Query psy245
Match_columns 566
No_of_seqs 469 out of 2712
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:36:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474|consensus 100.0 4.6E-46 1E-50 417.1 21.7 416 89-563 2-540 (640)
2 cd05497 Bromo_Brdt_I_like Brom 100.0 3.2E-28 7E-33 213.5 10.2 107 75-218 1-107 (107)
3 cd05497 Bromo_Brdt_I_like Brom 99.9 1E-26 2.2E-31 204.1 11.2 104 260-366 3-107 (107)
4 cd05495 Bromo_cbp_like Bromodo 99.9 3.4E-26 7.3E-31 201.2 11.1 104 260-366 2-106 (108)
5 cd05496 Bromo_WDR9_II Bromodom 99.9 2.8E-26 6E-31 204.5 10.5 105 260-369 4-109 (119)
6 KOG1474|consensus 99.9 7E-26 1.5E-30 254.5 15.0 221 77-336 220-451 (640)
7 cd05505 Bromo_WSTF_like Bromod 99.9 4.2E-26 9.1E-31 196.6 9.7 95 263-362 2-96 (97)
8 cd05499 Bromo_BDF1_2_II Bromod 99.9 4.7E-26 1E-30 198.6 10.1 101 263-363 2-102 (102)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 4.3E-26 9.4E-31 198.9 9.8 102 262-363 1-102 (102)
10 cd05504 Bromo_Acf1_like Bromod 99.9 1E-25 2.3E-30 200.2 11.6 109 254-367 5-113 (115)
11 cd05495 Bromo_cbp_like Bromodo 99.9 1.6E-25 3.4E-30 196.9 10.2 104 78-218 2-106 (108)
12 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.4E-25 5.1E-30 192.3 9.5 96 263-363 2-97 (97)
13 cd05496 Bromo_WDR9_II Bromodom 99.9 5E-25 1.1E-29 196.4 10.2 106 77-221 3-109 (119)
14 cd05506 Bromo_plant1 Bromodoma 99.9 5.9E-25 1.3E-29 190.7 10.0 98 263-363 2-99 (99)
15 cd05510 Bromo_SPT7_like Bromod 99.9 1.2E-24 2.7E-29 192.1 11.6 107 258-368 4-111 (112)
16 cd05501 Bromo_SP100C_like Brom 99.9 1.1E-24 2.3E-29 188.2 10.7 98 261-366 2-99 (102)
17 cd05502 Bromo_tif1_like Bromod 99.9 1.5E-24 3.2E-29 191.3 11.2 103 260-368 3-108 (109)
18 cd05507 Bromo_brd8_like Bromod 99.9 1.6E-24 3.5E-29 189.4 10.8 100 261-365 3-102 (104)
19 cd05508 Bromo_RACK7 Bromodomai 99.9 1.4E-24 3E-29 187.6 9.4 98 78-215 2-99 (99)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.1E-24 4.6E-29 188.4 10.4 100 260-362 3-102 (103)
21 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.8E-24 4E-29 189.9 9.7 103 262-366 2-107 (107)
22 cd05505 Bromo_WSTF_like Bromod 99.9 2.1E-24 4.4E-29 186.1 9.2 95 82-215 3-97 (97)
23 cd05507 Bromo_brd8_like Bromod 99.9 3.1E-24 6.7E-29 187.6 9.7 102 78-218 2-103 (104)
24 cd05509 Bromo_gcn5_like Bromod 99.9 9.2E-24 2E-28 183.9 10.6 99 263-366 3-101 (101)
25 cd05508 Bromo_RACK7 Bromodomai 99.9 1.3E-23 2.8E-28 181.6 10.1 93 264-362 6-98 (99)
26 COG5076 Transcription factor i 99.9 9.5E-24 2.1E-28 224.5 10.2 203 131-366 161-363 (371)
27 cd05510 Bromo_SPT7_like Bromod 99.9 1.8E-23 3.8E-28 184.8 9.7 104 77-219 5-110 (112)
28 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2E-23 4.3E-28 182.3 9.9 100 79-215 4-103 (103)
29 cd05506 Bromo_plant1 Bromodoma 99.9 1.9E-23 4.2E-28 181.2 8.8 98 81-215 2-99 (99)
30 cd05528 Bromo_AAA Bromodomain; 99.9 4.6E-23 9.9E-28 182.2 11.2 102 262-368 4-109 (112)
31 cd05504 Bromo_Acf1_like Bromod 99.9 2.7E-23 5.8E-28 184.8 9.7 102 79-219 12-113 (115)
32 cd05519 Bromo_SNF2 Bromodomain 99.9 2.8E-23 6.1E-28 181.4 9.4 99 263-363 2-103 (103)
33 cd05515 Bromo_polybromo_V Brom 99.9 3.6E-23 7.8E-28 181.2 9.9 100 263-364 2-104 (105)
34 cd05509 Bromo_gcn5_like Bromod 99.9 3.3E-23 7.3E-28 180.3 9.4 100 80-218 2-101 (101)
35 cd05524 Bromo_polybromo_I Brom 99.9 3.5E-23 7.6E-28 183.4 9.6 103 263-367 4-109 (113)
36 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.8E-23 6E-28 179.4 8.7 94 83-215 4-97 (97)
37 cd05502 Bromo_tif1_like Bromod 99.9 6.8E-23 1.5E-27 180.8 10.6 102 78-219 3-107 (109)
38 cd05516 Bromo_SNF2L2 Bromodoma 99.9 4.4E-23 9.4E-28 181.2 9.2 106 80-218 2-107 (107)
39 cd05511 Bromo_TFIID Bromodomai 99.9 3.7E-23 8E-28 183.1 8.7 102 80-220 1-102 (112)
40 cd05498 Bromo_Brdt_II_like Bro 99.9 5E-23 1.1E-27 179.6 9.3 97 82-215 3-102 (102)
41 cd05528 Bromo_AAA Bromodomain; 99.9 6.7E-23 1.5E-27 181.2 9.7 103 79-220 3-109 (112)
42 cd05520 Bromo_polybromo_III Br 99.9 6.7E-23 1.5E-27 178.7 9.5 93 268-362 7-102 (103)
43 cd05513 Bromo_brd7_like Bromod 99.9 6.9E-23 1.5E-27 176.7 9.4 92 263-359 3-94 (98)
44 cd05499 Bromo_BDF1_2_II Bromod 99.9 6.3E-23 1.4E-27 178.9 8.9 97 82-215 3-102 (102)
45 cd05513 Bromo_brd7_like Bromod 99.9 6.1E-23 1.3E-27 177.1 8.6 95 80-213 2-96 (98)
46 cd05517 Bromo_polybromo_II Bro 99.9 5.8E-23 1.3E-27 179.1 8.6 100 81-213 2-101 (103)
47 cd05518 Bromo_polybromo_IV Bro 99.9 7.6E-23 1.7E-27 178.2 9.2 97 264-362 3-102 (103)
48 cd05525 Bromo_ASH1 Bromodomain 99.9 8.4E-23 1.8E-27 178.8 9.5 103 79-214 2-104 (106)
49 cd05517 Bromo_polybromo_II Bro 99.9 8.2E-23 1.8E-27 178.1 9.1 98 263-362 2-102 (103)
50 cd05512 Bromo_brd1_like Bromod 99.9 8.9E-23 1.9E-27 176.3 9.2 90 264-358 4-93 (98)
51 cd05524 Bromo_polybromo_I Brom 99.9 1.4E-22 2.9E-27 179.7 9.8 106 82-220 5-110 (113)
52 cd05525 Bromo_ASH1 Bromodomain 99.9 1.8E-22 3.8E-27 176.8 10.4 97 264-362 5-104 (106)
53 cd05501 Bromo_SP100C_like Brom 99.9 2E-22 4.4E-27 174.0 10.2 97 79-218 3-99 (102)
54 cd05511 Bromo_TFIID Bromodomai 99.9 1.2E-22 2.5E-27 179.9 8.8 99 266-369 5-103 (112)
55 cd05512 Bromo_brd1_like Bromod 99.9 1.2E-22 2.6E-27 175.5 8.6 93 80-211 2-94 (98)
56 cd05529 Bromo_WDR9_I_like Brom 99.9 7E-22 1.5E-26 179.0 11.6 105 260-365 23-127 (128)
57 cd05518 Bromo_polybromo_IV Bro 99.9 2.7E-22 6E-27 174.7 8.5 83 132-214 20-102 (103)
58 cd05520 Bromo_polybromo_III Br 99.9 2.6E-22 5.7E-27 175.0 8.4 83 132-214 20-102 (103)
59 cd05519 Bromo_SNF2 Bromodomain 99.9 3.8E-22 8.2E-27 174.3 8.9 103 80-215 1-103 (103)
60 cd05515 Bromo_polybromo_V Brom 99.9 3.7E-22 8E-27 174.8 8.6 103 81-216 2-104 (105)
61 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 9.9E-22 2.2E-26 171.9 8.7 102 80-216 2-103 (106)
62 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2E-21 4.4E-26 169.8 10.1 98 263-362 6-103 (104)
63 KOG1472|consensus 99.9 1.3E-21 2.9E-26 216.0 11.0 98 265-367 610-707 (720)
64 cd05529 Bromo_WDR9_I_like Brom 99.8 4.8E-21 1E-25 173.5 11.3 106 74-217 19-127 (128)
65 smart00297 BROMO bromo domain. 99.8 4.2E-21 9.2E-26 168.4 10.6 101 261-366 7-107 (107)
66 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 6.9E-21 1.5E-25 166.6 10.0 97 264-364 4-103 (106)
67 smart00297 BROMO bromo domain. 99.8 1.3E-20 2.9E-25 165.2 9.6 102 77-217 5-106 (107)
68 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.3E-20 2.7E-25 164.8 8.8 100 82-214 4-103 (104)
69 cd05492 Bromo_ZMYND11 Bromodom 99.8 6.3E-20 1.4E-24 160.7 8.9 105 81-219 2-107 (109)
