Query psy2448
Match_columns 151
No_of_seqs 67 out of 69
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 16:33:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166|consensus 96.0 0.035 7.5E-07 51.8 8.5 108 4-117 378-488 (514)
2 cd00020 ARM Armadillo/beta-cat 88.9 4.1 8.8E-05 27.2 7.5 61 21-81 49-109 (120)
3 cd00020 ARM Armadillo/beta-cat 83.9 6.2 0.00013 26.3 6.2 92 22-113 8-103 (120)
4 KOG4025|consensus 81.7 2.3 4.9E-05 35.9 4.1 74 3-115 95-182 (207)
5 PF14726 RTTN_N: Rotatin, an a 77.5 9 0.0002 28.5 5.8 77 9-86 4-94 (98)
6 KOG1710|consensus 66.1 5.2 0.00011 36.5 2.7 34 80-113 125-166 (396)
7 PF06840 DUF1241: Protein of u 60.9 7.1 0.00015 31.6 2.3 62 4-108 92-153 (154)
8 TIGR03738 PRTRC_C PRTRC system 55.6 2.2 4.8E-05 30.4 -1.2 23 89-111 23-45 (66)
9 PF08280 HTH_Mga: M protein tr 50.2 11 0.00024 24.7 1.5 20 76-95 33-52 (59)
10 PF14454 Prok_Ub: Prokaryotic 49.7 3.7 8E-05 28.9 -0.9 24 88-111 23-46 (65)
11 PF00514 Arm: Armadillo/beta-c 49.3 30 0.00064 20.5 3.2 30 52-81 1-30 (41)
12 PF06039 Mqo: Malate:quinone o 44.7 9.5 0.00021 36.0 0.7 71 24-95 339-451 (488)
13 KOG3463|consensus 43.2 9.3 0.0002 29.7 0.4 36 25-60 19-60 (109)
14 PF14388 DUF4419: Domain of un 41.8 13 0.00028 32.2 1.1 73 32-104 20-104 (299)
15 KOG4224|consensus 41.2 31 0.00066 32.8 3.4 67 16-83 159-228 (550)
16 COG0796 MurI Glutamate racemas 38.9 10 0.00022 33.0 0.0 33 19-51 184-222 (269)
17 COG2461 Uncharacterized conser 35.8 17 0.00037 33.7 1.0 22 80-101 289-318 (409)
18 PF08388 GIIM: Group II intron 34.7 41 0.00088 22.4 2.4 47 66-113 6-54 (80)
19 PF11342 DUF3144: Protein of u 34.3 11 0.00023 27.4 -0.5 40 58-113 38-77 (78)
20 PF07981 Plasmod_MYXSPDY: Plas 33.4 19 0.00041 19.8 0.5 10 97-106 2-11 (17)
21 smart00224 GGL G protein gamma 31.1 27 0.0006 23.7 1.1 29 7-35 19-48 (63)
22 COG5064 SRP1 Karyopherin (impo 30.5 1.5E+02 0.0033 28.1 6.1 110 1-124 378-515 (526)
23 PF14969 DUF4508: Domain of un 30.2 24 0.00051 26.9 0.7 37 89-125 22-59 (98)
24 PF10158 LOH1CR12: Tumour supp 30.1 34 0.00073 26.7 1.6 56 38-93 58-120 (131)
25 PF13316 DUF4087: Protein of u 29.3 24 0.00051 27.0 0.6 17 126-142 14-30 (101)
26 KOG2757|consensus 28.7 1.6E+02 0.0035 27.6 5.9 84 11-95 144-240 (411)
27 PF03224 V-ATPase_H_N: V-ATPas 28.7 1.3E+02 0.0028 25.2 4.9 70 18-87 236-309 (312)
28 KOG2160|consensus 28.2 1.4E+02 0.0029 27.2 5.2 111 2-112 93-220 (342)
29 COG0039 Mdh Malate/lactate deh 27.6 66 0.0014 28.5 3.2 50 1-52 85-137 (313)
30 smart00185 ARM Armadillo/beta- 27.5 81 0.0018 17.6 2.6 27 53-79 2-28 (41)
31 PF08158 NUC130_3NT: NUC130/3N 26.2 12 0.00026 25.1 -1.3 29 84-117 3-31 (52)
32 PLN00135 malate dehydrogenase 25.6 76 0.0016 27.5 3.1 51 1-51 74-127 (309)
33 TIGR03714 secA2 accessory Sec 25.5 90 0.002 31.0 3.9 103 1-111 26-128 (762)
34 KOG2759|consensus 25.2 1.1E+02 0.0024 28.9 4.2 70 18-87 238-316 (442)
35 PF02268 TFIIA_gamma_N: Transc 25.0 59 0.0013 21.8 1.9 26 24-49 17-44 (49)
36 TIGR01758 MDH_euk_cyt malate d 24.7 84 0.0018 27.2 3.2 50 2-51 92-144 (324)
37 PF11291 DUF3091: Protein of u 24.0 33 0.00071 26.0 0.6 38 90-128 4-50 (100)
38 smart00872 Alpha-mann_mid Alph 23.9 1.7E+02 0.0036 19.9 4.1 50 4-53 10-62 (79)
39 PRK05686 fliG flagellar motor 23.9 1.2E+02 0.0026 26.3 4.0 25 93-117 209-233 (339)
40 cd05295 MDH_like Malate dehydr 23.6 65 0.0014 29.9 2.5 60 1-65 215-278 (452)
41 PF02985 HEAT: HEAT repeat; I 22.1 1.2E+02 0.0026 17.2 2.6 19 2-20 12-31 (31)
42 PF12295 Symplekin_C: Sympleki 21.7 1.2E+02 0.0025 24.5 3.3 82 29-113 24-105 (183)
43 PF09385 HisK_N: Histidine kin 21.4 28 0.00061 27.7 -0.2 34 58-92 83-122 (133)
44 PF00056 Ldh_1_N: lactate/mala 21.4 1.3E+02 0.0028 22.6 3.4 49 2-51 86-137 (141)
45 KOG1684|consensus 21.3 2.1E+02 0.0044 26.8 5.1 16 76-91 259-274 (401)
46 PF09724 DUF2036: Uncharacteri 21.1 5.2E+02 0.011 21.9 7.3 89 3-92 162-263 (325)
47 PF10165 Ric8: Guanine nucleot 21.0 1.4E+02 0.0031 27.0 4.0 39 33-71 44-82 (446)
48 PF03224 V-ATPase_H_N: V-ATPas 20.9 83 0.0018 26.4 2.4 39 33-72 162-200 (312)
49 TIGR02492 flgK_ends flagellar 20.8 2.2E+02 0.0048 24.4 5.0 83 17-99 84-187 (322)
50 PF10457 MENTAL: Cholesterol-c 20.6 46 0.00099 27.4 0.8 44 47-104 128-171 (171)
51 CHL00159 rpl13 ribosomal prote 20.6 95 0.0021 24.7 2.6 32 25-59 89-120 (143)
52 KOG1293|consensus 20.2 1.8E+02 0.0039 28.9 4.8 75 5-79 400-477 (678)
No 1
>KOG0166|consensus
Probab=96.02 E-value=0.035 Score=51.83 Aligned_cols=108 Identities=10% Similarity=0.031 Sum_probs=92.4
Q ss_pred HHHHHHH-HHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCC-chHHH
Q psy2448 4 QELKSRN-SGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAG-SELCE 81 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~g-s~L~E 81 (151)
.|+|+.+ -|+.+..+.++ +..-..|.+-. |+|+....+ .+..++. .+..+.+.+.+.++.|...+++ ..+.+
T Consensus 378 f~~rKEAawaIsN~ts~g~--~~qi~yLv~~g--iI~plcdlL-~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~ 451 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTSSGT--PEQIKYLVEQG--IIKPLCDLL-TCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAI 451 (514)
T ss_pred hHHHHHHHHHHHhhcccCC--HHHHHHHHHcC--Cchhhhhcc-cCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 4677777 88888888888 55666666555 888888888 7777777 8999999999999999988876 89999
Q ss_pred HHHHhhcCChhhhhhccCC-CccHHHHHHHhhcCCCC
