RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2447
(448 letters)
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 524 bits (1353), Expect = 0.0
Identities = 136/379 (35%), Positives = 215/379 (56%), Gaps = 16/379 (4%)
Query: 72 MMTPKLMVTDPELYKYILIKD-FDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKL 130
P L +TDP++ K +L+K+ + F +R + + +++ E WKRLR+ L
Sbjct: 55 GQQPVLAITDPDMIKTVLVKECYSVFTNRRP---FGPVGFMKSAISIAEDEEWKRLRSLL 111
Query: 131 SPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGI 190
SPTFTSGK+K M P+I + D L+ +R++ K + +KD Y+ DVI +T+FG+
Sbjct: 112 SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGK--PVTLKDVFGAYSMDVITSTSFGV 169
Query: 191 EINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSE---LIPLIKYLNLKIFDPRISQFFSN 247
I+SL NP F + + +++ L ++ LIP+++ LN+ +F ++ F
Sbjct: 170 NIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRK 229
Query: 248 LVKTNLSYR-EKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGY 306
VK R E R DFL +M+ + + ++D + AQS +F F GY
Sbjct: 230 SVKRMKESRLEDTQKHRVDFLQLMIDS----QNSKETESHKALSDLELVAQSIIFIFAGY 285
Query: 307 ETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMY 366
ET+SSVL+F +YELA +PD+Q KL++EI A + TY+ +M YLD V E LR++
Sbjct: 286 ETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLF 345
Query: 367 PSLPQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIE 426
P +L+R+ K ++ + + G + IP++A+H DP+Y+ +PEKF PERFS +N +
Sbjct: 346 PIAMRLERVCKKDVEIN--GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD 403
Query: 427 SRPHYTYLPFGDGPRNCIG 445
+ Y Y PFG GPRNCIG
Sbjct: 404 NIDPYIYTPFGSGPRNCIG 422
Score = 82.6 bits (205), Expect = 4e-17
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMKPSVLQMMKAVLSE--- 58
+ +KD Y+ DVI ST+FG+ I+SL NP F + + ++ L ++
Sbjct: 147 PVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPF 206
Query: 59 LIPVIKYLNLK 69
LIP+++ LN+
Sbjct: 207 LIPILEVLNIC 217
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 294 bits (755), Expect = 1e-95
Identities = 84/383 (21%), Positives = 159/383 (41%), Gaps = 36/383 (9%)
Query: 74 TPKLMVTDPELYKYILIKD---FDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKL 130
++VT PE K L+ D + R + + +R G + E W + R +
Sbjct: 34 KTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVI 93
Query: 131 SPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGI 190
F+ + + + ++QL+ + + + ++D D++ AFG+
Sbjct: 94 DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQT--PVSMQDMLTYTAMDILAKAAFGM 151
Query: 191 EINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPR--------IS 242
E + L Q +V ML+ + + L K+L K R +
Sbjct: 152 ETSMLLGAQKPLSQ--------AVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLR 203
Query: 243 QFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFF 302
Q + V+ ++ D L +++ + + D+ + FF
Sbjct: 204 QVGRDWVQRRREALKRGEEVPADILTQILKAE-----------EGAQDDEGLLDNFVTFF 252
Query: 303 FGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEA 362
G+ETS++ L F + EL+R P+I ++L+ E+ + L +E ++ YL +V KE+
Sbjct: 253 IAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLKES 312
Query: 363 LRMYPSLPQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSP 422
LR+YP R+ ++ + + + T + T+ + Y+ DP F+P+RF P
Sbjct: 313 LRLYPPAWGTFRLLEEETLI--DGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGP 370
Query: 423 ENIESRPHYTYLPFGDGPRNCIG 445
+P +TY PF G R+CIG
Sbjct: 371 GA--PKPRFTYFPFSLGHRSCIG 391
Score = 50.3 bits (121), Expect = 8e-07
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMKPSVLQMMKAVLSELIP 61
+ ++D D++ AFG+E + L Q +V M++ + +
Sbjct: 129 PVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQ--------AVKLMLEGITASRNT 180
Query: 62 VIKYL 66
+ K+L
Sbjct: 181 LAKFL 185
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 292 bits (748), Expect = 3e-94
Identities = 61/404 (15%), Positives = 118/404 (29%), Gaps = 59/404 (14%)
Query: 72 MMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHL--------------FL 117
M + +P++ + K F D E K+D + G +L
Sbjct: 74 MPPGAFIAENPQVVALLDGKSFPVLFDVDKVE---KKDLLTGTYMPSTELTGGYRILSYL 130
Query: 118 SKGEYWKRLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCAR 177
E L +FP + +L ++ K++ S + +
Sbjct: 131 DPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKEL--SLKGKADFGGSSDG 188
Query: 178 YTTDVIGTTAFGIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIF 237
+ + +G + + K VL L PL+ ++
Sbjct: 189 TAFNFLARAFYGTNPADTKLKADAPGLI------------TKWVLFNLHPLLSIGLPRVI 236
Query: 238 DPRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQ 297
+ + F + + D+ + + + D + ++ + T
Sbjct: 237 EEPLIHTF----------SLPPALVKSDYQRLYEFFLESAGEILVEADKLGISREEATHN 286
Query: 298 SFVFFFGGYETSSSVLTFCLYELAR-----NPDIQSKLRQEIMAT-KKKEGELTYEICHK 351
+ + + + + ++L +EI + K GELT K
Sbjct: 287 LLFATC---FNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIEK 343
Query: 352 MSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLDV--GTKISIPTFAIHYDPEYY 409
M V E LR P + + K + + D V G + DP+ +
Sbjct: 344 MELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIF 403
Query: 410 PDPEKFDPERFSPENIESRPHYTYLPFG-------DGPRNCIGK 446
++F PERF E E + G G + C GK
Sbjct: 404 DRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGK 447
Score = 41.8 bits (98), Expect = 4e-04
Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 5/91 (5%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMKPSVLQMMKAVLSELIP 61
+ + + +G + + VL + +LS +P
Sbjct: 179 KADFGGSSDGTAFNFLARAFYGTNPADTKLKADAPG-----LITKWVLFNLHPLLSIGLP 233
Query: 62 VIKYLNLKEAMMTPKLMVTDPELYKYILIKD 92
+ L P +V Y +
Sbjct: 234 RVIEEPLIHTFSLPPALVKSDYQRLYEFFLE 264
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 281 bits (722), Expect = 2e-90
Identities = 83/392 (21%), Positives = 148/392 (37%), Gaps = 41/392 (10%)
Query: 74 TPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNKLS 131
+ V DPE + + + + A + L K WK+ R L+
Sbjct: 56 VESVYVIDPEDVALLFKSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVALN 115
Query: 132 PTFTSGK-IKYMFPLIKKCSDQLITTIRKQIGE--SKQMSLEVKDYCARYTTDVIGTTAF 188
+ + K PL+ S ++ + ++I + S S ++ D R+ + I F
Sbjct: 116 QEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIF 175
Query: 189 GIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELI---PLIKYLNLKIFDP------ 239
G LE + Q ++ QM + L L + K +
Sbjct: 176 GERQGMLEEVVNPEAQR----FIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWD 231
Query: 240 RISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSF 299
I + + D+ I+ +L D +M+ + I A
Sbjct: 232 VIFSKADIYTQNFYWELRQKGSVHHDYRGILYRLL----------GDSKMSFEDIKANVT 281
Query: 300 VFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVT 359
GG +T+S L + LYE+ARN +Q LR E++A + + + + L
Sbjct: 282 EMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPLLKASI 341
Query: 360 KEALRMYPSLPQLDRISVKK-----YKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEK 414
KE LR++P L R V Y +P T + + +A+ +P ++ DPE
Sbjct: 342 KETLRLHPISVTLQRYLVNDLVLRDYMIP-------AKTLVQVAIYALGREPTFFFDPEN 394
Query: 415 FDPERFSPENIESRPHYTYLPFGDGPRNCIGK 446
FDP R+ ++ ++ ++ L FG G R C+G+
Sbjct: 395 FDPTRWLSKD-KNITYFRNLGFGWGVRQCLGR 425
Score = 38.1 bits (89), Expect = 0.005
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 19/114 (16%)
Query: 1 MSLEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQ-----VSLLFMKPSVLQMMKAV 55
S ++ D R+ + I + FG LE + Q + +F + +
Sbjct: 154 YSGDISDDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPD 213
Query: 56 LSELIPVIKYLNLKEAMMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRD 109
L L + + A + D + EL K
Sbjct: 214 LFRLFRTKTWKDHVAAWDV--------------IFSKADIYTQNFYWELRQKGS 253
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 266 bits (682), Expect = 3e-84
Identities = 63/377 (16%), Positives = 132/377 (35%), Gaps = 34/377 (9%)
Query: 75 PKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTF 134
L+++ +I+ + L G +F + E WK R
Sbjct: 93 ETLIISKSSSMFHIMKHNHYSSRFGSKLGLQCIGMHEKGIIFNNNPELWKTTRPFFMKAL 152
Query: 135 TSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINS 194
+ + M + + + + + ES ++V R D T I ++
Sbjct: 153 SGPGLVRMVTVCAESLKTHLDRLEEVTNESG--YVDVLTLLRRVMLDTSNTLFLRIPLDE 210
Query: 195 LENPDSE---FRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKT 251
F L++KP + + + + +K L L+
Sbjct: 211 SAIVVKIQGYFDAWQALLIKPDIFFKISWLYKKYEKSVKDLK---------DAIEVLIAE 261
Query: 252 --NLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETS 309
E+ + DF ++ + ++T + + +T
Sbjct: 262 KRRRISTEEKLEECMDFATELILAE----------KRGDLTRENVNQCILEMLIAAPDTM 311
Query: 310 SSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSL 369
S L F L+ +A++P+++ + +EI E ++ + K+ ++ E++R P +
Sbjct: 312 SVSLFFMLFLIAKHPNVEEAIIKEIQTV-IGERDIKIDDIQKLKVMENFIYESMRYQPVV 370
Query: 370 PQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRP 429
+ R +++ + + GT I + +H E++P P +F E F+ P
Sbjct: 371 DLVMRKALEDDVIDGY--PVKKGTNIILNIGRMH-RLEFFPKPNEFTLENFAKN----VP 423
Query: 430 HYTYLPFGDGPRNCIGK 446
+ + PFG GPR C GK
Sbjct: 424 YRYFQPFGFGPRGCAGK 440
Score = 36.9 bits (86), Expect = 0.013
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINSLENPDSE---FRQVSLLFMKPSVLQMMKAVLSE 58
++V R D + I ++ F L +KP + + + +
Sbjct: 184 YVDVLTLLRRVMLDTSNTLFLRIPLDESAIVVKIQGYFDAWQALLIKPDIFFKISWLYKK 243
Query: 59 LIPVIKYLN 67
+K L
Sbjct: 244 YEKSVKDLK 252
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 263 bits (675), Expect = 1e-83
Identities = 92/386 (23%), Positives = 161/386 (41%), Gaps = 42/386 (10%)
Query: 74 TPKLMVTDPELYKYILI-KDFDHFVDRGMGELDAKRDPIAGH-LFLSK--GEYWKRLRNK 129
++ L K FD + + + + AG LF S + WK+ N
Sbjct: 47 RVTRYLSSQRLIKEACDESRFDKNLSQALKFVR----DFAGDGLFTSWTHEKNWKKAHNI 102
Query: 130 LSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFG 189
L P+F+ +K ++ + QL+ + + +EV + R T D IG F
Sbjct: 103 LLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADE---HIEVPEDMTRLTLDTIGLCGFN 159
Query: 190 IEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDP--------RI 241
NS P + M++A L E + ++ N
Sbjct: 160 YRFNSFYRDQ----------PHPFITSMVRA-LDEAMNKLQRANPDDPAYDENKRQFQED 208
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
+ ++LV ++ R+ + + DD L M+ + + G+ L D + +IT F
Sbjct: 209 IKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLD--DENIRYQIIT-----F 261
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
G+ET+S +L+F LY L +NP + K +E +Y+ ++ Y+ V E
Sbjct: 262 LIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVD-PVPSYKQVKQLKYVGMVLNE 320
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYP-DPEKFDPERF 420
ALR++P+ P + + L + L+ G ++ + +H D + D E+F PERF
Sbjct: 321 ALRLWPTAPAFSLYAKEDTVLGG-EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF 379
Query: 421 SPENIESRPHYTYLPFGDGPRNCIGK 446
EN + P + + PFG+G R CIG+
Sbjct: 380 --ENPSAIPQHAFKPFGNGQRACIGQ 403
Score = 34.2 bits (79), Expect = 0.094
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 11/74 (14%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMKPSVLQMMKAVLSELIP 61
+EV + R T D IG F NS + M L E +
Sbjct: 138 HIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPH-----------PFITSMVRALDEAMN 186
Query: 62 VIKYLNLKEAMMTP 75
++ N +
Sbjct: 187 KLQRANPDDPAYDE 200
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 260 bits (666), Expect = 4e-82
Identities = 78/391 (19%), Positives = 142/391 (36%), Gaps = 45/391 (11%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRD--PIAGHLFLSKGEYWKRLRNKL 130
+ + P L + + + H + A RD A L + +G+ W+R+R+
Sbjct: 71 SFDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAF 130
Query: 131 SPTFTSGK-IKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFG 189
I + I + + + + E + ++ +++ + I +
Sbjct: 131 QKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGR-IPDLYSELNKWSFESICLVLYE 189
Query: 190 IEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLS---ELIPLIKYLNLKIF------DPR 240
L+ E L ++ M+ + L K LN K++
Sbjct: 190 KRFGLLQKETEE----EALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDT 245
Query: 241 ISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFV 300
I + + L + DFL + Q ++ + A
Sbjct: 246 IFKSVKPCIDNRLQRYSQQ--PGADFLCDIYQQD-------------HLSKKELYAAVTE 290
Query: 301 FFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTK 360
ET+++ L + LY L+RNP Q +L QE+ + E M YL K
Sbjct: 291 LQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLK 350
Query: 361 EALRMYPSLPQLDRISVK-----KYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKF 415
E++R+ PS+P R K +Y LP GT +++ T + + + D KF
Sbjct: 351 ESMRLTPSVPFTTRTLDKPTVLGEYALP-------KGTVLTLNTQVLGSSEDNFEDSHKF 403
Query: 416 DPERFSPENIESRPHYTYLPFGDGPRNCIGK 446
PER+ + + + +LPFG G R CIG+
Sbjct: 404 RPERWLQKE-KKINPFAHLPFGIGKRMCIGR 433
