RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2448
         (151 letters)



>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 29  LLYESPPEILLPALKQLCKIFPV---DLKARRVFVS--------AGGLKRVQALKPPAGS 77
           LL  +   I+   L  L  I  +   D +AR + ++        AGG++++   +     
Sbjct: 425 LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 484

Query: 78  ELCE-AVTMINSYFPED 93
           ++ E A  +I +YF E+
Sbjct: 485 KIYEKAYKIIETYFGEE 501


>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 386

 Score = 24.8 bits (53), Expect = 4.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 35 PEILLPALKQLCKIF 49
          PE L+  LK+L K +
Sbjct: 12 PETLIEPLKELEKAY 26


>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae
           [TaxId: 1313]}
          Length = 275

 Score = 24.4 bits (52), Expect = 5.9
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 82  AVTMINSYFPEDIVRYYSP 100
            + +I    P+   RY+ P
Sbjct: 15  LLPVIRELIPKTYNRYFEP 33


>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse
           (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
          Length = 68

 Score = 23.1 bits (50), Expect = 6.3
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 76  GSELCEAV--TMINSYFPEDIVRYYSPRCTDH 105
            S+  + V     N   P+ ++ +Y  R T H
Sbjct: 33  NSDEADLVPAKEANVKCPQVVISFYEERLTWH 64


>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 78

 Score = 23.1 bits (49), Expect = 8.0
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 78  ELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVD 111
           ++C  +    S   +++V  Y       LL +V 
Sbjct: 33  KMCSKLPKSLSEECQEVVDTYGSSILSILLEEVS 66


>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 457

 Score = 24.4 bits (51), Expect = 8.8
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 29 LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKR-VQALKPPAGSELCEAVTMI 86
           L     +        +      D  A++     GG+ + V  L+ P  +    A   +
Sbjct: 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGAL 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 569,837
Number of extensions: 25195
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 7
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)