Q psy2448 82 AVTMINSYFPEDIVRYYSP-RCTDHLLAKVDQFTPQV 117 (151)
Q Consensus 82 ~I~~IN~cfPeEIV~YYSP-gY~e~LL~kld~y~p~~ 117 (151)
+|+.++++...|..+++.. ++.+...+-||.|-+.-
T Consensus 452 ~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 452 MIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999 99999999999997764
No 2
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.93 E-value=4.1 Score=27.21 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=48.6
Q ss_pred cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHH
Q psy2448 21 VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCE 81 (151)
Q Consensus 21 t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E 81 (151)
.-++.|-.+|.+.-+.+.++++.=++.+.-+.+..+..++..|.+..+-++-.+.....++
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~ 109 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQK 109 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHH
Confidence 4567777788877789999999999999888889999999999999998885554444444
No 3
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.85 E-value=6.2 Score=26.31 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=65.7
Q ss_pred ccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHH----HHHhhcCChhhhhhc
Q psy2448 22 SFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEA----VTMINSYFPEDIVRY 97 (151)
Q Consensus 22 ~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~----I~~IN~cfPeEIV~Y 97 (151)
-++.|-.+|.+.-+.+....+.-++++--+++..++.|+..|++..+-++=......+++. +..|=.-.|+-...+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3455666666655788888888899988888999999999999999999855556666552 333333344444455
Q ss_pred cCCCccHHHHHHHhhc
Q psy2448 98 YSPRCTDHLLAKVDQF 113 (151)
Q Consensus 98 YSPgY~e~LL~kld~y 113 (151)
...|.-+.|++-++..
T Consensus 88 ~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 88 LEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHCCChHHHHHHHhcC
Confidence 6677888888887765
No 4
>KOG4025|consensus
Probab=81.68 E-value=2.3 Score=35.94 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHH
Q psy2448 3 PQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEA 82 (151)
Q Consensus 3 ~~DLk~K~rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~ 82 (151)
-|||-.|++|||.|+.+. |..-..|..|. +.|.+| .|.+++.
T Consensus 95 fqeLn~ka~aLk~iLSri-----------------------------PdEinDR~~FL-----eTIK~I----ASaIKkL 136 (207)
T KOG4025|consen 95 FQELNKKAIALKRILSRI-----------------------------PDEINDRHAFL-----ETIKLI----ASAIKKL 136 (207)
T ss_pred HHHHHHHHHHHHHHHHhC-----------------------------cHhhhhHHHHH-----HHHHHH----HHHHHHH
Confidence 478989999999998764 44556678884 344444 4678888
Q ss_pred HHHhhcCCh--------------hhhhhccCCCccHHHHHHHhhcCC
Q psy2448 83 VTMINSYFP--------------EDIVRYYSPRCTDHLLAKVDQFTP 115 (151)
Q Consensus 83 I~~IN~cfP--------------eEIV~YYSPgY~e~LL~kld~y~p 115 (151)
.+.||+.|- .|.|+ ||..||.+|-.-..+=++
T Consensus 137 Ld~vN~v~~~~p~t~~~AvE~rKkEFVk-YSK~FS~TLKtYFKdGk~ 182 (207)
T KOG4025|consen 137 LDAVNAVYRIVPLTAQPAVEKRKKEFVK-YSKRFSNTLKTYFKDGKK 182 (207)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCc
Confidence 888888874 24444 688888887665554344
No 5
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=77.49 E-value=9 Score=28.53 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcccc-----------chhhhhhc---cCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCC
Q psy2448 9 RNSGLQISFLSNVSF-----------SFVDLLLY---ESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPP 74 (151)
Q Consensus 9 K~rALK~IiqKct~l-----------~ALEpLL~---~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e 74 (151)
++|||++|.-|+.|= .-|.-||. -.|..--.-||.=+.+ |-+.+.|-+.++.=|+...+.+++..
T Consensus 4 R~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~-L~~~~~a~~~l~~iG~~~fL~klr~~ 82 (98)
T PF14726_consen 4 RVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLR-LLKSPYAAQILRDIGAVRFLSKLRPN 82 (98)
T ss_pred HHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHH-HHhCcHHHHHHHHccHHHHHHHHHhc
Confidence 458999999887652 11222222 1222233445555556 55667788899999999999999999
Q ss_pred CCchHHHHHHHh
Q psy2448 75 AGSELCEAVTMI 86 (151)
Q Consensus 75 ~gs~L~E~I~~I 86 (151)
.++.++..|+.|
T Consensus 83 ~~~~~~~~id~i 94 (98)
T PF14726_consen 83 VEPNLQAEIDEI 94 (98)
T ss_pred CCHHHHHHHHHH
Confidence 999999988865
No 6
>KOG1710|consensus
Probab=66.11 E-value=5.2 Score=36.53 Aligned_cols=34 Identities=26% Similarity=0.529 Sum_probs=29.3
Q ss_pred HHHHHHhhcCChhhhhhccC--------CCccHHHHHHHhhc
Q psy2448 80 CEAVTMINSYFPEDIVRYYS--------PRCTDHLLAKVDQF 113 (151)
Q Consensus 80 ~E~I~~IN~cfPeEIV~YYS--------PgY~e~LL~kld~y 113 (151)
.+.+..||+.||-|...||+ |.|++.|+.-+-.+
T Consensus 125 H~CV~iINN~~t~~~leyyt~p~g~~~ep~~Pp~La~~~H~~ 166 (396)
T KOG1710|consen 125 HECVAIINNHITIDVLEYYTRPKGYEGEPEYPPELAVFIHSL 166 (396)
T ss_pred hHHHHHHhccccHHHHHHhccccccCCCCCCCHHHHHHHHHH
Confidence 46889999999999999997 78888888877654
No 7
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=60.89 E-value=7.1 Score=31.57 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHHH
Q psy2448 4 QELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAV 83 (151)
Q Consensus 4 ~DLk~K~rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~I 83 (151)
++|-+|.+|||.|+.+. |..-.-|+.|. .-|.+| .+.+++..