Score = 31.5 bits (72), Expect = 0.51
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 30/112 (26%)
Query: 5 VKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMKPSVLQMMKAVLSELIPVIK 64
+ +++ + I + L+ E +L F+ ++ MM
Sbjct: 171 LYSELNKWSFESICLVLYEKRFGLLQKETEEE---ALTFIT-AIKTMMS----------- 215
Query: 65 YLNLKEAMMTPKLMVTDPELYKYI-------LIKDFDHFVDRGMGELDAKRD 109
K+MVT EL+K + +D +D +
Sbjct: 216 --------TFGKMMVTPVELHKRLNTKVWQAHTLAWDTIFKSVKPCIDNRLQ 259
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 259 bits (664), Expect = 5e-82
Identities = 60/404 (14%), Positives = 128/404 (31%), Gaps = 59/404 (14%)
Query: 72 MMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSK------------ 119
M + ++P++ + K F D K+D G S
Sbjct: 56 MPPGPFVSSNPKVIVLLDAKSFPILFDV---SKVEKKDLFTGTYMPSTKLTGGYRVLSYL 112
Query: 120 ---GEYWKRLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCA 176
+L+ L + P + +L + ++ ++ + D
Sbjct: 113 DPSEPRHAQLK-NLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKA--AFNDVGE 169
Query: 177 RYTTDVIGTTAFGIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKI 236
+ +G F +++ + ++ VL L L +P +
Sbjct: 170 QAAFRFLGRAYFNSN-----PEETKLGTSAPTLISSWVLFNLAPTLDLGLPWF------L 218
Query: 237 FDPRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITA 296
+P + F +Y + + + +M Q + D+ +
Sbjct: 219 QEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAE----------KLGVPKDEAVHN 268
Query: 297 QSFVFFFGGYETSSSVLTFCLYELAR-NPDIQSKLRQEIMAT--KKKEGELTYEICHKMS 353
F F + + L + ++ ++L +EI +G +T E +M
Sbjct: 269 ILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMP 328
Query: 354 YLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLDV--GTKISIPTFAIHYDPEYYPD 411
V E+LR+ P +P + + + + D T +V G + DP+ +
Sbjct: 329 LTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDR 388
Query: 412 PEKFDPERFSPENIESRPHYTYLPFGDGP---------RNCIGK 446
PE++ P+RF + Y+ + +GP + C GK
Sbjct: 389 PEEYVPDRFVGDG---EALLKYVWWSNGPETESPTVENKQCAGK 429
Score = 33.3 bits (76), Expect = 0.17
Identities = 12/106 (11%), Positives = 23/106 (21%), Gaps = 4/106 (3%)
Query: 4 EVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMKPSVLQMMKAVLSELIPVI 63
E+ DV AF + N + E ++ + VL L P +
Sbjct: 155 ELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPEETKLGTSAPT----LISSWVLFNLAPTL 210
Query: 64 KYLNLKEAMMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRD 109
P + + + +
Sbjct: 211 DLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAE 256
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 255 bits (654), Expect = 1e-80
Identities = 74/380 (19%), Positives = 136/380 (35%), Gaps = 40/380 (10%)
Query: 75 PKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH-LFLSKGEYWKRLRNKLSPT 133
VT+PEL + + H L + + + G +R R + P
Sbjct: 66 TVYAVTNPELTGALALNPDYHIAGPLWESL---EGLLGKEGVATANGPLHRRQRRTIQPA 122
Query: 134 FTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEIN 193
F I P++++ + L + G++ ++ R V +
Sbjct: 123 FRLDAIPAYGPIMEEEAHALTERWQP--GKT----VDATSESFRVAVRVAARCLLRGQYM 176
Query: 194 SLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNL 253
E + ++ + ++ +PL + ++
Sbjct: 177 D-ERAERLCVALATVFRGMYRRMVVPLGPLYRLPLPANRRFNDALADLHLLVDEIIAE-- 233
Query: 254 SYREKNNIKRDDFLNIMMQLQIAQR--GKTLSPDDVEMTDDVITAQSFVFFFGGYETSSS 311
R + K DD L +++ A+ G + + E+ D V+ G ET +S
Sbjct: 234 --RRASGQKPDDLLTALLE---AKDDNGDPIG--EQEIHDQVVA-----ILTPGSETIAS 281
Query: 312 VLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQ 371
+ + L LA +P+ ++R E+ A + +E K+ + V EA+R+ P++
Sbjct: 282 TIMWLLQALADHPEHADRIRDEVEAVTG-GRPVAFEDVRKLRHTGNVIVEAMRLRPAVWV 340
Query: 372 LDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIE 426
L R +V + L G I +AI DP+ Y D +FDP+R+ PE
Sbjct: 341 LTRRAVA-------ESELGGYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAA 393
Query: 427 SRPHYTYLPFGDGPRNCIGK 446
+ P Y PF G R C
Sbjct: 394 NVPKYAMKPFSAGKRKCPSD 413
Score = 29.6 bits (67), Expect = 2.6
Identities = 2/27 (7%), Positives = 6/27 (22%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINS 28
+++ R V +
Sbjct: 151 TVDATSESFRVAVRVAARCLLRGQYMD 177
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 242 bits (620), Expect = 1e-75
Identities = 67/380 (17%), Positives = 129/380 (33%), Gaps = 39/380 (10%)
Query: 75 PKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNKLSP 132
+ + + + ++ P+ G + + + L
Sbjct: 56 TFTYLLGSDAAALLFNSK-NEDLNAEDVYSRLTT-PVFGKGVAYDVPNPVFLEQKKMLKS 113
Query: 133 TFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEI 192
K +I+K + + + GES V + + G EI
Sbjct: 114 GLNIAHFKQHVSIIEKETKEYF----ESWGESG--EKNVFEALSELIILTASHCLHGKEI 167
Query: 193 NSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTN 252
+ + Q+ + +L +PL + I F ++
Sbjct: 168 R--SQLNEKVAQLYADLDGG--FSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQK- 222
Query: 253 LSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSV 312
R ++ K DD L ++ G+ L+ D E+ +I G TSS+
Sbjct: 223 ---RRQSQEKIDDILQTLLDATYKD-GRPLT--DDEVAGMLIG-----LLLAGQHTSSTT 271
Query: 313 LTFCLYELARNPDIQSKLRQEIMA-TKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQ 371
+ + LAR+ +Q K E + LTY+ ++ LD+ KE LR+ P +
Sbjct: 272 SAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMI 331
Query: 372 LDR-----ISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIE 426
+ R +V Y +P G ++ + + + + F+P+R+ +N
Sbjct: 332 MMRMARTPQTVAGYTIP-------PGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPA 384
Query: 427 SRPHYTYLPFGDGPRNCIGK 446
S + Y+PFG G CIG+
Sbjct: 385 SGEKFAYVPFGAGRHRCIGE 404
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 235 bits (601), Expect = 6e-73
Identities = 83/385 (21%), Positives = 145/385 (37%), Gaps = 56/385 (14%)
Query: 74 TPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH-LFLSKGEYWKRLRNKLSP 132
+ ++ +++ K+ + F + R + + L GE + R L
Sbjct: 54 KNVIFISGALANRFLFTKEQETFQ---ATWPLSTRILLGPNALATQMGEIHRSRRKILYQ 110
Query: 133 TFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEI 192
F + P + + K + R T DV T G ++
Sbjct: 111 AFLPRTLDSYLPKMDGIVQGYLEQW------GKANEVIWYPQLRRMTFDVAATLFMGEKV 164
Query: 193 NSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPL-----IKYLNLKIFDPRISQFFSN 247
+ F ++ + S IPL K + +
Sbjct: 165 SQNPQLFPWFET------------YIQGLFSLPIPLPNTLFGKSQRAR---ALLLAELEK 209
Query: 248 LVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYE 307
++K R++ +D L I++ ++ ++ + Q + F G+E
Sbjct: 210 IIKA----RQQQPPSEEDALGILLA--------ARDDNNQPLSLPELKDQILLLLFAGHE 257
Query: 308 TSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYP 367
T +S L+ L ++ DI+ ++RQE + + ELT E KM YLD+V +E LR+ P
Sbjct: 258 TLTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQ-ELTAETLKKMPYLDQVLQEVLRLIP 316
Query: 368 SLPQLDR-----ISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSP 422
+ R + + P G +S H DP+ YPDPEKFDPERF+P
Sbjct: 317 PVGGGFRELIQDCQFQGFHFP-------KGWLVSYQISQTHADPDLYPDPEKFDPERFTP 369
Query: 423 ENIESRPH-YTYLPFGDGPRNCIGK 446
+ + + ++PFG G R C+GK
Sbjct: 370 DGSATHNPPFAHVPFGGGLRECLGK 394
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 233 bits (595), Expect = 1e-71
Identities = 62/393 (15%), Positives = 130/393 (33%), Gaps = 47/393 (11%)
Query: 77 LMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNKLSPTF 134
+T+P Y +L + A GH + G + + + T
Sbjct: 60 HFITNPLSYHKVLCHGKYFDWKKFHFATSA---KAFGHRSIDPMDGNTTENINDTFIKTL 116
Query: 135 TSGKIKYMFPLI-KKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEIN 193
+ + + + + + + ++ + +C R + T FG ++
Sbjct: 117 QGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLT 176
Query: 194 SLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNL 253
+ + L K L+ L + +F L ++
Sbjct: 177 RRDTQKAHILNN---------LDNFKQFDKVFPALVAGLPIHMF-RTAHNAREKLAESLR 226
Query: 254 SYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVL 313
+ + +++ M L D V + +
Sbjct: 227 HENLQKRESISELISLRMFLND---------TLSTFDDLEKAKTHLVVLWASQANTIPAT 277
Query: 314 TFCLYELARNPDIQSKLRQEIMATKKKEGE----------LTYEICHKMSYLDKVTKEAL 363
+ L+++ RNP+ +E+ T + G+ L+ + + LD + KE+L
Sbjct: 278 FWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESL 337
Query: 364 RMYPSLPQLDRISVKKYKLPNTDLTLDV--GTKISIPTFAIHYDPEYYPDPEKFDPERFS 421
R+ + + R + + + L D + ++ I++ +H DPE YPDP F +R+
Sbjct: 338 RLSSASLNI-RTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYL 396
Query: 422 PENIESR---------PHYTYLPFGDGPRNCIG 445
EN +++ Y Y+PFG G C G
Sbjct: 397 DENGKTKTTFYCNGLKLKYYYMPFGSGATICPG 429
Score = 31.6 bits (72), Expect = 0.64
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 4 EVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFMK 45
+ +C R + T FG ++ + + F +
Sbjct: 153 GMYSFCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ 194
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 231 bits (590), Expect = 3e-71
Identities = 61/376 (16%), Positives = 133/376 (35%), Gaps = 39/376 (10%)
Query: 78 MVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSG 137
+++ ++ D + PI G + +R +
Sbjct: 52 LLSGSHANEFFFRAGDDDLD---QAKAYPFMTPIFGEGVVFDASPERRKEMLHNAALRGE 108
Query: 138 KIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLEN 197
++K I+ ++I +++ D+ A T G + +
Sbjct: 109 QMKGHAATIEDQVRRMIA--DWGEAGE----IDLLDFFAELTIYTSSACLIGKKFR--DQ 160
Query: 198 PDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLSYRE 257
D F ++ + + + A + +P+ + + ++++
Sbjct: 161 LDGRFAKLYHELERGTDPL---AYVDPYLPIESFRRRDEARNGLVALVADIMN---GRIA 214
Query: 258 --KNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTF 315
+ D L++++ ++ S E+T I+ F G+ TSS ++
Sbjct: 215 NPPTDKSDRDMLDVLIAVKAETGTPRFS--ADEITGMFIS-----MMFAGHHTSSGTASW 267
Query: 316 CLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLDR- 374
L EL R+ D + + E+ +++ ++ L+ V KE LR++P L L R
Sbjct: 268 TLIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRV 327
Query: 375 ----ISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPH 430
V+ +++ G ++ + PE +PDP F P R+ E +
Sbjct: 328 AKGEFEVQGHRIH-------EGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLN 380
Query: 431 -YTYLPFGDGPRNCIG 445
+T++PFG G C+G
Sbjct: 381 RWTWIPFGAGRHRCVG 396
Score = 27.6 bits (62), Expect = 9.0
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 3 LEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQV 39
+++ D+ A T + G + + D F ++
Sbjct: 134 IDLLDFFAELTIYTSSACLIGKKFR--DQLDGRFAKL 168
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 225 bits (576), Expect = 6e-70
Identities = 68/376 (18%), Positives = 117/376 (31%), Gaps = 82/376 (21%)
Query: 74 TPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH-LFLSKGEYWKRLRNKLSP 132
P ++ DPE + L+ + L + G L GE WK R L
Sbjct: 41 FPLALIFDPEGVEGALLAEGTTKATFQYRALS----RLTGRGLLTDWGESWKEARKALKD 96
Query: 133 TFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEI 192
F ++ +++ + R + ++ + ++G FG +
Sbjct: 97 PFLPKNVRGYREAMEEEARAFFGEWRGE-------ERDLDHEMLALSLRLLGRALFGKPL 149
Query: 193 NSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTN 252
+ L+ L ++++ + L+L
Sbjct: 150 ------SPSLAE--------HALKALDRIMAQTRSPLALLDL---------------AAE 180
Query: 253 LSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSV 312
+R+ R L + L + +T G+ET +S
Sbjct: 181 ARFRK----DRGALYREAEALIVHPPLSHLP--RERALSEAVT-----LLVAGHETVASA 229
Query: 313 LTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVT---KEALRMYPSL 369
LT+ L+ PD Q ++ + + +EALR+YP
Sbjct: 230 LTWSFLLLSHRPDWQKRVAESE---------------------EAALAAFQEALRLYPPA 268
Query: 370 PQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRP 429
L R + L + L GT + + + +PD E F PERF E P
Sbjct: 269 WILTRRLERPLLLG--EDRLPPGTTLVLSPYVTQRLH--FPDGEAFRPERFLEER--GTP 322
Query: 430 HYTYLPFGDGPRNCIG 445
Y PFG G R C+G
Sbjct: 323 SGRYFPFGLGQRLCLG 338
Score = 28.7 bits (65), Expect = 4.0
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 3 LEVKDYCARYTTDVIGSTAFGIEINS 28
++ + ++G FG ++
Sbjct: 126 RDLDHEMLALSLRLLGRALFGKPLSP 151
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 228 bits (583), Expect = 9e-70
Identities = 64/394 (16%), Positives = 129/394 (32%), Gaps = 48/394 (12%)
Query: 77 LMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNKLSPTF 134
++ DP Y ++ + + I S + R++ L
Sbjct: 65 TVLLDPHSYDAVVWEPRTRLDFHA--YAIFLMERIFDVQLPHYSPSDEKARMKLTLLHRE 122
Query: 135 TSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINS 194
+ M+ L+ + +M + D+ + T +GIE
Sbjct: 123 LQALTEAMY---TNLHAVLLGDATEAGSGWHEM--GLLDFSYSFLLRAGYLTLYGIEALP 177
Query: 195 LENPD-SEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFD-PRISQFFSNLVKTN 252
+ ++ R S V L L+P + +L + D + S L K
Sbjct: 178 RTHESQAQDRVHSADVFHTFRQ------LDRLLPKLARGSLSVGDKDHMCSVKSRLWKLL 231
Query: 253 LSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSV 312
