Query psy2448
Match_columns 151
No_of_seqs 67 out of 69
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 16:34:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 98.2 3.5E-06 1.2E-10 71.2 7.5 102 3-104 371-494 (510)
2 2z6h_A Catenin beta-1, beta-ca 97.9 3.2E-05 1.1E-09 66.6 8.4 98 3-101 429-557 (644)
3 3tpo_A Importin subunit alpha- 97.5 0.0002 6.7E-09 60.5 7.2 91 3-93 390-499 (529)
4 1wa5_B Importin alpha subunit; 96.6 0.004 1.4E-07 51.7 6.5 91 3-93 396-512 (530)
5 1jdh_A Beta-catenin; beta-cate 95.8 0.057 2E-06 43.5 9.0 81 3-84 432-522 (529)
6 2z6g_A B-catenin; FULL-length, 95.6 0.042 1.4E-06 49.4 8.6 78 3-81 565-652 (780)
7 2jdq_A Importin alpha-1 subuni 95.0 0.016 5.5E-07 45.6 3.5 90 4-93 332-445 (450)
8 4hxt_A De novo protein OR329; 94.8 0.12 4E-06 37.2 7.3 79 3-81 141-230 (252)
9 4hxt_A De novo protein OR329; 93.8 0.45 1.6E-05 34.1 8.6 110 3-112 15-139 (252)
10 4db6_A Armadillo repeat protei 93.7 0.5 1.7E-05 33.6 8.6 110 3-112 25-149 (210)
11 4db6_A Armadillo repeat protei 93.4 0.37 1.3E-05 34.3 7.5 79 3-81 109-198 (210)
12 4b8j_A Importin subunit alpha- 93.1 0.3 1E-05 40.2 7.4 88 4-91 385-496 (528)
13 4db8_A Armadillo-repeat protei 92.7 0.74 2.5E-05 33.5 8.3 79 3-81 151-240 (252)
14 4db8_A Armadillo-repeat protei 91.7 1.2 4.1E-05 32.4 8.5 108 5-112 27-149 (252)
15 1xm9_A Plakophilin 1; armadill 91.6 0.4 1.4E-05 40.0 6.5 88 3-91 344-449 (457)
16 1xqr_A HSPBP1 protein; armadil 89.1 1.6 5.3E-05 35.4 7.8 111 3-113 138-265 (296)
17 1xqr_A HSPBP1 protein; armadil 86.8 2.2 7.5E-05 34.5 7.4 115 2-116 94-224 (296)
18 1wa5_B Importin alpha subunit; 81.1 16 0.00054 30.1 10.3 109 4-112 271-394 (530)
19 2jdq_A Importin alpha-1 subuni 81.1 12 0.00042 29.1 9.1 109 4-112 206-329 (450)
20 1jdh_A Beta-catenin; beta-cate 75.9 13 0.00046 29.7 8.1 78 4-81 74-161 (529)
21 3ul1_B Importin subunit alpha- 75.9 13 0.00046 31.0 8.5 109 3-111 287-411 (510)
22 4b8j_A Importin subunit alpha- 75.5 24 0.00082 28.8 9.7 109 4-112 217-339 (528)
23 3tpo_A Importin subunit alpha- 65.7 33 0.0011 28.6 8.7 108 3-110 306-429 (529)
24 2z6h_A Catenin beta-1, beta-ca 63.6 24 0.00084 30.1 7.6 109 4-112 71-193 (644)
25 2z6g_A B-catenin; FULL-length, 60.8 37 0.0013 30.4 8.5 109 4-112 207-329 (780)
26 3nmw_A APC variant protein; AR 60.1 24 0.00082 29.1 6.7 62 20-81 262-323 (354)
27 3coq_A Regulatory protein GAL4 53.8 11 0.00039 24.4 3.1 35 4-38 48-83 (89)
28 3nmz_A APC variant protein; pr 53.3 29 0.001 29.9 6.4 62 20-81 378-439 (458)
29 3ljm_A Coil Ser L9C; de novo d 48.6 9.4 0.00032 22.7 1.8 19 3-21 3-21 (31)
30 2vgl_B AP-2 complex subunit be 48.6 12 0.00042 32.0 3.3 59 3-61 403-471 (591)
31 1xm9_A Plakophilin 1; armadill 39.0 59 0.002 26.8 5.9 78 4-81 16-105 (457)
32 3l6x_A Catenin delta-1; cateni 33.5 1.1E+02 0.0037 27.5 7.0 71 2-72 367-454 (584)
33 3p01_A Two-component response 32.6 51 0.0018 22.8 3.9 50 4-53 13-64 (184)
34 3now_A UNC-45 protein, SD10334 30.0 60 0.0021 30.5 4.9 77 5-81 638-726 (810)
35 3now_A UNC-45 protein, SD10334 29.5 1.1E+02 0.0039 28.6 6.7 56 20-75 707-762 (810)
36 3ist_A Glutamate racemase; str 29.4 8.5 0.00029 31.1 -0.7 16 17-32 183-198 (269)
37 2oba_A Probable 6-pyruvoyl tet 28.4 61 0.0021 23.9 3.9 41 11-51 77-119 (138)
38 2lyy_A Uncharacterized protein 27.5 14 0.00047 26.7 0.2 40 58-113 45-84 (96)
39 2bez_F E2 glycoprotein; coiled 27.4 27 0.00092 22.1 1.5 13 78-90 26-38 (42)
40 1w63_A Adapter-related protein 26.0 1.6E+02 0.0055 25.4 6.6 57 3-59 155-217 (618)
41 3nmz_A APC variant protein; pr 25.5 2.4E+02 0.0081 24.2 7.5 83 4-86 301-403 (458)
42 3dad_A FH1/FH2 domain-containi 24.7 60 0.002 27.9 3.6 46 33-78 130-175 (339)
43 1zpy_A Hypothetical protein NE 24.5 51 0.0017 23.8 2.7 46 2-47 9-58 (95)
44 2r9g_A AAA ATPase, central reg 22.0 44 0.0015 27.1 2.1 26 87-112 160-191 (204)
45 3gx0_A GST-like protein YFCG; 21.5 55 0.0019 23.2 2.4 24 35-58 73-96 (215)
46 4ikh_A Glutathione S-transfera 21.1 59 0.002 23.7 2.6 25 34-58 92-116 (244)
47 3l6x_A Catenin delta-1; cateni 21.0 2.8E+02 0.0097 24.8 7.4 68 4-71 62-141 (584)
48 5mdh_A Malate dehydrogenase; o 21.0 53 0.0018 27.1 2.5 51 1-51 95-148 (333)
49 3k6c_A Uncharacterized protein 20.8 67 0.0023 23.2 2.7 46 2-47 9-58 (95)
50 3v2d_N 50S ribosomal protein L 20.8 74 0.0025 24.2 3.1 31 26-59 87-117 (140)
51 3uhf_A Glutamate racemase; str 20.6 17 0.0006 29.6 -0.5 17 16-32 200-216 (274)
52 3r8s_J 50S ribosomal protein L 20.4 82 0.0028 24.0 3.3 31 26-59 89-119 (142)
53 3bge_A Predicted ATPase; struc 20.1 58 0.002 26.3 2.5 27 87-113 155-186 (201)
54 2d4y_A HAP1, flagellar HOOK-as 20.1 1E+02 0.0036 26.1 4.2 81 18-99 23-124 (463)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.19 E-value=3.5e-06 Score=71.24 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=71.3
Q ss_pred hHHHHHHH-HHHHHHHHhc-----------cccchhhhhhccCChhhHHHHHH------HHHhhcCCChHHhHHHHhhhh
Q psy2448 3 PQELKSRN-SGLQISFLSN-----------VSFSFVDLLLYESPPEILLPALK------QLCKIFPVDLKARRVFVSAGG 64 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKc-----------t~l~ALEpLL~~aP~~ILKyVl~------QfsKvLP~D~kaRr~FVtSGG 64 (151)
..+.|+.+ .||.++...+ .-+++|-.||....++|+..+|. |+++-++++.+.++.|...||
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 450 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 450 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence 35677777 8888876543 34677777787778899988875 455556888999999999999
Q ss_pred hHHHHhcCCCCCchHHH-HHHHhhcCChh---hhhhccCCCccH