T Consensus 92 ~el~~~A~~LK~iLSrI-----------------------------Pdei~dR~~FL-----~tIK~I----AsaIK~lL 133 (154)
T PF06840_consen 92 QELNKRATALKRILSRI-----------------------------PDEISDRRTFL-----ETIKEI----ASAIKKLL 133 (154)
T ss_dssp HHHHHHHHHHHHHHHTH-----------------------------HHHTTSHHHHH-----HHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-----------------------------cHhhcchHHHH-----HHHHHH----HHHHHHHH
Confidence 45666777777777653 45556788884 445555 45899999
Q ss_pred HHhhcCChhhhhhccCCCccHHHHH
Q psy2448 84 TMINSYFPEDIVRYYSPRCTDHLLA 108 (151)
Q Consensus 84 ~~IN~cfPeEIV~YYSPgY~e~LL~ 108 (151)
|++|.+|. ||.++.....||
T Consensus 134 dAvn~v~~-----~~~~~~~k~ale 153 (154)
T PF06840_consen 134 DAVNEVFK-----NIPGPTQKQALE 153 (154)
T ss_dssp HHHHHHHT-----TST-TSSCHHHH
T ss_pred HHHHHHHH-----hccchhhhhhhc
Confidence 99997654 555444444443
No 8
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=55.56 E-value=2.2 Score=30.44 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=19.1
Q ss_pred CChhhhhhccCCCccHHHHHHHh
Q psy2448 89 YFPEDIVRYYSPRCTDHLLAKVD 111 (151)
Q Consensus 89 cfPeEIV~YYSPgY~e~LL~kld 111 (151)
.=||++..|||..|+|-....|+
T Consensus 23 ~spe~V~dfYs~~YPeLttA~v~ 45 (66)
T TIGR03738 23 MSPEQVRDFYSAQYPELLNAEVE 45 (66)
T ss_pred CCHHHHHHHHhccCchheeeeee
Confidence 45899999999999997766655
No 9
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=50.25 E-value=11 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=14.9
Q ss_pred CchHHHHHHHhhcCChhhhh
Q psy2448 76 GSELCEAVTMINSYFPEDIV 95 (151)
Q Consensus 76 gs~L~E~I~~IN~cfPeEIV 95 (151)
...++.+|+.||..||+.+.
T Consensus 33 ~rti~~~i~~L~~~f~~~~~ 52 (59)
T PF08280_consen 33 ERTIKNDINELNEFFPENIS 52 (59)
T ss_dssp HHHHHHHHHHHHTT--TCCC
T ss_pred HHHHHHHHHHHHHHhhhhce
Confidence 34689999999999999864
No 10
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=49.68 E-value=3.7 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=19.8
Q ss_pred cCChhhhhhccCCCccHHHHHHHh
Q psy2448 88 SYFPEDIVRYYSPRCTDHLLAKVD 111 (151)
Q Consensus 88 ~cfPeEIV~YYSPgY~e~LL~kld 111 (151)
+.=|||+.+|||..|+|-.-.+|+
T Consensus 23 ~~spe~V~~~ya~~YPeL~tA~v~ 46 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQYPELTTAEVE 46 (65)
T ss_pred CCCHHHHHHHHhhhChhhheeeec
Confidence 345899999999999998776665
No 11
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=49.31 E-value=30 Score=20.52 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=23.2
Q ss_pred ChHHhHHHHhhhhhHHHHhcCCCCCchHHH
Q psy2448 52 DLKARRVFVSAGGLKRVQALKPPAGSELCE 81 (151)
Q Consensus 52 D~kaRr~FVtSGGLkklQei~~e~gs~L~E 81 (151)
|++.|+.++.+||+..|=++=......+++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~ 30 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQE 30 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHH
Confidence 577899999999999988875555555544
No 12
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=44.65 E-value=9.5 Score=35.96 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=46.3
Q ss_pred chhhhhhccC--ChhhHHHHHHHHHhhcCCChHHhHHHH----------hhhhhHHHHhcCCCCC--------ch-----
Q psy2448 24 SFVDLLLYES--PPEILLPALKQLCKIFPVDLKARRVFV----------SAGGLKRVQALKPPAG--------SE----- 78 (151)
Q Consensus 24 ~ALEpLL~~a--P~~ILKyVl~QfsKvLP~D~kaRr~FV----------tSGGLkklQei~~e~g--------s~----- 78 (151)
.-+-|++... =..+.||++.|+-.=--.-.++=|.|+ .-|| +|+|-|+..+. ++
T Consensus 339 ~N~~~ml~~~~~n~~L~kYLi~q~~~s~~~r~~~Lr~f~P~a~~~DW~l~~AG-qRvQiIkk~~~kgG~L~fGTevI~s~ 417 (488)
T PF06039_consen 339 DNLFPMLAVGLDNFDLTKYLIGQVLQSKEDRMEALRKFYPSAKPEDWELITAG-QRVQIIKKDEKKGGVLQFGTEVITSA 417 (488)
T ss_pred ccHHHHHHHHhhhhhHHHHHHHhhccCHHHHHHHHHHhCccCChhceEEEecC-ceeeEEecCCCCCcEEecCceEEecC
Confidence 3455677654 447899999998543222233345555 2255 89999976532 11
Q ss_pred -----------------HHHHHHHhhcCChhhhh
Q psy2448 79 -----------------LCEAVTMINSYFPEDIV 95 (151)
Q Consensus 79 -----------------L~E~I~~IN~cfPeEIV 95 (151)
..-.|+.+..|||+++-
T Consensus 418 dGsiaaLLGASPGASTav~iMl~vl~~cF~~~~~ 451 (488)
T PF06039_consen 418 DGSIAALLGASPGASTAVSIMLDVLERCFPERMA 451 (488)
T ss_pred CCceEeeccCCCChhhhHHHHHHHHHHHhHHHHH
Confidence 55688999999999886
No 13
>KOG3463|consensus
Probab=43.16 E-value=9.3 Score=29.71 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=28.1
Q ss_pred hhhhhhccC--ChhhHHHHHHHHHh----hcCCChHHhHHHH
Q psy2448 25 FVDLLLYES--PPEILLPALKQLCK----IFPVDLKARRVFV 60 (151)
Q Consensus 25 ALEpLL~~a--P~~ILKyVl~QfsK----vLP~D~kaRr~FV 60 (151)
+|+-+++.- +|++.++||.||-| .|++.++.|-.|=
T Consensus 19 tLDe~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~kmsfk 60 (109)
T KOG3463|consen 19 TLDELVSDGVITPSLAKKVLEQFDKSINEALNDKVKNKMSFK 60 (109)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 577788765 99999999999977 5666777666664
No 14
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=41.78 E-value=13 Score=32.21 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred cCChhhHHHHHHHHHhh-cCCChHHhHHHHhhhhhHHHHhc----CC------CCCchHHHHHHHhhcCC-hhhhhhccC
Q psy2448 32 ESPPEILLPALKQLCKI-FPVDLKARRVFVSAGGLKRVQAL----KP------PAGSELCEAVTMINSYF-PEDIVRYYS 99 (151)
Q Consensus 32 ~aP~~ILKyVl~QfsKv-LP~D~kaRr~FVtSGGLkklQei----~~------e~gs~L~E~I~~IN~cf-PeEIV~YYS 99 (151)
=+|..|.=-+|.||+.- -.|.-+-|..||.--|=|.|.-. .. .-+.-..+..+.|++-- .+++...-.
