RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2448
(151 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-05
Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 58/183 (31%)
Query: 3 PQELKSRNSGLQIS-------FLS--NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDL 53
P ++ + L + +L ++ + LL E+ L K+L K + +
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIH-ALAAKLLQENDTT--LVKTKELIKNY---I 127
Query: 54 KARRVFVSAGGLKRVQALKPPAGSELCEAVT--------------MINSYFPE--DIVRY 97
AR + KR + S L AV + YF E D+ +
Sbjct: 128 TARIM------AKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 98 YSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLGDEEGNW--------------SS 143
Y L+ + +F+ + LI D + G W S
Sbjct: 180 YHV-----LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 144 PIS 146
PIS
Sbjct: 235 PIS 237
Score = 30.4 bits (68), Expect = 0.26
Identities = 29/193 (15%), Positives = 47/193 (24%), Gaps = 91/193 (47%)
Query: 1 MPPQELKSRNSGLQI------------------SFLSNVSFSFVDLLLY------ESPPE 36
P EL+S G SF +V + +L + E+ P
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPN 316
Query: 37 ILLPALKQLCKIFPVDLKARRVFVSAG-----------GLKRVQALKPPAGSELCEAVTM 85
LP + L + Q + + V
Sbjct: 317 TSLPP------------SILEDSLENNEGVPSPMLSISNLTQEQ---------VQDYVNK 355
Query: 86 INSYFPED----IVRYYSPR---CT---------DHLLAKV------DQ----FT---PQ 116
NS+ P I + + + L K DQ F+ +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 117 VS---LPLITCAP 126
S LP + +P
Sbjct: 416 FSNRFLP-VA-SP 426
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 36.9 bits (85), Expect = 0.001
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 29 LLYESPPEILLPALKQLCKIFPVDLKARRV-----------FVSAGGLKRVQALKPPAGS 77
LL + I+ L L I + + AGG++++ +
Sbjct: 436 LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 495
Query: 78 ELCE-AVTMINSYFPED 93
++ E A +I +YF E+
Sbjct: 496 KIYEKAYKIIETYFGEE 512
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.078
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 31/143 (21%)
Query: 18 LSNVSFSFVDLLLYESPPEILLPALKQL---CKIFPVDLKARRVFVSAGGLKRVQALKPP 74
L+ + S +++L P E +++ +FP + L +
Sbjct: 355 LTTIIESSLNVL---EPAE-----YRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIK 401
Query: 75 AGSEL----CEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSL--PLITC--AP 126
+ + +++ E + S L K++ + +L ++ P
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLEN---EYALHRSIVDHYNIP 456
Query: 127 DT--PSDMSLGDEEGNWSSPISH 147
T D+ + + S I H
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGH 479
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.9
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 17/40 (42%)
Query: 4 QELKSRNSGLQISFLSNVSFSFVDLLLY--ESPPEILLPA 41
Q LK + L+ LY +S P + + A
Sbjct: 20 QALKKLQASLK---------------LYADDSAPALAIKA 44
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 26.8 bits (60), Expect = 2.9
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 17 FLSNVSFSFVDL-LLYESPPEILLPALKQLCKIF 49
+ SFS VDL L + P L+ + +
Sbjct: 152 LAKSASFSVVDLDLNLKLQPARYRQLLQHILQHV 185
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 25.7 bits (56), Expect = 7.0
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 25 FVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKR-VQALKPPAGSELCEAV 83
V LL P I+ PAL+ + I + + + AG L L P + EA
Sbjct: 279 LVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Query: 84 TMI 86
+
Sbjct: 338 WTM 340
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 4 QELKSRNSGLQISF-LSNVSFSF 25
++ G +S +SN+SFSF
Sbjct: 203 GWIRKNLPGAHVSGGVSNLSFSF 225
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 25.3 bits (56), Expect = 9.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 29 LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL 71
LL +IL AL L I + ++ AG L++++ L
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,334,556
Number of extensions: 130891
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 13
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)