Q psy2448 65 LKRVQALKPPAGSELCE-AVTMINSYFPE---DIVRYYSPRCTD 104 (151)
Q Consensus 65 LkklQei~~e~gs~L~E-~I~~IN~cfPe---EIV~YYSPgY~e 104 (151)
+++|++++......+++ +.+.|+.+|++ |...++...+++
T Consensus 451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~ 494 (510)
T 3ul1_B 451 LDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 494 (510)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCcc
Confidence 99999999888888865 78899999984 344454444443
No 2
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.92 E-value=3.2e-05 Score=66.58 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=82.1
Q ss_pred hHHHHHHH-HHHHH---------HHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 3 PQELKSRN-SGLQI---------SFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 3 ~~DLk~K~-rALK~---------IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
+++++..+ .||.. .+.++.-++.|-.||....++|.+.++.-++++. .+.+.|+.|...||+..|+++.
T Consensus 429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l~~L~~ll 507 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL 507 (644)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCChhHHHHHH
Confidence 56777777 88874 5778888999999999888999999999888865 5789999999999999999998
Q ss_pred CCCCchHHH----------------H-----HHHhhcCChhhhhhccCCC
Q psy2448 73 PPAGSELCE----------------A-----VTMINSYFPEDIVRYYSPR 101 (151)
Q Consensus 73 ~e~gs~L~E----------------~-----I~~IN~cfPeEIV~YYSPg 101 (151)
..++..+++ | ++.|+++|++|.++||.+.
T Consensus 508 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~~~w~~~~ 557 (644)
T 2z6h_A 508 HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETA 557 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSCGGGC---
T ss_pred cCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCCccccccc
Confidence 888877755 3 6689999999999999543
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.52 E-value=0.0002 Score=60.51 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=66.9
Q ss_pred hHHHHHHH-HHHHHHHHhcc-----------ccchhhhhhccCChhhHHHHHHHHHhh------cCCChHHhHHHHhhhh
Q psy2448 3 PQELKSRN-SGLQISFLSNV-----------SFSFVDLLLYESPPEILLPALKQLCKI------FPVDLKARRVFVSAGG 64 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKct-----------~l~ALEpLL~~aP~~ILKyVl~QfsKv------LP~D~kaRr~FVtSGG 64 (151)
..++|..+ .||.++...++ -+++|=.||...-++|+..+|.-+..+ +.++.+.++.|..+||
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 469 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 469 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCc
Confidence 34566666 88888776443 355666677767788888887655544 5788889999999999
Q ss_pred hHHHHhcCCCCCchHHH-HHHHhhcCChhh
Q psy2448 65 LKRVQALKPPAGSELCE-AVTMINSYFPED 93 (151)
Q Consensus 65 LkklQei~~e~gs~L~E-~I~~IN~cfPeE 93 (151)
+.+|++++......+++ ..+.|..+|++|
T Consensus 470 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 470 LDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999888888877 466777777754
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.60 E-value=0.004 Score=51.72 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=68.2
Q ss_pred hHHHHHHH-HHHHHHHHhcc-------------ccchhhhhhccCChhhHHHHHHHHHhhcCCCh-----------HHhH
Q psy2448 3 PQELKSRN-SGLQISFLSNV-------------SFSFVDLLLYESPPEILLPALKQLCKIFPVDL-----------KARR 57 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKct-------------~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~-----------kaRr 57 (151)
..++|..+ .||.++....+ -++.|-.+|...-+.+..+++.-+..++-... ...+
T Consensus 396 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~ 475 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENAD 475 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHH
Confidence 34667777 88888877543 35666667777777888888777777765433 2567
Q ss_pred HHHhhhhhHHHHhcCCCCCchHH-HHHHHhhcCChhh
Q psy2448 58 VFVSAGGLKRVQALKPPAGSELC-EAVTMINSYFPED 93 (151)
Q Consensus 58 ~FVtSGGLkklQei~~e~gs~L~-E~I~~IN~cfPeE 93 (151)
.|...||+.+|+.+...+...++ ..+..|+++|++|
T Consensus 476 ~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 476 FIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 89999999999999888888884 4778888888754
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.76 E-value=0.057 Score=43.54 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=64.1
Q ss_pred hHHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 3 PQELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 3 ~~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
+++++..+ .||..+ +..+.-++.|-.++.+.-++|.+.+..-++.+. .|...++.|+..||+.+|+++.
T Consensus 432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~-~~~~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHcCChHHHHHHh
Confidence 45565555 666654 555667788888898888899999888877754 6789999999999999999998
Q ss_pred CCCCchHHHHHH
Q psy2448 73 PPAGSELCEAVT 84 (151)
Q Consensus 73 ~e~gs~L~E~I~ 84 (151)
..+...++++..
T Consensus 511 ~~~~~~v~~~a~ 522 (529)
T 1jdh_A 511 HSRNEGVATYAA 522 (529)
T ss_dssp GCSSHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 888888877543
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.64 E-value=0.042 Score=49.39 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=65.8
Q ss_pred hHHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 3 PQELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 3 ~~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
+++++..+ .||..+ |..+.-++.|-.||....++|.+.++.-++.+. .|.+.|+.|...||+..|.++.