R R +L + +++ +++++ + +
Sbjct: 232 SPARLARRAHRSKWLESYLLHL----------EEMGVSEEMQARALVLQLWATQGNMGPA 281
Query: 313 LTFCLYELARNPDIQSKLRQEIMATKKKEGE-------LTYEICHKMSYLDKVTKEALRM 365
+ L L +NP+ + +R E+ + + + L ++ LD V E+LR+
Sbjct: 282 AFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRL 341
Query: 366 YPSLPQLDRISVKKYKLPNTDL---TLDVGTKISI-PTFAIHYDPEYYPDPEKFDPERFS 421
+ + R V +P D L G ++ + P + DPE Y DPE F RF
Sbjct: 342 TAAPF-ITREVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFL 400
Query: 422 PENIESRPH---------YTYLPFGDGPRNCIGK 446
+ + +P+G G +C+G+
Sbjct: 401 NPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGR 434
Score = 33.6 bits (77), Expect = 0.13
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 4 EVKDYCARYTTDVIGSTAFGIEINSLENPDSEF 36
+ D+ + T +GIE +
Sbjct: 153 GLLDFSYSFLLRAGYLTLYGIEALPRTHESQAQ 185
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 217 bits (555), Expect = 5e-66
Identities = 67/392 (17%), Positives = 135/392 (34%), Gaps = 64/392 (16%)
Query: 75 PKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNKLSP 132
+V DP + + + E+ + P+ G + + + N L+
Sbjct: 49 RVTIVGDPHEHSRFFLPRNEVLSP---REVYSFMVPVFGEGVAYAAPYPRMREQLNFLAE 105
Query: 133 TFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEI 192
T K + P I+ + + + + + + + C+ + FG ++
Sbjct: 106 ELTIAKFQNFVPAIQHEVRKFMAANWDK----DEGEINLLEDCSTMIINTACQCLFGEDL 161
Query: 193 NSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDP------------R 240
+ Q+L + S LIP +L + + P
Sbjct: 162 RKRLDARR-------------FAQLLAKMESSLIPAAVFLPILLKLPLPQSARCHEARTE 208
Query: 241 ISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFV 300
+ + S ++ + D L+ ++ G +S E+ ++
Sbjct: 209 LQKILSEIIIARKEEEVNKDSSTSDLLSGLLSAVYRD-GTPMS--LHEVCGMIVA----- 260
Query: 301 FFFGGYETSSSVLTFCLYELARNPDIQS--KLRQEIMATKKKEGELTYEICHKMSYLDKV 358
F G TSS T+ + L +++ LR+EI + + +M + ++
Sbjct: 261 AMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEFPAQLN--YNNVMDEMPFAERC 318
Query: 359 TKEALRMYPSLPQLDR-----ISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPE 413
+E++R P L L R + V Y +P G I+ H+D E +P+P
Sbjct: 319 ARESIRRDPPLLMLMRKVMADVKVGSYVVP-------KGDIIACSPLLSHHDEEAFPEPR 371
Query: 414 KFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
++DPER + ++ FG G CIG
Sbjct: 372 RWDPERD------EKVEGAFIGFGAGVHKCIG 397
Score = 29.2 bits (66), Expect = 3.2
Identities = 3/43 (6%), Positives = 15/43 (34%)
Query: 2 SLEVKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLFM 44
+ + + C+ + FG ++ + + ++ +
Sbjct: 137 EINLLEDCSTMIINTACQCLFGEDLRKRLDARRFAQLLAKMES 179
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 187 bits (478), Expect = 4e-55
Identities = 54/386 (13%), Positives = 106/386 (27%), Gaps = 72/386 (18%)
Query: 72 MMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNK 129
+ + +T E K D + + + G + G +
Sbjct: 42 LGKNFICMTGAEAAKVFYDTD-RFQRQNALP--KRVQKSLFGVNAIQGMDGSAHIHRKML 98
Query: 130 LSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFG 189
T K + L+ + +T K + + + V A
Sbjct: 99 FLSLMTPPHQKRLAELMTEEWKAAVTRWEKAD------EVVLFEEAKEILCRVACYWAGV 152
Query: 190 IEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLV 249
++E ++ + + M+ A + K + PR ++ ++
Sbjct: 153 PL------KETEVKERA-----DDFIDMVDAFGAVGPRHWKGRRAR---PRAEEWIEVMI 198
Query: 250 KTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETS 309
+ + K L+ M +D D + A +
Sbjct: 199 EDARAGLLKT--TSGTALHEMAFHT---------QEDGSQLDSRMAAIELINVLRPIVAI 247
Query: 310 SSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSL 369
S L F L +P + LR + +E R YP
Sbjct: 248 SYFLVFSALALHEHPKYKEWLRSG-----------------NSREREMFVQEVRRYYPFG 290
Query: 370 PQLDRISVKK-----YKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPEN 424
P L + K + GT + + + ++DP + P++F PERF+
Sbjct: 291 PFLGALVKKDFVWNNCEFKK-------GTSVLLDLYGTNHDPRLWDHPDEFRPERFAERE 343
Query: 425 IESRPHYTYLPFGDGP----RNCIGK 446
+ +P G G C G+
Sbjct: 344 ---ENLFDMIPQGGGHAEKGHRCPGE 366
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 175 bits (447), Expect = 4e-50
Identities = 55/389 (14%), Positives = 117/389 (30%), Gaps = 59/389 (15%)
Query: 77 LMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTS 136
++ D Y +L D ++ K I + S ++ R ++ F
Sbjct: 65 TVLLDSNCYDAVL-SDVASLDQTSYAQVLMK--RIFNMILPSHNPESEKKRAEM--HFQG 119
Query: 137 GKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLE 196
+ + ++ L+T + S+ + + C T FG E N+
Sbjct: 120 ASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGAENNN-- 177
Query: 197 NPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNL-KIFDPRISQFFSNLVKTNLSY 255
+ Q+ + +L+P + + K S L K
Sbjct: 178 --SAALTQIYEEFRR----------FDKLLPKLARTTVNKEEKQIASAAREKLWKWLTPS 225
Query: 256 REKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTF 315
+ +L ++ D + ++ + + + +
Sbjct: 226 GLDRKPREQSWLGSYVKQL----------QDEGIDAEMQRRAMLLQLWVTQGNAGPAAFW 275
Query: 316 CLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLP----- 370
+ L +P+ +R+EI + + E D V E LR+ +
Sbjct: 276 VMGYLLTHPEALRAVREEI---QGGKHLRLEERQKNTPVFDSVLWETLRLTAAALITRDV 332
Query: 371 ----QLDRISVKKYKLPNTDLTLDVGTKISI-PTFAIHYDPEYYPDPEKFDPERFSPENI 425
++ + ++Y L G ++ + P + DP+ + PE F +RF +
Sbjct: 333 TQDKKICLSNGQEYHLR-------RGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADR 385
Query: 426 ES---------RPHYTYLPFGDGPRNCIG 445
R Y +P+G C G
Sbjct: 386 TEKKDFFKNGARVKYPSVPWGTEDNLCPG 414
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 160 bits (407), Expect = 6e-45
Identities = 46/386 (11%), Positives = 108/386 (27%), Gaps = 73/386 (18%)
Query: 72 MMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNK 129
++ + + + + M K + G + GE + +
Sbjct: 41 LLKKTNCLKGAKAAEIFYDTT-RFEREGAMPVAIQK--TLLGQGGVQGLDGETHRHRKQM 97
Query: 130 LSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFG 189
T +++ + L + + + + E+ T + A
Sbjct: 98 FMGLMTPERVRALAQLFEAEWRRAVPGWTR--KGEIVFYDELH----EPLTRAVCAWAGV 151
Query: 190 IEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLV 249
PD E + + + A S + + R+ + ++
Sbjct: 152 PL------PDDEAGNRA-----GELRALFDAAGSASPRHLWSRLARR---RVDAWAKRII 197
Query: 250 KTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETS 309
+ R + + + ++ + A V
Sbjct: 198 E---GIRAGSIGSGSGTAAYAIAWHRDRHD--------DLLSPHVAAVELVNVLRPTVAI 246
Query: 310 SSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSL 369
+ +TF + L I++ L Q+ Y + +E R YP
Sbjct: 247 AVYITFVAHALQTCSGIRAALVQQ------------------PDYAELFVQEVRRFYPFF 288
Query: 370 PQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPEN 424
P + + + D + G ++ + + ++D + DP++F PERF +
Sbjct: 289 PAVVARASQ-------DFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAWD 341
Query: 425 IESRPHYTYLPFGDGP----RNCIGK 446
+ ++P G G C G+
Sbjct: 342 ---EDSFNFIPQGGGDHYLGHRCPGE 364
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 123 bits (310), Expect = 8e-31
Identities = 94/401 (23%), Positives = 165/401 (41%), Gaps = 48/401 (11%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRG---MGELDAKRDPIAGHLFLSKGEYWKRLRNK 129
++V +L K +LIK F R ++ + G F G +W+ R +
Sbjct: 52 TKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRK--GIAFADSGAHWQLHR-R 108
Query: 130 LSPT----FTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGT 185
L+ F G + + +I + L + G+S +S V + A T+VI
Sbjct: 109 LAMATFALFKDGD-QKLEKIICQEISTLCDMLATHNGQSIDISFPV--FVA--VTNVISL 163
Query: 186 TAFGIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYL------NLKIFDP 239
F S +N D E + + + + K L +L+P +K LK
Sbjct: 164 ICFN---TSYKNGDPELNVI-QNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVK 219
Query: 240 RISQFFSNLVKTNLSYREKNNIKRD--D-FLNIMMQLQIAQRGKTLSPDDVEMTDDVITA 296
+ + +++ ++I + D + M D ++D+ I
Sbjct: 220 IRNDLLNKILENYKEKFRSDSI-TNMLDTLMQAKMNSD--NGNAGPDQDSELLSDNHILT 276
Query: 297 QSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLD 356
F G ET++SV+ + L L NP ++ KL +EI T +++ L+
Sbjct: 277 TIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLE 336
Query: 357 KVTKEALRMYPSLPQL-------DRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYY 409
+E LR+ P P L D S+ ++ + GT++ I +A+H++ + +
Sbjct: 337 ATIREVLRLRPVAPMLIPHKANVD-SSIGEFAVDK-------GTEVIINLWALHHNEKEW 388
Query: 410 PDPEKFDPERF-SPE-NIESRPHYTYLPFGDGPRNCIGKIL 448
P++F PERF +P P +YLPFG GPR+CIG+IL
Sbjct: 389 HQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEIL 429
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 118 bits (298), Expect = 4e-29
Identities = 68/411 (16%), Positives = 138/411 (33%), Gaps = 61/411 (14%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHL-------FLSKGEYWKR 125
P +++ L++ F DR + F E+WK
Sbjct: 51 SCPIVVLNGERAIHQALVQQGSAFADRP-------SFASFRVVSGGRSMAFGHYSEHWKV 103
Query: 126 LR-------NKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARY 178
R + + + + + +L+ + + + + A
Sbjct: 104 QRRAAHSMMRNFFTRQPRSR-QVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVA-- 160
Query: 179 TTDVIGTTAFGIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYL------ 232
+V+ FG + D EFR++ L + + L +++P ++Y
Sbjct: 161 VANVMSAVCFG---CRYSHDDPEFREL-LSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRT 216
Query: 233 ---NLKIFDPRISQFFSNLVKTNLSYREKNNIKRD--D-FLNIMMQLQIAQRGKTLSPDD 286
+ + S F + + RD D F+ + +
Sbjct: 217 VFREFEQLNRNFSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEK----KAAGDSHGGG 272
Query: 287 VEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTY 346
+ + + A F +T S+ L + L R PD+Q++++ E+ ++
Sbjct: 273 ARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCM 332
Query: 347 EICHKMSYLDKVTKEALRMYPSLPQL-------DRISVKKYKLPNTDLTLDVGTKISIPT 399
+ Y+ EA+R +P + SV Y +P T + +
Sbjct: 333 GDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTAN-TSVLGYHIPK-------DTVVFVNQ 384
Query: 400 FAIHYDPEYYPDPEKFDPERFSPEN--IESRPHYTYLPFGDGPRNCIGKIL 448
+++++DP +P+PE FDP RF ++ I + F G R CIG+ L
Sbjct: 385 WSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEEL 435
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 118 bits (297), Expect = 5e-29
Identities = 72/399 (18%), Positives = 141/399 (35%), Gaps = 55/399 (13%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRG---MGELDAKRDPIAGHLFLSKGEYWKRLRNK 129
+ +++ + +I+ + F R +L ++R WK + K
Sbjct: 66 LQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQ--DISLGDYSLLWKAHK-K 122
Query: 130 LS-PTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAF 188
L+ G M P + + + + +R Q G + E T +I F
Sbjct: 123 LTRSALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTIQKEF--SLL--TCSIICYLTF 178
Query: 189 GIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYL------NLKIFDPRIS 242
G N + F +MK + +++P +++ LK
Sbjct: 179 G---NKEDTLVHAFHDCVQDLMK--TWDHWSIQILDMVPFLRFFPNPGLWRLKQAIENRD 233
Query: 243 QFFSNLVKTNLSYREKNNIKRD--D-FLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSF 299
++ + RD D L + + + + ++ + +
Sbjct: 234 HMVEKQLRRHKESMVAGQW-RDMTDYMLQGVGR-------QRVEEGPGQLLEGHVHMSVV 285
Query: 300 VFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMA---TKKKEGELTYEICHKMSYLD 356
F GG ET++S L++ + L +P+IQ +L++E+ +TY+ ++ L+
Sbjct: 286 DLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLN 345
Query: 357 KVTKEALRMYPSLPQL-------DRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYY 409
E LR+ P +P S+ Y +P G + H D +
Sbjct: 346 ATIAEVLRLRPVVPLALPHRTTRP-SSIFGYDIPE-------GMVVIPNLQGAHLDETVW 397
Query: 410 PDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
P +F P+RF +E + + L FG G R C+G+ L
Sbjct: 398 EQPHEFRPDRF----LEPGANPSALAFGCGARVCLGESL 432
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 114 bits (287), Expect = 1e-27
Identities = 77/407 (18%), Positives = 146/407 (35%), Gaps = 56/407 (13%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRG---MGELDAKRDPIAGHLFLSKGEYWKRLRNK 129
TP L+++ + + L++ D F R L + G W R +
Sbjct: 58 STPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLT--FSTDSGPVWAARR-R 114
Query: 130 LSPT----FTSGK------IKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYT 179
L+ F+ Y+ + K + LI+ +++ + + +
Sbjct: 115 LAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVS--V 172
Query: 180 TDVIGTTAFGIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYL------N 233
+VIG FG E + + V + P+++YL
Sbjct: 173 ANVIGAMCFG---QHFPESSDEMLSL-VKNTHEFVETASSGNPLDFFPILRYLPNPALQR 228
Query: 234 LKIFDPRISQFFSNLVKTNLSYREKNNIKRD--DFLNIMMQLQIAQRGKTLSPDDVEMTD 291
K F+ R F V+ + +KN++ RD L + K +
Sbjct: 229 FKAFNQRFLWFLQKTVQEHYQDFDKNSV-RDITGALFKHSK-------KGPRASGNLIPQ 280
Query: 292 DVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHK 351
+ I F G++T ++ +++ L L P+IQ K+++E+ +E +
Sbjct: 281 EKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQ 340