T Consensus 20 lrPDdVW~aIl~qfs~~vn~naE~lR~~FV~hegkk~L~V~~~~~~~~~~~~~~~~~~~~~~~~~I~~~i~d~~l~dwi~ 99 (299)
T PF14388_consen 20 LRPDDVWLAILTQFSFYVNANAEELRSLFVDHEGKKELVVERDDFTNGSLDNVDWDELIKEFTEEIQKNIKDPSLRDWIM 99 (299)
T ss_pred eCHHHHHHHHHHHHHHHHHhCHHHHhhhhcCCCCCeEEEEEEecccCCCcccCCHHHHHHHHHHHHHHhcCCHHHHhhhc
Confidence 36999999999999995 45556778899998885555443 11 12223556666676554 445899999
Q ss_pred CCccH
Q psy2448 100 PRCTD 104 (151)
Q Consensus 100 PgY~e 104 (151)
|+||-
T Consensus 100 p~FST 104 (299)
T PF14388_consen 100 PDFST 104 (299)
T ss_pred CCCCC
Confidence 99984
No 15
>KOG4224|consensus
Probab=41.21 E-value=31 Score=32.77 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=51.3
Q ss_pred HHHhccccchhhhhhccC---ChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHHH
Q psy2448 16 SFLSNVSFSFVDLLLYES---PPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAV 83 (151)
Q Consensus 16 IiqKct~l~ALEpLL~~a---P~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~I 83 (151)
+=-|..+..||+||..-+ --.+..|..+-+..+ .|.-+.||..|.+||++.+-++-..-+...++|-
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnm-Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyyc 228 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNM-THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYC 228 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHh-hhhhhhhhhhhccCCchhhhhhhccCChhHHHHH
Confidence 334667889999998855 235677777777765 7899999999999999999998666566666653
No 16
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=38.90 E-value=10 Score=33.01 Aligned_cols=33 Identities=3% Similarity=0.147 Sum_probs=22.2
Q ss_pred hccccchhhhhhccC-Chhh-----HHHHHHHHHhhcCC
Q psy2448 19 SNVSFSFVDLLLYES-PPEI-----LLPALKQLCKIFPV 51 (151)
Q Consensus 19 Kct~l~ALEpLL~~a-P~~I-----LKyVl~QfsKvLP~ 51 (151)
-|||.|-|.+++++. |+.+ -.++..+.+.+|..
T Consensus 184 GCTHyPll~~~i~~~~~~~v~lids~~~~a~~~~~~L~~ 222 (269)
T COG0796 184 GCTHYPLLKPEIQQVLGEHVALIDSGAETARRLARLLSP 222 (269)
T ss_pred eCcCcHHHHHHHHHHhCCCceEeCCHHHHHHHHHHHhCh
Confidence 499999999998864 5432 23566666665544
No 17
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=35.84 E-value=17 Score=33.68 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCh--------hhhhhccCCC
Q psy2448 80 CEAVTMINSYFP--------EDIVRYYSPR 101 (151)
Q Consensus 80 ~E~I~~IN~cfP--------eEIV~YYSPg 101 (151)
.+-+++|=+.+| +|||+|||||
T Consensus 289 ~~e~naif~~lP~Ditfvdk~diV~ffs~~ 318 (409)
T COG2461 289 LEELNAIFKHLPVDITFVDKNDIVRFFSGG 318 (409)
T ss_pred HHHHHHHHhhCCCceEEecccceEEecCCc
Confidence 566777777789 7899999999
No 18
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=34.71 E-value=41 Score=22.36 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=34.4
Q ss_pred HHHHhcC--CCCCchHHHHHHHhhcCChhhhhhccCCCccHHHHHHHhhc
Q psy2448 66 KRVQALK--PPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQF 113 (151)
Q Consensus 66 kklQei~--~e~gs~L~E~I~~IN~cfPeEIV~YYSPgY~e~LL~kld~y 113 (151)
++|-++- ..-+..+.+.|+.||..- ---.+||..+.+...+.+||.+
T Consensus 6 ~kik~~~~~~~~~~~~~~~i~~LN~~l-rGW~nYy~~~~~~~~f~~ld~~ 54 (80)
T PF08388_consen 6 RKIKEITRRRNRGKSLEELIKKLNPIL-RGWANYYRIGNSSKTFSKLDHY 54 (80)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHH
Confidence 3455554 235678999999999632 2234899999999999999866
No 19
>PF11342 DUF3144: Protein of unknown function (DUF3144); InterPro: IPR021490 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=34.34 E-value=11 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=29.9
Q ss_pred HHHhhhhhHHHHhcCCCCCchHHHHHHHhhcCChhhhhhccCCCccHHHHHHHhhc
Q psy2448 58 VFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQF 113 (151)
Q Consensus 58 ~FVtSGGLkklQei~~e~gs~L~E~I~~IN~cfPeEIV~YYSPgY~e~LL~kld~y 113 (151)
.||.+.+...-.++.++ =+++|.||+-.|-+.|-+-+|+|
T Consensus 38 Af~~a~~~~~~~~~~~~----------------ke~~i~~f~~qy~~mL~~nlddy 77 (78)
T PF11342_consen 38 AFVAASSFESKADMAAE----------------KEEAIDYFTEQYRKMLEENLDDY 77 (78)
T ss_pred HHHHHHccCcHHHHHHh----------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 57777666544444333 26789999999999999999987
No 20
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=33.42 E-value=19 Score=19.85 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=7.3
Q ss_pred ccCCCccHHH
Q psy2448 97 YYSPRCTDHL 106 (151)
Q Consensus 97 YYSPgY~e~L 106 (151)
|.||+|+=.|
T Consensus 2 Y~SPdytL~~ 11 (17)
T PF07981_consen 2 YFSPDYTLRL 11 (17)
T ss_pred ccCCCceEEE
Confidence 7899987443
No 21
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=31.13 E-value=27 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHH-HHHHHHHHhccccchhhhhhccCCh
Q psy2448 7 KSRN-SGLQISFLSNVSFSFVDLLLYESPP 35 (151)
Q Consensus 7 k~K~-rALK~IiqKct~l~ALEpLL~~aP~ 35 (151)
|.|+ .|...|++=|+.-...+|||...|+
T Consensus 19 RikvS~a~~~li~y~e~~~~~DP~l~g~~~ 48 (63)
T smart00224 19 RIKVSKAAEELLAYCEQHAEEDPLLTGPPP 48 (63)
T ss_pred eehHHHHHHHHHHHHHcCCCCCCCcCCCCC
Confidence 4577 8999999999998899999987543
No 22
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=30.46 E-value=1.5e+02 Score=28.07 Aligned_cols=110 Identities=18% Similarity=0.283 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHHHH---hcc-------------ccchhhhhhccCChhhHHHHHHHHHhhc----------CCChH
Q psy2448 1 MPPQELKSRNSGLQISFL---SNV-------------SFSFVDLLLYESPPEILLPALKQLCKIF----------PVDLK 54 (151)
Q Consensus 1 ~~~~DLk~K~rALK~Iiq---Kct-------------~l~ALEpLL~~aP~~ILKyVl~QfsKvL----------P~D~k 54 (151)
|.+-|+|.|..|-=.|.+ .|. .+.+|..||.-++.+|..-.|--|..+| +++..