70 PF00439 Bromodomain: Bromodom 99.8 5.1E-20 1.1E-24 154.4 7.9 84 266-354 1-84 (84)
71 cd04369 Bromodomain Bromodomai 99.8 7.1E-20 1.5E-24 156.9 8.9 97 264-363 3-99 (99)
72 KOG0008|consensus 99.8 2.1E-19 4.6E-24 204.5 13.2 217 79-361 1261-1477(1563)
73 cd05526 Bromo_polybromo_VI Bro 99.8 1.8E-19 3.8E-24 157.5 9.6 105 79-218 3-107 (110)
74 cd05492 Bromo_ZMYND11 Bromodom 99.8 2.8E-19 6E-24 156.7 8.1 85 282-366 19-106 (109)
75 PF00439 Bromodomain: Bromodom 99.8 5.7E-19 1.2E-23 148.0 6.9 84 84-206 1-84 (84)
76 cd04369 Bromodomain Bromodomai 99.8 8.2E-19 1.8E-23 150.2 7.9 95 82-215 3-99 (99)
77 cd05526 Bromo_polybromo_VI Bro 99.7 6.4E-18 1.4E-22 147.7 9.5 101 263-367 5-108 (110)
78 COG5076 Transcription factor i 99.7 2E-17 4.4E-22 176.0 8.3 206 150-370 47-252 (371)
79 KOG1245|consensus 99.6 1.7E-16 3.6E-21 189.2 7.4 96 266-367 1306-1401(1404)
80 KOG1245|consensus 99.6 1.3E-15 2.7E-20 181.8 6.4 95 84-218 1306-1400(1404)
81 KOG1827|consensus 99.4 2.7E-13 5.9E-18 148.4 8.5 232 113-359 52-288 (629)
82 KOG0008|consensus 99.4 1.7E-13 3.8E-18 156.9 3.6 167 82-343 1385-1551(1563)
83 KOG1472|consensus 99.4 3.6E-13 7.7E-18 149.7 5.2 105 77-220 604-708 (720)
84 KOG1828|consensus 99.3 6.4E-13 1.4E-17 136.1 3.3 203 149-357 50-298 (418)
85 cd05494 Bromodomain_1 Bromodom 99.3 3.5E-12 7.5E-17 113.3 4.2 80 266-345 5-91 (114)
86 KOG1827|consensus 99.2 5.7E-11 1.2E-15 130.4 8.2 151 180-364 3-156 (629)
87 cd05494 Bromodomain_1 Bromodom 99.1 3.9E-11 8.5E-16 106.5 5.0 79 79-195 4-89 (114)
88 KOG0386|consensus 99.1 1.9E-10 4.2E-15 129.8 8.7 106 82-220 1027-1132(1157)
89 cd05491 Bromo_TBP7_like Bromod 98.9 4.4E-10 9.5E-15 98.8 3.2 41 305-345 63-103 (119)
90 cd05491 Bromo_TBP7_like Bromod 98.9 1.1E-09 2.4E-14 96.3 4.8 40 157-196 63-102 (119)
91 KOG0955|consensus 98.8 4.7E-09 1E-13 121.9 7.0 105 261-370 565-669 (1051)
92 KOG0386|consensus 98.7 1.6E-08 3.4E-13 114.8 6.8 102 264-367 1027-1131(1157)
93 KOG0955|consensus 98.7 1.3E-08 2.8E-13 118.3 6.2 106 76-220 562-667 (1051)
94 KOG1828|consensus 97.7 1.5E-05 3.3E-10 82.6 2.1 73 136-209 226-298 (418)
95 cd05493 Bromo_ALL-1 Bromodomai 96.0 0.009 2E-07 54.1 4.4 66 306-371 59-124 (131)
96 cd05493 Bromo_ALL-1 Bromodomai 94.9 0.028 6.1E-07 51.0 3.9 61 158-218 59-119 (131)
97 KOG0732|consensus 92.1 0.19 4.1E-06 59.7 5.2 50 148-197 550-601 (1080)
98 KOG0644|consensus 89.3 0.31 6.8E-06 55.8 3.5 61 155-215 1050-1110(1113)
99 KOG0644|consensus 87.4 0.42 9E-06 54.9 3.0 61 303-363 1050-1110(1113)
100 KOG0732|consensus 76.5 1.1 2.5E-05 53.4 1.2 63 283-345 534-601 (1080)
101 TIGR02606 antidote_CC2985 puta 41.5 35 0.00076 27.5 3.5 27 310-336 12-38 (69)
102 PF14372 DUF4413: Domain of un 37.2 72 0.0016 27.5 5.1 50 318-367 3-52 (101)
103 TIGR02606 antidote_CC2985 puta 36.8 45 0.00098 26.8 3.5 27 162-188 12-38 (69)
104 PF03693 RHH_2: Uncharacterise 25.5 76 0.0017 26.3 3.1 27 162-188 15-41 (80)
105 PF14933 CEP19: CEP19-like pro 25.0 1.1E+02 0.0024 28.8 4.5 66 501-566 54-137 (159)
106 PF03693 RHH_2: Uncharacterise 24.9 89 0.0019 25.9 3.4 27 310-336 15-41 (80)
107 PF14372 DUF4413: Domain of un 22.6 1.8E+02 0.0039 25.0 5.0 49 171-219 4-52 (101)
108 PF10491 Nrf1_DNA-bind: NLS-bi 20.2 53 0.0012 32.2 1.3 66 131-197 133-205 (214)
No 1
>KOG1474|consensus
Probab=100.00 E-value=4.6e-46 Score=417.10 Aligned_cols=416 Identities=39% Similarity=0.591 Sum_probs=275.0
Q ss_pred HHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCHHHHHHHh
Q psy245 89 KPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRL 168 (566)
Q Consensus 89 ~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL 168 (566)
+.+++|.++|+|..||+.+.+++| +||.+|++|||++||+.++
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~-------------------------------------~~~~~~~~~~d~~~~~~~~ 44 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLP-------------------------------------AYYEIIKRPMDIGTIEKRV 44 (640)
T ss_pred cccccccccccccCccchhhccch-------------------------------------hhhcccCCCCCchhhhhhh
Confidence 346789999999999999999999 9999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcccc-------ccccCC-------------
Q psy245 169 ENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESG-------RQIKKP------------- 228 (566)
Q Consensus 169 ~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~-------~k~~~~------------- 228 (566)
.+.+|.+..++.+|+..+|.||+.||.....|+.+++.++..|.+.+..++... .+....
T Consensus 45 e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 124 (640)
T KOG1474|consen 45 ENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKL 124 (640)
T ss_pred ccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhh
Confidence 999999999999999999999999999999999999999999988877766410 000000
Q ss_pred ---C-----------CCCC---C-----C-Cccc-------------cccccc----------CC-------CC------
Q psy245 229 ---N-----------RGSD---E-----G-SFTT-------------QLATSV----------TS-------VG------ 249 (566)
Q Consensus 229 ---~-----------~~~~---~-----~-~~~~-------------~~~~~~----------~~-------~~------ 249 (566)
. .... . + .... ...... ++ ..
T Consensus 125 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (640)
T KOG1474|consen 125 SERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAPNSSRES 204 (640)
T ss_pred hhccccccccCCcccccccccccccccCCCCCcccccccccchhhhhccccccccccCcCCCCccccccccccCcccccc
Confidence 0 0000 0 0 0000 000000 00 00
Q ss_pred ------CCCCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCC
Q psy245 250 ------DQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKS 323 (566)
Q Consensus 250 ------~~~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s 323 (566)
.........+..+|++|..||+.|+.|+ ++|||+.|||++.|++||||+||++||||+||+.||.+|.|.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k---~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~ 281 (640)
T KOG1474|consen 205 GDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHK---HAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKS 281 (640)
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHhcc---CCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCC
Confidence 0111234467889999999999999999 5699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCcc--------c---ccCCCCCCC
Q psy245 324 SKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTL--------T---VNKNNIGRW 392 (566)
Q Consensus 324 ~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~s 392 (566)
+.+|.+||||||+||++||++|++||.||..|+++|+.+|+.++.............+. . ......+..