Query: 352 MSYLDKVTKEALRMYPSLPQL-------DRISVKKYKLPNTDLTLDVGTKISIPTFAIHY 404
+ YL+ E R LP D ++ + +P + + + +++
Sbjct: 341 LPYLEAFILETFRHSSFLPFTIPHSTTRD-TTLNGFYIPK-------KCCVFVNQWQVNH 392
Query: 405 DPEYYPDPEKFDPERFSPEN---IESRPHYTYLPFGDGPRNCIGKIL 448
DPE + DP +F PERF + I + FG G R CIG++L
Sbjct: 393 DPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVL 439
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 113 bits (285), Expect = 1e-27
Identities = 81/396 (20%), Positives = 147/396 (37%), Gaps = 45/396 (11%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSP 132
+++ ++ K L+ + F DR L K + G L G W R +L+
Sbjct: 57 GISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDHR-RLAV 115
Query: 133 T----FTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAF 188
F G+ K I + + I G + A +++ F
Sbjct: 116 NSFRYFGYGQ-KSFESKILEETKFFNDAIETYKGRPFDFKQLI--TNA--VSNITNLIIF 170
Query: 189 GIEINSLENPDSEFRQVSLLVMKPSVLQ-MLKAVLSELIPLIKYL----NLKIFDP--RI 241
G D++F+ + L + L L P I L + ++F +
Sbjct: 171 G---ERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVV 227
Query: 242 SQFFSNLVKTNLSYREKNNIKRD--DFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSF 299
F S L++ R+ + D M + + + + +
Sbjct: 228 YDFLSRLIEKASVNRKPQLP-QHFVDAYLDEMD-------QGKNDPSSTFSKENLIFSVG 279
Query: 300 VFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVT 359
G ET+++VL + + +A P+IQ ++++EI G+ +++ KM Y + V
Sbjct: 280 ELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVL 339
Query: 360 KEALRMYPSLPQL-------DRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDP 412
E LR +P D V+ Y +P GT + +++H+D +Y+ DP
Sbjct: 340 HEVLRFCNIVPLGIFHATSED-AVVRGYSIPK-------GTTVITNLYSVHFDEKYWRDP 391
Query: 413 EKFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
E F PERF + +PF G R+C+G+ L
Sbjct: 392 EVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHL 427
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 110 bits (277), Expect = 2e-26
Identities = 67/382 (17%), Positives = 125/382 (32%), Gaps = 46/382 (12%)
Query: 89 LIKDFDHFVDRG---MGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPT----FTSGKIKY 141
L+ + DR + ++ G G W+ R + S + GK K
Sbjct: 69 LVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQR-RFSVSTLRNLGLGK-KS 126
Query: 142 MFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLENPDSE 201
+ + + + L G + + + A ++VI + G E D
Sbjct: 127 LEQWVTEEAACLCAAFANHSGRPFRPNGLL--DKA--VSNVIASLTCG---RRFEYDDPR 179
Query: 202 FRQ-VSLLVMKPSVLQMLKAVLSELIPLIKYL---NLKIFDP--RISQFFSNLVKTNLSY 255
F + + L + +P++ ++ K+ L+ +
Sbjct: 180 FLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRMT 239
Query: 256 REKNNIKRD--DFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVL 313
+ RD + M+ K + D+ + F G T+S+ L
Sbjct: 240 WDPAQPPRDLTEAFLAEME-------KAKGNPESSFNDENLRIVVADLFSAGMVTTSTTL 292
Query: 314 TFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQL- 372
+ L + +PD+Q +++QEI + M Y V E R +P
Sbjct: 293 AWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGV 352
Query: 373 ------DRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIE 426
D I V+ +++P GT + ++ D + P +F PE F
Sbjct: 353 THMTSRD-IEVQGFRIPK-------GTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGH 404
Query: 427 SRPHYTYLPFGDGPRNCIGKIL 448
+LPF G R C+G+ L
Sbjct: 405 FVKPEAFLPFSAGRRACLGEPL 426
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 100 bits (251), Expect = 5e-23
Identities = 86/403 (21%), Positives = 156/403 (38%), Gaps = 58/403 (14%)
Query: 72 MMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLF------LSKGEYWKR 125
+ P +++ E K LI + F RG P+A S G+ WK
Sbjct: 53 GLKPIVVLHGYEAVKEALIDLGEEFSGRG-------IFPLAERANRGFGIVFSNGKKWKE 105
Query: 126 LRNKLSPT----FTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTD 181
+R + S F GK + + +++ + L+ +RK + + CA +
Sbjct: 106 IR-RFSLMTLRNFGMGK-RSIEDRVQEEARCLVEELRKTKASPCDPTFIL--GCA--PCN 159
Query: 182 VIGTTAFGIEINSLENPDSEFRQVSLLVMKPSVLQ--MLKAVLSELIPLIKYL---NLKI 236
VI + F + D +F + + + + + + P+I Y + K+
Sbjct: 160 VICSIIFH---KRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKL 216
Query: 237 FDP--RISQFFSNLVKTNLSYREKNNIKRD--DFLNIMMQLQIAQRGKTLSPDDVEMTDD 292
+ + VK + + NN +D D + M+ K E T +
Sbjct: 217 LKNVAFMKSYILEKVKEHQESMDMNNP-QDFIDCFLMKME-------KEKHNQPSEFTIE 268
Query: 293 VITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKM 352
+ + F G ET+S+ L + L L ++P++ +K+++EI + + M
Sbjct: 269 SLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHM 328
Query: 353 SYLDKVTKEALRMYPSLPQ-LDR-----ISVKKYKLPNTDLTLDVGTKISIPTF-AIHYD 405
Y D V E R LP L I + Y +P GT I + + ++ +D
Sbjct: 329 PYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPK-------GTTI-LISLTSVLHD 380
Query: 406 PEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
+ +P+PE FDP F E + ++PF G R C+G+ L
Sbjct: 381 NKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEAL 423
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 99.5 bits (249), Expect = 9e-23
Identities = 84/400 (21%), Positives = 162/400 (40%), Gaps = 52/400 (13%)
Query: 72 MMTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNK 129
+++ + + L+ + F RG D + + S GE K+LR +
Sbjct: 52 GPRRVVVLCGHDAVREALVDQAEEFSGRGEQAT---FDWVFKGYGVVFSNGERAKQLR-R 107
Query: 130 LSPT----FTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGT 185
S F GK + + I++ + LI +R G + + + ++VI +
Sbjct: 108 FSIATLRDFGVGK-RGIEERIQEEAGFLIDALRGTGGANIDPTFFL--SRT--VSNVISS 162
Query: 186 TAFGIEINSLENPDSEFRQVSLLVMKPSVLQ--MLKAVLSELIPLIKYL---NLKIFDP- 239
FG + + D EF + +++ + ++K+L + F
Sbjct: 163 IVFG---DRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLL 219
Query: 240 -RISQFFSNLVKTNLSYREKNNIKRD--D-FLNIMMQLQIAQRGKTLSPDDVEMTDDVIT 295
+ F + V+ N + N+ RD D FL +++ + K + E +
Sbjct: 220 QGLEDFIAKKVEHNQRTLDPNSP-RDFIDSFL-----IRMQEEEKN---PNTEFYLKNLV 270
Query: 296 AQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYL 355
+ F GG ET S+ L + L ++P++++K+ +EI K + +E KM Y+
Sbjct: 271 MTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYM 330
Query: 356 DKVTKEALRMYPSLPQ-LDR-----ISVKKYKLPNTDLTLDVGTKISIPTF-AIHYDPEY 408
+ V E R +P L R + + LP GT++ P ++ DP +
Sbjct: 331 EAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPK-------GTEV-YPMLGSVLRDPSF 382
Query: 409 YPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
+ +P+ F+P+ F E + + ++PF G RNC G+ L
Sbjct: 383 FSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGL 422
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 97.2 bits (243), Expect = 5e-22
Identities = 93/381 (24%), Positives = 148/381 (38%), Gaps = 49/381 (12%)
Query: 89 LIKDFDHFVDRGMGELDAKRDPIAGH-LFLSKGEYWKRLRNKLSPT----FTSGKIKYMF 143
L+ D F RG + + G WK +R + S T + GK +
Sbjct: 69 LLDYKDEFSGRGDLPA---FHAHRDRGIIFNNGPTWKDIR-RFSLTTLRNYGMGK-QGNE 123
Query: 144 PLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLENPDSEFR 203
I++ + L+ +RK G+ + + CA +VI F + D +F
Sbjct: 124 SRIQREAHFLLEALRKTQGQPFDPTFLI--GCA--PCNVIADILFR---KHFDYNDEKFL 176
Query: 204 QVSLLVMKP-SVLQMLKAVLSELIP-LIKYL---NLKIFDP--RISQFFSNLVKTNLSYR 256
++ L + +L L P + YL + K+ + ++ S VK +
Sbjct: 177 RLMYLFNENFHLLSTPWLQLYNNFPSFLHYLPGSHRKVIKNVAEVKEYVSERVKEHHQSL 236
Query: 257 EKNNIKRD--DFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLT 314
+ N RD D L + M+ K + T D IT FF G ET+S+ L
Sbjct: 237 DPNCP-RDLTDCLLVEME-------KEKHSAERLYTMDGITVTVADLFFAGTETTSTTLR 288
Query: 315 FCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQL-- 372
+ L L + P+I+ KL +EI + +M Y+D V E R +P
Sbjct: 289 YGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLP 348
Query: 373 -----DRISVKKYKLPNTDLTLDVGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIES 427
D + Y +P GT + ++ YD + +PDPEKF PE F EN +
Sbjct: 349 HEATRD-TIFRGYLIPK-------GTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKF 400
Query: 428 RPHYTYLPFGDGPRNCIGKIL 448
+ + PF G R C G+ L
Sbjct: 401 KYSDYFKPFSTGKRVCAGEGL 421
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 92.2 bits (230), Expect = 2e-20
Identities = 82/398 (20%), Positives = 157/398 (39%), Gaps = 50/398 (12%)
Query: 73 MTPKLMVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGH--LFLSKGEYWKRLRNKL 130
P +++ + + L+ + F RG + DPI + + GE W+ LR +
Sbjct: 53 SRPVVVLCGTDAIREALVDQAEAFSGRGKIAV---VDPIFQGYGVIFANGERWRALR-RF 108
Query: 131 SPT----FTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTT 186
S F GK + + I++ + L+ +RK G +L + T+++I +
Sbjct: 109 SLATMRDFGMGK-RSVEERIQEEARCLVEELRKSKGALLDNTLLF--HSI--TSNIICSI 163
Query: 187 AFGIEINSLENPDSEFRQ-VSLLVMKPSVLQMLKAVLSELIP-LIKYL---NLKIFDP-- 239
FG + D F + + L S++ + + EL +K+ + +I+
Sbjct: 164 VFG---KRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQ 220
Query: 240 RISQFFSNLVKTNLSYREKNNIKRD--DFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQ 297
I+ F V+ + + + +N RD D + M+ K S E +
Sbjct: 221 EINTFIGQSVEKHRATLDPSNP-RDFIDVYLLRME-------KDKSDPSSEFHHQNLILT 272
Query: 298 SFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDK 357
FF G ET+S+ L + + + P + ++++EI + KM Y D
Sbjct: 273 VLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDA 332
Query: 358 VTKEALRMYPSLPQ-LDR-----ISVKKYKLPNTDLTLDVGTKISIPTF-AIHYDPEYYP 410
V E R+ +P + + Y +P T++ P + +DP Y+
Sbjct: 333 VIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPK-------NTEV-FPVLSSALHDPRYFE 384
Query: 411 DPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
P F+P F N + + ++PF G R C+G+ +
Sbjct: 385 TPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGI 422
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 73.9 bits (182), Expect = 2e-14
Identities = 54/376 (14%), Positives = 110/376 (29%), Gaps = 88/376 (23%)
Query: 78 MVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSG 137
+ T +L + +D+ HF + ++ R +
Sbjct: 65 IATRGQLIREAY-EDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMP 123
Query: 138 KIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLEN 197
+ + I++ + LI ++R Q G+ + +DY + + G+
Sbjct: 124 VVDKLENRIQELACSLIESLRPQ-GQ---CNF-TEDYAEPFPIRIFML-LAGL------- 170
Query: 198 PDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLS 254
P+ + ++ + +P L + +++
Sbjct: 171 PEEDIPHLKYLTDQMTRPDGSMTFAEAKEALY----------------DYLIPIIEQ--- 211
Query: 255 YREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLT 314
R + D ++I+ Q+ + +T D + GG +T + L+
Sbjct: 212 -RRQK--PGTDAISIVANGQV---------NGRPITSDEAKRMCGLLLVGGLDTVVNFLS 259
Query: 315 FCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLDR 374
F + LA++P+ + +L + + +E LR SL R
Sbjct: 260 FSMEFLAKSPEHRQELIER------------------PERIPAACEELLR-RFSLVADGR 300
Query: 375 ISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRP 429
I D G +I +P D P D R +
Sbjct: 301 ILTS-------DYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSR------QKVS 347
Query: 430 HYTYLPFGDGPRNCIG 445
H FG G C+G
Sbjct: 348 H---TTFGHGSHLCLG 360
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 68.0 bits (167), Expect = 1e-12
Identities = 49/329 (14%), Positives = 95/329 (28%), Gaps = 78/329 (23%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
LR + + FT + ++ L+ + + + +D T +
Sbjct: 89 VLRRQTNKWFTPKLVDGWVRTTRELVGDLLDGVE----AGQVIEA-RRDLAVVPTHVTMA 143
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
+ P+ + M + + YL
Sbjct: 144 RV-LQL-------PEDDADAVMEAMFEAMLMQSAEPADGDVDRAAVAFGYL--------- 186
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
S + +++ + N D + ++ E+T+ A VF
Sbjct: 187 SARVAEMLED----KRVN--PGDGLADSLLDAA----------RAGEITESEAIATILVF 230
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
+ G+ ++ + AR P++ + R + S + E
Sbjct: 231 YAVGHMAIGYLIASGIELFARRPEVFTAFRND------------------ESARAAIINE 272
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFD 416
+RM P R D+ + G+ I A + DPE + DP+ FD
Sbjct: 273 MVRMDPPQLSFLRFPT-------EDVEIGGVLIEAGSPIRFMIGAANRDPEVFDDPDVFD 325
Query: 417 PERFSPENIESRPHYTYLPFGDGPRNCIG 445
R + + L FG GP +C G
Sbjct: 326 HTRPPAAS----RN---LSFGLGPHSCAG 347
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 68.0 bits (167), Expect = 1e-12
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 80/329 (24%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR S FT + P I + L+ ++ K+M + + D+ + VI
Sbjct: 90 RLRTLASGAFTPRTTESYQPYIIETVHHLLDQVQ----GKKKMEV-ISDFAFPLASFVIA 144
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
G+ P+ + ++ + +++ + L+E +
Sbjct: 145 NI-IGV-------PEEDREQLKEWAASLIQTIDFTRSRKALTEGNIMAVQA--------- 187
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
+F L+ +++ + D ++++++ + + ++T++ + +
Sbjct: 188 MAYFKELI------QKRKRHPQQDMISMLLKGR----------EKDKLTEEEAASTCILL 231
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
G+ET+ ++++ + L ++P+ KLR+ + +E
Sbjct: 232 AIAGHETTVNLISNSVLCLLQHPEQLLKLREN------------------PDLIGTAVEE 273