T Consensus 378 ls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin 457 (526)
T COG5064 378 LSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNIN 457 (526)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCcc
Confidence 346678877754433332 222 3567788888889888887777777766 45555
Q ss_pred HhHHHHh-hhhhHHHHhcCCCCCchHHH-HHHHhhcCChhhhhhccCCCccHHHHHHHhhcCCCCCCCcccc
Q psy2448 55 ARRVFVS-AGGLKRVQALKPPAGSELCE-AVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITC 124 (151)
Q Consensus 55 aRr~FVt-SGGLkklQei~~e~gs~L~E-~I~~IN~cfPeEIV~YYSPgY~e~LL~kld~y~p~~~~~~~~~ 124 (151)
--..||- -||..++-.++...+.++.+ .-..| +.||+- . +.+|+..|...+-.||-
T Consensus 458 ~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsII--------e~fFge----e--D~vd~lapet~g~tftf 515 (526)
T COG5064 458 IYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSII--------EKFFGE----E--DAVDELAPETAGNTFTF 515 (526)
T ss_pred HHHHHHHhcccHHHHHHhhhccccHHHHHHHHHH--------HHHccc----c--hhhhhcCccccCCeeec
Confidence 5567887 89999999998887777765 33444 444432 1 56788888887777764
No 23
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=30.19 E-value=24 Score=26.90 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=30.5
Q ss_pred CChhhhhhccCCCccHHHHHHHhhcCCCCC-CCccccC
Q psy2448 89 YFPEDIVRYYSPRCTDHLLAKVDQFTPQVS-LPLITCA 125 (151)
Q Consensus 89 cfPeEIV~YYSPgY~e~LL~kld~y~p~~~-~~~~~~~ 125 (151)
.|=++.|.|-.||..+.|+.-+++-+.+-. |.+|.|+
T Consensus 22 ~Fl~~Lv~ka~p~~v~~Ll~~l~~l~v~dkppsiFqCq 59 (98)
T PF14969_consen 22 DFLQDLVEKAVPGKVNGLLDSLENLSVQDKPPSIFQCQ 59 (98)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCcCCCCCCcHHHHh
Confidence 455678888999999999999998877543 8899996
No 24
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=30.08 E-value=34 Score=26.66 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCChHHhHHHHh-hhhhHHHHhcCCCCC---c---hHHHHHHHhhcCChhh
Q psy2448 38 LLPALKQLCKIFPVDLKARRVFVS-AGGLKRVQALKPPAG---S---ELCEAVTMINSYFPED 93 (151)
Q Consensus 38 LKyVl~QfsKvLP~D~kaRr~FVt-SGGLkklQei~~e~g---s---~L~E~I~~IN~cfPeE 93 (151)
.|-|=..+++++..=.+.++.|.. .++|++|++|..... + .+-+.|+.+|+.-|||
T Consensus 58 iKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~LP~~ 120 (131)
T PF10158_consen 58 IKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEILPEE 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh
Confidence 566666677777666666666664 468888888765522 1 2455888999999987
No 25
>PF13316 DUF4087: Protein of unknown function (DUF4087)
Probab=29.29 E-value=24 Score=27.02 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=15.5
Q ss_pred CCCCCCCCCCccCCCCC
Q psy2448 126 PDTPSDMSLGDEEGNWS 142 (151)
Q Consensus 126 ~~~~~~~~~~~~~~~~~ 142 (151)
.|||..++|-|.+|+|.
T Consensus 14 NPtPgN~~L~Drdg~W~ 30 (101)
T PF13316_consen 14 NPTPGNWWLTDRDGSWT 30 (101)
T ss_pred CCCCCccEEECCCCCEE
Confidence 58999999999999995
No 26
>KOG2757|consensus
Probab=28.72 E-value=1.6e+02 Score=27.56 Aligned_cols=84 Identities=15% Similarity=-0.002 Sum_probs=54.2
Q ss_pred HHHHHHHHhccccchhhhhhcc-C---------C--hhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc-CCCCCc
Q psy2448 11 SGLQISFLSNVSFSFVDLLLYE-S---------P--PEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL-KPPAGS 77 (151)
Q Consensus 11 rALK~IiqKct~l~ALEpLL~~-a---------P--~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei-~~e~gs 77 (151)
|-++.|.|-+..+|.|+-|+-+ + + +.+-|+|=.=|+.+ .+-.+-+-.-+.+-=.+|+|.= +.-..+
T Consensus 144 rp~~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~l-M~~~~~~i~~~v~~L~~r~~~~~~~~~~~ 222 (411)
T KOG2757|consen 144 RPLEEIKQFLDTIPELRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRL-MKAEENVIKIQVSKLVKRLQNELNGFNLT 222 (411)
T ss_pred cCHHHHHHHHHhChHHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHhccccccCcc
Confidence 6778888888888888877753 1 1 12333333334444 3444444555555556666654 333668
Q ss_pred hHHHHHHHhhcCChhhhh
Q psy2448 78 ELCEAVTMINSYFPEDIV 95 (151)
Q Consensus 78 ~L~E~I~~IN~cfPeEIV 95 (151)
.+.|.|-..|.-||.||=
T Consensus 223 d~~eli~~l~kqfP~DIG 240 (411)
T KOG2757|consen 223 DLEELILKLNKQFPGDIG 240 (411)
T ss_pred cHHHHHHHHHhhCCCcce
Confidence 899999999999999984
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.65 E-value=1.3e+02 Score=25.23 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=55.0
Q ss_pred HhccccchhhhhhccC-ChhhHHHHHHHHHhhcCCChH-HhHHHHhhhhhHHHHhcCCC--CCchHHHHHHHhh
Q psy2448 18 LSNVSFSFVDLLLYES-PPEILLPALKQLCKIFPVDLK-ARRVFVSAGGLKRVQALKPP--AGSELCEAVTMIN 87 (151)
Q Consensus 18 qKct~l~ALEpLL~~a-P~~ILKyVl~QfsKvLP~D~k-aRr~FVtSGGLkklQei~~e--~gs~L~E~I~~IN 87 (151)
.++.-++.|=-++..+ =++|.+-++.=|-.++.++.+ .-...|.+|+++-+|.++.. .+..|.|.|+.+.
T Consensus 236 ~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 236 NKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4444677777777877 559999999999999999987 77788999999999999665 7777888777654
No 28
>KOG2160|consensus
Probab=28.15 E-value=1.4e+02 Score=27.19 Aligned_cols=111 Identities=11% Similarity=0.051 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHHHHhcccc---------chhhhhh---ccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHH
Q psy2448 2 PPQELKSRNSGLQISFLSNVSF---------SFVDLLL---YESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQ 69 (151)
Q Consensus 2 ~~~DLk~K~rALK~IiqKct~l---------~ALEpLL---~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQ 69 (151)
++.|+..|-.||-.+-.-|.++ .-|.||+ +..+..+=.+...=++..+-++|+..-.+.-.|||.+|=
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4678888888888887665544 3455554 455888888888899999999999999999999999998
Q ss_pred hcCC--CCCchHHH---HHHHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448 70 ALKP--PAGSELCE---AVTMINSYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 70 ei~~--e~gs~L~E---~I~~IN~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
.+-. .+.+.-.. .|.+.=.-||.-+-+|..-+.-..|.+-+..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc
Confidence 8833 23322122 2222222355555566555444555554443
No 29
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=27.60 E-value=66 Score=28.46 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=41.2
Q ss_pred CChHHHHHHH-HHHHHHHHhccccchhhhhhccC--ChhhHHHHHHHHHhhcCCC
Q psy2448 1 MPPQELKSRN-SGLQISFLSNVSFSFVDLLLYES--PPEILLPALKQLCKIFPVD 52 (151)
Q Consensus 1 ~~~~DLk~K~-rALK~IiqKct~l~ALEpLL~~a--P~~ILKyVl~QfsKvLP~D 52 (151)
|+..||-.++ +-+|.|..+...... +..+--+ |-+++-|+..+++.. |+.