T Consensus 565 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 565 MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHH
Confidence 46777777 888774 677888999999999989999999988888775 7899999999999999999997
Q ss_pred CCCCchHHH
Q psy2448 73 PPAGSELCE 81 (151)
Q Consensus 73 ~e~gs~L~E 81 (151)
......+++
T Consensus 644 ~~~~~~Vr~ 652 (780)
T 2z6g_A 644 HSRNEGVAT 652 (780)
T ss_dssp GCSCHHHHH
T ss_pred cCCCHHHHH
Confidence 777777654
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.04 E-value=0.016 Score=45.58 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred HHHHHHH-HHHHHHHHhc-----------cccchhhhhhccCChhhHHHHHHHHHhhcCCCh-----------HHhHHHH
Q psy2448 4 QELKSRN-SGLQISFLSN-----------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDL-----------KARRVFV 60 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqKc-----------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~-----------kaRr~FV 60 (151)
.++|..+ .||-++.... .-+++|-.+|....+.+.+.++.-+..++-... .....|.
T Consensus 332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~ 411 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIE 411 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHH
Confidence 4566666 7887776542 245555666666667888877766666554332 2457899
Q ss_pred hhhhhHHHHhcCCCCCchHHH-HHHHhhcCChhh
Q psy2448 61 SAGGLKRVQALKPPAGSELCE-AVTMINSYFPED 93 (151)
Q Consensus 61 tSGGLkklQei~~e~gs~L~E-~I~~IN~cfPeE 93 (151)
..||+.+|+.+...+...+++ .+..|+++|++|
T Consensus 412 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 412 EAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 999999999998777666654 788899988765
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.82 E-value=0.12 Score=37.19 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=61.4
Q ss_pred hHHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
..+++..+ .+|.++... ..-++.|-.+|...-+.+...++.=++.+.-+++..++.++..|++..+.++
T Consensus 141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 34566666 777766542 2245667777777677999999999999999999999999999999999999
Q ss_pred CCCCCchHHH
Q psy2448 72 KPPAGSELCE 81 (151)
Q Consensus 72 ~~e~gs~L~E 81 (151)
-......+++
T Consensus 221 l~~~~~~v~~ 230 (252)
T 4hxt_A 221 LTSTDSEVQK 230 (252)
T ss_dssp GGCSCHHHHH
T ss_pred HCCCcHHHHH
Confidence 6666666655
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.82 E-value=0.45 Score=34.08 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=75.4
Q ss_pred hHHHHHHH-HHHHHHHHhcc----------ccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFLSNV----------SFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKct----------~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
..++|..+ ++|..+..... -++.|-.+|...-+.+...++.-++.+.-++...|+.++..|++..+-++
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 35666677 88877766543 45666677776678999999999999999999999999999999999888
Q ss_pred CCCCCchHHH-HHHHhhc---CChhhhhhccCCCccHHHHHHHhh
Q psy2448 72 KPPAGSELCE-AVTMINS---YFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 72 ~~e~gs~L~E-~I~~IN~---cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
-......+++ .+..+.+ ..|+-.......|.-+.|++-+..
T Consensus 95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 139 (252)
T 4hxt_A 95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 139 (252)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 5555555544 3333332 234333334445666666665553
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.72 E-value=0.5 Score=33.59 Aligned_cols=110 Identities=18% Similarity=0.116 Sum_probs=77.1
Q ss_pred hHHHHHHH-HHHHHHHHhc----------cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFLSN----------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKc----------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
..+++..+ .+|..+.... --+++|-.+|...-+.+...++.-++.+.-++...|..++..||+..|-++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 45667777 8887776432 235666677777677899999999999998999999999999999998888
Q ss_pred CCCCCchHHH-HH---HHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448 72 KPPAGSELCE-AV---TMINSYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 72 ~~e~gs~L~E-~I---~~IN~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
=..+...+++ .. ..|-...++.+-.....|.-+.|++-++.
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 149 (210)
T 4db6_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC
Confidence 5555555544 33 33333345544445566777777776653
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.41 E-value=0.37 Score=34.32 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=60.5
Q ss_pred hHHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
..+++..+ .||.++... ..-++.|-.+|...-+.+.++++.-++.+.-++...|..++..|++..|.++
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 188 (210)
T 4db6_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH
Confidence 34667777 788777632 2235555566666677899999999999999999999999999999999998
Q ss_pred CCCCCchHHH
Q psy2448 72 KPPAGSELCE 81 (151)
Q Consensus 72 ~~e~gs~L~E 81 (151)
-......+++
T Consensus 189 l~~~~~~v~~ 198 (210)
T 4db6_A 189 QSHENEKIQK 198 (210)
T ss_dssp GGCSCHHHHH
T ss_pred HhCCCHHHHH
Confidence 6666666655
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.06 E-value=0.3 Score=40.21 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=64.8
Q ss_pred HHHHHHH-HHHHHHHHh-----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChH-----------HhHHHH
Q psy2448 4 QELKSRN-SGLQISFLS-----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLK-----------ARRVFV 60 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqK-----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~k-----------aRr~FV 60 (151)
.++|..+ .||.++... ..-++.|-.||...-+.+...++.-+..++-...+ .+..|.
T Consensus 385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~ 464 (528)
T 4b8j_A 385 FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID 464 (528)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence 4667777 888888766 34566777777777778888888887777754443 677889
Q ss_pred hhhhhHHHHhcCCCCCchHHHHHHH-hhcCCh
Q psy2448 61 SAGGLKRVQALKPPAGSELCEAVTM-INSYFP 91 (151)
Q Consensus 61 tSGGLkklQei~~e~gs~L~E~I~~-IN~cfP 91 (151)
..||+.+|.++.......+++.... |..+|.
T Consensus 465 ~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 465 EAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999988888888776554 344443
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.66 E-value=0.74 Score=33.54 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=61.4
Q ss_pred hHHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
..+++..+ .||.++... ..-++.|-.+|....+.+...++.-++.+.-+++..+..++..|++..|.++
T Consensus 151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHH
Confidence 34566666 777766542 3346667777777778999999999999999999999999999999999998
Q ss_pred CCCCCchHHH
Q psy2448 72 KPPAGSELCE 81 (151)
Q Consensus 72 ~~e~gs~L~E 81 (151)
-......+++
T Consensus 231 l~~~~~~v~~ 240 (252)
T 4db8_A 231 QSHENEKIQK 240 (252)
T ss_dssp TTCSSSHHHH
T ss_pred hCCCCHHHHH
Confidence 6666666655
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.75 E-value=1.2 Score=32.39 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=73.6
Q ss_pred HHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448 5 ELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP 73 (151)
Q Consensus 5 DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~ 73 (151)
+.+..+ ++|..++. +..-++.|-.+|....+.+...++.-++.+.-++.+.|+.++..||+..|-++=.