T Consensus 282 ~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (640)
T KOG1474|consen 282 AEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFE 361 (640)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccch
Confidence 99999999999999999999999999999999999999999988776544322111100 0 000111101
Q ss_pred CCCCCC--CCCCchHHHHHHHHHHHhhhcCCCcchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy245 393 SPDSSS--DSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSV 470 (566)
Q Consensus 393 ~~~~~~--~~~~~~~~e~~~~l~~lq~ql~~~~~k~~~~kk~~~~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~ 470 (566)
..+... ......++++....+.++..+...+............ .++...............+. .....+
T Consensus 362 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~-------~~~~~~ 432 (640)
T KOG1474|consen 362 SRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVS--KPPRKIEEELESDKRPLVTG-------KLIKEK 432 (640)
T ss_pred hcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhcccc--Cccccccccccccccccchh-------hhhhhh
Confidence 111111 1234556667777777776665543322221110000 00000000000000000000 000000
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhccC-CCCcchHHHHHHH--HhhCCCCCCCCCCcEEEeCCCCC----
Q psy245 471 SAQHTQPAPVMNDESDEESSKPMSYFEKQELSLDINK-LPGKKLGRVVHII--QSREPSLRDSNPDEIEIDFETLK---- 543 (566)
Q Consensus 471 ~~~~~~~~~~~~~s~~e~~~~pmT~eEK~~Ls~~I~~-Lp~e~L~~Vv~II--~~~~p~~~~~~~dEiEiDid~L~---- 543 (566)
...........+.||..|+..|...+.. +++.+|..+++|+ ..+.+.+. .++++|++|++.++
T Consensus 433 ---------~~~~~~~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~vd~~~~ 502 (640)
T KOG1474|consen 433 ---------NKKEKAANENKRDMTAPEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLS-QNDDEIELDLDSVDGSQS 502 (640)
T ss_pred ---------hccccccccccccccccccccchhhccCCCCCccccCcccccchhhhccccc-ccccchhhcccccccccc
Confidence 0001112345678888888888888888 4888888888888 33455553 35678888888877
Q ss_pred ---------hHHHH---------HHHHHHHHHhccCCC
Q psy245 544 ---------PSTLR---------ELEKYVATCLRKKPR 563 (566)
Q Consensus 544 ---------~~tLr---------~L~~yV~~cL~kk~~ 563 (566)
..|+| ++..++..|++...+
T Consensus 503 ~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~ 540 (640)
T KOG1474|consen 503 REPSSNPLEIETIRETLKLSTERELELSKASSSRSLMR 540 (640)
T ss_pred cCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhcc
Confidence 55554 555566667666544
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.2e-28 Score=213.51 Aligned_cols=107 Identities=73% Similarity=1.228 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccccc
Q psy245 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKV 154 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~i 154 (566)
|+|+|++++++.|++.|++|+.+|||..|||....++| |||++
T Consensus 1 ~~~~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~p-------------------------------------dY~~i 43 (107)
T cd05497 1 RHTNQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLP-------------------------------------DYHKI 43 (107)
T ss_pred CccHHHHHHHHHHHHHHHhCCcCccccCCCCcccccCC-------------------------------------cHHHH
Confidence 57999999999999999999999999999998877777 99999
Q ss_pred CCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 155 IKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 155 Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
|++||||+||++||++|.|.++.+|..||+|||.||+.||+++|.++.+|..|++.|++.+.++
T Consensus 44 Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 44 IKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1e-26 Score=204.07 Aligned_cols=104 Identities=49% Similarity=0.862 Sum_probs=97.1
Q ss_pred HHHHHHHH-HHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Q psy245 260 TESLKYCN-EILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 260 ~~~~k~c~-~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 338 (566)
+.+++.|. .||..|++++ .+|||.+|||+...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 3 ~~q~~~~~~~il~~l~~~~---~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05497 3 TNQLQYLLKVVLKALWKHK---FAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNC 79 (107)
T ss_pred cHHHHHHHHHHHHHHHhCC---cCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45677774 6799999887 7899999999987789999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 339 YKYNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 339 ~~yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
+.||+++|.|+.+|..|+++|++++++|
T Consensus 80 ~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 80 YIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.4e-26 Score=201.17 Aligned_cols=104 Identities=36% Similarity=0.645 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHhc-cCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Q psy245 260 TESLKYCNEILKELFSK-KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~-~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 338 (566)
.++.+.|..+|..|+++ + .+|||.+|||+...++||||++|++||||+||++||++|.|.++.+|.+||+|||+||
T Consensus 2 ~~l~~~~~~il~~l~~~~~---~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQDP---ESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHcCc---ccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 36788999999999988 5 7889999999998889999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 339 YKYNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 339 ~~yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
+.||+++|.+|.+|..|+++|+++++.+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 5
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.8e-26 Score=204.47 Aligned_cols=105 Identities=38% Similarity=0.648 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
.+|.+.|..||..|++++ .+|||.+|||+. ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 4 ~~w~~~c~~il~~l~~~~---~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~ 78 (119)
T cd05496 4 SDWKKQCKELVNLMWDCE---DSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSK 78 (119)
T ss_pred HHHHHHHHHHHHHHHhCC---ccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999987 678999999987 699999999999999999999999999999999999999999999
Q ss_pred ccCCC-CCHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 340 KYNPP-DHDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 340 ~yN~~-~s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
.||++ +|.||.+|..|+++|++++.++...
T Consensus 79 ~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 79 SYTPNKRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 8999999999999999999988543
No 6
>KOG1474|consensus
Probab=99.93 E-value=7e-26 Score=254.55 Aligned_cols=221 Identities=30% Similarity=0.390 Sum_probs=155.6
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCC
Q psy245 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIK 156 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk 156 (566)
+..+-+.|..||..||.|+++|||..|||.+.+++| |||+||+
T Consensus 220 ~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLp-------------------------------------DY~~IIK 262 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLP-------------------------------------DYHDIIK 262 (640)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCc-------------------------------------chhhhcC
Confidence 345555677899999999999999999999999999 9999999
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCC----CCCC
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKP----NRGS 232 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~----~~~~ 232 (566)
+||||+||++||.++.|+++.+|..||+|||.||++||.++++||.||..|++.|+.+|..++......... .+..
T Consensus 263 ~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~ 342 (640)
T KOG1474|consen 263 HPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMA 342 (640)
T ss_pred CCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999987632111110 0000
Q ss_pred ----CCCCccc---ccccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccC
Q psy245 233 ----DEGSFTT---QLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKK 305 (566)
Q Consensus 233 ----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~ 305 (566)
..+.... .+..... .............+....+..++..+....+..+...+..++.........+..+..+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~ 421 (640)
T KOG1474|consen 343 SSDQIPSNSVEGPRSSSFESR-ESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKR 421 (640)
T ss_pred cccccccccccCcccccchhc-ccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCcccccccccccccc
Confidence 0000000 0000000 0000002222334455666666666665555556667777887776677788999899
Q ss_pred CCChHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 306 PMDLGTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 306 PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
++..+ ...+..............++.....
T Consensus 422 ~~~~~-~~~~~~~~~~~~~~~~~r~~t~~~~ 451 (640)
T KOG1474|consen 422 PLVTG-KLIKEKNKKEKAANENKRDMTAPEK 451 (640)
T ss_pred ccchh-hhhhhhhcccccccccccccccccc
Confidence 98776 4444445555555555555554443
No 7
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.2e-26 Score=196.55 Aligned_cols=95 Identities=35% Similarity=0.684 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
++.|.+||+.|++++ .+|||..||+.. ++||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~---~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05505 2 LQKCEEILSKILKYR---FSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYY 76 (97)
T ss_pred HHHHHHHHHHHHhCC---CcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999887 678999999987 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~ 362 (566)
++||.|+.+|..|++.|..+
T Consensus 77 ~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 77 ENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 8
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.7e-26 Score=198.60 Aligned_cols=101 Identities=53% Similarity=1.012 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
++.|.+||..|+++++..++|||..|||+...++|+||++|++||||++|++||++|.|+++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999998877799999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~~ 363 (566)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999986
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.3e-26 Score=198.86 Aligned_cols=102 Identities=71% Similarity=1.246 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccccc
Q psy245 262 SLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKY 341 (566)
Q Consensus 262 ~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~y 341 (566)
+++.|.+||+.|+++++..+++||..||++...++|+||++|++||||+||++||++|.|.|+.+|..||+|||+||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 1 QLKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred ChhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999987789999999999987789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy245 342 NPPDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 342 N~~~s~v~~~A~~L~~~fe~~~ 363 (566)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987
No 10
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1e-25 Score=200.17 Aligned_cols=109 Identities=38% Similarity=0.692 Sum_probs=102.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHH
Q psy245 254 YAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRL 333 (566)
Q Consensus 254 ~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~L 333 (566)
..+..+..++..|..||..|+.++ .+|+|..||+.. ++||||++|++||||+||++||+.|.|.|+.+|.+||+|
T Consensus 5 ~~~~~~~~~~~~c~~il~~l~~~~---~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 5 EGRHHGPLNLSALEQLLVEIVKHK---DSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCC---CchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 345567789999999999999876 688999999986 689999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 334 IFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 334 if~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
||.||+.||+++|.++.+|..|+++|+++++++.