T Consensus 85 mtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD~~ty~~~k~sg~-p~~ 137 (313)
T COG0039 85 MTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVDILTYIAMKFSGF-PKN 137 (313)
T ss_pred CCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHHHHHHHHHHhcCC-Ccc
Confidence 6788999999 999999988877766 7665543 999999999999998 443
No 30
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.51 E-value=81 Score=17.60 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=18.4
Q ss_pred hHHhHHHHhhhhhHHHHhcCCCCCchH
Q psy2448 53 LKARRVFVSAGGLKRVQALKPPAGSEL 79 (151)
Q Consensus 53 ~kaRr~FVtSGGLkklQei~~e~gs~L 79 (151)
++.|+.++..||+..+=++-......+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i 28 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEV 28 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 347888999999988877633333343
No 31
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=26.20 E-value=12 Score=25.12 Aligned_cols=29 Identities=7% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHhhcCChhhhhhccCCCccHHHHHHHhhcCCCC
Q psy2448 84 TMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQV 117 (151)
Q Consensus 84 ~~IN~cfPeEIV~YYSPgY~e~LL~kld~y~p~~ 117 (151)
..+-.|||+|.. +|++.|.+-++++.-..
T Consensus 3 a~va~cYp~~~~-----~Fp~~L~~lL~~~~~~L 31 (52)
T PF08158_consen 3 AHVAHCYPKETK-----DFPQELIDLLRNHHTVL 31 (52)
T ss_pred cccccccHHHHH-----HHHHHHHHHHHhccccC
Confidence 346689999754 57999999999886554
No 32
>PLN00135 malate dehydrogenase
Probab=25.60 E-value=76 Score=27.52 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=38.3
Q ss_pred CChHHHHHHH-HHHHHHHHhccccchhhhhh-ccC-ChhhHHHHHHHHHhhcCC
Q psy2448 1 MPPQELKSRN-SGLQISFLSNVSFSFVDLLL-YES-PPEILLPALKQLCKIFPV 51 (151)
Q Consensus 1 ~~~~DLk~K~-rALK~IiqKct~l~ALEpLL-~~a-P~~ILKyVl~QfsKvLP~ 51 (151)
|+-.||-.++ +-+|.|.+++..-.+=+..+ .-+ |-+++-|++.+++...|+
T Consensus 74 ~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~ 127 (309)
T PLN00135 74 MERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPE 127 (309)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCc
Confidence 4567888888 99999999997742234333 344 999999999999986553
No 33
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=25.49 E-value=90 Score=30.95 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHH
Q psy2448 1 MPPQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELC 80 (151)
Q Consensus 1 ~~~~DLk~K~rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~ 80 (151)
|+.++|+.|+..+|.-+++...+ +.+|-+| =.+.+-+..+.=.+-|.|+++...++...| .|=+++...|.+|.
T Consensus 26 lsd~~L~~~t~~~~~~l~~~~~l---d~~l~ea-fA~vrEa~~R~lglrpydVQlig~l~l~~G--~Iaem~TGeGKTLt 99 (762)
T TIGR03714 26 LSDEELQAKTAEFKNRLVEGESL---DDILPEA-YAVVREADKRVLGMFPYDVQVLGAIVLHQG--NIAEMKTGEGKTLT 99 (762)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCh---HHHHHHH-HHHHHHHHHhhcCCCccHHHHHHHHHhcCC--ceeEecCCcchHHH
Confidence 56789999999999988876543 4344322 023333444444578999999999998888 68889999999987
Q ss_pred HHHHHhhcCChhhhhhccCCCccHHHHHHHh
Q psy2448 81 EAVTMINSYFPEDIVRYYSPRCTDHLLAKVD 111 (151)
Q Consensus 81 E~I~~IN~cfPeEIV~YYSPgY~e~LL~kld 111 (151)
-.+-.+-+.....=|..-+|. +.|.++..
T Consensus 100 a~Lpa~l~aL~g~~V~VVTpn--~yLA~Rda 128 (762)
T TIGR03714 100 ATMPLYLNALTGKGAMLVTTN--DYLAKRDA 128 (762)
T ss_pred HHHHHHHHhhcCCceEEeCCC--HHHHHHHH
Confidence 655443222333346666765 44444433
No 34
>KOG2759|consensus
Probab=25.16 E-value=1.1e+02 Score=28.87 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=55.2
Q ss_pred HhccccchhhhhhccC-ChhhHHHHHHHHHhhcCCCh------HHhHHHHhhhhhHHHHhcCCC--CCchHHHHHHHhh
Q psy2448 18 LSNVSFSFVDLLLYES-PPEILLPALKQLCKIFPVDL------KARRVFVSAGGLKRVQALKPP--AGSELCEAVTMIN 87 (151)
Q Consensus 18 qKct~l~ALEpLL~~a-P~~ILKyVl~QfsKvLP~D~------kaRr~FVtSGGLkklQei~~e--~gs~L~E~I~~IN 87 (151)
.+...++.|--++.++ =++|.+-|+.-|..+|++.+ .+.-+-|..+-++.+|.++.. .+..|.++|+.|-
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3445556666667765 67999999999999999985 455688999999999999655 6777888887764
No 35
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=25.04 E-value=59 Score=21.80 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=21.2
Q ss_pred chhhhhhccC--ChhhHHHHHHHHHhhc
Q psy2448 24 SFVDLLLYES--PPEILLPALKQLCKIF 49 (151)
Q Consensus 24 ~ALEpLL~~a--P~~ILKyVl~QfsKvL 49 (151)
.+|+-|+++- +|.+...|+.||=|.+
T Consensus 17 dtLDeli~~~~I~p~La~kVL~~FDksi 44 (49)
T PF02268_consen 17 DTLDELIQEGKITPQLAMKVLEQFDKSI 44 (49)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5788888864 9999999999998864
No 36
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=24.70 E-value=84 Score=27.22 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=37.9
Q ss_pred ChHHHHHHH-HHHHHHHHhccccchhhhhhc-cC-ChhhHHHHHHHHHhhcCC
Q psy2448 2 PPQELKSRN-SGLQISFLSNVSFSFVDLLLY-ES-PPEILLPALKQLCKIFPV 51 (151)
Q Consensus 2 ~~~DLk~K~-rALK~IiqKct~l~ALEpLL~-~a-P~~ILKyVl~QfsKvLP~ 51 (151)
+..||-..+ +-+|.+.++......=+..+- -+ |-+++-||+.+++..+|+
T Consensus 92 tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~ 144 (324)
T TIGR01758 92 ERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPP 144 (324)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCc
Confidence 457788888 999999999888742343333 33 999999999999976664
No 37
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=23.99 E-value=33 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=28.2
Q ss_pred ChhhhhhccCCCccHHHHHHHhhcC---------CCCCCCccccCCCC
Q psy2448 90 FPEDIVRYYSPRCTDHLLAKVDQFT---------PQVSLPLITCAPDT 128 (151)
Q Consensus 90 fPeEIV~YYSPgY~e~LL~kld~y~---------p~~~~~~~~~~~~~ 128 (151)
|=|||-+=| |.||+..+++|.++. -++...=.||.+|-
T Consensus 4 l~eEI~rdY-~n~s~~v~E~l~~~~~~Lkq~f~~~qS~~~~mTC~~Pe 50 (100)
T PF11291_consen 4 LKEEIRRDY-PNFSEEVFEKLNRCSVKLKQYFDKLQSKKENMTCNRPE 50 (100)
T ss_pred HHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHhcccCcccCCCC
Confidence 456777666 789999999998662 33457788999874
No 38
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=23.91 E-value=1.7e+02 Score=19.91 Aligned_cols=50 Identities=24% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhh-cc--CChhhHHHHHHHHHhhcCCCh
Q psy2448 4 QELKSRNSGLQISFLSNVSFSFVDLLL-YE--SPPEILLPALKQLCKIFPVDL 53 (151)
Q Consensus 4 ~DLk~K~rALK~IiqKct~l~ALEpLL-~~--aP~~ILKyVl~QfsKvLP~D~ 53 (151)
-++|.-.|-+...|+.+.-+-++-.+. .. -|.+.|...-.++.+.-.||.