T Consensus 27 ~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (252)
T 4db8_A 27 QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (252)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 455555 77755443 2334566667777767899999999999999899999999999999999988854
Q ss_pred CCCchHHH-H---HHHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448 74 PAGSELCE-A---VTMINSYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 74 e~gs~L~E-~---I~~IN~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
.+...+++ . +..|-...+..+......|.-+.|++-++.
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC
Confidence 45555544 2 333333333333445566777777777654
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=91.61 E-value=0.4 Score=40.01 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=61.2
Q ss_pred hHHHHHHH-HHHHHHH---------HhccccchhhhhhccC-C-----hhhHHHHHHHHHhhcCCChHHhHHHHhhhhhH
Q psy2448 3 PQELKSRN-SGLQISF---------LSNVSFSFVDLLLYES-P-----PEILLPALKQLCKIFPVDLKARRVFVSAGGLK 66 (151)
Q Consensus 3 ~~DLk~K~-rALK~Ii---------qKct~l~ALEpLL~~a-P-----~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLk 66 (151)
.++.++++ .||.++- .+ .-++.|=.||... | ++++..++..++.++.+|++.++.|+..||+.
T Consensus 344 ~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~ 422 (457)
T 1xm9_A 344 NSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422 (457)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHH
T ss_pred CHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 45666666 7766552 22 1233333444443 2 47999999999999999999999999999999
Q ss_pred HHHhcCCCC-Cch-HHHHHHHhhcCCh
Q psy2448 67 RVQALKPPA-GSE-LCEAVTMINSYFP 91 (151)
Q Consensus 67 klQei~~e~-gs~-L~E~I~~IN~cfP 91 (151)
+|.+|.... ..+ -++.-..|.++|-
T Consensus 423 ~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 423 NIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 999996554 334 3456666777764
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.07 E-value=1.6 Score=35.41 Aligned_cols=111 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred hHHHHHHH-HHHHHHHHhc----------cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFLSN----------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKc----------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
+..+|.++ .||-+|.... .-++.|-.+|......+.+.++.=++.+.-.+++.++.||..|+++.|=++
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L 217 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence 45678888 9998887432 234455555666678999988888888887899999999999999999887
Q ss_pred CCCCCchHHH----HHHHhhcCChhhhhhccC--CCccHHHHHHHhhc
Q psy2448 72 KPPAGSELCE----AVTMINSYFPEDIVRYYS--PRCTDHLLAKVDQF 113 (151)
Q Consensus 72 ~~e~gs~L~E----~I~~IN~cfPeEIV~YYS--PgY~e~LL~kld~y 113 (151)
=..+...+++ .+..|-...+..+..... +.|...|=++++.-
T Consensus 218 L~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l 265 (296)
T 1xqr_A 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265 (296)
T ss_dssp HTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence 4444555554 444555556655554443 34555554555543
No 17
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.78 E-value=2.2 Score=34.52 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=79.7
Q ss_pred ChHHHHHHH-HHHHHHHHhcc-------ccchhhhh---hccC-ChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHH
Q psy2448 2 PPQELKSRN-SGLQISFLSNV-------SFSFVDLL---LYES-PPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQ 69 (151)
Q Consensus 2 ~~~DLk~K~-rALK~IiqKct-------~l~ALEpL---L~~a-P~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQ 69 (151)
+..++|..+ ++|-+|.+... ...+|.+| |... ...+.+-++.-++.+.-+++.++..|+..||+..|-
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~ 173 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 356788888 88888876432 22455554 4443 578999999999999999999999999999999998
Q ss_pred hcCCCCCchHHH-HHHH---hhcCChhhhhhccCCCccHHHHHHHhhcCCC
Q psy2448 70 ALKPPAGSELCE-AVTM---INSYFPEDIVRYYSPRCTDHLLAKVDQFTPQ 116 (151)
Q Consensus 70 ei~~e~gs~L~E-~I~~---IN~cfPeEIV~YYSPgY~e~LL~kld~y~p~ 116 (151)
.+=.....+++. ..-. +=...|+-+.....-|.-+.|.+-+..-.+.
T Consensus 174 ~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~ 224 (296)
T 1xqr_A 174 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSP 224 (296)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCST
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChh
Confidence 773344455433 3333 3233676666666778888888877654443
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=81.11 E-value=16 Score=30.10 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=76.8
Q ss_pred HHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 4 QELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
++++..+ .+|..+... ..-++.|-.+|...-+.+...++.-++.+..++...++.++..|++..|-.+-
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 4555555 777766543 24467777788777788999999999999999999999999999999998885
Q ss_pred CCCCchHH-HHHHHh---hcCChhhhhhccCCCccHHHHHHHhh
Q psy2448 73 PPAGSELC-EAVTMI---NSYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 73 ~e~gs~L~-E~I~~I---N~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
..+...++ +.+..| -...++.+..+...|.-+.|++-+..
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 394 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 55454544 333333 33346655555566777777777754
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=81.06 E-value=12 Score=29.13 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=72.4
Q ss_pred HHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 4 QELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
++++..+ .+|..+... ..-++.|-.+|...-+.+...++.-++.+.-++...++.++..|++..|-++-
T Consensus 206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence 3455555 666665442 23456666777766778999999999999999998888899999999998885
Q ss_pred CCCCchHHH-HHHHhhc---CChhhhhhccCCCccHHHHHHHhh
Q psy2448 73 PPAGSELCE-AVTMINS---YFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 73 ~e~gs~L~E-~I~~IN~---cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
..+...+++ .+..+.+ ..++.+-.....|.-+.|++.+..
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 555555543 4444433 234444444445666677766654
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=75.90 E-value=13 Score=29.69 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=56.1
Q ss_pred HHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448 4 QELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP 73 (151)
Q Consensus 4 ~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~ 73 (151)
.+.+..+ ++|..+ +-+..-+++|=.+|...-+.+..+++.-+.++.-++...|+.++..|++..+=++-.