T Consensus 80 I~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 80 VFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 11
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.6e-25 Score=196.93 Aligned_cols=104 Identities=30% Similarity=0.527 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCC
Q psy245 78 NQLAFISKNVLKPVMKH-QHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIK 156 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~-~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk 156 (566)
.+|+..|..|++.|+++ +.+|||..||++...++| |||++|+
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~p-------------------------------------dY~~iIk 44 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIP-------------------------------------DYFDIVK 44 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCC-------------------------------------cHHHHhC
Confidence 57888999999999999 999999999998877778 9999999
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
+||||+||++||.+|.|.++.+|..||+|||.||+.||+++|.++.+|..|++.|++.+..+
T Consensus 45 ~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 45 NPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998754
No 12
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.4e-25 Score=192.32 Aligned_cols=96 Identities=40% Similarity=0.799 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
+.+|..||..|+++. .+++|+.||+.. .+|+||++|++||||+||++||++|.|+|+.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~---~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 2 LALCETILDEMEAHE---DAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHHHcCC---CchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999986 678999999987 689999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~~ 363 (566)
+++|.++.+|..|+++|+++|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 13
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5e-25 Score=196.44 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCC
Q psy245 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIK 156 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk 156 (566)
...|+..|..|++.|++|+.+|||..|||.. ++| |||++|+
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~p-------------------------------------dY~~iIk 43 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYP-------------------------------------DYRDIID 43 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChh--hcC-------------------------------------cHHHHhC
Confidence 4689999999999999999999999999964 366 9999999
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCC-CCHHHHHHHHHHHHHHHHhhhhccc
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP-GEDVVVMAQTLEKLFLTKVSARRES 221 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~-~s~i~~~A~~L~~~f~~~~~~~~~~ 221 (566)
+||||+||++||.+|.|.++.+|..||+|||.||++||++ +|.|+.+|..|++.|++.+.++...
T Consensus 44 ~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 44 TPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999985 8999999999999999999998763
No 14
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.9e-25 Score=190.65 Aligned_cols=98 Identities=54% Similarity=0.957 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
++.|..||+.|++++ .+|+|..||++...++|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~---~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn 78 (99)
T cd05506 2 MKQCGTLLRKLMKHK---WGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYN 78 (99)
T ss_pred HHHHHHHHHHHHhCC---CCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 688999999999987 67899999998877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~~ 363 (566)
+++|.++.+|..|++.|+++|
T Consensus 79 ~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 79 PPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.2e-24 Score=192.12 Aligned_cols=107 Identities=35% Similarity=0.511 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
...+....|..||..|+++. ..+|||..||++. ++||||++|++||||+||++||++|.|+|+.+|.+||+|||.|
T Consensus 4 ~~~~~~~~~~~il~~l~~~~--~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N 79 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYT--EHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKN 79 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcC--ccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34577889999999999984 2678999999987 6999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-HHHHHHHHHHHHHHHHHHcCCC
Q psy245 338 CYKYNPPDH-DVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 338 a~~yN~~~s-~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
|+.||++++ .++.+|..|++.|+.++..+++
T Consensus 80 ~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 80 CLLYNSDPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999876 6789999999999999998864
No 16
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=188.19 Aligned_cols=98 Identities=29% Similarity=0.444 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
+.++.|..||.+|+++.+ +++|..++ . ++||||++|++||||+||++||.+|+|.|+.+|.+||+|||+||+.
T Consensus 2 ~~l~~ce~il~~l~~~~~---s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~ 74 (102)
T cd05501 2 EELLKCEFLLLKVYCMSK---SGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKL 74 (102)
T ss_pred HHHHHHHHHHHHHHhCcc---cccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999984 46786533 2 6899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
||+++ .++.+|..|++.|+++|+++
T Consensus 75 yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 75 FYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999875
No 17
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.5e-24 Score=191.34 Aligned_cols=103 Identities=36% Similarity=0.717 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhC---CCCCCHHHHHHHHHHHHh
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA---REYKSSKEFADDVRLIFT 336 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~ef~~Dv~Lif~ 336 (566)
..+++.|.+||.+|+++. .+|||.+||++ .+|+||++|++||||+||++||+. |.|+++++|.+||+|||+
T Consensus 3 ~~~~~~c~~il~~l~~~~---~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~ 76 (109)
T cd05502 3 PIDQRKCERLLLELYCHE---LSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFK 76 (109)
T ss_pred HHHHHHHHHHHHHHHhCC---CChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 467899999999999985 78999999998 489999999999999999999998 699999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 337 NCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 337 Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
||+.||+++|.++.+|..|++.|+++|.++.+
T Consensus 77 Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 77 NCYKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999998643
No 18
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.6e-24 Score=189.36 Aligned_cols=100 Identities=35% Similarity=0.526 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
.|.+.|..+++.|..++ .++||.+||+.. ++|+||++|++||||+||++||++|.|.++.+|.+||+|||+||+.
T Consensus 3 ~~~~~~~~il~~l~~~~---~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 77 (104)
T cd05507 3 AWKKAILLVYRTLASHR---YASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIM 77 (104)
T ss_pred HHHHHHHHHHHHHHcCC---CCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999987 678999999986 6899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHc
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAK 365 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~ 365 (566)
||+++|.|+.+|..|++.|.+++..
T Consensus 78 yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 78 YNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988765
No 19
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.4e-24 Score=187.64 Aligned_cols=98 Identities=28% Similarity=0.426 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
++|+.+|+.+++.++ |+.+|||..||+.. ++| |||.+|++
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~p-------------------------------------dY~~iIk~ 41 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFP-------------------------------------DYAQYVFK 41 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCC-------------------------------------CHHHHcCC
Confidence 689999999999999 99999999999963 456 99999999
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
||||+||++||++|.|.++++|.+||+|||.||++||+++|.++.+|+.|.+.|...+
T Consensus 42 PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 42 PMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999998653
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.1e-24 Score=188.43 Aligned_cols=100 Identities=40% Similarity=0.670 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
..+.++|.++|..|+.++ .++||..|||+...++|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+
T Consensus 3 ~~~~~~~~~ii~~l~~~~---~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLK---DARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCL 79 (103)
T ss_pred HHHHHHHHHHHHHHHcCC---CChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999887 67899999999878899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~ 362 (566)
.||+++|.++.+|..|++.|++.
T Consensus 80 ~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 80 TFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999975
No 21
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.8e-24 Score=189.95 Aligned_cols=103 Identities=26% Similarity=0.380 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhccCC---CCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Q psy245 262 SLKYCNEILKELFSKKHS---SYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 262 ~~k~c~~iL~~l~~~~~~---~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 338 (566)
..+.|..||+.+..+++. ..++||.+||+.. ++||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 356788999999888753 4689999999987 78999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 339 YKYNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 339 ~~yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
+.||++||.||.+|..|+++|++.+.++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998764
No 22
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.1e-24 Score=186.07 Aligned_cols=95 Identities=29% Similarity=0.495 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCH
Q psy245 82 FISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161 (566)
Q Consensus 82 ~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL 161 (566)
..|..|++.|++|+.+|||..||+.. ++| |||++|++||||
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~--~~p-------------------------------------dY~~iIk~PmDL 43 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTAD--EAE-------------------------------------DYKKVITNPMDL 43 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChh--hcc-------------------------------------cHHHHcCCcCCH
Confidence 35678999999999999999999953 466 999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
+||++||++|.|.++++|.+||+|||.||++||+++|.|+..|..|++.|.+.+
T Consensus 44 ~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 44 QTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998764
No 23
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.1e-24 Score=187.62 Aligned_cols=102 Identities=31% Similarity=0.406 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
..|+..|..|++.|++|+.+|||..||+. .++| |||++|++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~--~~~p-------------------------------------~Y~~iIk~ 42 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTE--DIAP-------------------------------------GYHSVVYR 42 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCc--cccC-------------------------------------CHHHHhCC
Confidence 47889999999999999999999999996 3466 99999999
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
||||+||++||++|.|.++++|.+||+|||+||.+||+++|.++.+|..|++.|.+.+..+
T Consensus 43 PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 43 PMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999988653
No 24
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.2e-24 Score=183.85 Aligned_cols=99 Identities=39% Similarity=0.699 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
..+|..||..|..++ .+++|..||++. .+|+||++|++||||+||++||++|.|.|+.+|.+||+|||+||+.||
T Consensus 3 ~~~~~~il~~l~~~~---~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 77 (101)
T cd05509 3 YTQLKKVLDSLKNHK---SAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYN 77 (101)
T ss_pred HHHHHHHHHHHHhCC---CchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 568999999999987 678999999998 589999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 343 PPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
+++|.++.+|..|++.|+++++++
T Consensus 78 ~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 78 GPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998763
No 25
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.3e-23 Score=181.63 Aligned_cols=93 Identities=32% Similarity=0.508 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCC
Q psy245 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNP 343 (566)
Q Consensus 264 k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 343 (566)
..+..++..|. ++ .+|||.+||++. ++||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+
T Consensus 6 ~~L~~~~~~~~-~~---~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 6 KLLKFALERMK-QP---GAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHHh-Cc---CcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34455666666 44 689999999996 6999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy245 344 PDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 344 ~~s~v~~~A~~L~~~fe~~ 362 (566)
++|.++.+|..|.+.|+..
