLEK-------------RAYLICVLFTIVGL 76 (276)
T ss_pred cCchhhhhhhchhhhH---HHHHHHHHhhcchHHHH--HHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHH
Confidence 4677899988887554 36789999999999998 343333322222 21 36889999999999
Q ss_pred hhhhhccCCCCcceeec-hhHHH
Q psy2445 387 LSACYHVCPSHSNFQFD-TSFMY 408 (654)
Q Consensus 387 ~sa~yh~CP~~~~fqfd-tsfmy 408 (654)
.|-+||.=++.--=+-| .++.|
T Consensus 77 ~S~~fH~TL~~~~QllDElamiw 99 (276)
T KOG2329|consen 77 GSMYFHMTLVYKGQLLDELAMIW 99 (276)
T ss_pred HHhhhhhhHHHhheehhhhhHHH
Confidence 99999999987766677 67777
No 6
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=79.44 E-value=55 Score=34.01 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=50.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhhhccCCCCcc----ee-echhHHHHHHHHHHHHhhhhcCCCcccchhHHHHHHHHH
Q psy2445 366 GIPHHFGFFYSMGMALIMEGVLSACYHVCPSHSN----FQ-FDTSFMYVIAMLSLLKIYQSRHPDINATAYSTFVALAFV 440 (654)
Q Consensus 366 Gi~~~~~~~~~~g~ali~egi~sa~yh~CP~~~~----fq-fdtsfmyvi~~L~~~~iyq~RH~di~a~a~~~f~~~a~~ 440 (654)
|-+.+.-..-..|+++++.=..|++||.=|++.. +| ||=+-+|+. +|.-|..+...++
T Consensus 50 ~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vL----------------IAgSyTP~~l~~l- 112 (226)
T COG1272 50 GSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVL----------------IAGSYTPFLLVGL- 112 (226)
T ss_pred CChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHH----------------HHHhhHHHhHHHh-
Confidence 4455566777889999999999999999998611 11 554333332 2334444432221
Q ss_pred HHHHhhccccccchhhhhHHHHHHHHHHHHHhhhe
Q psy2445 441 IFVGMVGVLDETLTFYVIFTVIHVLVCMVLSAQIY 475 (654)
Q Consensus 441 i~~~~~gv~~~~~~fwiiF~ii~~~~~~~ls~~~y 475 (654)
. +...|+++.++..++..-...++-
T Consensus 113 --------~--~~~~~~~~~iiW~lal~Gi~~kl~ 137 (226)
T COG1272 113 --------Y--GPLGWILLGLIWGLALAGILFKLF 137 (226)
T ss_pred --------c--cchHHHHHHHHHHHHHHHHhhhhh
Confidence 1 346778888877777555555544
No 7
>PRK15087 hemolysin; Provisional
Probab=76.57 E-value=95 Score=31.85 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccCCC
Q psy2445 370 HFGFFYSMGMALIMEGVLSACYHVCPS 396 (654)
Q Consensus 370 ~~~~~~~~g~ali~egi~sa~yh~CP~ 396 (654)
+.......|++++..=..|++||.-++
T Consensus 50 ~~~~~~vy~~s~~~l~~~StlYH~~~~ 76 (219)
T PRK15087 50 AITSYSLYGGSMILLFLASTLYHAIPH 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 444567889999999999999998874
No 8
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=73.17 E-value=1e+02 Score=32.93 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCcceeec
Q psy2445 374 FYSMGMALIMEGVLSACYHVCPSHSNFQFD 403 (654)
Q Consensus 374 ~~~~g~ali~egi~sa~yh~CP~~~~fqfd 403 (654)
+.+.++.=+.-=+.|+.+|..-...|-..|
T Consensus 89 ~~~~~~v~~naW~wStvFH~RD~~~TE~lD 118 (267)
T PF04080_consen 89 YIIYAIVSMNAWIWSTVFHTRDTPLTEKLD 118 (267)
T ss_pred eehHHHHHHHHHHHHHHHHHhcccHhhHhH
Confidence 444454445556889999999999998888
No 9
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=53.17 E-value=2.1e+02 Score=28.71 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHhhhhhccCCCCc-c-----eeech-hHHHHHHHHHHHHhhhhcCCCc
Q psy2445 382 IMEGVLSACYHVCPSHS-N-----FQFDT-SFMYVIAMLSLLKIYQSRHPDI 426 (654)
Q Consensus 382 i~egi~sa~yh~CP~~~-~-----fqfdt-sfmyvi~~L~~~~iyq~RH~di 426 (654)
..-++.|+.||.|-... + .+.|. .|+-.++.++.++.+--.=.++
T Consensus 38 ~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~vtl~~~a~~ 89 (186)
T PF12036_consen 38 TFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWVTLCAMARL 89 (186)
T ss_pred HHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35688999999997222 1 11121 2445555555555555444433
No 10
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=50.18 E-value=50 Score=33.52 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhcc---CcchhhHHHHHHHHHHHHHHHHH
Q psy2445 541 TYFLAVFMVNLCLYLMFYITMKYLS---GEKIMAHTGLYLAASILLWTGAL 588 (654)
Q Consensus 541 t~~L~i~i~Nl~lY~~fYi~mKi~~---~Eri~~~~~~~~~~~~~~W~~a~ 588 (654)
+-+|.-+.+-+.+|.+||-+...+- .....|+-+...+++.++|++..