T Consensus 74 ~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~ 153 (529)
T 1jdh_A 74 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh
Confidence 4555555 777764 223445666667777667889999999999988887888999999999998877744
Q ss_pred CCCchHHH
Q psy2448 74 PAGSELCE 81 (151)
Q Consensus 74 e~gs~L~E 81 (151)
.+....++
T Consensus 154 ~~~~~~~~ 161 (529)
T 1jdh_A 154 KTNVKFLA 161 (529)
T ss_dssp CCCHHHHH
T ss_pred cCCHHHHH
Confidence 44444433
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=75.87 E-value=13 Score=31.03 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=71.2
Q ss_pred hHHHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
...++..+ +||.+|.. .+.-++.|-.||.....+|.+.++.-++.+..++...+..++..|++..+-++
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 34566666 88877642 33446666677777778999999999999999999999999999999998777
Q ss_pred CCCCCchHHH-HHHH----hhcCChhhhhhccCCCccHHHHHHHh
Q psy2448 72 KPPAGSELCE-AVTM----INSYFPEDIVRYYSPRCTDHLLAKVD 111 (151)
Q Consensus 72 ~~e~gs~L~E-~I~~----IN~cfPeEIV~YYSPgY~e~LL~kld 111 (151)
-......++. ..-+ ..++=++.+......|.-+.|++-++
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 4333334332 2222 22334555444445555555555443
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=75.46 E-value=24 Score=28.81 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=73.9
Q ss_pred HHHHHHH-HHHHHHHHhc---------cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448 4 QELKSRN-SGLQISFLSN---------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP 73 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqKc---------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~ 73 (151)
.+++..+ .+|.++.... .-+++|-.+|...-+.+...++.-++.+.-.+......++..|++..|-++-.
T Consensus 217 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 217 LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 3455555 6666665442 23566777777777899999999999999888888889999999999988855
Q ss_pred CCCchHHH-HHHHhh---cCChhhhhhccCCCccHHHHHHHhh
Q psy2448 74 PAGSELCE-AVTMIN---SYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 74 e~gs~L~E-~I~~IN---~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
.....+++ .+..|. ...++.+-.....|.-+.|++-+..
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC
Confidence 54444433 333432 3334444455567777777777764
No 23
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=65.74 E-value=33 Score=28.64 Aligned_cols=108 Identities=13% Similarity=0.018 Sum_probs=70.4
Q ss_pred hHHHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448 3 PQELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 3 ~~DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei 71 (151)
..+++..+ +||.+|.. .+--++.|-.||...-+.|.+.++.=++.+.-++...+..++..|++..+-.+
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 34566667 88877753 23446667777777777899999999999999999999999999999988776
Q ss_pred CCCCCchHH-HHHHHh----hcCChhhhhhccCCCccHHHHHHH
Q psy2448 72 KPPAGSELC-EAVTMI----NSYFPEDIVRYYSPRCTDHLLAKV 110 (151)
Q Consensus 72 ~~e~gs~L~-E~I~~I----N~cfPeEIV~YYSPgY~e~LL~kl 110 (151)
-......++ +.+-+| .++=++.+...-.-|.-+.|++-+
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL 429 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 429 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh
Confidence 333333333 233222 223455444444445555554444
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=63.59 E-value=24 Score=30.09 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred HHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448 4 QELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP 73 (151)
Q Consensus 4 ~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~ 73 (151)
.+.+..+ ++|..+ +-++.-+++|-.+|...-+.+...++.-+.++.-++...|+.++..|++..+=++=.
T Consensus 71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~ 150 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHC
Confidence 4555555 667653 233445666666776667789999999999988888888999999999998877744
Q ss_pred CCCchHHHH----HHHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448 74 PAGSELCEA----VTMINSYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 74 e~gs~L~E~----I~~IN~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
.....++.. +..+-.-.++.-.....-|..+.|++-+..
T Consensus 151 ~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193 (644)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence 444444432 222322234433333333555555555543
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=60.81 E-value=37 Score=30.42 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=69.6
Q ss_pred HHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448 4 QELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP 73 (151)
Q Consensus 4 ~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~ 73 (151)
.+.|..+ ++|..+ |-+..-++.|=.+|...-+.+.+.++.-+..+.-++...|+.++..|++..+-++-.
T Consensus 207 ~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~ 286 (780)
T 2z6g_A 207 VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286 (780)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh
Confidence 3455556 777764 333445666666776667789999999999988888889999999999998887754
Q ss_pred CCCchHHHH----HHHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448 74 PAGSELCEA----VTMINSYFPEDIVRYYSPRCTDHLLAKVDQ 112 (151)
Q Consensus 74 e~gs~L~E~----I~~IN~cfPeEIV~YYSPgY~e~LL~kld~ 112 (151)
..+.++.+. +..+-.-.++........|..+.|++-+..
T Consensus 287 ~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 455454442 222221224444444445555666555543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=60.11 E-value=24 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHH
Q psy2448 20 NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCE 81 (151)
Q Consensus 20 ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E 81 (151)
+--++.|=.||......+.+..+.=++.+--.|.+.|+.++..|++..|.++-......+++
T Consensus 262 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 33455555566666778999999999999878999999999999999999996555555554
No 27
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=53.83 E-value=11 Score=24.43 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhhccC-ChhhH
Q psy2448 4 QELKSRNSGLQISFLSNVSFSFVDLLLYES-PPEIL 38 (151)
Q Consensus 4 ~DLk~K~rALK~IiqKct~l~ALEpLL~~a-P~~IL 38 (151)
++|..+.+.|..+|+.+..-..|+.++..+ |..|.
T Consensus 48 ~~L~~r~~~le~~l~~l~~~~~l~~~~~~~s~~~i~ 83 (89)
T 3coq_A 48 TEVESRLERLEQLFLLIFPREDLDMILKMDSLQDIK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchhhHHhhcCCCHHHHH
Confidence 567888888888888887777777777655 44443
No 28
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=53.31 E-value=29 Score=29.88 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHH
Q psy2448 20 NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCE 81 (151)
Q Consensus 20 ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E 81 (151)
+--++.|=.||......+.+.++.=++.+--.|.+.|..++..||+..|.++-......+++
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHH
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 34455555566666778999999999998878999999999999999999996555555544
No 29
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=48.63 E-value=9.4 Score=22.74 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q psy2448 3 PQELKSRNSGLQISFLSNV 21 (151)
Q Consensus 3 ~~DLk~K~rALK~IiqKct 21 (151)
-|-|.+||.||.+-+|.+.
T Consensus 3 wealekkcaalesklqale 21 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678999999998887654
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.61 E-value=12 Score=31.99 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=41.1
Q ss_pred hHHHHHHH-HHHHHHHHhcccc--chhhhh---hccC--C--hhhHHHHHHHHHhhcCCChHHhHHHHh
Q psy2448 3 PQELKSRN-SGLQISFLSNVSF--SFVDLL---LYES--P--PEILLPALKQLCKIFPVDLKARRVFVS 61 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKct~l--~ALEpL---L~~a--P--~~ILKyVl~QfsKvLP~D~kaRr~FVt 61 (151)
.++.+..+ .+|+.|+++...+ .++..| |.+- | -...-|++++|+..+++.++.-+.|+.
