Query psy2445
Match_columns 654
No_of_seqs 180 out of 199
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 16:30:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 16.7 3.1E+02 0.01 27.8 7.8 55 539-593 83-138 (306)
2 3msq_A Putative ubiquinone bio 14.4 39 0.0013 33.4 0.2 13 616-628 121-133 (224)
3 1df6_A Cycloviolacin O1; cycli 12.4 55 0.0019 22.5 0.4 11 313-323 20-30 (30)
4 1twf_K B13.6, DNA-directed RNA 11.3 1.7E+02 0.0059 26.1 3.5 35 100-134 4-38 (120)
5 3kb4_A ALR8543 protein; alpha- 9.5 75 0.0026 31.5 0.5 15 615-629 114-128 (225)
6 2jwa_A Receptor tyrosine-prote 8.1 2.6E+02 0.0088 20.9 2.7 19 339-357 23-41 (44)
7 1w2y_A Deoxyuridine 5'-triphos 6.8 1.5E+02 0.0052 29.2 1.3 14 620-633 75-88 (229)
8 3h90_A Ferrous-iron efflux pum 5.9 6.6E+02 0.023 24.7 5.6 33 539-571 74-106 (283)
9 3q8j_A Asteropsin A, ABU8-1; c 4.3 2.1E+02 0.0072 19.9 0.3 11 307-317 25-36 (37)
10 2knc_B Integrin beta-3; transm 3.7 5.8E+02 0.02 21.0 2.7 14 339-352 20-33 (79)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=16.69 E-value=3.1e+02 Score=27.78 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhhhccCcchhhHHH-HHHHHHHHHHHHHHHhhhc
Q psy2445 539 FGTYFLAVFMVNLCLYLMFYITMKYLSGEKIMAHTG-LYLAASILLWTGALYFFFN 593 (654)
Q Consensus 539 fat~~L~i~i~Nl~lY~~fYi~mKi~~~Eri~~~~~-~~~~~~~~~W~~a~yfF~~ 593 (654)
+++++.++++.=..+++++.-+.++.++|.+....+ +...+..+..-.+++.+..
T Consensus 83 l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (306)
T 3j1z_P 83 LAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQK 138 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHH
Confidence 577777777877888999999999999998754332 2223333334444555543
No 2
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=14.35 E-value=39 Score=33.44 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.1
Q ss_pred cccccchhhHHHh
Q psy2445 616 NFYDHHDVWHVLS 628 (654)
Q Consensus 616 ~f~D~HDiWH~lS 628 (654)
.+-+.||+||.+.
T Consensus 121 R~re~HD~~HvLt 133 (224)
T 3msq_A 121 LWRSTHDIYHVVA 133 (224)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhcchhhhhhcc
Confidence 3458999999964
No 3
>1df6_A Cycloviolacin O1; cyclic cystine knot, backbone cyclic, 3-10 helix, double- stranded anti- parallel beta-sheet, hairpin bends, loops; NMR {Viola odorata} SCOP: g.3.3.2
Probab=12.35 E-value=55 Score=22.53 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=9.0
Q ss_pred ccccccccccc
Q psy2445 313 DMCYYNYLCSH 323 (654)
Q Consensus 313 D~Cy~N~~Ca~ 323 (654)
-.||.|.+||.
