Query psy2445
Match_columns 654
No_of_seqs 180 out of 199
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 16:30:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w2ya_ a.204.1.1 (A:) Type II 13.9 27 0.002 32.4 1.3 13 620-632 75-87 (229)
2 d1ogla_ a.204.1.1 (A:) Type II 10.6 39 0.0029 32.1 1.3 12 621-632 71-82 (270)
3 d3cx5d2 f.23.11.1 (D:261-307) 4.4 1.6E+02 0.012 20.5 1.7 17 407-423 14-30 (47)
4 d1xg0b_ d.184.1.1 (B:) Phycoer 3.2 3E+02 0.022 20.3 2.3 22 121-142 34-55 (67)
5 d1jb0i_ f.23.17.1 (I:) Subunit 3.2 2.6E+02 0.019 18.3 1.7 11 340-350 24-34 (38)
6 d1vbga2 c.8.1.1 (A:383-517) Py 2.9 1.9E+02 0.014 24.1 0.9 14 601-614 77-90 (135)
7 d1xg0a_ d.184.1.1 (A:) Phycoer 2.9 3.3E+02 0.024 20.5 2.3 24 121-144 34-57 (76)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 2.8 9.8E+02 0.071 17.8 7.0 19 548-566 39-57 (100)
9 d1m56c_ f.25.1.1 (C:) Bacteria 2.8 7.2E+02 0.052 22.1 5.2 23 419-441 2-26 (265)
10 d1twfk_ d.74.3.2 (K:) RPB11 {B 2.7 4.9E+02 0.036 20.5 3.5 35 99-133 3-37 (114)
No 1
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase {Campylobacter jejuni [TaxId: 197]}
Probab=13.85 E-value=27 Score=32.37 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=10.9
Q ss_pred cchhhHHHhhHHH
Q psy2445 620 HHDVWHVLSALAM 632 (654)
Q Consensus 620 ~HDiWH~lSA~al 632 (654)
.=|||||+-++++
T Consensus 75 lVDi~HFiLS~~L 87 (229)
T d1w2ya_ 75 IVDIWHFILSLLL 87 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3699999988877
No 2
>d1ogla_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase {Trypanosoma cruzi [TaxId: 5693]}
Probab=10.57 E-value=39 Score=32.06 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=10.3
Q ss_pred chhhHHHhhHHH
Q psy2445 621 HDVWHVLSALAM 632 (654)
Q Consensus 621 HDiWH~lSA~al 632 (654)
=|||||.-|+++
T Consensus 71 VDIWHFiLSl~L 82 (270)
T d1ogla_ 71 ADILHFSLSGEI 82 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999988876
No 3
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.44 E-value=1.6e+02 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.510 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhhcC
Q psy2445 407 MYVIAMLSLLKIYQSRH 423 (654)
Q Consensus 407 myvi~~L~~~~iyq~RH 423 (654)
|.+++.|..+..|-+||
T Consensus 14 ~~i~s~l~~~~~y~KR~ 30 (47)
T d3cx5d2 14 VIILSSLYLLSIWVKKF 30 (47)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56667777788888887
No 4
>d1xg0b_ d.184.1.1 (B:) Phycoerythrin 545 alpha-subunits {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=3.21 E-value=3e+02 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.3
Q ss_pred cCcceEEEEeeeccCCCccccc
Q psy2445 121 SSDELCMTLSVQNISCPVVDLE 142 (654)
Q Consensus 121 Sdd~~C~~vSVQd~sCPV~Dl~ 142 (654)
.||++|..|.-+.+.+|-.+..