T Consensus 403 ~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~ 471 (591)
T 2vgl_B 403 VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLE 471 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHH
Confidence 34566777 8999999998775 233333 3321 2 366789999999999887777777754
No 31
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.05 E-value=59 Score=26.84 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=53.0
Q ss_pred HHHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448 4 QELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK 72 (151)
Q Consensus 4 ~DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~ 72 (151)
.+++..+ .+|..+.. +.--+|.|=.+|...-+.+....+.-+..+.-++++.|..++..||+..+=++=
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL 95 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 4555555 66665532 223345555666655668888888888888888899999999999999887773
Q ss_pred C-CCCchHHH
Q psy2448 73 P-PAGSELCE 81 (151)
Q Consensus 73 ~-e~gs~L~E 81 (151)
. .....+++
T Consensus 96 ~~~~~~~~~~ 105 (457)
T 1xm9_A 96 RRTGNAEIQK 105 (457)
T ss_dssp TTCCCHHHHH
T ss_pred hhCCCHHHHH
Confidence 3 43444433
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=33.48 E-value=1.1e+02 Score=27.51 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=50.4
Q ss_pred ChHHHHHHH-HHHHHHHHhcc--------ccchhhhhhccC--------ChhhHHHHHHHHHhhcCCChHHhHHHHhhhh
Q psy2448 2 PPQELKSRN-SGLQISFLSNV--------SFSFVDLLLYES--------PPEILLPALKQLCKIFPVDLKARRVFVSAGG 64 (151)
Q Consensus 2 ~~~DLk~K~-rALK~IiqKct--------~l~ALEpLL~~a--------P~~ILKyVl~QfsKvLP~D~kaRr~FVtSGG 64 (151)
++++++..+ .||.++-.... -++.|=.||..+ -.+++..++.-+..++..|+..++.++..||
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 345666666 88877643221 223333444433 1467888999999999999999999999999
Q ss_pred hHHHHhcC
Q psy2448 65 LKRVQALK 72 (151)
Q Consensus 65 LkklQei~ 72 (151)
+.+|-.|-
T Consensus 447 I~~Lv~LL 454 (584)
T 3l6x_A 447 IEKLVLIN 454 (584)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99988883
No 33
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=32.64 E-value=51 Score=22.78 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhhccC--ChhhHHHHHHHHHhhcCCCh
Q psy2448 4 QELKSRNSGLQISFLSNVSFSFVDLLLYES--PPEILLPALKQLCKIFPVDL 53 (151)
Q Consensus 4 ~DLk~K~rALK~IiqKct~l~ALEpLL~~a--P~~ILKyVl~QfsKvLP~D~ 53 (151)
++||...+.|+.-.+...-|..+-..+..+ +..+|..++..+.++++-|.
T Consensus 13 ~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~ 64 (184)
T 3p01_A 13 DLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNA 64 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCe
Confidence 567777677777666666666666556654 88999999999999987663
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=30.02 E-value=60 Score=30.47 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=55.6
Q ss_pred HHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHh-hhhhHHHHhcC
Q psy2448 5 ELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVS-AGGLKRVQALK 72 (151)
Q Consensus 5 DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVt-SGGLkklQei~ 72 (151)
.+++.+ ++|-+|.. .+.-++.|=.|+...-.++.+....=+|.+-..+...++.++. .||+..|.++-
T Consensus 638 ~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL 717 (810)
T 3now_A 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717 (810)
T ss_dssp THHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 455555 66555432 2334555556676667799999999999998878888888998 89999999996
Q ss_pred CCCCchHHH
Q psy2448 73 PPAGSELCE 81 (151)
Q Consensus 73 ~e~gs~L~E 81 (151)
.....++++
T Consensus 718 ~s~d~~vq~ 726 (810)
T 3now_A 718 ANPSPAVQH 726 (810)
T ss_dssp TCSSHHHHH
T ss_pred CCCCHHHHH
Confidence 555666554
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=29.48 E-value=1.1e+02 Score=28.59 Aligned_cols=56 Identities=5% Similarity=0.112 Sum_probs=44.9
Q ss_pred ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCC
Q psy2448 20 NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPA 75 (151)
Q Consensus 20 ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~ 75 (151)
.--++.|-.||...-.++.+..+.=++.++-++.+.++.++..||+..|+++-...
T Consensus 707 ~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence 33455666667777778888888888888888889999999999999999995443
No 36
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=29.43 E-value=8.5 Score=31.11 Aligned_cols=16 Identities=6% Similarity=0.308 Sum_probs=11.8
Q ss_pred HHhccccchhhhhhcc
Q psy2448 17 FLSNVSFSFVDLLLYE 32 (151)
Q Consensus 17 iqKct~l~ALEpLL~~ 32 (151)
|--|||+|-|.+.+.+
T Consensus 183 VLGCTh~pll~~~i~~ 198 (269)
T 3ist_A 183 ILGCTHYPLLKPIIEN 198 (269)
T ss_dssp EECSTTGGGGHHHHHH
T ss_pred EECCCCHHHHHHHHHH
Confidence 3448999988887654
No 37
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=28.36 E-value=61 Score=23.85 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=28.3
Q ss_pred HHHHHHHHhccc--cchhhhhhccCChhhHHHHHHHHHhhcCC
Q psy2448 11 SGLQISFLSNVS--FSFVDLLLYESPPEILLPALKQLCKIFPV 51 (151)
Q Consensus 11 rALK~IiqKct~--l~ALEpLL~~aP~~ILKyVl~QfsKvLP~ 51 (151)
+++|.+++.+.| |..+.++-+.+-++|.+|+..++++.||.