T Consensus 10 ~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~ 62 (79)
T smart00872 10 PYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDA 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCccc
Confidence 366777788888888888777776555 23 277888888888888888886
No 39
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=23.89 E-value=1.2e+02 Score=26.31 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=20.2
Q ss_pred hhhhccCCCccHHHHHHHhhcCCCC
Q psy2448 93 DIVRYYSPRCTDHLLAKVDQFTPQV 117 (151)
Q Consensus 93 EIV~YYSPgY~e~LL~kld~y~p~~ 117 (151)
+|.++..++-.+.+|+.|++..|..
T Consensus 209 ~Iln~~~~~~~~~il~~L~~~d~~~ 233 (339)
T PRK05686 209 EILNNLDRQTEKTILESLEEEDPEL 233 (339)
T ss_pred HHHhcCCchHHHHHHHHHHhhCHHH
Confidence 5777888888889999999877653
No 40
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.62 E-value=65 Score=29.88 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=46.5
Q ss_pred CChHHHHHHH-HHHHHHHHhccccch--hhhhhccC-ChhhHHHHHHHHHhhcCCChHHhHHHHhhhhh
Q psy2448 1 MPPQELKSRN-SGLQISFLSNVSFSF--VDLLLYES-PPEILLPALKQLCKIFPVDLKARRVFVSAGGL 65 (151)
Q Consensus 1 ~~~~DLk~K~-rALK~IiqKct~l~A--LEpLL~~a-P~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGL 65 (151)
|+-.||-.++ +-+|.+.++...... --=|+.-+ |-+++-||+.++|+=+| |+.|+..|+|
T Consensus 215 ~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP-----~~rVig~gtl 278 (452)
T cd05295 215 EDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIP-----RKNIIAVARL 278 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCC-----HHHEEEecch
Confidence 4567888888 999999999888766 55566665 99999999999995565 3456666665
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.05 E-value=1.2e+02 Score=17.15 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=14.8
Q ss_pred ChHHHHHHH-HHHHHHHHhc
Q psy2448 2 PPQELKSRN-SGLQISFLSN 20 (151)
Q Consensus 2 ~~~DLk~K~-rALK~IiqKc 20 (151)
|..+.|.-+ ++|..|.+.|
T Consensus 12 ~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 12 PSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp SSHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHhhC
Confidence 456778878 9999988876
No 42
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=21.68 E-value=1.2e+02 Score=24.51 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=50.6
Q ss_pred hhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHHHHHhhcCChhhhhhccCCCccHHHHH
Q psy2448 29 LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLA 108 (151)
Q Consensus 29 LL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~I~~IN~cfPeEIV~YYSPgY~e~LL~ 108 (151)
++...+++++|.|+.++-..- .....-..+=-+--|-.+-.|..+.+..++..++++|-||-+.- .|++.--..-|+
T Consensus 24 li~~~~~~~~k~~~~rll~~~-~~~~~~~~ltp~ElLv~lH~id~~~~~~~k~~~~a~~~Cf~~~~--vf~~evla~~l~ 100 (183)
T PF12295_consen 24 LISLEPPKVVKEVFNRLLQAP-SSSTGESPLTPSELLVALHNIDPEKDVPLKKIIEALDLCFSMRD--VFTQEVLASALQ 100 (183)
T ss_pred HHHcCCHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHcccc--cCCHHHHHHHHH
Confidence 333357788888888777642 22222223333445666777755555789999999999996543 566554444455
Q ss_pred HHhhc
Q psy2448 109 KVDQF 113 (151)
Q Consensus 109 kld~y 113 (151)
++-+-
T Consensus 101 ql~~~ 105 (183)
T PF12295_consen 101 QLVEQ 105 (183)
T ss_pred HHHCC
Confidence 55444
No 43
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=21.44 E-value=28 Score=27.70 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred HHHhhhhh------HHHHhcCCCCCchHHHHHHHhhcCChh
Q psy2448 58 VFVSAGGL------KRVQALKPPAGSELCEAVTMINSYFPE 92 (151)
Q Consensus 58 ~FVtSGGL------kklQei~~e~gs~L~E~I~~IN~cfPe 92 (151)
.||-+-.+ +.++++.. +...|+-+|+.||.||--
T Consensus 83 eFVYN~NlGR~~~~~~l~~~~~-~~~el~~~i~~IN~~FDk 122 (133)
T PF09385_consen 83 EFVYNVNLGRSELLKYLFKLGI-DWNELQPIIEKINYFFDK 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 35555444 34454322 455789999999999954
No 44
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=21.37 E-value=1.3e+02 Score=22.65 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=36.5
Q ss_pred ChHHHHHHH-HHHHHHHHhccccchhhhhhc-cC-ChhhHHHHHHHHHhhcCC
Q psy2448 2 PPQELKSRN-SGLQISFLSNVSFSFVDLLLY-ES-PPEILLPALKQLCKIFPV 51 (151)
Q Consensus 2 ~~~DLk~K~-rALK~IiqKct~l~ALEpLL~-~a-P~~ILKyVl~QfsKvLP~ 51 (151)
+-.||-.++ +-+|.+..++.... =+.++- -+ |-+++-|++.+++..-|+
T Consensus 86 sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~ 137 (141)
T PF00056_consen 86 SRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPN 137 (141)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGG
T ss_pred cHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcc
Confidence 456777788 88999888887765 343333 34 999999999999987654
No 45
>KOG1684|consensus
Probab=21.34 E-value=2.1e+02 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=12.3
Q ss_pred CchHHHHHHHhhcCCh
Q psy2448 76 GSELCEAVTMINSYFP 91 (151)
Q Consensus 76 gs~L~E~I~~IN~cfP 91 (151)
-..+...++.||+||-
T Consensus 259 ~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 259 SFSLSLKLDVINKCFS 274 (401)
T ss_pred cccchhhHHHHHHhhc
Confidence 3456678999999995
No 46
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=21.14 E-value=5.2e+02 Score=21.95 Aligned_cols=89 Identities=17% Similarity=0.043 Sum_probs=53.5
Q ss_pred hHHHHHHH--HHHHHHHHhccccc-----hhhhhhcc--CChhhHHHHHHHHHhhcCCC---hH-HhHHHHhhhhhHHHH
Q psy2448 3 PQELKSRN--SGLQISFLSNVSFS-----FVDLLLYE--SPPEILLPALKQLCKIFPVD---LK-ARRVFVSAGGLKRVQ 69 (151)
Q Consensus 3 ~~DLk~K~--rALK~IiqKct~l~-----ALEpLL~~--aP~~ILKyVl~QfsKvLP~D---~k-aRr~FVtSGGLkklQ 69 (151)
+.++..++ .-|..+...--++. ++-..|.+ -|..|+++|++.|++....+ .+ ..+..+.-=|..-|+
T Consensus 162 s~~~~~~~L~~il~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~~~vl~~~~~~~~~~~~~~~Ld~~ki~~~~a~~lL~ 241 (325)
T PF09724_consen 162 SPSYLFEILDLILTSAVEESWDLDQFPVEEVVEALEEDEYPREVVEHVLRKFGTREDDDDSWWKLDEDKICRWFAIQLLK 241 (325)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHhcccCCCHHHHHHHHHHhCCCccCCCceEEcCHHHHHHHHHHHHHH
Confidence 45556665 44555555443222 22233332 49999999999999887664 11 112233333444444
Q ss_pred hcCCCCCchHHHHHHHhhcCChh
Q psy2448 70 ALKPPAGSELCEAVTMINSYFPE 92 (151)
Q Consensus 70 ei~~e~gs~L~E~I~~IN~cfPe 92 (151)
+.++. .-.+.|..+...+.+|+
T Consensus 242 ~~~~~-~~~~~eFl~~Wk~~lP~ 263 (325)
T PF09724_consen 242 AHASS-SFPLDEFLEAWKSSLPE 263 (325)
T ss_pred hcccC-CCCHHHHHHHHHHhCCC
Confidence 44433 55789999999999998
No 47
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=21.00 E-value=1.4e+02 Score=26.96 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 33 SPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 33 aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
.-+.+..=.++=++.++=+++++|+.|+..|+..++.+.
