RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2445
         (654 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 36.7 bits (84), Expect = 0.008
 Identities = 30/299 (10%), Positives = 77/299 (25%), Gaps = 39/299 (13%)

Query: 202 SIEKNISDENYLIASLALLSIFAGIYVVAFFIGIKCIRCCPSMYIPSPAD---------- 251
           +I+ +++  N     LAL  I               I           +           
Sbjct: 107 AIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLR 166

Query: 252 --ILSPEEPTRYGIPHHFGFFYSMGMALIMEGVLSACYHVCPS-----HSNFQFGSRKPK 304
               SP+               +     ++    S    +         ++      +  
Sbjct: 167 LYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS 226

Query: 305 VLNDSGNEDMCYYNYLCSHPFWNLSDINHIFSNIGYVFLGFLFILITVNRERASLPNNKR 364
            +  S + D+  Y Y      W    +  +     Y       +   +     ++ N  +
Sbjct: 227 RIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC--YPPPEDPAVRGRLTECLETILNKAQ 284

Query: 365 YGIPHHFGFFYSMGMALIMEGVLSACYHVCPSHSNFQFDTSFMYVIAMLSLLKIYQSRHP 424
                      +   A++ E        +   H +       + V A   L +  Q R  
Sbjct: 285 EPPKSKKVQHSNAKNAVLFE-----AISLIIHHDS----EPNLLVRACNQLGQFLQHRET 335

Query: 425 DINATAYSTFVALAFVIFVGMVGVLDETLTFYVIFTVIHVLVCMVLSAQIYYMGRWKLD 483
           ++       ++AL  +  +       E +  +     I  ++  + + +   + +  +D
Sbjct: 336 NLR------YLALESMCTLASSEFSHEAVKTH-----IETVINALKTERDVSVRQRAVD 383


>d1wk1a_ d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 150

 Score = 28.8 bits (63), Expect = 1.2
 Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 1/84 (1%)

Query: 250 ADILSPEEPT-RYGIPHHFGFFYSMGMALIMEGVLSACYHVCPSHSNFQFGSRKPKVLND 308
           AD L  ++      I  +  F+  +      +        + P   N           ++
Sbjct: 35  ADDLGDDKNNFYSSIAANTQFWIGLFKNSDGQFYWDRGQGINPDLLNQPITYWANGEPSN 94

Query: 309 SGNEDMCYYNYLCSHPFWNLSDIN 332
                  Y++          +   
Sbjct: 95  DPTRQCVYFDGRSGDKSKVWTTDT 118


>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
           {Clostridium pasteurianum [TaxId: 1501]}
          Length = 83

 Score = 27.5 bits (60), Expect = 1.5
 Identities = 11/62 (17%), Positives = 15/62 (24%), Gaps = 12/62 (19%)

Query: 236 KCIRC------CPSMYIPSPADILSPEEPTRYGIPHHFGFFYSMGMALIMEGVLSACYHV 289
           KC+ C      C           L+    T  G      F  +  +          C   
Sbjct: 20  KCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLL------CGQCIIA 73

Query: 290 CP 291
           CP
Sbjct: 74  CP 75


>d2heqa1 b.34.20.1 (A:1-71) Uncharacterized protein YorP {Bacillus
           subtilis [TaxId: 1423]}
          Length = 71

 Score = 27.0 bits (59), Expect = 1.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 361 NNKRYGIPHHFG 372
           NN RYG PHH G
Sbjct: 22  NNARYGCPHHVG 33


>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 100

 Score = 27.2 bits (60), Expect = 2.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 326 WNLSDINHIFSNIGYVFLGFL 346
           W  SD+  +FS  G + + ++
Sbjct: 27  WKTSDLYQLFSAFGNIQISWI 47


>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
           homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 36

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 466 VCMVLSAQIYYMGRWKLDARVFHRVC 491
           +C +    +Y + R  ++   FHR C
Sbjct: 10  LCALCGEHLYVLERLCVNGHFFHRSC 35


>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 169

 Score = 26.2 bits (58), Expect = 8.3
 Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 2  LLKKSDFPLGLFIVFVVHSDDYDCSGHKGSFQFKRNKAISFSIEKN 47
          LLK+ D P+G+F        +Y+                    + +
Sbjct: 56 LLKEYDLPIGIFPGDAT---NYEFDEETKKLTVLIPSICEVGYKDS 98



 Score = 26.2 bits (58), Expect = 8.3
 Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 161 LLKKSDFPLGLFIVFVVHSDDYDCSGHKGSFQFKRNKAISFSIEKN 206
           LLK+ D P+G+F        +Y+                    + +
Sbjct: 56  LLKEYDLPIGIFPGDAT---NYEFDEETKKLTVLIPSICEVGYKDS 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.460 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,552,859
Number of extensions: 121113
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 24
Length of query: 654
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 563
Effective length of database: 1,158,166
Effective search space: 652047458
Effective search space used: 652047458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.9 bits)