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFD 416
LR R++ D+ + G ++ + A + DP + +P+ FD
Sbjct: 274 CLRYESPTQMTARVAS-------EDIDICGVTIRQGEQVYLLLGAANRDPSIFTNPDVFD 326
Query: 417 PERFSPENIESRPHYTYLPFGDGPRNCIG 445
R PH L FG G C+G
Sbjct: 327 ITR------SPNPH---LSFGHGHHVCLG 346
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 67.7 bits (166), Expect = 2e-12
Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 49/188 (26%)
Query: 263 RDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELAR 322
DD + +M+ +I + + D + GG +T + L+F + LAR
Sbjct: 223 GDDLITLMVNSEI---------NGERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLAR 273
Query: 323 NPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKL 382
+P++ ++LR + L + +E R +P + R+ K
Sbjct: 274 HPELVAELRSD------------------PLKLMRGAEEMFRRFP-VVSEARMVAK---- 310
Query: 383 PNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFG 437
D G I +PT D P+P K D R S H FG
Sbjct: 311 ---DQEYKGVFLKRGDMILLPTALHGLDDAANPEPWKLDFSR------RSISH---STFG 358
Query: 438 DGPRNCIG 445
GP C G
Sbjct: 359 GGPHRCAG 366
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 67.6 bits (166), Expect = 2e-12
Identities = 48/329 (14%), Positives = 98/329 (29%), Gaps = 85/329 (25%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R + S + + P ++ + +L+ ++R V D+ ++
Sbjct: 96 AFRTPVMKGLASRFVVALEPKVQAVARKLMESLR----PRGSCDF-VSDFAEILPLNIFL 150
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
T + P RQ+ + + +P ++ +
Sbjct: 151 T-LIDV-------PLEDRPRLRQLGVQLTRPDGSMTVEQLKQAAD--------------- 187
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
+ ++ R DD + ++ + T D
Sbjct: 188 -DYLWPFIEK----RMAQ--PGDDLFSRILSEPV---------GGRPWTVDEARRMCRNL 231
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
FGG +T ++++ LAR+P+ Q LR+ + E
Sbjct: 232 LFGGLDTVAAMIGMVALHLARHPEDQRLLRER------------------PDLIPAAADE 273
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFD 416
+R YP+ + R +V D+ D G + +P+ + DP + PE+
Sbjct: 274 LMRRYPT-VAVSRNAVA-------DVDADGVTIRKGDLVYLPSVLHNLDPASFEAPEEVR 325
Query: 417 PERFSPENIESRPHYTYLPFGDGPRNCIG 445
+R H G G C+G
Sbjct: 326 FDRGLAPI----RH---TTMGVGAHRCVG 347
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 66.6 bits (163), Expect = 4e-12
Identities = 55/341 (16%), Positives = 101/341 (29%), Gaps = 92/341 (26%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R + +F + ++ PLIK+ ++ L+ E + L V D+ + V
Sbjct: 123 AKRRIVVRSFIGDALDHLSPLIKQNAENLLAPYL----ERGKSDL-VNDFGKTFAVCVTM 177
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMK--------PSVLQMLKAVLSELIPLIKYLN 233
G+ + + V P +L
Sbjct: 178 D-MLGL-------DKRDHEKISEWHSGVADFITSISQSPEARAHSLWCSEQL-------- 221
Query: 234 LKIFDPRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDV 293
SQ+ ++K R N D ++I+ + + + ++D
Sbjct: 222 --------SQYLMPVIKE----RRVN--PGSDLISILCTSEY---------EGMALSDKD 258
Query: 294 ITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMS 353
I A E + L +Y L NP+ + + + S
Sbjct: 259 ILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLAD------------------RS 300
Query: 354 YLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEY 408
+ + E LR P + + R + D + T + A + DPE
Sbjct: 301 LVPRAIAETLRYKPPVQLIPRQLSQ-------DTVVGGMEIKKDTIVFCMIGAANRDPEA 353
Query: 409 YPDPEKFDPER----FSPENIESRPHYTYLPFGDGPRNCIG 445
+ P+ F+ R + H L FG G NC+G
Sbjct: 354 FEQPDVFNIHREDLGIKSAFSGAARH---LAFGSGIHNCVG 391
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 66.2 bits (162), Expect = 6e-12
Identities = 55/382 (14%), Positives = 109/382 (28%), Gaps = 94/382 (24%)
Query: 78 MVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSG 137
+ T L I + + F R + + R +
Sbjct: 66 IATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYDMVPTKLDPPEHTPYRKAIDKGLNLA 124
Query: 138 KIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLEN 197
+I+ + I+ + ++I + G ++ + V G+
Sbjct: 125 EIRKLEDQIRTIAVEIIEGFADR-GH---CEF-GSEFSTVFPVRVFLA-LAGL------- 171
Query: 198 PDS---EFRQVSLLVMKPS------VLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNL 248
P + ++ + +PS + L+A ++ + +
Sbjct: 172 PVEDATKLGLLANEMTRPSGNTPEEQGRSLEAANKGFF----------------EYVAPI 215
Query: 249 VKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYET 308
+ R D + ++ ++I D M DD + GG +T
Sbjct: 216 IAA----RRGG--SGTDLITRILNVEI---------DGKPMPDDRALGLVSLLLLGGLDT 260
Query: 309 SSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPS 368
+ L F + L+R+P+ +++R+E L + +E R +
Sbjct: 261 VVNFLGFMMIYLSRHPETVAEMRRE------------------PLKLQRGVEELFR-RFA 301
Query: 369 LPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPE 423
+ R V D+ G I +PT D ++ DP D R
Sbjct: 302 VVSDARYVVS-------DMEFHGTMLKEGDLILLPTALHGLDDRHHDDPMTVDLSR---- 350
Query: 424 NIESRPHYTYLPFGDGPRNCIG 445
H F GP C G
Sbjct: 351 --RDVTH---STFAQGPHRCAG 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 8e-12
Identities = 79/514 (15%), Positives = 143/514 (27%), Gaps = 146/514 (28%)
Query: 5 VKDYCARYTTDVIGSTAFGIEINSLENPDSEFRQVSLLF----MKPS--VLQMMKAVLSE 58
V ++ + D+ S EI+ + LF K V + ++ VL
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 59 ----LIPVIKYLNLKEAMMT-----------------PKLMVTDPELYKYI---LIKDFD 94
L+ IK + +MMT K V+ + Y + L++
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 95 H---FVDRGMG-------ELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSGKIKYMFP 144
+D G+ LD +W L+N SP ++ +
Sbjct: 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 145 LIKKCSDQLI---TTIRKQIGESKQ---MSLEVKDYCAR-------YTTDVIGTTAFGIE 191
I + I+ +I + L+ K Y AF +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLS 265
Query: 192 INSL--ENPDSEFRQVSLLVMKPSVLQMLKAVLSE---LIPLIKYLNLKIFD-PR----- 240
L +S L L+ L+KYL+ + D PR
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 241 -------ISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVE----- 288
I++ + + T +++ N K L +++ + L P +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSLNV----LEPAEYRKMFDR 377
Query: 289 ---MTDDV-ITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
I + S ++ K
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDV---------------------MVVVNK------ 410
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIHY 404
HK S ++K KE+ PS+ L+ K+ + A+H
Sbjct: 411 ----LHKYSLVEKQPKESTISIPSI-YLE------LKVKLENEY------------ALHR 447
Query: 405 D-PEYYPDPEKFDPERFSPENIESRPHYTYLPFG 437
++Y P+ FD + P ++ Y Y G
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQ---YFYSHIG 478
Score = 57.2 bits (137), Expect = 7e-09
Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 115/422 (27%)
Query: 95 HFVDRGMGELDAKRDPIAGHL---FLSKGEYWKRLRNKLSPTFTSGKIKYMF--PLIKKC 149
H +D GE + I F+ + K +++ + +I ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 150 SDQLITTIRKQIGESKQMSLEV---KDY---CARYTTDVIG----TTAFGIEINSLENPD 199
+ +L T+ + E Q +E +Y + T+ T + + + L N +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 200 SEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNL-------K-------IFDPRISQFF 245
F + + V + L+ L EL P K + + K ++
Sbjct: 124 QVFAKYN--VSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 246 SNLV-----------------KTNLSYR-EKNNIKRDDFL-NIMMQLQIAQRGKT----- 281
+ L Y+ + N R D NI +++ Q
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 282 -------LSPDDVEMTDD-----------VITAQSFVFFFGGYETSSSV------LTFCL 317
L +V+ + T V F T++ + +T
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 318 YE----LARNPDIQ-SKLRQE----------IMATKKKEGELTYEICHKMSYLDKVTKEA 362
E L + D + L +E I+A ++G T++ V +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKHVNCDK 354
Query: 363 LR--MYPSLPQLDRISVKK-YKLPNTDLT-LDVGTKISIPTFAIHYDPEYYPDPEKFDPE 418
L + SL L+ +K + L+ I ++ + D K D
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSL-----IWFDVIKSDVM 405
Query: 419 RF 420
Sbjct: 406 VV 407
Score = 29.4 bits (65), Expect = 3.3
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 43/158 (27%)
Query: 286 DVEMTD------DVITA--QSFVFFFGGYETS---SSVLTFCLY-ELARNPDIQSKLRQE 333
D E + D+++ +FV F + S+L+ + + D S +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR- 66
Query: 334 IMATKKKEGELTYEICHKMSYLDKVTKEALRM-YPSLPQLDRISVKKYKLPNTDLTLDVG 392
+ T + E + K +E LR+ Y L + I + + P+ +
Sbjct: 67 LFWTLLSKQEEMVQ---------KFVEEVLRINYKFL--MSPIK-TEQRQPSMMTRM--- 111
Query: 393 TKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPH 430
Y D D + F+ N+ SR
Sbjct: 112 -----------Y--IEQRDRLYNDNQVFAKYNV-SRLQ 135
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 65.4 bits (160), Expect = 1e-11
Identities = 59/329 (17%), Positives = 110/329 (33%), Gaps = 75/329 (22%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR +S F IK + P I DQL+ + + + +L + + VI
Sbjct: 107 RLRGLVSKAFAPRVIKRLEPEITALVDQLLDAV-----DGPEFNL-IDNLAYPLPVAVIC 160
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
G+ P +F + S L+ + + + +
Sbjct: 161 RL-LGV-------PIEDEPKFSRASALLAAALDPFLALTGETSDLFDEQMKAGMWL---- 208
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
+ L+ E+ +D ++ ++ ++ ++T+D I A +
Sbjct: 209 RDYLRALI------DERRRTPGEDLMSGLVAVEE---------SGDQLTEDEIIATCNLL 253
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
G+ET+ +++ + R P + L + S V +E
Sbjct: 254 LIAGHETTVNLIANAALAMLRTPGQWAALAAD------------------GSRASAVIEE 295
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFD 416
+R P + + R + DLT+ G + + A H DP P++FD
Sbjct: 296 TMRYDPPVQLVSRYAG-------DDLTIGTHTVPKGDTMLLLLAAAHRDPTIVGAPDRFD 348
Query: 417 PERFSPENIESRPHYTYLPFGDGPRNCIG 445
P+R H L FG G C+G
Sbjct: 349 PDR------AQIRH---LGFGKGAHFCLG 368
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 63.8 bits (156), Expect = 3e-11
Identities = 66/335 (19%), Positives = 123/335 (36%), Gaps = 95/335 (28%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR +S FT +++ M P +++ + +L+ + +S + + V + VI
Sbjct: 100 RLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVG----DSGVVDI-VDRFAHPLPIKVIC 154
Query: 185 TTAFGIEINSLENPDSE---FRQVS--LLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDP 239
G+ + F + S +LVM P + E++
Sbjct: 155 EL-LGV-------DEKYRGEFGRWSSEILVMDPERAEQRGQAAREVV------------- 193
Query: 240 RISQFFSNLVKTNLSYREKNNIKR----DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVIT 295
F +LV+ +R DD L+ +++ Q DD ++ D +T
Sbjct: 194 ---NFILDLVER----------RRTEPGDDLLSALIR---VQDD-----DDGRLSADELT 232
Query: 296 AQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYL 355
+ + V G+E S S++ Y L +PD + +R++ S L
Sbjct: 233 SIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRD------------------PSAL 274
Query: 356 DKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYP 410
+E LR R + ++ + + + + A + DP+ +P
Sbjct: 275 PNAVEEILRYIAPPETTTRFAA-------EEVEIGGVAIPQYSTVLVANGAANRDPKQFP 327
Query: 411 DPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
DP +FD R ++R H L FG G C+G
Sbjct: 328 DPHRFDVTR------DTRGH---LSFGQGIHFCMG 353
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 63.8 bits (156), Expect = 3e-11
Identities = 59/336 (17%), Positives = 105/336 (31%), Gaps = 94/336 (27%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR + P F+ ++ + P+I D L+ M + V + +
Sbjct: 89 RLRGVVGPAFSPSALRRLEPVIAGTVDDLLRPAL----ARGAMDV-VDELAYPLALRAVL 143
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMK-------PSVLQMLKAVLSELIPLIKYLNL 234
G+ P ++ + S V + ++ A ++E
Sbjct: 144 GL-LGL-------PAADWGAVGRWSRDVGRTLDRGASAEDMRRGHAAIAEF--------- 186
Query: 235 KIFDPRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVI 294
+ + + + +D L +M + D M+ + I
Sbjct: 187 -------ADYVERAL------ARRRREGGEDLLALM----LDAH------DRGLMSRNEI 223
Query: 295 TAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSY 354
+ F F G+ET +S + + L +PD LR+
Sbjct: 224 VSTVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRR------------------PDL 265
Query: 355 LDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYY 409
L + +E LR PS+ R D+ L + + A + DP Y
Sbjct: 266 LAQAVEECLRYDPSVQSNTRQLD-------VDVELRGRRLRRDDVVVVLAGAANRDPRRY 318
Query: 410 PDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
P+ FD ER + P + FG G R C+G
Sbjct: 319 DRPDDFDIER------DPVPS---MSFGAGMRYCLG 345
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 63.4 bits (155), Expect = 5e-11
Identities = 53/330 (16%), Positives = 104/330 (31%), Gaps = 76/330 (23%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R+R ++P+FTS I + I++ DQL+ ++ + V+DY I
Sbjct: 105 RVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARS----GQEEFDV-VRDYAEGIPMRAIS 159
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
+ P +FR+ + + ++ V E L+ +
Sbjct: 160 AL-LKV-------PAECDEKFRRFGSATARALGVGLVPRVDEETKTLVASVT------EG 205
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