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999864
No 26
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.89 E-value=9.5e-24 Score=224.45 Aligned_cols=203 Identities=33% Similarity=0.488 Sum_probs=171.3
Q ss_pred hhhhhhhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHH
Q psy245 131 EYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKL 210 (566)
Q Consensus 131 ~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~ 210 (566)
.++.++..|..+|++..+|+||.+|+.||||.+|+++|+++.|.++++|+.|++|||.||.+||++++.++.+|..|++.
T Consensus 161 ~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~ 240 (371)
T COG5076 161 DGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKY 240 (371)
T ss_pred cccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHH
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccccccCCCCCCCCCCcccccccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCC
Q psy245 211 FLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVD 290 (566)
Q Consensus 211 f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd 290 (566)
|...+..++.............. ... +-..++... .....+|+|..++.
T Consensus 241 ~~~~i~~~~~~~~~~~~~~~~~~----------------------~~~------~~~~~i~~~---~~~~~~~~~~~~~~ 289 (371)
T COG5076 241 FLKLIEEIPEEMLELSIKPGREE----------------------REE------RESVLITNS---QAHVGAWPFLRPVS 289 (371)
T ss_pred HHHHHHhccccchhhccCccccc----------------------ccc------chhhccccc---ccccccccccccCC
Confidence 99999988864432211100000 000 001112222 23346799999998
Q ss_pred ccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 291 AAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 291 ~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
.. ..|+|+++|..+|+++|.+-++..+.|....+|..|..++|+||..||+.....+.-+..+..++...+.-.
T Consensus 290 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 290 DE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred cc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 88 689999999999999999999999999999999999999999999999999999999999999988877654
No 27
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.8e-23 Score=184.75 Aligned_cols=104 Identities=30% Similarity=0.445 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHHHhc-CCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 77 TNQLAFISKNVLKPVMKH-QHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~-~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
..+|...|..|++.|++| +.+|||..||+.. ++| |||++|
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~p-------------------------------------dY~~iI 45 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAP-------------------------------------DYYDII 45 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChh--hcC-------------------------------------CHHHHh
Confidence 357888899999999999 8999999999964 366 999999
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCC-HHHHHHHHHHHHHHHHhhhhc
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGE-DVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s-~i~~~A~~L~~~f~~~~~~~~ 219 (566)
++||||+||++||++|.|.++++|.+||+|||.||+.||++++ .++.+|..|++.|+..+..+|
T Consensus 46 k~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 46 KKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred cCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999765 688999999999999999886
No 28
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2e-23 Score=182.34 Aligned_cols=100 Identities=35% Similarity=0.612 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.+...|..|++.|++++.++||..|||+...++| |||++|++|
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p-------------------------------------~Y~~~I~~P 46 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIP-------------------------------------HYPTIIKKP 46 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCC-------------------------------------CHHHHhcCC
Confidence 3445566799999999999999999998777777 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
|||++|++||.+|.|.++.+|..||+|||+||+.||+++|.++.+|..|+..|++.+
T Consensus 47 ~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 47 MDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998753
No 29
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.9e-23 Score=181.19 Aligned_cols=98 Identities=45% Similarity=0.729 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCC
Q psy245 81 AFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMD 160 (566)
Q Consensus 81 ~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMd 160 (566)
...|..|++.|++++.+|+|..||+....++| +||++|++|||
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p-------------------------------------~Y~~~I~~P~d 44 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLP-------------------------------------DYFDIIKKPMD 44 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCC-------------------------------------CHHHHHcCCCC
Confidence 45788999999999999999999997665666 99999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 161 LGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 161 L~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
|+||++||++|.|.++.+|..|+++||.||+.||+++|.++.+|..|+..|+++|
T Consensus 45 l~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 45 LGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999876
No 30
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=4.6e-23 Score=182.23 Aligned_cols=102 Identities=38% Similarity=0.564 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccccc
Q psy245 262 SLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKY 341 (566)
Q Consensus 262 ~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~y 341 (566)
....|..|++.|+.++ .+|||.+|||.. ++||||++|++||||+||++||++|.|.|+.+|.+||+|||+||+.|
T Consensus 4 lr~~L~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 78 (112)
T cd05528 4 LRLFLRDVLKRLASDK---RFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEY 78 (112)
T ss_pred HHHHHHHHHHHHHhCC---CchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3456788999999987 678999999998 68999999999999999999999999999999999999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHHHHcCCC
Q psy245 342 NPPD----HDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 342 N~~~----s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
|+++ +.|+.+|..|++.|.+++.+..+
T Consensus 79 N~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 79 NPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 9994 79999999999999999998754
No 31
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.7e-23 Score=184.77 Aligned_cols=102 Identities=34% Similarity=0.649 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.....|..|++.|++++.+|||..||+.. ++| |||++|++|
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~p-------------------------------------dY~~vI~~P 52 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVP-------------------------------------DYYDIIKKP 52 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccc-------------------------------------cHHHHhcCc
Confidence 34446678999999999999999999953 466 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
|||+||++||++|.|.++.+|..||+|||.||++||+++|.++.+|..|+..|++.++++.
T Consensus 53 mDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 53 MDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred ccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998864
No 32
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.8e-23 Score=181.39 Aligned_cols=99 Identities=27% Similarity=0.416 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 263 LKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
.+.|.+|++.|+.+++ ...+++|.+||+.. .+|+||++|++||||+||++||+.|.|.|+.+|.+||+|||+||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKK--LYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCC--CCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 3679999999987773 45789999999987 689999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~ 363 (566)
.||+++|.+|.+|..|++.|++++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 33
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.6e-23 Score=181.21 Aligned_cols=100 Identities=25% Similarity=0.433 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 263 LKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
.+.|.+|+..+...++ ...+++|..||+.. ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888888877764 46899999999887 789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKIA 364 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~~ 364 (566)
.||+++|.+|.+|..|+++|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988753
No 34
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.3e-23 Score=180.34 Aligned_cols=100 Identities=42% Similarity=0.725 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
++..|..|++.|++|+.++||..||+... +| +||++|++||
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p-------------------------------------~Y~~~I~~Pm 42 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--AP-------------------------------------DYYDVIKKPM 42 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cC-------------------------------------CHHHHhcCCC
Confidence 46678899999999999999999999654 56 9999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
||+||++||.+|.|.++++|..||+|||+||+.||+++|.++.+|..|+..|++.++++
T Consensus 43 dL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 43 DLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999998764
No 35
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.5e-23 Score=183.43 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhccCC---CCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 263 LKYCNEILKELFSKKHS---SYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~---~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
++.|.+|+..|..+++. ..+.+|..+|+.. ++|+||++|++||||+||++||.+|.|.|+.+|.+||+|||+||+
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~--~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRR--NEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcc--cCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999987654 3667899988876 789999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
.||+++|.+|.+|..|+++|++.+.++.
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998874
No 36
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.8e-23 Score=179.42 Aligned_cols=94 Identities=32% Similarity=0.626 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCHH
Q psy245 83 ISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLG 162 (566)
Q Consensus 83 ~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~ 162 (566)
.|..|++.|++|+.++||..||+... +| |||++|++||||+
T Consensus 4 ~c~~il~~l~~~~~~~~F~~pv~~~~--~p-------------------------------------~Y~~iIk~PmdL~ 44 (97)
T cd05503 4 LCETILDEMEAHEDAWPFLEPVNTKL--VP-------------------------------------GYRKIIKKPMDFS 44 (97)
T ss_pred HHHHHHHHHHcCCCchhhcCCCCccc--cC-------------------------------------CHHHHhCCCCCHH
Confidence 57789999999999999999999643 56 9999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 163 TIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 163 tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
||++||++|.|.++++|..||+|||.||+.||+++|.++.+|..|++.|++.|
T Consensus 45 tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 45 TIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999875
No 37
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=6.8e-23 Score=180.81 Aligned_cols=102 Identities=32% Similarity=0.555 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
...+..|..|+..|++|+.+|||..||+. ..| +||.+|++
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p-------------------------------------~Y~~iI~~ 42 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVP-------------------------------------NYYKIIKT 42 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCC-------------------------------------CHHHHCCC
Confidence 35566788899999999999999999996 466 99999999
Q ss_pred CCCHHHHHHHhhc---cCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 158 PMDLGTIKKRLEN---FYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 158 PMdL~tI~~kL~~---~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
||||+||++||++ |.|.++++|.+||+|||+||+.||+++|.++.+|..|++.|++.+.++.