T Consensus 77 ~~~~~vi~~lDH~~Lndv~~~~~pTaEnlA~~i~~~L~~~lp~ 119 (138)
T 2oba_A 77 AIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPE 119 (138)
T ss_dssp HHHHHHHHHHTTSBGGGSTTCSSCCHHHHHHHHHHHHGGGCTT
T ss_pred HHHHHHHHhCCCccchhcCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 445556666544 44444444556789999999999999983
No 38
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=27.51 E-value=14 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.432 Sum_probs=29.8
Q ss_pred HHHhhhhhHHHHhcCCCCCchHHHHHHHhhcCChhhhhhccCCCccHHHHHHHhhc
Q psy2448 58 VFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQF 113 (151)
Q Consensus 58 ~FVtSGGLkklQei~~e~gs~L~E~I~~IN~cfPeEIV~YYSPgY~e~LL~kld~y 113 (151)
.||...+++.-.++.++ =+++|.||+-.|-+.|-+-+|+|
T Consensus 45 Afv~a~~~~~~~~~~~~----------------ke~~i~yf~~qyr~ML~~nlddy 84 (96)
T 2lyy_A 45 AWFGSTSFETKEQMQAK----------------KQEMMDYYMDRYKEMLDANMEDY 84 (96)
T ss_dssp GGGGGGTCSSHHHHHTT----------------HHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665555444433 26889999999999999999987
No 39
>2bez_F E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1
Probab=27.39 E-value=27 Score=22.14 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.0
Q ss_pred hHHHHHHHhhcCC
Q psy2448 78 ELCEAVTMINSYF 90 (151)
Q Consensus 78 ~L~E~I~~IN~cf 90 (151)
.|+++|+.||+.|
T Consensus 26 ~Lq~~I~~LN~tl 38 (42)
T 2bez_F 26 RLNEVAKNLNESL 38 (42)
T ss_dssp HHHHHHHHTSTTS
T ss_pred HHHHHHHHHHHhh
Confidence 3689999999876
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=25.97 E-value=1.6e+02 Score=25.41 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=44.0
Q ss_pred hHHHHHHH-HHHHHHHHhccc-----cchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHH
Q psy2448 3 PQELKSRN-SGLQISFLSNVS-----FSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVF 59 (151)
Q Consensus 3 ~~DLk~K~-rALK~IiqKct~-----l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~F 59 (151)
..-+|+++ .||-.|.+++.+ ++.|..+|.+.=+.++-.++.=+..+..+|++....|
T Consensus 155 ~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 34578888 999888887754 6778888888777888888888888888887654343
No 41
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=25.51 E-value=2.4e+02 Score=24.20 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHH-HHHHHHHHhcc--------ccchhhh---hhccC-Ch---hhHHH---HHHHHHhhcCCChHHhHHHHhhhh
Q psy2448 4 QELKSRN-SGLQISFLSNV--------SFSFVDL---LLYES-PP---EILLP---ALKQLCKIFPVDLKARRVFVSAGG 64 (151)
Q Consensus 4 ~DLk~K~-rALK~IiqKct--------~l~ALEp---LL~~a-P~---~ILKy---Vl~QfsKvLP~D~kaRr~FVtSGG 64 (151)
++++..+ +||.++-..|. .-.+|.+ ||... +. ++.+. +|..++..+..+.+.|..++..||
T Consensus 301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 4556655 77777765442 2234444 44433 32 47664 455666656678999999999999
Q ss_pred hHHHHhc-CCCCCchHHHHHHHh
Q psy2448 65 LKRVQAL-KPPAGSELCEAVTMI 86 (151)
Q Consensus 65 LkklQei-~~e~gs~L~E~I~~I 86 (151)
+..|=++ +.......++..-+|
T Consensus 381 i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 381 LQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHH
Confidence 9998776 433222334444444
No 42
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=24.74 E-value=60 Score=27.93 Aligned_cols=46 Identities=26% Similarity=0.235 Sum_probs=37.7
Q ss_pred CChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCch
Q psy2448 33 SPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSE 78 (151)
Q Consensus 33 aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~ 78 (151)
+-..-++-.|..+++++-.|..-=..||..+||..|=.+-.+....
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN 175 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHN 175 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChH
Confidence 4456689999999998889999899999999999998886554333
No 43
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=24.51 E-value=51 Score=23.80 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=31.8
Q ss_pred ChHHHHHHH----HHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHh
Q psy2448 2 PPQELKSRN----SGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCK 47 (151)
Q Consensus 2 ~~~DLk~K~----rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsK 47 (151)
|.++|..+. ||+.+|+.-..-+.--+.+...+...-+|-|+..+++
T Consensus 9 ~~~~ls~~~~d~~rai~aL~~EleAI~~Y~q~A~~t~D~evk~vl~~iad 58 (95)
T 1zpy_A 9 PTQELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRD 58 (95)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344444443 9999999777766666677777777777777777664
No 44
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.01 E-value=44 Score=27.12 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=20.1
Q ss_pred hcCChhhhh--hccCCC----ccHHHHHHHhh
Q psy2448 87 NSYFPEDIV--RYYSPR----CTDHLLAKVDQ 112 (151)
Q Consensus 87 N~cfPeEIV--~YYSPg----Y~e~LL~kld~ 112 (151)
-.++|+++. +||.|. |...+-++++.
T Consensus 160 Q~YlP~~l~~~~fY~p~~~~g~E~~i~~~l~~ 191 (204)
T 2r9g_A 160 QQYLPDKLKNAQYYQPKDTGKYEQALGQQYYR 191 (204)
T ss_dssp CCCSCGGGTTCCCCCCCCSSHHHHHHHHHHHH
T ss_pred CCcCCCcCCCCeeeccCCCCchHHHHHHHHHH
Confidence 468999997 799998 66677676653
No 45
>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}
Probab=21.50 E-value=55 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHhhcCCChHHhHH
Q psy2448 35 PEILLPALKQLCKIFPVDLKARRV 58 (151)
Q Consensus 35 ~~ILKyVl~QfsKvLP~D~kaRr~ 58 (151)
..|+.|+..++.+++|.|+..|..
T Consensus 73 ~aI~~yL~~~~~~l~p~~~~~~a~ 96 (215)
T 3gx0_A 73 GAILLYLAEKTGLFLSHETRERAA 96 (215)
T ss_dssp HHHHHHHHHHHSCSSCSSHHHHHH
T ss_pred HHHHHHHHHHccccCCCCHHHHHH
Confidence 479999999999899999877654
No 46
>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}
Probab=21.07 E-value=59 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHhhcCCChHHhHH
Q psy2448 34 PPEILLPALKQLCKIFPVDLKARRV 58 (151)
Q Consensus 34 P~~ILKyVl~QfsKvLP~D~kaRr~ 58 (151)
-..|+.|+..++.+++|.|+..|..