++ + N +D L +++Q + D ++ + A
Sbjct: 206 LALLHGVLD-----ERRRNPLENDVLTMLLQAEA---------DGSRLSTKELVALVGAI 251
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
G +T+ ++ F + L R+P+ ++ E + E
Sbjct: 252 IAAGTDTTIYLIAFAVLNLLRSPEALELVKAE------------------PGLMRNALDE 293
Query: 362 ALRMYPSLP-QLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKF 415
LR L R + DL G + + + D + P+ F
Sbjct: 294 VLRFDNILRIGTVRFAR-------QDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVF 346
Query: 416 DPERFSPENIESRPHYTYLPFGDGPRNCIG 445
D R ++ L +G GP C G
Sbjct: 347 DVRR------DTSAS---LAYGRGPHVCPG 367
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 63.4 bits (155), Expect = 5e-11
Identities = 58/335 (17%), Positives = 109/335 (32%), Gaps = 85/335 (25%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R +SP + + I++ + + + ++ V TT ++
Sbjct: 121 EQRKAVSPIVAPANLAALEGTIRERVSKTLDGLP----VGEEFDW-VDRVSIEITTQMLA 175
Query: 185 TTAFGIEINSLENPDSEFRQVSLLVMK------PSVLQMLKAVLSELIPLIKYLNLKIFD 238
T F P E R+++ V++ +EL+ Y
Sbjct: 176 T-LFDF-------PFEERRKLTRWSDVTTAAPGGGVVESWDQRKTELLECAAY------- 220
Query: 239 PRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQS 298
F L R + +D ++++ SP MT +
Sbjct: 221 ------FQVLWNE----RVNKD-PGNDLISMLAH----------SPATRNMTPEEYLGNV 259
Query: 299 FVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKV 358
+ GG +T+ + +T + L +NPD +KL+ + ++ +
Sbjct: 260 LLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKAN------------------PALVETM 301
Query: 359 TKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPE 413
E +R L + R ++ D L G K+ + ++ + D E PE
Sbjct: 302 VPEIIRWQTPLAHMRRTAIA-------DSELGGKTIRKGDKVVMWYYSGNRDDEVIDRPE 354
Query: 414 KFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
+F +R P R H L FG G C+G L
Sbjct: 355 EFIIDRPRP-----RQH---LSFGFGIHRCVGNRL 381
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 63.0 bits (154), Expect = 6e-11
Identities = 56/334 (16%), Positives = 117/334 (35%), Gaps = 94/334 (28%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR + +FT ++ + P I + +D L+ + + L +++Y + VI
Sbjct: 97 RLRKLVGRSFTVRRMNELEPRITEIADGLLAGLP----TDGPVDL-MREYAFQIPVQVIC 151
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
G+ P + F S +++ S A + +L
Sbjct: 152 EL-LGV-------PAEDRDDFSAWSSVLVDDSPADDKNAAMGKLH--------------- 188
Query: 242 SQFFSNLVKTNLSYREKNNIKR----DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQ 297
+ S+L++ KR D L+ + +A D ++ + + A
Sbjct: 189 -GYLSDLLER----------KRTEPDDALLSSL----LAVSD----EDGDRLSQEELVAM 229
Query: 298 SFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDK 357
+ + G+ET+ +++ + L +PD + L ++ S +
Sbjct: 230 AMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAED------------------PSLISS 271
Query: 358 VTKEALRMYPSLPQL-DRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPD 411
+E LR + Q R + D+T G + + A + D ++ P+
Sbjct: 272 AVEEFLRFDSPVSQAPIRFTA-------EDVTYSGVTIPAGEMVMLGLAAANRDADWMPE 324
Query: 412 PEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
P++ D R ++ + FG G C+G
Sbjct: 325 PDRLDITR------DASGG---VFFGHGIHFCLG 349
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 63.0 bits (154), Expect = 6e-11
Identities = 60/369 (16%), Positives = 117/369 (31%), Gaps = 93/369 (25%)
Query: 89 LIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSGKIKYMFPLIKK 148
L D+ H + R +A L R R L P+F ++ + P ++
Sbjct: 68 LSSDWGHPDFPVVVRRTEDRGGLAFPLIGVDDPVHARQRRMLIPSFGVKRMNAIRPRLQS 127
Query: 149 CSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLENPDS---EFRQV 205
D+L+ + + G L V + + I G+ P F +
Sbjct: 128 LVDRLLDDMLAK-GPG--ADL-VSAFALPVPSVAICEL-LGV-------PYGDHDFFEEC 175
Query: 206 SLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLSYREKNNIKR-- 263
S + + A EL + LV K+
Sbjct: 176 SRNFVGAATSAEADAAFGELY----------------TYLHGLVGR----------KQAE 209
Query: 264 --DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELA 321
D L+ + IA++ ++ ++ D + + V G+ET+ + + L
Sbjct: 210 PEDGLLDEL----IARQL-----EEGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLI 260
Query: 322 RNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYK 381
++P+ L ++ + V +E LR + R++
Sbjct: 261 QHPEQIDVLLRD------------------PGAVSGVVEELLRFTSVSDHIVRMAK---- 298
Query: 382 LPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPF 436
D+ + G + + ++ D + Y +P+ FD R +R H + F
Sbjct: 299 ---EDIEVGGATIKAGDAVLVSITLMNRDAKAYENPDIFDARR------NARHH---VGF 346
Query: 437 GDGPRNCIG 445
G G C+G
Sbjct: 347 GHGIHQCLG 355
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 63.0 bits (154), Expect = 6e-11
Identities = 43/363 (11%), Positives = 103/363 (28%), Gaps = 87/363 (23%)
Query: 91 KDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSGKIKYMFPLIKKCS 150
++ F ++G+ + + K+ R ++ F+ +++ +
Sbjct: 60 QNTKAFSNKGVTFPRYETGEFELMMAGQDDPVHKKYRQLVAKPFSPEATDLFTEQLRQST 119
Query: 151 DQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLENPDSE---FRQVSL 207
+ LI E + + G+ P + +R+
Sbjct: 120 NDLIDARI----ELGEGDA-ATWLANEIPARLTAI-LLGL-------PPEDGDTYRRWVW 166
Query: 208 LVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLSYREKNNIKRDDFL 267
+ + + +EL+ L+ R N +D +
Sbjct: 167 AITHVENPEEGAEIFAELV----------------AHARTLIA----ERRTN--PGNDIM 204
Query: 268 NIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQ 327
+ ++ +I D +++D + + GG + ++ L+ + LA + +++
Sbjct: 205 SRVIMSKI---------DGESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELR 255
Query: 328 SKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDL 387
+L + E LR Y + R+ + ++
Sbjct: 256 RRLIAH------------------PELIPNAVDELLRFYGPA-MVGRLVTQ-------EV 289
Query: 388 TLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRN 442
T+ G + D + P+ ER H L G G
Sbjct: 290 TVGDITMKPGQTAMLWFPIASRDRSAFDSPDNIVIER------TPNRH---LSLGHGIHR 340
Query: 443 CIG 445
C+G
Sbjct: 341 CLG 343
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 62.7 bits (153), Expect = 8e-11
Identities = 62/336 (18%), Positives = 116/336 (34%), Gaps = 91/336 (27%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
+LR ++P F++ ++ M P ++ L+ + ++ + + L ++ VIG
Sbjct: 97 KLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLA-ELPAGEPVDL-RQELAYPLPIAVIG 154
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMKPSV-LQMLKAVLSELIPLIKYLNLKIFDPR 240
G+ P FR + V ++ +A + L
Sbjct: 155 HL-MGV-------PQDRRDGFRALVDGVFDTTLDQAEAQANTARLY-------------- 192
Query: 241 ISQFFSNLVKTNLSYREKNNIKR----DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITA 296
+ L+ KR DD +++ IA R D ++ + +
Sbjct: 193 --EVLDQLIAA----------KRATPGDDMTSLL----IAARDDEGDGD--RLSPEELRD 234
Query: 297 QSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLD 356
+ GYET+ +V+ ++ L PD + +R+
Sbjct: 235 TLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKG------------------EVTWA 276
Query: 357 KVTKEALRMYPSLPQL-DRISVKKYKLPNTDLTLDVGTKIS------IPTFAIHYDPEYY 409
V +E LR P++ L R +V TD+ L G I+ A + P+++
Sbjct: 277 DVVEETLRHEPAVKHLPLRYAV-------TDIALPDGRTIARGEPILASYAAANRHPDWH 329
Query: 410 PDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
D + FD R + H L FG G C+G
Sbjct: 330 EDADTFDATR------TVKEH---LAFGHGVHFCLG 356
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 61.9 bits (151), Expect = 1e-10
Identities = 51/330 (15%), Positives = 109/330 (33%), Gaps = 81/330 (24%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R +S FT +++ + P ++K + + +R + + V + + V+
Sbjct: 106 EFRKLVSRGFTPRQVETVEPTVRKFVVERLEKLR----ANGGGDI-VTELFKPLPSMVVA 160
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
G+ P+ + F + ++ + + + + +
Sbjct: 161 H-YLGV-------PEEDWTQFDGWTQAIVAANAVDGATTGALDAVG------------SM 200
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
+F+ L++ R DD ++ ++ + G T I A +F
Sbjct: 201 MAYFTGLIE----RRRTE--PADDAISHLVAAGVGADGDTAGTLS-------ILAFTFTM 247
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
GG +T + +L + L R PD + L + + +E
Sbjct: 248 VTGGNDTVTGMLGGSMPLLHRRPDQRRLLLDD------------------PEGIPDAVEE 289
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPE-YYPDPEKF 415
LR+ + L R + + D+T+ G ++ + + + D Y PD +
Sbjct: 290 LLRLTSPVQGLARTTTR-------DVTIGDTTIPAGRRVLLLYGSANRDERQYGPDAAEL 342
Query: 416 DPERFSPENIESRPHYTYLPFGDGPRNCIG 445
D R R L F G +C+G
Sbjct: 343 DVTR------CPRNI---LTFSHGAHHCLG 363
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 61.1 bits (149), Expect = 2e-10
Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 43/170 (25%)
Query: 284 PDDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGE 343
P ++D++ FF G ++ S LT L L + P +++ L ++
Sbjct: 213 PAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLHEK---------- 262
Query: 344 LTYEICHKMSYLDKVTKEALRMYPSLPQ--LDRISVKKYKLPNTDLTLDVGTKIS----- 396
+ +E LR L R++ D+ + +
Sbjct: 263 --------PELIPAGVEELLR-INLSFADGLPRLAT-------ADIQVG-DVLVRKGELV 305
Query: 397 -IPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ ++DPE++P+P + +R +P H L FG G C G
Sbjct: 306 LVLLEGANFDPEHFPNPGSIELDRPNP-----TSH---LAFGRGQHFCPG 347
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 61.1 bits (149), Expect = 3e-10
Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 94/337 (27%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
LR+ L+ F+ + + P I + + L+ +R ++ L V+ + A VI
Sbjct: 108 ELRSLLTTEFSPSIVTGLRPRIAELASALLDRLR----AQRRPDL-VEGFAAPLPILVIS 162
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMK--------PSVLQMLKAVLSELIPLIKYLN 233
GI P+ R ++ + + +A E
Sbjct: 163 AL-LGI-------PEEDHTWLRANAVALQEASTTRARDGRGYARAEAASQEF-------- 206
Query: 234 LKIFDPRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDV 293
+++F V + RDD L ++++ + ++ D
Sbjct: 207 --------TRYFRREV------DRRGGDDRDDLLTLLVRARD---------TGSPLSVDG 243
Query: 294 ITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMS 353
I G+ET+++ L + L + D+ +LR
Sbjct: 244 IVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTT------------------PE 285
Query: 354 YLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEY 408
+E +R P + + R + D+ L G+++ + + DP
Sbjct: 286 STPAAVEELMRYDPPVQAVTRWAY-------EDIRLGDHDIPRGSRVVALLGSANRDPAR 338
Query: 409 YPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+PDP+ D R + + FG G C+G
Sbjct: 339 FPDPDVLDVHR------AAERQ---VGFGLGIHYCLG 366
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 60.4 bits (147), Expect = 4e-10
Identities = 62/334 (18%), Positives = 114/334 (34%), Gaps = 92/334 (27%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR ++ FT +++ + P +++ D L+ + L ++ VI
Sbjct: 122 RLRKLVAREFTMRRVELLRPRVQEIVDGLVDAMLAAPDGR--ADL-MESLAWPLPITVIS 178
Query: 185 TTAFGIEINSLENPDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
G+ P+ FR + + P + ++E+
Sbjct: 179 EL-LGV-------PEPDRAAFRVWTDAFVFPDDPAQAQTAMAEMS--------------- 215
Query: 242 SQFFSNLVKTNLSYREKNNIKR----DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQ 297
+ S L+ + KR +D L+ + + D +T + +
Sbjct: 216 -GYLSRLIDS----------KRGQDGEDLLSAL----VRTSD----EDGSRLTSEELLGM 256
Query: 298 SFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDK 357
+ + G+ET+ +++ +Y L +PD + LR + M+ LD
Sbjct: 257 AHILLVAGHETTVNLIANGMYALLSHPDQLAALRAD------------------MTLLDG 298
Query: 358 VTKEALRMYPSLPQ-LDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPD 411
+E LR + R V + LD G + + H PE +PD
Sbjct: 299 AVEEMLRYEGPVESATYRFPV-------EPVDLDGTVIPAGDTVLVVLADAHRTPERFPD 351
Query: 412 PEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
P +FD R ++ H L FG G CIG
Sbjct: 352 PHRFDIRR------DTAGH---LAFGHGIHFCIG 376
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 60.0 bits (146), Expect = 5e-10
Identities = 49/331 (14%), Positives = 95/331 (28%), Gaps = 86/331 (25%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R R LS + +K + +D I + + + + D Y V
Sbjct: 109 RTRAVLSKVLSPATMKRLRDGFAAAADAKIDEL---LARGGNIDA-IADLAEAYPLSVFP 164
Query: 185 TTAFGIEINSLENPDSE---FRQVS--LLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDP 239
A G+ + + ++ ++ + P Y+ + P
Sbjct: 165 D-AMGL-------KQEGRENLLPYAGLVFNAFGPPNELRQSAIERSAPHQAYVAEQCQRP 216
Query: 240 RISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSF 299
+ D E+T +
Sbjct: 217 N---------------------LAPGGFGACIHAFS---------DTGEITPEEAPLLVR 246
Query: 300 VFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVT 359
G +T+ + + +Y LAR PD ++LR + S
Sbjct: 247 SLLSAGLDTTVNGIAAAVYCLARFPDEFARLRAD------------------PSLARNAF 288
Query: 360 KEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEK 414
+EA+R + R + D+ L G K+ + + + DP + DP++
Sbjct: 289 EEAVRFESPVQTFFRTTT-------RDVELAGATIGEGEKVLMFLGSANRDPRRWDDPDR 341
Query: 415 FDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+D R ++ H + FG G C+G
Sbjct: 342 YDITR------KTSGH---VGFGSGVHMCVG 363
