RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2445
(654 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 5e-05
Identities = 43/317 (13%), Positives = 96/317 (30%), Gaps = 100/317 (31%)
Query: 10 LGLFIVFVVHSDDYDCSGHK--------GSF--QFKRNKAI-SFSIEKNISDENYLIASL 58
+G F+ +V + G F + I + + + ++ L+ +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 59 ALLSIFAGIYVVAFFIGIKCIRCCPSMYML-----SDQRHLMASPSEPIF--------YN 105
L+ + + S L L+A IF Y
Sbjct: 121 ELIKNY---ITARIMAKRPFDKKSNSA--LFRAVGEGNAQLVA-----IFGGQGNTDDY- 169
Query: 106 FQFDHM-----TESVLL--VVESSDELCMTLSVQNISCPVV-----DLERNVQYRGQWQT 153
F+ + T VL+ +++ S E L + V ++ +W
Sbjct: 170 --FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-------EW-- 218
Query: 154 VSSKGGMLLKKSD--------------FPL-GL-----FIVFVVHSDDYDCSGHKGSFQ- 192
L+ PL G+ ++V + + +
Sbjct: 219 --------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKG 269
Query: 193 -FKRNKAI--SFSIEKNISDENYLIASLALLSIFAGIYVVAFFIGIKCIRCCPSMYIPSP 249
++ + + +I + S E++ ++ +++ FFIG++C P+ +P P
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-------LFFIGVRCYEAYPNTSLP-P 321
Query: 250 ADILSPEEPTRYGIPHH 266
+ + E G+P
Sbjct: 322 SILEDSLENNE-GVPSP 337
Score = 32.7 bits (74), Expect = 0.53
Identities = 52/304 (17%), Positives = 82/304 (26%), Gaps = 127/304 (41%)
Query: 326 WNLSDINHIFSNIGYVFLGFLFILITVNRERASLPNNKRYGIPHHFGFFYSMGMALIMEG 385
WN +D NH G F ++ + N I HFG I E
Sbjct: 1646 WNRAD-NHFKDTYG-------FSILDIVIN-----NPVNLTI--HFG---GEKGKRIREN 1687
Query: 386 VLSACYHVCPSHSNFQFDTSFMYVIAMLSLLKIYQSRHPDINATAYSTFVALAFVIFVGM 445
+ + L KI+ +IN + S F
Sbjct: 1688 YSAMIFETIVD--------------GKLKTEKIF----KEINEHSTS-------YTFRSE 1722
Query: 446 VGVLDET--------LTFYVIFTVI--------------H------VLVCM--VLSAQIY 475
G+L T L F + H L + V+S +
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-- 1780
Query: 476 YMGRWKLDA-R-VFHRVCGVCIADIRSGPR-HCCRPMY------PSRLVLLIFGNLFNWA 526
VF+R G+ + + PR R Y P R+ +
Sbjct: 1781 -------SLVEVVFYR--GMTMQV--AVPRDELGRSNYGMIAINPGRVAA---------S 1820
Query: 527 LAAAQLRY--HMVNFGTYFLAVFMVNLCLYLMF------YITMKYLSGEKIMAHTGLYLA 578
+ L+Y V T +L V +VN + Y+ +G+ L
Sbjct: 1821 FSQEALQYVVERVGKRTGWL-VEIVN------YNVENQQYV----AAGDLR----ALDTV 1865
Query: 579 ASIL 582
++L
Sbjct: 1866 TNVL 1869
Score = 30.0 bits (67), Expect = 3.2
Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 33/126 (26%)
Query: 36 RNKAISFSIEKNISDENYLIA----SLALLSIFAGIYVVAFFIGIKCIRCCPSMYMLSDQ 91
K + S+ N +N +++ SL L++ ++ + + DQ
Sbjct: 362 AGKQVEISL-VN-GAKNLVVSGPPQSLYGLNLT-----------LRKAKAPSGL----DQ 404
Query: 92 RHLMASPSEPIFYNFQF---------DHMTESVLLVVESSDELCMTLSVQNISCPVVDLE 142
+ S + F N +F + + L+ + + ++ + ++I PV D
Sbjct: 405 SRIPFSERKLKFSN-RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 143 --RNVQ 146
+++
Sbjct: 464 DGSDLR 469
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 0.002
Identities = 52/419 (12%), Positives = 109/419 (26%), Gaps = 127/419 (30%)
Query: 78 CIRCCPSMYMLSDQRHLMASPSEPI------FYNFQFDHMTESVLLVVESSDELC--MTL 129
+ P+ SD ++ I E+ LLV+ +
Sbjct: 206 LYQIDPNWTSRSDH---SSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAW 259
Query: 130 SVQNISCPVVDLERN--------VQYRGQWQTVSSKGGMLLKKSDFPLGLFIVFVVHSDD 181
+ N+SC ++ R + + L + ++
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQ 316
Query: 182 YD-----CSGH--------------KGSFQF-------KRNKAISFSIEK---------- 205
D + + ++ K I S+