T Consensus 20 kVCy~ns~~~~ 30 (30)
T 1df6_A 20 RVCYNGIPCAE 30 (30)
T ss_dssp TEEESSSBCCC
T ss_pred CeEEccccccC
Confidence 37999999973
No 4
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=11.29 E-value=1.7e+02 Score=26.10 Aligned_cols=35 Identities=6% Similarity=0.068 Sum_probs=30.0
Q ss_pred CCccccccCCCCCceEEEEeecCcceEEEEeeecc
Q psy2445 100 EPIFYNFQFDHMTESVLLVVESSDELCMTLSVQNI 134 (654)
Q Consensus 100 eP~y~~y~Fpe~~dsV~v~v~Sdd~~C~~vSVQd~ 134 (654)
.++|..|-.|++..++.+++.+.+..|.++.+.+=
T Consensus 4 p~~~e~f~l~~ge~K~~~~~~~k~~n~~~f~i~~E 38 (120)
T 1twf_K 4 PDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKE 38 (120)
T ss_dssp CCSGGGTSCCTTCCSCCEEECSSSTTEEEEEEESC
T ss_pred CCccceeecCCCCceEEEEeccCCCCeEEEEEeCC
Confidence 35788999999999999999998888999887753
No 5
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=9.49 E-value=75 Score=31.50 Aligned_cols=15 Identities=33% Similarity=0.924 Sum_probs=11.4
Q ss_pred ccccccchhhHHHhh
Q psy2445 615 LNFYDHHDVWHVLSA 629 (654)
Q Consensus 615 l~f~D~HDiWH~lSA 629 (654)
..+-+.||+||.+..
T Consensus 114 ~R~re~HD~~HvltG 128 (225)
T 3kb4_A 114 AHLGETHDIWHVVTG 128 (225)
T ss_dssp HHHHHSHHHHHHHHT
T ss_pred HHHhhhhhHHHHhhC
Confidence 445589999999753
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.06 E-value=2.6e+02 Score=20.88 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHhhhc
Q psy2445 339 GYVFLGFLFILITVNRERA 357 (654)
Q Consensus 339 gy~~~G~lfl~iv~~r~~~ 357 (654)
-.+++|+++.+..+||++.
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 3445555555555555543
No 7
>1w2y_A Deoxyuridine 5'-triphosphate nucleotide hydrolase; DUTP pyrophosphatase, dimeric, ligand complex, magnesium IONS, pathogen, drug target; HET: DUN; 1.65A {Campylobacter jejuni} SCOP: a.204.1.1 PDB: 2cic_A*
Probab=6.81 E-value=1.5e+02 Score=29.18 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.7
Q ss_pred cchhhHHHhhHHHH
Q psy2445 620 HHDVWHVLSALAMF 633 (654)
Q Consensus 620 ~HDiWH~lSA~alf 633 (654)
.=|+|||+-++++=
T Consensus 75 yVDilHFiLSi~l~ 88 (229)
T 1w2y_A 75 IVDIWHFILSLLLE 88 (229)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999998874
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=5.95 E-value=6.6e+02 Score=24.70 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhhhccCcchhh
Q psy2445 539 FGTYFLAVFMVNLCLYLMFYITMKYLSGEKIMA 571 (654)
Q Consensus 539 fat~~L~i~i~Nl~lY~~fYi~mKi~~~Eri~~ 571 (654)
.++++.++++.=..+++++=-+.++.++|....
T Consensus 74 l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~ 106 (283)
T 3h90_A 74 LAALAQSMFISGSALFLFLTGIQHLISPTPMTD 106 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 677777777777778888888889998887644
No 9
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=4.31 E-value=2.1e+02 Score=19.90 Aligned_cols=11 Identities=55% Similarity=1.087 Sum_probs=7.5
Q ss_pred ccCCCcc-cccc
Q psy2445 307 NDSGNED-MCYY 317 (654)
Q Consensus 307 ~~~~n~D-~Cy~ 317 (654)
-..||.| +|||
T Consensus 25 cipgnpdgtcyy 36 (37)
T 3q8j_A 25 CIPGNPDGTCYY 36 (37)
T ss_dssp EEECSSEEEEEE
T ss_pred ecCCCCCceEEe
Confidence 3567777 7876
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.75 E-value=5.8e+02 Score=20.98 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHH
Q psy2445 339 GYVFLGFLFILITV 352 (654)
Q Consensus 339 gy~~~G~lfl~iv~ 352 (654)
|-+++|++-+++.+
T Consensus 20 gilliGllllliwk 33 (79)
T 2knc_B 20 AILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556776666666
Done!