T Consensus 43 PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 43 PMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999998 6999999999999999999999999999999999999999999998864
No 38
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.4e-23 Score=181.22 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
|+..|+.|++.|+++.+. .++.++.+|..+|.+..+||||.+|++||
T Consensus 2 l~~~~~~il~~v~~~~d~---------------------------------~g~~~s~~F~~~p~~~~~pdYy~iI~~Pm 48 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDS---------------------------------DGRQLAEVFIQLPSRKELPEYYELIRKPV 48 (107)
T ss_pred HHHHHHHHHHHHHhhhCc---------------------------------CCCEeeHHhhcCCCcccCCCHHHHcCCCC
Confidence 677889999999999872 02335555666666667779999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
||+||++||.+|.|.++++|..||.|||.||+.||+++|.|+.+|..|++.|.+.++++
T Consensus 49 dl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 49 DFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988753
No 39
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=3.7e-23 Score=183.10 Aligned_cols=102 Identities=33% Similarity=0.609 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
|+++++.|++.|++|+.++||..||+... .| +||++|++||
T Consensus 1 ~~~~l~~ii~~l~~~~~s~~F~~pv~~~~--~p-------------------------------------~Y~~~I~~Pm 41 (112)
T cd05511 1 LSFILDEIVNELKNLPDSWPFHTPVNKKK--VP-------------------------------------DYYKIIKRPM 41 (112)
T ss_pred CHHHHHHHHHHHHhCCCchhhcCCCChhh--cc-------------------------------------cHHHHhcCCC
Confidence 46789999999999999999999999643 55 9999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
||+||++||.++.|.++++|..||+|||+||+.||+++|.++.+|..|+..|.+.+.+++.
T Consensus 42 dL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 42 DLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 40
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=5e-23 Score=179.57 Aligned_cols=97 Identities=44% Similarity=0.769 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhc---CCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 82 FISKNVLKPVMKH---QHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 82 ~~~~~v~~~l~~~---~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
..|..|++.|+++ ..++||..||++...++| |||++|++|
T Consensus 3 ~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p-------------------------------------~Y~~~I~~P 45 (102)
T cd05498 3 KFCSGILKELFSKKHKAYAWPFYKPVDPEALGLH-------------------------------------DYHDIIKHP 45 (102)
T ss_pred hHHHHHHHHHHhCCCccccCcccCcCCccccCCC-------------------------------------cHHHHccCC
Confidence 4677899999999 889999999998766667 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
|||++|++||++|.|.++.+|..||+|||+||+.||+++|.++.+|..|++.|+++|
T Consensus 46 mdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 46 MDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999875
No 41
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.88 E-value=6.7e-23 Score=181.18 Aligned_cols=103 Identities=29% Similarity=0.484 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
+|+.+|..|++.|++|+.+|||..||+... +| |||++|++|
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~p-------------------------------------dY~~vI~~P 43 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VP-------------------------------------DYYEIIKQP 43 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cC-------------------------------------cHHHHHcCC
Confidence 789999999999999999999999999643 56 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCC----CHHHHHHHHHHHHHHHHhhhhcc
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPG----EDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~----s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|||+||++||+++.|.++++|..||+|||.||+.||+++ +.|+.+|..|++.|.+++.+..+
T Consensus 44 mdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 44 MDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999995 69999999999999999987653
No 42
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.7e-23 Score=178.67 Aligned_cols=93 Identities=28% Similarity=0.504 Sum_probs=84.3
Q ss_pred HHHHHHHhcc---CCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCC
Q psy245 268 EILKELFSKK---HSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPP 344 (566)
Q Consensus 268 ~iL~~l~~~~---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 344 (566)
.|+..|..++ +...++||.++|+.. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||++
T Consensus 7 ~l~~~i~~~~~~~g~~~s~pF~~~p~~~--~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 7 QLYDTIRNARNNQGQLLAEPFLKLPSKR--KYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred HHHHHHHhhcCCCCCCccHhhhcCCCcc--cCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4455555544 456899999999987 68999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy245 345 DHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 345 ~s~v~~~A~~L~~~fe~~ 362 (566)
+|.+|.+|..|+++|+++
T Consensus 85 ~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 85 NSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 43
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=6.9e-23 Score=176.75 Aligned_cols=92 Identities=36% Similarity=0.470 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
.+.|..||+.|..+. .+++|..||+.. .+||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||
T Consensus 3 ~~~l~~il~~l~~~~---~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 77 (98)
T cd05513 3 QKALEQLIRQLQRKD---PHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYN 77 (98)
T ss_pred HHHHHHHHHHHHcCC---ccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467889999999877 567999999976 689999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQDVF 359 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~f 359 (566)
+++|.+|.+|..|...-
T Consensus 78 ~~~s~~~~~A~~L~~~~ 94 (98)
T cd05513 78 KPDTIYYKAAKKLLHSG 94 (98)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999997653
No 44
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=6.3e-23 Score=178.89 Aligned_cols=97 Identities=46% Similarity=0.802 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhc---CCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 82 FISKNVLKPVMKH---QHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 82 ~~~~~v~~~l~~~---~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
..|..|++.|+++ ..+|||..|||....++| |||++|++|
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~p-------------------------------------dY~~~I~~P 45 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIP-------------------------------------NYFSIIKKP 45 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCC-------------------------------------CHHHHhcCC
Confidence 3577899999994 569999999998765666 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
|||++|++||+++.|.++.+|..||+|||.||+.||+++|.++.+|..|++.|+++|
T Consensus 46 ~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 46 MDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999875
No 45
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=6.1e-23 Score=177.06 Aligned_cols=95 Identities=29% Similarity=0.401 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
|+.+|..|++.|++++.+++|..||+.. .+| |||++|++||
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~p-------------------------------------dY~~vIk~Pm 42 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAP-------------------------------------GYSSIIKHPM 42 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccc-------------------------------------cHHHHHcCcc
Confidence 6778899999999999999999999953 366 9999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHH
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLT 213 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~ 213 (566)
||+||++||+++.|.++.+|+.||+|||.||++||+++|.++++|..|...-.+
T Consensus 43 DL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 43 DFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGMK 96 (98)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999876443
No 46
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=5.8e-23 Score=179.06 Aligned_cols=100 Identities=29% Similarity=0.480 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCC
Q psy245 81 AFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMD 160 (566)
Q Consensus 81 ~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMd 160 (566)
+..|..|++.|+++.+. .+|.++.+|..+|++..+||||++|++|||
T Consensus 2 ~~~~~~l~~~i~~~~d~---------------------------------~gr~~~~~F~~lp~~~~~pdYy~vI~~Pmd 48 (103)
T cd05517 2 KQILEQLLEAVMTATDP---------------------------------SGRLISELFQKLPSKVLYPDYYAVIKEPID 48 (103)
T ss_pred hHHHHHHHHHHHHhhCc---------------------------------CCCChhHHHhcCCCCCCCCCHHHHcCCCcC
Confidence 56788899999998763 156688999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHH
Q psy245 161 LGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLT 213 (566)
Q Consensus 161 L~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~ 213 (566)
|+||++||.++.|.++.+|..||+|||.||+.||+++|.++.+|..|++.|..
T Consensus 49 L~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 49 LKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999975
No 47
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7.6e-23 Score=178.24 Aligned_cols=97 Identities=25% Similarity=0.397 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcc---CCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 264 KYCNEILKELFSKK---HSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 264 k~c~~iL~~l~~~~---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
+++..|+..|...+ +...+.+|..+|+.. ++||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKK--DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcc--cCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777776654 456788999999987 6899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q psy245 341 YNPPDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~ 362 (566)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 48
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=8.4e-23 Score=178.81 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.|+..|+.|++.|..+.+. .++.++.+|..+|++..+||||++|++|
T Consensus 2 ~l~~~l~~i~~~i~~~kd~---------------------------------~g~~~s~~F~~lp~k~~~pdYy~~I~~P 48 (106)
T cd05525 2 RLAQVLKEICDAIITYKDS---------------------------------NGQSLAIPFINLPSKKKNPDYYERITDP 48 (106)
T ss_pred hHHHHHHHHHHHHHHhhcc---------------------------------CCCcccHhhccCCCcccCCchhhhCCCC
Confidence 4677788888888888774 1455788999999999999999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHH
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTK 214 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~ 214 (566)
|||++|++||.+|.|.++++|..||.|||.||+.||+++|.++.+|..|++.|++.
T Consensus 49 ~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 49 VDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred cCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999864
No 49
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=8.2e-23 Score=178.14 Aligned_cols=98 Identities=23% Similarity=0.414 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 263 LKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
.+.|.+|+..|+.+.+ ...+++|..+++.. ++||||++|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~--~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKV--LYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCC--CCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 3578888888887764 35789999999987 689999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~ 362 (566)
.||++||.+|.+|..|+++|+..
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999853
No 50
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=8.9e-23 Score=176.32 Aligned_cols=90 Identities=33% Similarity=0.569 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCC
Q psy245 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNP 343 (566)
Q Consensus 264 k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 343 (566)
..+..+|..|..+. .+|+|.+|||.. .+|+||++|++||||+||++||.+|.|.|+++|..||+|||.||+.||+
T Consensus 4 ~~l~~il~~l~~~~---~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 78 (98)
T cd05512 4 VLLRKTLDQLQEKD---TAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNA 78 (98)
T ss_pred HHHHHHHHHHHhCC---CchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45778999999876 788999999987 6899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy245 344 PDHDVVAMAKKLQDV 358 (566)
Q Consensus 344 ~~s~v~~~A~~L~~~ 358 (566)
++|.+|.+|..|++.