Sbjct: 317 -DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 206 ---NISDENYLIASLALLSIF--AGIYVVAFFIGIKCIRCCPSMYIPSPADILSPEEPTR 260
++ + I LLS+ I + K + S+ + + +
Sbjct: 376 DRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHK--YSL-------VEKQPKEST 425
Query: 261 YGIPH-HFGFFYSMGMALIMEGVLSACYHVCPSHSNFQFGSRKPKVLNDSGNEDMCYYNY 319
IP + + + + Y++ F P D +Y++
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNI---PKTFDSDDLIPP------YLDQYFYSH 476
Query: 320 LCSHPFWNLSDINH-----IFSNIGYVFLGFLFILITVNRERASLPNNKRYGIPHHFG-- 372
+ H L +I H +F + FL F F+ + S N I +
Sbjct: 477 IGHH----LKNIEHPERMTLFRMV---FLDFRFLEQKI--RHDSTAWNASGSILNTLQQL 527
Query: 373 FFYSMGMALIMEGVLSACYHVCPSHSNFQFDTSFMYVIAMLSLL-----KIYQSRHPDI 426
FY ++C + ++ V A+L L + S++ D+
Sbjct: 528 KFYKP--------------YICDNDPKYE-----RLVNAILDFLPKIEENLICSKYTDL 567
Score = 31.0 bits (69), Expect = 1.5
Identities = 43/285 (15%), Positives = 72/285 (25%), Gaps = 99/285 (34%)
Query: 399 NFQFDTSFMYVIAML-SLLK------IYQSRHPDINATAYSTFVAL------AFVIFVGM 445
F + V M S+L I S+ + F L FV
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV--SGTLRLFWTLLSKQEEMVQKFVE- 84
Query: 446 VGVLDETLTFYVIFTVIHVLVC----MVLSAQIYYMGRWKLDARVFHRVCGVCIADIRSG 501
VL F + + I M+ I R D +VF
Sbjct: 85 -EVLRINYKF--LMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVF-------------A 127
Query: 502 PRHCCRP------------MYPSRLVLLI----FGNLFNWALAAAQLRYHMV----NFGT 541
+ R + P++ VL+ G +A + V +F
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFK- 183
Query: 542 YFLAVFMVNLCLYLMFYITM-KYLSGEKIMAHTGLYLAASILLWTGALYFFFNKSISWAG 600
+F++ + S E ++ L L + + +
Sbjct: 184 --------------IFWLNLKNCNSPETVLEM----------LQK--LLYQIDPN----W 213
Query: 601 TPAESRTYNRPCLVLNFYDHHDVWHVLSALAMFFSFM-CLLALDD 644
T + N H + L L + CLL L +
Sbjct: 214 TSRSDHSSNIK------LRIHSIQAELRRLLKSKPYENCLLVLLN 252
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 28.5 bits (63), Expect = 9.6
Identities = 30/301 (9%), Positives = 72/301 (23%), Gaps = 65/301 (21%)
Query: 316 YYNYLCSHPFWNLSDINHIFSNIGYVFLGFLFILITVNRERASLPN----------NKRY 365
++ + H + IF V +GFL + + + +++++ +
Sbjct: 501 FWRWWIIHLWVEG-----IFEVFAVVVIGFLLVQLRLVTKKSTVRALYFQFTILLGSGVI 555
Query: 366 GIPHHFGFFYSMGMALIMEGVLSACYHVCPSHSNFQFDTSFMYVIAMLSLLKIYQSRHPD 425
GI HH+ + S + + + V SA + + + + A +
Sbjct: 556 GIGHHYYYNGSPEVWIALGAVFSALEVI---------PLTLLILEAYEQYKMMRDGGANF 606
Query: 426 INATAYSTFVALAFVIFVGMV--GVLDETLTF-----YVIFTVIHV------LVCMVLSA 472
+ ++ A VG G L T H + M A
Sbjct: 607 PYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAIA 666
Query: 473 QIYYMGRWKLDARVFHRVCGVCIADIRSGPRHCCRPMYPSRLVLLIFGNLFNWALAAAQL 532
+ Y + + + W L
Sbjct: 667 VLLYS-----------------------LRNIVKPEAWNDKWLKFSC-----WMLNIGLA 698
Query: 533 RYHMVNFGTYFLAVFMVNLCLYLMFYITMKYLSGEKIMAHTGLYLAASILLWTGALYFFF 592
++ + + +L + + + + G +
Sbjct: 699 GMVVITLLPVGILQMKEAFIHGYWASRSPSFLQQDVVQNLLLVRAVPDTIFLIGVVALLV 758
Query: 593 N 593
Sbjct: 759 F 759
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.143 0.460
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,267,752
Number of extensions: 616648
Number of successful extensions: 1498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1490
Number of HSP's successfully gapped: 18
Length of query: 654
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 554
Effective length of database: 3,909,693
Effective search space: 2165969922
Effective search space used: 2165969922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.5 bits)