T Consensus 129 tlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~ 179 (226)
T COG4858 129 TLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVM 179 (226)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHH
Confidence 4445558889999999999888764 33457788888999999998776
No 11
>PF15050 SCIMP: SCIMP protein
Probab=34.66 E-value=17 Score=34.12 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=28.1
Q ss_pred hhhhhHHHHHHHHHHHHHhhheeeeeeeccccc
Q psy2445 454 TFYVIFTVIHVLVCMVLSAQIYYMGRWKLDARV 486 (654)
Q Consensus 454 ~fwiiF~ii~~~~~~~ls~~~yy~g~~~~~~~~ 486 (654)
-||||.++.-+++++.|++-+|..=||++..|-
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 489999888888889999999977789888884
No 12
>PRK13592 ubiA prenyltransferase; Provisional
Probab=32.16 E-value=4.2e+02 Score=28.87 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=7.3
Q ss_pred HHhhhh-cCCCc
Q psy2445 416 LKIYQS-RHPDI 426 (654)
Q Consensus 416 ~~iyq~-RH~di 426 (654)
+++||+ |.|-+
T Consensus 5 ~~iy~~e~~p~~ 16 (299)
T PRK13592 5 LNVYLKEMYPLL 16 (299)
T ss_pred HHHHHHHhccch
Confidence 578887 55655
No 13
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=31.53 E-value=5.5e+02 Score=25.82 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=22.7
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhhccCC
Q psy2445 368 PHHFGFFYSMGMALIMEGVLSACYHVCP 395 (654)
Q Consensus 368 ~~~~~~~~~~g~ali~egi~sa~yh~CP 395 (654)
+.+...+...++++++.=..|+.||.=+
T Consensus 33 ~~~~~~~~vy~~~~~~~~~~St~yH~~~ 60 (204)
T TIGR01065 33 AVAVLGFSIYGISLILLFLVSTLYHSIP 60 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 4466677888889999999999999655
No 14
>PLN02776 prenyltransferase
Probab=29.02 E-value=2.5e+02 Score=31.00 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhcc
Q psy2445 541 TYFLAVFMVNLCLYLMFYITMKYLS 565 (654)
Q Consensus 541 t~~L~i~i~Nl~lY~~fYi~mKi~~ 565 (654)
+..|+ ..++++|.+.|-.+|=++
T Consensus 101 ~~~l~--~~~~~ly~~vYt~lKR~t 123 (341)
T PLN02776 101 TAGLG--AGNILLYAFVYTPLKQIH 123 (341)
T ss_pred HHHHH--HHHHHHHHHHHHhHccCC
Confidence 44444 889999999999888544
No 15
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.39 E-value=3.7e+02 Score=27.08 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q psy2445 568 KIMAHTGLYLAASILLWTGALY 589 (654)
Q Consensus 568 ri~~~~~~~~~~~~~~W~~a~y 589 (654)
+..++.++.+++++++|..+..