T Consensus 92 S~aI~~yL~~~~~~L~p~~~~~~a~ 116 (244)
T 4ikh_A 92 SGAILIYLADKSGQLLAQESAARYE 116 (244)
T ss_dssp HHHHHHHHHHHHTCSSCSSHHHHHH
T ss_pred HHHHHHHHHhhCCCcCCCCHHHHHH
Confidence 3479999999999999999987654
No 47
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=21.04 E-value=2.8e+02 Score=24.80 Aligned_cols=68 Identities=21% Similarity=0.109 Sum_probs=49.3
Q ss_pred HHHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCC-ChHHhHHHHhhhhhHHHHhc
Q psy2448 4 QELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPV-DLKARRVFVSAGGLKRVQAL 71 (151)
Q Consensus 4 ~DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~-D~kaRr~FVtSGGLkklQei 71 (151)
++++..+ .+|..+.. .+--+|.|=.||...-+++..+.+.-+..+.=+ |.+.|...+..||+..|=++
T Consensus 62 ~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~L 141 (584)
T 3l6x_A 62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHH
Confidence 4555555 66665543 233455555566555678999999999998875 69999999999999887666
No 48
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=20.96 E-value=53 Score=27.12 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=38.2
Q ss_pred CChHHHHHHH-HHHHHHHHhccccchhhh-hhccC-ChhhHHHHHHHHHhhcCC
Q psy2448 1 MPPQELKSRN-SGLQISFLSNVSFSFVDL-LLYES-PPEILLPALKQLCKIFPV 51 (151)
Q Consensus 1 ~~~~DLk~K~-rALK~IiqKct~l~ALEp-LL~~a-P~~ILKyVl~QfsKvLP~ 51 (151)
|+..||-.++ ..++.+++.+.....=.- ++.-+ |-+++-|++.+++..+|+
T Consensus 95 ~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~~~~~~p~ 148 (333)
T 5mdh_A 95 MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPK 148 (333)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHHHcCCCCc
Confidence 4567888888 999999998876643221 45545 999999999998866655
No 49
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=20.84 E-value=67 Score=23.24 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=30.5
Q ss_pred ChHHHHHH----HHHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHh
Q psy2448 2 PPQELKSR----NSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCK 47 (151)
Q Consensus 2 ~~~DLk~K----~rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsK 47 (151)
|.++|..+ .||+.+|+.-+..+.--+.+...++..-+|-|+.-+++
T Consensus 9 p~e~Ls~e~~d~~Rai~sl~~EleAI~~Y~q~a~~~~d~~~k~vl~~i~~ 58 (95)
T 3k6c_A 9 PTQELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRD 58 (95)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455444 39999999877766666666666677777766665543
No 50
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=20.78 E-value=74 Score=24.16 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=24.8
Q ss_pred hhhhhccCChhhHHHHHHHHHhhcCCChHHhHHH
Q psy2448 26 VDLLLYESPPEILLPALKQLCKIFPVDLKARRVF 59 (151)
Q Consensus 26 LEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~F 59 (151)
..+++...|..|++..+. -+||++.-+|+.|
T Consensus 87 ~~~~~~r~P~~ii~~aVr---GMLPk~~lgr~~l 117 (140)
T 3v2d_N 87 LEKMLATHPERVLEHAVK---GMLPKGPLGRRLF 117 (140)
T ss_dssp HHHHHHHCTHHHHHHHHH---HTSCSSHHHHHHH
T ss_pred HHHhhhhCHHHHHHHHHH---hcCCCChhHHHHH
Confidence 467888899999998876 5799987776654
No 51
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=20.58 E-value=17 Score=29.59 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=12.5
Q ss_pred HHHhccccchhhhhhcc
Q psy2448 16 SFLSNVSFSFVDLLLYE 32 (151)
Q Consensus 16 IiqKct~l~ALEpLL~~ 32 (151)
||-=|||+|-|.+.+.+
T Consensus 200 iILGCTh~PlL~~~i~~ 216 (274)
T 3uhf_A 200 LILACTHFPLLGRSLSK 216 (274)
T ss_dssp EEECSTTGGGGHHHHHH
T ss_pred EEECCCChHHHHHHHHH
Confidence 34459999988887764
No 52
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=20.36 E-value=82 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=24.9
Q ss_pred hhhhhccCChhhHHHHHHHHHhhcCCChHHhHHH
Q psy2448 26 VDLLLYESPPEILLPALKQLCKIFPVDLKARRVF 59 (151)
Q Consensus 26 LEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~F 59 (151)
..+++...|..|++..+. -+||++.-.|+.|
T Consensus 89 ~~~~~~r~P~~ii~~aVr---GMLPkn~lgr~~l 119 (142)
T 3r8s_J 89 FEEMIARRPERVIEIAVK---GMLPKGPLGRAMF 119 (142)
T ss_dssp HHHHHHHCSHHHHHHHHH---HHSCSSHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHH---hcCCCChhHHHHH
Confidence 367888899999998877 5699998777654
No 53
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.14 E-value=58 Score=26.34 Aligned_cols=27 Identities=26% Similarity=0.700 Sum_probs=21.5
Q ss_pred hcCChhhhh--hccCC---CccHHHHHHHhhc
Q psy2448 87 NSYFPEDIV--RYYSP---RCTDHLLAKVDQF 113 (151)
Q Consensus 87 N~cfPeEIV--~YYSP---gY~e~LL~kld~y 113 (151)
-.++|+++. +||.| ||...+-++++..
T Consensus 155 Q~YlP~~l~~~~fY~p~~~g~E~~i~~~l~~~ 186 (201)
T 3bge_A 155 ENYFPPELKDTQYYFPTNRGMEIQIKEKLERL 186 (201)
T ss_dssp CCSSCGGGTTCCCCCCCSSTTHHHHHHHHHHH
T ss_pred ccCCCccCCCCcccCCCCCchHHHHHHHHHHH
Confidence 479999997 79999 6777887777754
No 54
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.08 E-value=1e+02 Score=26.11 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=56.9
Q ss_pred HhccccchhhhhhccCChhhHHHHHHHHHh------hcCCChHHhHHHHhhhhh---------HHHHhcCCCCCchHHHH
Q psy2448 18 LSNVSFSFVDLLLYESPPEILLPALKQLCK------IFPVDLKARRVFVSAGGL---------KRVQALKPPAGSELCEA 82 (151)
Q Consensus 18 qKct~l~ALEpLL~~aP~~ILKyVl~QfsK------vLP~D~kaRr~FVtSGGL---------kklQei~~e~gs~L~E~ 82 (151)
.+-..|..||.+|.+ |..=|.-.|.+|-. -=|.|..+|..+++.+.- ..|++++......+...
T Consensus 23 ~~~~~l~~le~~~~~-~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~ 101 (463)
T 2d4y_A 23 TRYEQMSKIDNLLAD-KSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSS 101 (463)
T ss_dssp HHHHHHHHHHHHHHC-TTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888877 34545556665543 369999999999987642 46777777778888888
Q ss_pred HHHhhcCC------hhhhhhccC
Q psy2448 83 VTMINSYF------PEDIVRYYS 99 (151)
Q Consensus 83 I~~IN~cf------PeEIV~YYS 99 (151)
|+.||+.- =.+|++.-.
T Consensus 102 V~~iN~l~~qIa~LN~qI~~~~~ 124 (463)
T 2d4y_A 102 VAQINNYAKQIANLNDQISRMTG 124 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888763 457877643
Done!