T Consensus 79 ~~s~~~~~A~~l~~~ 93 (98)
T cd05512 79 KDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 51
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.4e-22 Score=179.69 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCH
Q psy245 82 FISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161 (566)
Q Consensus 82 ~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL 161 (566)
..|..|++.|+++.+.+ ++.++.+|..+|++..+||||++|++||||
T Consensus 5 ~~c~~il~~l~~~~~~~---------------------------------g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl 51 (113)
T cd05524 5 AVCQELYDTIRNYKSED---------------------------------GRILCESFIRVPKRRNEPEYYEVVSNPIDL 51 (113)
T ss_pred HHHHHHHHHHHhhcccC---------------------------------CCchhHHHhcCCCcccCCCHHHHhCCccCH
Confidence 45677899999887641 456788899999999999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
+||++||.++.|.++++|..||+|||.||+.||+++|.++.+|..|++.|++.++++..
T Consensus 52 ~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 52 LKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999988764
No 52
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.8e-22 Score=176.78 Aligned_cols=97 Identities=25% Similarity=0.362 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 264 KYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 264 k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
+.|..||..+...++ ...++||.++++.. .+||||++|++||||+||++||.+|.|.|+.+|..||.|||.||+.
T Consensus 5 ~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~--~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 5 QVLKEICDAIITYKDSNGQSLAIPFINLPSKK--KNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHhhccCCCcccHhhccCCCcc--cCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456777777766554 36889999999987 7899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q psy245 341 YNPPDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~ 362 (566)
||++||.+|.+|..|+++|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999864
No 53
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2e-22 Score=174.03 Aligned_cols=97 Identities=26% Similarity=0.283 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.|++ |+.|+..|+.++++++|..+.. ++| |||++|++|
T Consensus 3 ~l~~-ce~il~~l~~~~~s~~f~~~p~----~~p-------------------------------------dY~~iIk~P 40 (102)
T cd05501 3 ELLK-CEFLLLKVYCMSKSGFFISKPY----YIR-------------------------------------DYCQGIKEP 40 (102)
T ss_pred HHHH-HHHHHHHHHhCcccccccCCCC----CCC-------------------------------------chHHHcCCC
Confidence 3444 8999999999999999966321 466 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
|||+||++||.+|.|.++.+|++||+|||.||++||+++ .++.+|..|++.|++.|.+.
T Consensus 41 MDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 41 MWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999999999865
No 54
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.2e-22 Score=179.91 Aligned_cols=99 Identities=36% Similarity=0.637 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCC
Q psy245 266 CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPD 345 (566)
Q Consensus 266 c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 345 (566)
...|+..|+.++ .++||..||++. .+|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||+++
T Consensus 5 l~~ii~~l~~~~---~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 79 (112)
T cd05511 5 LDEIVNELKNLP---DSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPD 79 (112)
T ss_pred HHHHHHHHHhCC---CchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 457888998877 678999999998 589999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 346 HDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 346 s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
|.++.+|..|.+.|+.++..++..
T Consensus 80 s~i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 80 SVYTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999998654
No 55
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.2e-22 Score=175.48 Aligned_cols=93 Identities=31% Similarity=0.488 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
|..+|+.|++.|+.|+.+|+|..|||.. ++| |||++|++||
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~p-------------------------------------dY~~iIk~Pm 42 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVP-------------------------------------DYLDHIKQPM 42 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccC-------------------------------------CHHHHhcCCc
Confidence 5678889999999999999999999964 366 9999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHH
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLF 211 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f 211 (566)
||+||++||.++.|.++++|..||+|||.||+.||+++|.++++|..|++.-
T Consensus 43 DL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 43 DFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998753
No 56
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=7e-22 Score=178.95 Aligned_cols=105 Identities=29% Similarity=0.409 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
..+...|..+|..|+.......+++|..||+... .+|+||++|++||||+||++||.+|.|.++++|.+||+|||.||+
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788888888885555568999999999875 689999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHc
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKIAK 365 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~~~ 365 (566)
.||+++|.++.+|..|++.|..++..
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998753
No 57
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.7e-22 Score=174.74 Aligned_cols=83 Identities=34% Similarity=0.440 Sum_probs=79.6
Q ss_pred hhhhhhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHH
Q psy245 132 YPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLF 211 (566)
Q Consensus 132 ~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f 211 (566)
++.++++|..+|++..+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||+++|.|+.+|..|+++|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy245 212 LTK 214 (566)
Q Consensus 212 ~~~ 214 (566)
.++
T Consensus 100 ~~~ 102 (103)
T cd05518 100 KEK 102 (103)
T ss_pred Hhc
Confidence 764
No 58
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.6e-22 Score=174.96 Aligned_cols=83 Identities=33% Similarity=0.414 Sum_probs=79.2
Q ss_pred hhhhhhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHH
Q psy245 132 YPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLF 211 (566)
Q Consensus 132 ~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f 211 (566)
++.++.+|..+|++..+||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||+++|.++.+|..|+++|
T Consensus 20 g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f 99 (103)
T cd05520 20 GQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99 (103)
T ss_pred CCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy245 212 LTK 214 (566)
Q Consensus 212 ~~~ 214 (566)
+++
T Consensus 100 ~~~ 102 (103)
T cd05520 100 QAK 102 (103)
T ss_pred HHh
Confidence 864
No 59
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.8e-22 Score=174.28 Aligned_cols=103 Identities=31% Similarity=0.401 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
|+..|+.|++.|+++++. + ++.++.+|..+|++..+||||.+|++||
T Consensus 1 ~~~~~~~i~~~v~~~~~~-------~--------------------------~~~~~~~F~~~p~~~~~pdYy~iIk~Pm 47 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDE-------T--------------------------GRKLSELFLEKPSKKLYPDYYVIIKRPI 47 (103)
T ss_pred CHHHHHHHHHHHHHhcCc-------C--------------------------CCchhHHhcCCCCCCCCcCHHHHcCCCc
Confidence 467899999999988753 0 3446677888888888889999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
||++|++||++|.|.++.+|..||+|||.||++||+++|.++.+|..|++.|.+++
T Consensus 48 dl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 48 ALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998753
No 60
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=3.7e-22 Score=174.82 Aligned_cols=103 Identities=27% Similarity=0.355 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCC
Q psy245 81 AFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMD 160 (566)
Q Consensus 81 ~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMd 160 (566)
+..|+.|++.|.++.+.. ++.++.+|..+|++..+||||.+|++|||
T Consensus 2 ~~~~~~~~~~i~~~~d~~---------------------------------~~~~a~~F~~~p~~~~~pdYy~iIk~Pmd 48 (105)
T cd05515 2 QQKLWELYNAVKNYTDGR---------------------------------GRRLSLIFMRLPSKSEYPDYYDVIKKPID 48 (105)
T ss_pred hHHHHHHHHHHHHhhCcC---------------------------------CCcccHHhccCCCcccCCcHHHHcCCCcC
Confidence 456788999999987741 34466778888888888999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhh
Q psy245 161 LGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVS 216 (566)
Q Consensus 161 L~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~ 216 (566)
|+||++||.++.|.++++|..||.|||.||++||+++|.++.+|..|++.|.+...
T Consensus 49 L~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 49 MEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999987653
No 61
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=9.9e-22 Score=171.94 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
|+..|+.|++.|+++++.. ++.++.+|..+|++..+||||++|++||
T Consensus 2 l~~~~~~l~~~i~~~~~~~---------------------------------g~~~~~~F~~lp~~~~~pdYy~iI~~Pm 48 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEEN---------------------------------GIEIHPIFNVLPLRKDYPDYYKIIKNPL 48 (106)
T ss_pred HHHHHHHHHHHHHhhcCcC---------------------------------CCCchHhhhcCCccccCccHHHHhcCCC
Confidence 5677889999999988741 3447788999999999999999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhh
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVS 216 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~ 216 (566)
||+||++||++ |.++.+|..|+.|||.||+.||+++|.++.+|..|++.|.+.+.
T Consensus 49 dL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 49 SLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999998 99999999999999999999999999999999999999998774
No 62
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2e-21 Score=169.79 Aligned_cols=98 Identities=27% Similarity=0.318 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
++.+...|..+.+..+...+++|..+|+.. .+|+||++|++||||++|++||..|.|.++.+|..||+|||.||+.||
T Consensus 6 ~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 83 (104)
T cd05522 6 IKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 444555555555555567999999999987 689999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQDVFETK 362 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~ 362 (566)
+++|.+|.+|..|++.|+++
T Consensus 84 ~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 84 ENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 63
>KOG1472|consensus
Probab=99.85 E-value=1.3e-21 Score=215.95 Aligned_cols=98 Identities=34% Similarity=0.600 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCC
Q psy245 265 YCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPP 344 (566)
Q Consensus 265 ~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 344 (566)
....+|..|..|. .+|||.+||+.. ++||||++|++||||.||+.+|..+.|..+..|.+|+.+||+||+.||+.
T Consensus 610 ~~~~il~~l~~h~---~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 610 AIQNILDQLQNHG---DAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred HHHhHHhhhhcCC---ccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 4456777777666 789999999998 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCC
Q psy245 345 DHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 345 ~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
++..|..|..|..+|..++....