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 59.6 bits (145), Expect = 8e-10
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 41/168 (24%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+++ + + GYE++++ + +Y L P+++ +L
Sbjct: 235 QQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRPELRRQLLDR----------- 283
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQ--LDRISVKKYKLPNTDLTLD-----VGTKISI 397
+ +E R P R +V D+TL G +
Sbjct: 284 -------PELIPSAVEELTRWVPLGVGTAFPRYAV-------EDVTLRGVTIRAGEPVLA 329
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
T A + D +PD ++ D +R H L FG G +C+G
Sbjct: 330 STGAANRDQAQFPDADRIDVDR------TPNQH---LGFGHGVHHCLG 368
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 59.3 bits (144), Expect = 9e-10
Identities = 48/332 (14%), Positives = 110/332 (33%), Gaps = 81/332 (24%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR+ +S FT + + ++ + +L++++ +Q L V + +I
Sbjct: 127 RLRSIVSRAFTPKVVARIEAAVRDRAHRLVSSMIAN-NPDRQADL-VSELAGPLPLQIIC 184
Query: 185 TTAFGIEINSLENPDSEFRQV---SLLVMK---PSVLQMLKAVLSELIPLIKYLNLKIFD 238
GI P ++ +++ + +++ P + + + Y
Sbjct: 185 D-MMGI-------PKADHQRIFHWTNVILGFGDPDLATDFDEFMQVSADIGAY------- 229
Query: 239 PRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQS 298
+ L ++ DD + +++ ++ D ++ I +
Sbjct: 230 ------ATALA------EDRRVNHHDDLTSSLVEAEV---------DGERLSSREIASFF 268
Query: 299 FVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKV 358
+ G ET+ + +T + L+R P+ + + +
Sbjct: 269 ILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSD-----------------FDGLAPTA 311
Query: 359 TKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPE 413
+E +R + + R + D+ L G K+S+ + + D + DP
Sbjct: 312 VEEIVRWASPVVYMRRTLTQ-------DIELRGTKMAAGDKVSLWYCSANRDESKFADPW 364
Query: 414 KFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
FD R PH + G G C+G
Sbjct: 365 TFDLAR------NPNPHLGF--GGGGAHFCLG 388
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 59.3 bits (144), Expect = 1e-09
Identities = 62/332 (18%), Positives = 113/332 (34%), Gaps = 75/332 (22%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
+LR F + + I+K +++ I + GE + A Y V+
Sbjct: 134 KLRRLTQDWFMPKNLARLDGEIRKIANEAIDRMLGA-GEEGDF---MALVAAPYPLHVVM 189
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
G+ P + ++ + M K+ L +L P +
Sbjct: 190 Q-ILGV-------PPEDEPKMLFLTQQMFGGQDEDMNKSGLKDLPPEQISQIVAGAVAEF 241
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
++F+ L E+ DD ++ + D M+D +
Sbjct: 242 ERYFAGLA------AERRRNPTDDVATVIANAVV---------DGEPMSDRDTAGYYIIT 286
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
G++T+S+ LAR+PD+ ++++ + + L + +E
Sbjct: 287 ASAGHDTTSASSAGAALALARDPDLFARVKAD------------------RNLLPGIVEE 328
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLDVGTKI--------SIPTFAIHYDPEYYPDPE 413
A+R + R + TD L G KI + A ++DP +P+P
Sbjct: 329 AIRWTTPVQHFMRTAA-------TDTELC-GQKIAAGDWLMLNYV--AANHDPAQFPEPR 378
Query: 414 KFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
KFDP R + H L FG G C+G
Sbjct: 379 KFDPTR------PANRH---LAFGAGSHQCLG 401
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 59.2 bits (144), Expect = 1e-09
Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+ TD+ + G + S ++ + + R+P+ R +
Sbjct: 217 YGDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGD----------- 265
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQ--LDRISVKKYKLPNTDLTLD-----VGTKISI 397
+ E +R Y ++P RI+ DLTL G +
Sbjct: 266 -------EQSAQRAVDELIR-YLTVPYSPTPRIAR-------EDLTLAGQEIKKGDSVIC 310
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
A + DP PD ++ D R E PH + FG G +C+G
Sbjct: 311 SLPAANRDPALAPDVDRLDVTR------EPIPH---VAFGHGVHHCLG 349
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 58.8 bits (143), Expect = 1e-09
Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 43/169 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+D E+T+D + + F G ++ +S++ + LA +PD ++ +
Sbjct: 222 NDGELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALAD----------- 270
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQ---LDRISVKKYKLPNTDLTLD-----VGTKIS 396
+ + +E LR R + D+ G +
Sbjct: 271 -------PDVMARAVEEVLR-TARAGGSVLPPRYAS-------EDMEFGGVTIRAGDLVL 315
Query: 397 IPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
++D + PE+FD R PH L FG G +CIG
Sbjct: 316 FDLGLPNFDERAFTGPEEFDAAR------TPNPH---LTFGHGIWHCIG 355
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 58.8 bits (143), Expect = 1e-09
Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 37/166 (22%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
D + D+ S G+ T++ +L + L +P ++
Sbjct: 222 DGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAED----------- 270
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPT 399
+ + +E LR P PQ+ R + K + ++
Sbjct: 271 -------PGRIPAIVEEVLRYRPPFPQMQRTTTK-------ATEVAGVPIPADVMVNTWV 316
Query: 400 FAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ + D + + DP++FDP R L FG G C+G
Sbjct: 317 LSANRDSDAHDDPDRFDPSR----KSGGAAQ---LSFGHGVHFCLG 355
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 58.4 bits (142), Expect = 1e-09
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 39/166 (23%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
D ++DD + ++ + GG ET+ L+ +L RN D L+++
Sbjct: 211 DGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRD----------- 259
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPT 399
S L +E LR + + R+ D G K+ +
Sbjct: 260 -------PSLLPGAIEEMLRWTAPVKNMCRVLT-------ADTEFHGTALCAGEKMMLLF 305
Query: 400 FAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ ++D + +PEKFD +R H L FG G C+G
Sbjct: 306 ESANFDEAVFCEPEKFDVQR------NPNSH---LAFGFGTHFCLG 342
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 58.4 bits (142), Expect = 2e-09
Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+ E+ + + + + + G+ET++S+ + + L +P+ + LR +
Sbjct: 225 ANGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPEQYAALRAD----------- 273
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQL--DRISVKKYKLPNTDLTLD-----VGTKISI 397
S + +E LR Y ++ + R++ D+ ++ G + +
Sbjct: 274 -------RSLVPGAVEELLR-YLAIADIAGGRVAT-------ADIEVEGQLIRAGEGVIV 318
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ D Y DP+ D R +R H L FG G C+G
Sbjct: 319 VNSIANRDGTVYEDPDALDIHR------SARHH---LAFGFGVHQCLG 357
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 58.4 bits (142), Expect = 2e-09
Identities = 57/372 (15%), Positives = 115/372 (30%), Gaps = 92/372 (24%)
Query: 89 LIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSGKIKYMFPLIKK 148
L K + + R+ + PTFT +K + P I++
Sbjct: 61 LSKVRTRQGFPELSASGKQAAKAKPTFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQR 120
Query: 149 CSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLENPDS---EFRQV 205
D L+ ++++ + + L VK++ + +I T G+ P + Q
Sbjct: 121 TVDDLLEQMKQKGCANGPVDL-VKEFALPVPSYIIYTL-LGV-------PFNDLEYLTQQ 171
Query: 206 S-LLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLSYREKNNIKR- 263
+ + S + A EL+ + + LV+ +
Sbjct: 172 NAIRTNGSSTAREASAANQELL----------------DYLAILVEQ----------RLV 205
Query: 264 ---DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYEL 320
DD ++ + Q+ + +F+ G T +++ + L
Sbjct: 206 EPKDDIISKLCTEQV---------KPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATL 256
Query: 321 ARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLD--RISVK 378
A++PD ++L+ S + +E R Y + L R +
Sbjct: 257 AQHPDQLAQLKAN------------------PSLAPQFVEELCR-YHTASALAIKRTAK- 296
Query: 379 KYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTY 433
D+ + I + + D E + +P++F+ R P
Sbjct: 297 ------EDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPPQ----DP--- 343
Query: 434 LPFGDGPRNCIG 445
L FG G CI
Sbjct: 344 LGFGFGDHRCIA 355
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 58.0 bits (141), Expect = 2e-09
Identities = 53/330 (16%), Positives = 104/330 (31%), Gaps = 98/330 (29%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R+ +P F KI I++ S+ LI K I + + +Y R ++I
Sbjct: 57 EFRDISAPYFLPSKINDYKDFIEETSNDLI----KNIDN---KDI-ISEYAVRLPVNIIS 108
Query: 185 TTAFGIEINSLENPDSE---FRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
GI PDS+ F+ S ++ + V + ++ +
Sbjct: 109 KI-LGI-------PDSDMPLFKLWSDYIIGNKRDENFNYVNNRMVSRL------------ 148
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
E +N++ + + ++T D +
Sbjct: 149 --------------LEIFKSDSHGIINVLAGSSL---------KNRKLTMDEKIKYIMLL 185
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
GG ET+++++ + + NPDI + +E
Sbjct: 186 IIGGNETTTNLIGNMIRVIDENPDIIDDALKNR---------------------SGFVEE 224
Query: 362 ALRMYPSLPQLD-RISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKF 415
LR Y + L R + + D ++ G ++ + + + D ++ +P+ F
Sbjct: 225 TLRYYSPIQFLPHRFAAE-------DSYINNKKIKKGDQVIVYLGSANRDETFFDEPDLF 277
Query: 416 DPERFSPENIESRPHYTYLPFGDGPRNCIG 445
R H L FG G C+G
Sbjct: 278 KIGR-------REMH---LAFGIGIHMCLG 297
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 58.4 bits (142), Expect = 2e-09
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
D + D + + ++T++ ++ L +PD + LR++
Sbjct: 218 PDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLRED----------- 266
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQL--DRISVKKYKLPNTDLTLD-----VGTKISI 397
S + +E LR Y ++ Q +R++ D+ L G ++
Sbjct: 267 -------PSLVGNAVEELLR-YLTIGQFGGERVAT-------RDVELGGVRIAKGEQVVA 311
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
A +DP + +PE+FD R PH L FG G CIG
Sbjct: 312 HVLAADFDPAFVEEPERFDITR------RPAPH---LAFGFGAHQCIG 350
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 58.1 bits (141), Expect = 2e-09
Identities = 51/335 (15%), Positives = 100/335 (29%), Gaps = 75/335 (22%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
R F I+ + I++ + + + GE + D Y V+
Sbjct: 112 AYRGLTLNWFQPASIRKLEENIRRIAQASVQRLLDFDGE---CDF-MTDCALYYPLHVVM 167
Query: 185 TTAFGIEINSLENPDSEFRQV---SLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRI 241
T A G+ P+ + + +
Sbjct: 168 T-ALGV-------PEDDEPLMLKLTQDFFGVHEPDEQAVAAPRQSADEAARRFHETIATF 219
Query: 242 SQFFSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVF 301
+F+ R +DD ++++ ++ D + D I A
Sbjct: 220 YDYFNGFTVD----RRSCP--KDDVMSLLANSKL---------DGNYIDDKYINAYYVAI 264
Query: 302 FFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKE 361
G++T+SS + L+RNP+ + + + + + ++ E
Sbjct: 265 ATAGHDTTSSSSGGAIIGLSRNPEQLALAKSD------------------PALIPRLVDE 306
Query: 362 ALRMYPSLPQLDRISVKKYKLPNTDLTLDVGTKISIP---TFAIHY-----DPEYYPDPE 413
A+R + R ++ D + G I + Y D E + +P+
Sbjct: 307 AVRWTAPVKSFMRTALA-------DTEVR-GQNI--KRGDRIMLSYPSANRDEEVFSNPD 356
Query: 414 KFDPERFSPENIESRPHYTYLPFGDGPRNCIGKIL 448
+FD R H L FG G C+G+ L
Sbjct: 357 EFDITR------FPNRH---LGFGWGAHMCLGQHL 382
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 57.4 bits (139), Expect = 3e-09
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 44/161 (27%)
Query: 290 TDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEIC 349
D + A F G E +++ + + ++ P + ++ +
Sbjct: 213 ADPALRA-----LFAGAEMTANTVVDAVLAVSAEPGLAERIADD---------------- 251
Query: 350 HKMSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHY 404
+ + E LR++P+L R + ++ L G ++ + A +
Sbjct: 252 --PAAAQRTVAEVLRLHPALHLERRTAT-------AEVRLGEHVIGEGEEVVVVVAAANR 302
Query: 405 DPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
DPE + +P++ D +R
Sbjct: 303 DPEVFAEPDRLDVDR------PDADR---ALSAHRGHPGRL 334
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 57.6 bits (140), Expect = 3e-09
Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+ + + + +F+ G+ET++++++ + L +P+ + ++
Sbjct: 226 QEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVVKAN----------- 274
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQL--DRISVKKYKLPNTDLTLD-----VGTKISI 397
+E LR Y ++ R++ D+ + G + +
Sbjct: 275 -------PGRTPMAVEELLR-YFTIADGVTSRLAT-------EDVEIGGVSIKAGEGVIV 319
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ ++DP + DP D ER +R H L FG GP C+G
Sbjct: 320 SMLSANWDPAVFKDPAVLDVER------GARHH---LAFGFGPHQCLG 358
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 56.9 bits (138), Expect = 5e-09
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+T + + + + G ET++S++ L P++ ++LR++
Sbjct: 230 VPGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRPELPAELRKD----------- 278
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQL--DRISVKKYKLPNTDLTLD-----VGTKISI 397
+ E LR S+ R++ D+ L +
Sbjct: 279 -------PDLMPAAVDELLR-VLSVADSIPLRVAA-------EDIELSGRTVPADDGVIA 323
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
++DPE + DPE+ D R H + FG G C+G
Sbjct: 324 LLAGANHDPEQFDDPERVDFHR------TDNHH---VAFGYGVHQCVG 362