T Consensus 34 ~dDem~VKV~~~ki~vse~~Aa 55 (67)
T d1xg0b_ 34 KDDEMMVKAQSVKIEVSTGTAE 55 (67)
T ss_dssp GGGGEEEEEEEEECCCCHHHHH
T ss_pred cchhhhhheeeeeecccHHHHH
Confidence 4788999999999988855443
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.21 E-value=2.6e+02 Score=18.33 Aligned_cols=11 Identities=45% Similarity=0.932 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q psy2445 340 YVFLGFLFILI 350 (654)
Q Consensus 340 y~~~G~lfl~i 350 (654)
-++.|+||+-|
T Consensus 24 ~vvMglLFiyI 34 (38)
T d1jb0i_ 24 TVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHheee
Confidence 35778888765
No 6
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}
Probab=2.94 E-value=1.9e+02 Score=24.10 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=9.6
Q ss_pred CchhhhcCCCCeee
Q psy2445 601 TPAESRTYNRPCLV 614 (654)
Q Consensus 601 TpA~SR~lN~~Cil 614 (654)
.+--+||++.||++
T Consensus 77 aAivARelgiP~Vv 90 (135)
T d1vbga2 77 AAVVARGWGKCCVS 90 (135)
T ss_dssp HHHHHHHTTCCEEE
T ss_pred HHHHHHhcCCceEe
Confidence 34457888888875
No 7
>d1xg0a_ d.184.1.1 (A:) Phycoerythrin 545 alpha-subunits {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=2.89 E-value=3.3e+02 Score=20.52 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=18.9
Q ss_pred cCcceEEEEeeeccCCCccccccc
Q psy2445 121 SSDELCMTLSVQNISCPVVDLERN 144 (654)
Q Consensus 121 Sdd~~C~~vSVQd~sCPV~Dl~~~ 144 (654)
.||++|..|.-+.+.+|-.+....
T Consensus 34 ~dDem~VKV~~~kI~v~e~~Aa~~ 57 (76)
T d1xg0a_ 34 QDDEMMVKVASTKVTVSESDAAKK 57 (76)
T ss_dssp GGGGEEEEEEEEECCCCHHHHHHH
T ss_pred cchhheeeeeeeeeccCHHHHHHH
Confidence 478899999999999996655433
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.82 E-value=9.8e+02 Score=17.79 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHhhhhhccC
Q psy2445 548 MVNLCLYLMFYITMKYLSG 566 (654)
Q Consensus 548 i~Nl~lY~~fYi~mKi~~~ 566 (654)
+.=+..|++.|++.|-|.+
T Consensus 39 I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 39 ITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHhhhhhcc
Confidence 3335677888888887754
No 9
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.77 E-value=7.2e+02 Score=22.09 Aligned_cols=23 Identities=4% Similarity=0.171 Sum_probs=15.5
Q ss_pred hhhcCCC--cccchhHHHHHHHHHH
Q psy2445 419 YQSRHPD--INATAYSTFVALAFVI 441 (654)
Q Consensus 419 yq~RH~d--i~a~a~~~f~~~a~~i 441 (654)
+.||||= +.+|.+..++.+++..
T Consensus 2 ~~~~hpyh~~~~SpWPi~~s~~l~~ 26 (265)
T d1m56c_ 2 HAKNHDYHILPPSIWPFMASVGAFV 26 (265)
T ss_dssp TTCCCCSCCCCCCSHHHHHHHHHHH
T ss_pred CCCCCCCcCCCCChhHHHHHHHHHH
Confidence 3577874 5677777777766665
No 10
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.73 E-value=4.9e+02 Score=20.47 Aligned_cols=35 Identities=6% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCccccccCCCCCceEEEEeecCcceEEEEeeec
Q psy2445 99 SEPIFYNFQFDHMTESVLLVVESSDELCMTLSVQN 133 (654)
Q Consensus 99 SeP~y~~y~Fpe~~dsV~v~v~Sdd~~C~~vSVQd 133 (654)
...++..+-.|++.+.+.+...++...|..+.+.+
T Consensus 3 ~p~~~~~~~l~~~e~ki~i~~~~~~~n~~~~~i~~ 37 (114)
T d1twfk_ 3 APDRFELFLLGEGESKLKIDPDTKAPNAVVITFEK 37 (114)
T ss_dssp SCCSGGGTSCCTTCCSCCEEECSSSTTEEEEEEES
T ss_pred CcchhhhcccCCCCceEEEEecCCCCceEEEEEeC
Done!