T Consensus 144 ~~~~k~~~~~~~~~~~w~~~~~ 165 (206)
T PF06570_consen 144 PSWWKYILISVLAMVLWIVIFV 165 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888899976655
No 16
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=28.29 E-value=1.1e+02 Score=30.03 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=41.0
Q ss_pred hcCCCcccchhHHHHHHHHHHHHH-hhccccccchhhhhHHHHHHHHHHHHHhhheeeeeeeccccceeeEecchhhccc
Q psy2445 421 SRHPDINATAYSTFVALAFVIFVG-MVGVLDETLTFYVIFTVIHVLVCMVLSAQIYYMGRWKLDARVFHRVCGVCIADIR 499 (654)
Q Consensus 421 ~RH~di~a~a~~~f~~~a~~i~~~-~~gv~~~~~~fwiiF~ii~~~~~~~ls~~~yy~g~~~~~~~~~~~~~~~~~~~~~ 499 (654)
+.||-.-..-+.+|+..++++.-+ .+| -.++ +.|++.++...+++.+.+...=|+. |=+.. =.+.|=
T Consensus 33 ~~HP~L~~~M~~~y~~~~~lm~~spy~G----~~s~-~~ftv~fv~m~~~llfDI~P~YrfE-DIdvL------DLRVCY 100 (155)
T PF10777_consen 33 RNHPYLCLAMYAAYLAVAALMYYSPYFG----LGSV-WGFTVFFVVMAAFLLFDIKPRYRFE-DIDVL------DLRVCY 100 (155)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhcchhh----hHHH-HHHHHHHHHHHHHHHhhccceeeec-ccCee------EEeEEE
Confidence 568865544555555444444332 222 1122 4688888888888888887643331 22211 023345
Q ss_pred CCCCcccCCC
Q psy2445 500 SGPRHCCRPM 509 (654)
Q Consensus 500 ~~~~~~~~p~ 509 (654)
+|+|...|+.
T Consensus 101 NGEWy~tr~v 110 (155)
T PF10777_consen 101 NGEWYNTRFV 110 (155)
T ss_pred cceeeeeccC
Confidence 6676555554
No 17
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=26.25 E-value=3.2e+02 Score=25.53 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhhhccCcchhhHHHHHHHHHHHHHHHHHH
Q psy2445 539 FGTYFLAVFMVNLCLYLMFYITMKYLSGEKIMAHTGLYLAASILLWTGALY 589 (654)
Q Consensus 539 fat~~L~i~i~Nl~lY~~fYi~mKi~~~Eri~~~~~~~~~~~~~~W~~a~y 589 (654)
-...+++....|.++=+.|...|+-...||+.....++.+.-.+.-..+.+
T Consensus 48 ~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~ 98 (111)
T COG3125 48 TLIIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSI 98 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHH
Confidence 344566777999999999999999998899988777665555554444444
No 18
>PF05832 DUF846: Eukaryotic protein of unknown function (DUF846); InterPro: IPR008564 This family consists of a number of conserved eukaryotic proteins of unknown function.; GO: 0016021 integral to membrane
Probab=26.11 E-value=2e+02 Score=27.77 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=31.4
Q ss_pred hhcCCCcccchhHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHhhheee
Q psy2445 420 QSRHPDINATAYSTFVALAFVIFVGMVGVLDETLTFYVIFTVIHVLVCMVLSAQIYYM 477 (654)
Q Consensus 420 q~RH~di~a~a~~~f~~~a~~i~~~~~gv~~~~~~fwiiF~ii~~~~~~~ls~~~yy~ 477 (654)
|.+||.+ ...|-.|-..|++..+- |..+. -=|.+.++...+.++...|..
T Consensus 1 ~s~hP~~-~~fhl~fK~~ai~~y~~--~~~f~-----~~fi~~fv~~illla~DFw~v 50 (142)
T PF05832_consen 1 KSSHPVA-CFFHLFFKIAAILVYLF--GGLFS-----DSFIIIFVITILLLAIDFWTV 50 (142)
T ss_pred CCCchHH-HHHHHHHHHHHHHHHHH--HHHhh-----cchHHHHHHHHHHHHHHHHHH
Confidence 6789976 34777777777766432 21110 015556667778888888875
No 19
>KOG2970|consensus
Probab=25.37 E-value=9.2e+02 Score=26.40 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=13.9
Q ss_pred HHHhhhhhccCCCCcceeech
Q psy2445 384 EGVLSACYHVCPSHSNFQFDT 404 (654)
Q Consensus 384 egi~sa~yh~CP~~~~fqfdt 404 (654)
-=+.|+..|+=-..-+-..|=
T Consensus 151 awiwSsvFH~rD~~lTEklDY 171 (319)
T KOG2970|consen 151 AWIWSSVFHIRDVPLTEKLDY 171 (319)
T ss_pred HHHHHHhhhhcCCchHhhhhH
Confidence 346677788866666666663
No 20
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=24.99 E-value=2.3e+02 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhHHHHHHHHhhhhhccCcchhhHHHHHHHH
Q psy2445 540 GTYFLAVFMVNLCLYLMFYITMKYLSGEKIMAHTGLYLAA 579 (654)
Q Consensus 540 at~~L~i~i~Nl~lY~~fYi~mKi~~~Eri~~~~~~~~~~ 579 (654)
...+++....|.+..+.|...|+-...+|+...+.++.+.