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 56.9 bits (138), Expect = 5e-09
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+TD+ + GG ET + ++ F + L NP L +
Sbjct: 226 HGDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQIELLFES----------- 274
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQL--DRISVKKYKLPNTDLTLD-----VGTKISI 397
++V E +R Y S Q R+++ D+ +D G +
Sbjct: 275 -------PEKAERVVNELVR-YLSPVQAPNPRLAI-------KDVVIDGQLIKAGDYVLC 319
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ D PDP+ D R + + FG G C+G
Sbjct: 320 SILMANRDEALTPDPDVLDANR------AAVSD---VGFGHGIHYCVG 358
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 56.1 bits (136), Expect = 9e-09
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
E+ + + GG + + + LY L ++ +++R+
Sbjct: 226 GRGEVGETEAVGLAGPLQIGGEAVTHN-VGQMLYLLLTRRELMARMRER----------- 273
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQ--LDRISVKKYKLPNTDLTLD-----VGTKISI 397
E LR L RI++ D+ + G + +
Sbjct: 274 -------PGARGTALDELLRWISHRTSVGLARIAL-------EDVEVHGTRIAAGEPVYV 319
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
A + DP+ +PDP++ D +R + PH L +G+G C G
Sbjct: 320 SYLAANRDPDVFPDPDRIDLDR------DPNPH---LAYGNGHHFCTG 358
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 56.1 bits (136), Expect = 1e-08
Identities = 63/370 (17%), Positives = 118/370 (31%), Gaps = 89/370 (24%)
Query: 89 LIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSGKIKYMFPLIKK 148
LI F VD RD + L G +RLR + FT +I + P ++
Sbjct: 74 LISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADHRRLRGLATHPFTPRRITAVQPFVRS 133
Query: 149 CSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLENPDSE---FRQV 205
+QLI + V+ + V+ G P + ++
Sbjct: 134 TVEQLIDKL-----PQGDFDF-VQHFPHPLPALVMCQL-LGF-------PLEDYDTVGRL 179
Query: 206 SLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLSYREKNNIKR-- 263
S+ L + +L ++ + + + ++ ++
Sbjct: 180 SIETNLGLALSNDQDILVKVEQGLGRMF---------DYLVAAIEK----------RKVE 220
Query: 264 --DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELA 321
DD + + + D + D + GYET++ L +Y+ A
Sbjct: 221 PGDDLTSDI----VRAF------HDGVLDDYELRTLVATVLVAGYETTNHQLALAMYDFA 270
Query: 322 RNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQ-LDRISVKKY 380
++PD K+++ + +E LR P+LP R++
Sbjct: 271 QHPDQWMKIKEN------------------PELAPQAVEEVLRWSPTLPVTATRVAA--- 309
Query: 381 KLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLP 435
D ++ GT + + H DP + D ++FD P +
Sbjct: 310 ----EDFEVNGVRIPTGTPVFMCAHVAHRDPRVFADADRFDITVKRE-----APS---IA 357
Query: 436 FGDGPRNCIG 445
FG GP C+G
Sbjct: 358 FGGGPHFCLG 367
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 55.8 bits (135), Expect = 1e-08
Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 51/197 (25%)
Query: 263 RDDFLNIMMQLQIAQRGKTLSP-DDV--------EMTDDVITAQSFVFFFGGYETSSSVL 313
+ L +L I R K P DD+ ++T D + GG ET+ +
Sbjct: 207 HTEILVYFDEL-ITARRK--EPGDDLVSTLVTDDDLTIDDVLLNCDNVLIGGNETTRHAI 263
Query: 314 TFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLD 373
T ++ LA P + + LR + +D V +E LR +
Sbjct: 264 TGAVHALATVPGLLTALRDG------------------SADVDTVVEEVLRWTSPAMHVL 305
Query: 374 RISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESR 428
R++ D+T++ GT + A + DP + DP+ F P R +
Sbjct: 306 RVTT-------ADVTINGRDLPSGTPVVAWLPAANRDPAEFDDPDTFLPGR------KPN 352
Query: 429 PHYTYLPFGDGPRNCIG 445
H + FG G +C+G
Sbjct: 353 RH---ITFGHGMHHCLG 366
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 53.7 bits (130), Expect = 5e-08
Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 41/163 (25%)
Query: 288 EMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYE 347
++D + G ET++++++ + + R ++R+E
Sbjct: 193 NLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNL-WQRIREE-------------- 237
Query: 348 ICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAI 402
+ K +EALR P + + R + + + L G + + +
Sbjct: 238 -----NLYLKAIEEALRYSPPVMRTVRKTKE-------RVKLGDQTIEEGEYVRVWIASA 285
Query: 403 HYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
+ D E + D EKF P+R PH L FG G C+G
Sbjct: 286 NRDEEVFHDGEKFIPDR------NPNPH---LSFGSGIHLCLG 319
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 53.4 bits (129), Expect = 6e-08
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 42/168 (25%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
E+T + + GG +++ + L P++ +LR E
Sbjct: 223 GRDEITLSEAVGLAVLLQIGGEAVTNN-SGQMFHLLLSRPELAERLRSE----------- 270
Query: 345 TYEICHKMSYLDKVTKEALRMYP--SLPQLDRISVKKYKLPNTDLTLD-----VGTKISI 397
+ E LR P + L RI++ D+ + G + +
Sbjct: 271 -------PEIRPRAIDELLRWIPHRNAVGLSRIAL-------EDVEIKGVRIRAGDAVYV 316
Query: 398 PTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
A + DPE +PDP++ D ER PH + FG GP C G
Sbjct: 317 SYLAANRDPEVFPDPDRIDFER------SPNPH---VSFGFGPHYCPG 355
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 52.2 bits (126), Expect = 1e-07
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 40/168 (23%)
Query: 285 DDVEMTDDVITAQSFVFFFGGYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGEL 344
+ +TD I + + G+ET+ S++ + L+ +P+ ++ +
Sbjct: 223 NGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSG----------- 271
Query: 345 TYEICHKMSYLDKVTKEALRMYPSLPQL-DRISVKKYKLPNTDLTLD-----VGTKISIP 398
+ V +E LR + R + D+ + G + +
Sbjct: 272 -------EAEWSAVVEETLRFSTPTSHVLIRFAA-------EDVPVGDRVIPAGDALIVS 317
Query: 399 TFAIHYDPE-YYPDPEKFDPERFSPENIESRPHYTYLPFGDGPRNCIG 445
A+ D + P ++FD R S H + FG GP C G
Sbjct: 318 YGALGRDERAHGPTADRFDLTRTSG-----NRH---ISFGHGPHVCPG 357
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 51.2 bits (123), Expect = 4e-07
Identities = 50/329 (15%), Positives = 101/329 (30%), Gaps = 77/329 (23%)
Query: 125 RLRNKLSPTFTSGKIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIG 184
RLR +S FT + + +++ + ++ G V+ I
Sbjct: 126 RLRKIISRGFTPRAVGRLHDELQERAQKIAAEAAAA-GS---GDF-VEQVSCELPLQAIA 180
Query: 185 TTAFGIEINSLENPDSEFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQF 244
G+ P + ++ + P +++ K + +
Sbjct: 181 G-LLGV-------PQEDRGKLFHWS---------NEMTGNEDPEYAHIDPKASSAELIGY 223
Query: 245 FSNLVKTNLSYREKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFG 304
+ + + KN DD + ++Q I D +++DD +
Sbjct: 224 AMKMAEE----KAKNP--ADDIVTQLIQADI---------DGEKLSDDEFGFFVVMLAVA 268
Query: 305 GYETSSSVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALR 364
G ET+ + +T + A +PD ++ T E +R
Sbjct: 269 GNETTRNSITQGMMAFAEHPDQWELYKKVRPET--------------------AADEIVR 308
Query: 365 MYPSLPQLDRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPER 419
+ R +++ D L G ++ + + ++D E + DP F+ R
Sbjct: 309 WATPVTAFQRTALR-------DYELSGVQIKKGQRVVMFYRSANFDEEVFQDPFTFNILR 361
Query: 420 FSPENIESRPHYTYLPFGDGPRNCIGKIL 448
PH + G G CIG L
Sbjct: 362 ------NPNPHVGF--GGTGAHYCIGANL 382
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 50.7 bits (122), Expect = 4e-07
Identities = 56/382 (14%), Positives = 123/382 (32%), Gaps = 104/382 (27%)
Query: 78 MVTDPELYKYILIKDFDHFVDRGMGELDAKRDPIAGHLFLSKGEYWKRLRNKLSPTFTSG 137
+VT + + IL D + F + +A R + G L RLR ++P +++
Sbjct: 43 LVTGHDEVRAIL-ADHERFSSMRPVDDEADRALLPGILQAYDPPDHTRLRRTVAPAYSAR 101
Query: 138 KIKYMFPLIKKCSDQLITTIRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEINSLEN 197
+++ + P I++ ++ + G + V+ + G+
Sbjct: 102 RMERLRPRIEEIVEECLDDFESV-GAP--VDF-VRHAAWPIPAYIACEF-LGV------- 149
Query: 198 PDS---EFRQVSLLVMKPSVLQMLKAVLSELIPLIKYLNLKIFDPRISQFFSNLVKTNLS 254
P E ++ + + + ++ + L
Sbjct: 150 PRDDQAELSRMIRESRESRLPRQRTLSGLGIV----------------NYTKRLTSG--- 190
Query: 255 YREKNNIKR----DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFGGYETSS 310
KR D + ++ + + G +S ++ + + E +
Sbjct: 191 -------KRRDPGDGMIGVI----VREHGAEISDEE-------LAGLAEGNLIMAAEQMA 232
Query: 311 SVLTFCLYELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLP 370
+ L + L +PD + LR++ +D T+E LR + S+
Sbjct: 233 AQLAVAVLLLVTHPDQMALLREK------------------PELIDSATEEVLR-HASIV 273
Query: 371 QL--DRISVKKYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPE 423
+ R+++ D+ + G ++ A + P ++FD R
Sbjct: 274 EAPAPRVAL-------ADVRMAGRDIHAGDVLTCSMLATNRAP-----GDRFDITR---- 317
Query: 424 NIESRPHYTYLPFGDGPRNCIG 445
E H + FG G +CIG
Sbjct: 318 --EKATH---MAFGHGIHHCIG 334
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 48.0 bits (115), Expect = 4e-06
Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 49/192 (25%)
Query: 265 DFLNIMMQLQIAQRGKTLSPD------DVEMTDDVITAQSFVFFFGGYETSSSVLTFCLY 318
+ ++ + + R D + +++ + G ET+++++ +
Sbjct: 166 ELISFSKKE-LDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIE 224
Query: 319 ELARNPDIQSKLRQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMYPSLPQLDRISVK 378
+ +R++ G L +EALR P + + R++ +
Sbjct: 225 DFTLYNSWD-YVREK--------GALK------------AVEEALRFSPPVMRTIRVTKE 263
Query: 379 KYKLPNTDLTLD-----VGTKISIPTFAIHYDPEYYPDPEKFDPERFSPENIESRPHYTY 433
+ + G + + + + D E + DP+ F P+R PH
Sbjct: 264 -------KVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDR------TPNPH--- 307
Query: 434 LPFGDGPRNCIG 445
L FG G C+G
Sbjct: 308 LSFGSGIHLCLG 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 6e-05
Identities = 58/335 (17%), Positives = 108/335 (32%), Gaps = 124/335 (37%)
Query: 83 ELYK-YILIKD-FD----HFVDR-GMGELDAKRD-PIAGHLFLSKGEYWKRLRNKLSPTF 134
+LYK +D ++ HF D G LD + P+ GE KR+R
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN-LTIHFGGEKGKRIREN----- 1687
Query: 135 TSGKIKYMFPLIKKCSDQLITT--IRKQIGESKQMSLEVKDYCARYTTDVIGTTAFGIEI 192
Y + + D + T I K+I E Y R ++ T
Sbjct: 1688 ------YSAMIFETIVDGKLKTEKIFKEINEH------STSYTFRSEKGLLSAT------ 1729
Query: 193 NSLENPDSEFRQVSLLVMKPSVLQMLKAVLSE-LIPLIKYL---NL----------KIFD 238
+F Q +L +M+ + + LK S+ LIP +L +
Sbjct: 1730 --------QFTQPALTLMEKAAFEDLK---SKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 239 PRISQFFSNLVKTNLSYR--------EKNNIKRDDFLNIMMQLQIAQRGKTLSPDDVEMT 290
+LV+ + YR ++ + R ++ M+ + + + S + ++
Sbjct: 1779 ------IESLVEV-VFYRGMTMQVAVPRDELGRSNYG--MIAINPGRVAASFSQEALQYV 1829
Query: 291 DDVITAQSFVFFFGGYETSSSVLTFCLYELARN---PDIQSKLRQEIMATKKKEGELTYE 347
+ + ++ G E+ N + +Q + A G+L
Sbjct: 1830 VERVGKRT-----GW---------LV--EIV-NYNVEN-----QQYVAA-----GDL--- 1859
Query: 348 ICHKMSYLDKVTKEALRMYPSLPQLDRISVKKYKL 382
LD VT L+ I ++K +
Sbjct: 1860 -----RALDTVTNV----------LNFIKLQKIDI 1879
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 32.8 bits (74), Expect = 0.24
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 222 LSELIPLIKYLNLKIFDPRISQFFSNLVKTNLSYREKNNIKRDDFLNIMMQ----LQIAQ 277
+ + I +K L+ DPR+ + L T + + + +D F + L A
Sbjct: 86 VHKFITALKSTGLRTSDPRLKECMDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAF 145
Query: 278 RGKTLSPDDVEMTDDV 293
R K + PD + T +
Sbjct: 146 RRKFVIPDFMSFTSHI 161
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 31.8 bits (71), Expect = 0.45
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 87 YILIKDFDHFVDRGMGELDAK----RDPIAGHLFLSKGEYWKRLRNKLSPTFTSGKIKYM 142
+ I +F HF DRG ++ K D +A L G W L N T Y
Sbjct: 8 FTQIDNFSHFYDRGDHLVNGKPSFTVDQVADQL-TRSGASWHDLNNDGVINLT-----YT 61
Query: 143 FP 144
F
Sbjct: 62 FL 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.95
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 19/44 (43%)
Query: 360 KEALRMYPSLPQLDRISVKKYKLPNTDLTLDVGTKISIPTFAIH 403
K+AL+ +L S+K Y + S P AI
Sbjct: 19 KQALK------KLQA-SLKLYA-DD-----------SAPALAIK 43
Score = 29.1 bits (64), Expect = 1.6
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 27/50 (54%)
Query: 331 RQEIMATKKKEGELTYEICHKMSYLDKVTKEALRMY-P-SLPQLDRISVK 378
+Q + KK + +L++Y S P L ++K
Sbjct: 19 KQAL---KKLQA-------------------SLKLYADDSAPAL---AIK 43
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 28.4 bits (64), Expect = 5.0
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 13/39 (33%)
Query: 395 IS----IPTF--AI-----HYDPEYYPDPEKF--DPERF 420
S IP+F + YDP Y F PE+
Sbjct: 56 TSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKI 94
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling,
SGC stockholm, structural genomics CONS hydrolase; 1.90A
{Homo sapiens}
Length = 357
Score = 27.6 bits (61), Expect = 8.0
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 249 VKTNLSYREKNNIKR-DDFLNIMMQLQIAQRGKTLSPDDVEMTDDVITAQSFVFFFG 304
+ ++ + + +R D+ + L + + +P D V T VF+FG
Sbjct: 148 ITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAAD-VTTRFDEVFWFG 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.396
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,002,175
Number of extensions: 432921
Number of successful extensions: 1205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 151
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)