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 345677777888999999999999999999999888776
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.93 E-value=83 Score=26.37 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=29.9
Q ss_pred CChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 33 SPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 33 aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
...+....++.-++.+| ...+.|..|+.+||++.+-.+-
T Consensus 162 ~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 162 SDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHH
Confidence 34556677777777777 8899999999999999988875
No 49
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=20.83 E-value=2.2e+02 Score=24.35 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=58.1
Q ss_pred HHhccccchhhhhhccCChhhHHHHHHHHHh------hcCCChHHhHHHHhhhh---------hHHHHhcCCCCCchHHH
Q psy2448 17 FLSNVSFSFVDLLLYESPPEILLPALKQLCK------IFPVDLKARRVFVSAGG---------LKRVQALKPPAGSELCE 81 (151)
Q Consensus 17 iqKct~l~ALEpLL~~aP~~ILKyVl~QfsK------vLP~D~kaRr~FVtSGG---------LkklQei~~e~gs~L~E 81 (151)
=.+-+.|..||.+|.+.-..-+-..|.+|-. -=|.|..+|..+++++- =..||.++.+....+..
T Consensus 84 ~~~~~~l~~le~~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~ 163 (322)
T TIGR02492 84 DSRASALSQIENLFNDLDESGLSTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKS 163 (322)
T ss_pred HHHHHHHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888887543344444444433 36999999999998764 24677777788888888
Q ss_pred HHHHhhcCC------hhhhhhccC
Q psy2448 82 AVTMINSYF------PEDIVRYYS 99 (151)
Q Consensus 82 ~I~~IN~cf------PeEIV~YYS 99 (151)
.|+.||..- =.+|....+
T Consensus 164 ~V~~iN~ll~~Ia~lN~~I~~~~~ 187 (322)
T TIGR02492 164 AVTEINSLLKQIASLNKEIQQVEA 187 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888753 457777665
No 50
>PF10457 MENTAL: Cholesterol-capturing domain; InterPro: IPR019498 The following proteins share a conserved region called the MENTAL (MLN64 N-terminal) domain, composed of four transmembrane helices with three short intervening loops [, , ]: Animal MLN64 (metastatic lymph node 64), a late endosomal membrane protein containing a carboxyl-terminal cholesterol binding START domain (IPR002913 from INTERPRO). It is probably involved in intracellular cholesterol transport. Mammalian MENTHO (MLN64 N-terminal domain homologue), a late endosomal protein containing only the MENTAL domain. It is probably involved in cellular cholesterol homoeostasis. The ~170-amino acid MENTAL domain mediates MLN64 and MENTHO homo- and hetero- interactions, targets both proteins to late endosomes and binds cholesterol. The MENTAL domain might serve to maintain cholesterol at the membrane of late endosomes prior to its shuttle to cytoplasmic acceptor(s) through the START domain.
Probab=20.60 E-value=46 Score=27.39 Aligned_cols=44 Identities=25% Similarity=0.482 Sum_probs=28.7
Q ss_pred hhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHHHHHhhcCChhhhhhccCCCccH
Q psy2448 47 KIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTD 104 (151)
Q Consensus 47 KvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~I~~IN~cfPeEIV~YYSPgY~e 104 (151)
||||.-.++++.+... .|+ ..|..+-|+.. +..--+||||.+|.
T Consensus 128 rVlPqE~~~~~~~~~~-----~~~-~~er~pll~~~--------~~s~~~Fysp~~s~ 171 (171)
T PF10457_consen 128 RVLPQEREAERRYLAA-----VQS-ASERAPLLQPS--------PVSSGQFYSPPESE 171 (171)
T ss_pred eecchhHHHHHHHHhc-----ccC-ccccCcccCCC--------CCCCccccCCCCCC
Confidence 7899999999988543 121 22233333322 77889999998763
No 51
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=20.55 E-value=95 Score=24.73 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=25.1
Q ss_pred hhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHH
Q psy2448 25 FVDLLLYESPPEILLPALKQLCKIFPVDLKARRVF 59 (151)
Q Consensus 25 ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~F 59 (151)
.+++++...|..|++..+. -+||++..+|+.|
T Consensus 89 ~~~~~~~r~P~~il~~aV~---gMLPkn~lgr~~~ 120 (143)
T CHL00159 89 TFEELQNRLPNRIIEKAVK---GMLPKGPLGRKLF 120 (143)
T ss_pred cHHHHhhcCHHHHHHHHHH---hcCCCChhHHHHH
Confidence 3567788889999998776 5899988777654
No 52
>KOG1293|consensus
Probab=20.25 E-value=1.8e+02 Score=28.87 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhccccchhh---hhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchH
Q psy2448 5 ELKSRNSGLQISFLSNVSFSFVD---LLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSEL 79 (151)
Q Consensus 5 DLk~K~rALK~IiqKct~l~ALE---pLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L 79 (151)
+|++-.|+.++.=.-.....--+ +||++.-.-|.+-+++-+..++-.=+.-|-.|+++||.+.|-++-..+....
T Consensus 400 ~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~ 477 (678)
T KOG1293|consen 400 CLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNS 477 (678)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchH
Confidence 34443344443333333333344 4455555689999999999999999999999999999999999976666553
Done!