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~ 86 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVL 86 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHH
Confidence 3445556789999999999999988878887777765554
No 21
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=24.47 E-value=3.8e+02 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhhhccCcchhhHHHHHHHH
Q psy2445 539 FGTYFLAVFMVNLCLYLMFYITMKYLSGEKIMAHTGLYLAA 579 (654)
Q Consensus 539 fat~~L~i~i~Nl~lY~~fYi~mKi~~~Eri~~~~~~~~~~ 579 (654)
-...+++....|.++.+.|...|+-..++|......++.+.
T Consensus 37 ~~~~i~~lA~iQi~VqL~~FLHm~~~~~~~~n~~~l~ft~~ 77 (94)
T TIGR02901 37 GLTIIIIFAFIQAGLQLIMFMHAGESEDGKVQIYNIYYSAF 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHheeecCCcccchHHHHHHHHHH
Confidence 45566667799999999999999987767776665544433
No 22
>PF05019 Coq4: Coenzyme Q (ubiquinone) biosynthesis protein Coq4; InterPro: IPR007715 Coenzyme Q biosynthesis Coq4p (also known as Ubiquinone biosynthesis protein COQ4) was shown to peripherally associate with the matrix face of the mitochondrial inner membrane. The putative mitochondrial- targeting sequence present at the N terminus of the polypeptide efficiently imports it to mitochondria. The function of Coq4p is unknown, although its presence is required to maintain a steady-state level of Coq7p, another component of the Q biosynthetic pathway [].; GO: 0006744 ubiquinone biosynthetic process; PDB: 3MSQ_D 3KB4_B.
Probab=23.84 E-value=29 Score=35.86 Aligned_cols=15 Identities=40% Similarity=1.061 Sum_probs=11.4
Q ss_pred ccccccchhhHHHhh
Q psy2445 615 LNFYDHHDVWHVLSA 629 (654)
Q Consensus 615 l~f~D~HDiWH~lSA 629 (654)
...-+.||+||.+-.
T Consensus 120 ~R~re~HDi~HvLtG 134 (222)
T PF05019_consen 120 QRYRETHDIWHVLTG 134 (222)
T ss_dssp HHHHHCHHHHHHHHT
T ss_pred HHHHcCcchhhHhcC
Confidence 455689999998643
No 23
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=23.51 E-value=6.7e+02 Score=24.23 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred eehhhHHHHHHHHH--HHHHhhhc----ccchhHHHHHHHHHhHHHHHHH-HhhhhhccCcchhhHHHHHHHHHHHHHHH
Q psy2445 514 LVLLIFGNLFNWAL--AAAQLRYH----MVNFGTYFLAVFMVNLCLYLMF-YITMKYLSGEKIMAHTGLYLAASILLWTG 586 (654)
Q Consensus 514 ~v~l~~~n~~n~~~--~~~g~~~~----~~dfat~~L~i~i~Nl~lY~~f-Yi~mKi~~~Eri~~~~~~~~~~~~~~W~~ 586 (654)
-+.+-+.|.-.|.. ++.+-... +.++..+.++++.+-+.-+..+ +...|++.+-+.....++-.+++.++.++
T Consensus 104 g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~ 183 (191)
T PF01810_consen 104 GFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGF 183 (191)
T ss_pred HHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34455556555544 33333333 2336666677666655433333 33444443222222337788888899999
Q ss_pred HHHhhhc
Q psy2445 587 ALYFFFN 593 (654)
Q Consensus 587 a~yfF~~ 593 (654)
|.++..+
T Consensus 184 av~l~~~ 190 (191)
T PF01810_consen 184 AVYLLYS 190 (191)
T ss_pred HHHHHHc
Confidence 9888754
No 24
>PF15345 TMEM51: Transmembrane protein 51
Probab=20.67 E-value=85 Score=32.77 Aligned_cols=26 Identities=15% Similarity=0.661 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccCCC
Q psy2445 370 HFGFFYSMGMALIMEGVLSACYHVCPS 396 (654)
Q Consensus 370 ~~~~~~~~g~ali~egi~sa~yh~CP~ 396 (654)
||+| .|+|++|++-||.-|...+=|.
T Consensus 6 hYAL-~AiG~Gml~LGiiM~vW~~VPg 31 (233)
T PF15345_consen 6 HYAL-TAIGVGMLALGIIMIVWNLVPG 31 (233)
T ss_pred hHHH-HHHhHhHHHHhhHheeeeeccc
Confidence 5554 6999999999999999988874
Done!