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred cchheecccchhhhhcchhhhhh
Confidence 99999999999999999887653
No 64
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=4.8e-21 Score=173.51 Aligned_cols=106 Identities=28% Similarity=0.375 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHHHHHHHH---hcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCc
Q psy245 74 GRNTNQLAFISKNVLKPVM---KHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQD 150 (566)
Q Consensus 74 ~~~~~~l~~~~~~v~~~l~---~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pd 150 (566)
......++..+..+++.|+ +++.++||..||+... .+| +
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p-------------------------------------~ 60 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYP-------------------------------------D 60 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCC-------------------------------------c
Confidence 3445566666667899999 8999999999999652 456 9
Q ss_pred ccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy245 151 YHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSA 217 (566)
Q Consensus 151 Y~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 217 (566)
||++|++||||+||++||.+|.|.++++|..||+|||.||++||+++|.++.+|..|+..|.+.+..
T Consensus 61 Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 61 YWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 65
>smart00297 BROMO bromo domain.
Probab=99.85 E-value=4.2e-21 Score=168.39 Aligned_cols=101 Identities=44% Similarity=0.738 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
.....|..|++.+.++. .+++|..||+.. .+|+||++|++||||++|++||++|.|.|+.+|.+||++||.||+.
T Consensus 7 ~~~~~~~~i~~~~~~~~---~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 7 KLQSLLKAVLDKLDSHR---LSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHhCc---cchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566777777776653 789999999988 5899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
||++++.++.+|..|++.|++.|+++
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999763
No 66
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=6.9e-21 Score=166.65 Aligned_cols=97 Identities=25% Similarity=0.318 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhccCC---CCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 264 KYCNEILKELFSKKHS---SYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 264 k~c~~iL~~l~~~~~~---~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
++|..++..++..++. ..+.+|..+++.. ++||||++|++||||+||++||.+ |.++.+|.+||+|||+||+.
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~--~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRK--DYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCccc--cCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 5677777777766643 4667899888876 689999999999999999999998 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIA 364 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~ 364 (566)
||++||.+|.+|..|+++|.+++.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998864
No 67
>smart00297 BROMO bromo domain.
Probab=99.83 E-value=1.3e-20 Score=165.22 Aligned_cols=102 Identities=43% Similarity=0.675 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCC
Q psy245 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIK 156 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk 156 (566)
...+..+|..|++.+.+|+.+++|..||+... .| +||.+|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p-------------------------------------~Y~~~i~ 45 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--AP-------------------------------------DYYDIIK 45 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhh--cc-------------------------------------CHHHHhc
Confidence 45788899999999999999999999998643 55 9999999
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSA 217 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 217 (566)
+||||++|++||++|.|.++.+|..||++||.||..||++++.++.+|..|+..|++.|.+
T Consensus 46 ~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 46 KPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 68
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.3e-20 Score=164.81 Aligned_cols=100 Identities=27% Similarity=0.274 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCH
Q psy245 82 FISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161 (566)
Q Consensus 82 ~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL 161 (566)
..++.|++.|.++.++ .++.++.+|..+|++..+||||++|++||||
T Consensus 4 ~~~~~i~~~v~~~~d~---------------------------------~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl 50 (104)
T cd05522 4 ARIKNILKGLRKERDE---------------------------------NGRLLTLHFEKLPDKAREPEYYQEISNPISL 50 (104)
T ss_pred HHHHHHHHHHHHHhCc---------------------------------CCCcccHHHhcCCCccccCcHHHHhCCCcCH
Confidence 4567888999888775 1344677888999988999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHH
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTK 214 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~ 214 (566)
++|++||.++.|.++.+|..||.|||.||+.||+++|.++.+|..|++.|+..
T Consensus 51 ~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 51 DDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999863
No 69
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=6.3e-20 Score=160.74 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 81 AFISKNVLKPVMK-HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 81 ~~~~~~v~~~l~~-~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
-.+|+.++..+.. .+.++||+.||...... +..+|+|+.+|++||
T Consensus 2 ~~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~----------------------------------~~~~pdY~~iIk~Pm 47 (109)
T cd05492 2 NCLLKFIVSRMKSWLPPDTTNRAIVLNKRGK----------------------------------ATKLPKRRRLIHTHL 47 (109)
T ss_pred chhHHHHHHHHHhcCcccccccccccccCch----------------------------------hccCCCHHHHhCCCC
Confidence 3567778888777 67789999999854322 223459999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
||+||++||++|.|.++++|..||.|||+||..||+++|.++.+|..|.+.+...+.++.
T Consensus 48 DL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 48 DVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred cHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888764
No 70
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.81 E-value=5.1e-20 Score=154.42 Aligned_cols=84 Identities=51% Similarity=0.866 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCC
Q psy245 266 CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPD 345 (566)
Q Consensus 266 c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 345 (566)
|..||..|++++ .+++|..||+.. .+|+|+++|++||||++|++||++|.|.++.+|..||++||.||+.||+++
T Consensus 1 C~~il~~l~~~~---~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~ 75 (84)
T PF00439_consen 1 CREILEELMKHP---ISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPD 75 (84)
T ss_dssp HHHHHHHHHTST---TGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHcCC---CchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCc
Confidence 899999999988 778999999776 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH
Q psy245 346 HDVVAMAKK 354 (566)
Q Consensus 346 s~v~~~A~~ 354 (566)
|.+|.+|.+
T Consensus 76 s~~~~~A~~ 84 (84)
T PF00439_consen 76 SPIYKAAEK 84 (84)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHhcC
Confidence 999999974
No 71
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.81 E-value=7.1e-20 Score=156.87 Aligned_cols=97 Identities=44% Similarity=0.673 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCC
Q psy245 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNP 343 (566)
Q Consensus 264 k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 343 (566)
..|..++..+..+. ...+++|..||+.. .+|+||++|++||||++|++||..|.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~~~~~i~~~l~~~~-~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 3 KKLRSLLDALKKLK-RDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHhhc-ccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56889999998873 22678999999986 5899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy245 344 PDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 344 ~~s~v~~~A~~L~~~fe~~~ 363 (566)
.++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 72
>KOG0008|consensus
Probab=99.80 E-value=2.1e-19 Score=204.49 Aligned_cols=217 Identities=27% Similarity=0.445 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.++-++..++..+....+..||..||+... ++ |||.||+.|
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~-------------------------------------dyy~vi~~P 1301 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAKE--VK-------------------------------------DYYRVITPP 1301 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchhh--cc-------------------------------------chhhccCCC
Confidence 567788899999999999999999999754 45 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCcc
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFT 238 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~ 238 (566)
|||.++++.+....|.+-++|+.|+.+|+.|..+||++.+.+...++.+...+-..|.+-....-...+....
T Consensus 1302 ~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inp------- 1374 (1563)
T KOG0008|consen 1302 MDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINP------- 1374 (1563)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCc-------
Confidence 9999999999999999999999999999999999999999999999888777766665433322111111000
Q ss_pred cccccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhC
Q psy245 239 TQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA 318 (566)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~ 318 (566)
..+... .+ ..-....++.++..- ..+|+|.+||+.+ .+|+||.+|++||||.+|.+++..
T Consensus 1375 ----------lld~~d---~v--~~~~~d~~vs~~~~i---pes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~ 1434 (1563)
T KOG0008|consen 1375 ----------LLDDDD---QV--AFFILDNIVSQMKEI---PESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPP 1434 (1563)
T ss_pred ----------ccCccc---hh--hHhhhhhHHHHHHhc---chhcccccccchh--hchHHHHHhcChhhHHHHhhcCCc
Confidence 000000 00 011223344443332 3679999999999 589999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHH
Q psy245 319 REYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFET 361 (566)
Q Consensus 319 ~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~ 361 (566)
+.|.+..+|..||++|+.||..||+..+....-|+.+-.+...
T Consensus 1435 ~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~ 1477 (1563)
T KOG0008|consen 1435 HKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLA 1477 (1563)
T ss_pred cccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999988655555544444333
No 73
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.80 E-value=1.8e-19 Score=157.47 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.++.++..|+++|++|.+. .||.++++|..||++ +++||.+|+.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~---------------------------------~Gr~~s~~f~~LP~~--~~~~~~~ik~P 47 (110)
T cd05526 3 LVQELLATLFVSVMNHQDE---------------------------------EGRCYSDSLAELPEL--AVDGVGPKKIP 47 (110)
T ss_pred HHHHHHHHHHHHHHhccCC---------------------------------CCCCchHHHHHCCCc--ccCchhhhcCC
Confidence 5788899999999999885 277899999999994 46888999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
|||.+|++||.+|.|+++++|..||.+||.||++||+++|.||.+|..|..+|...-.++
T Consensus 48 i~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 48 LTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred ccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765543
No 74
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=2.8e-19 Score=156.67 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=78.0
Q ss_pred CcCcccCCCc---cccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Q psy245 282 AWPFYKPVDA---AWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDV 358 (566)
Q Consensus 282 a~pF~~PVd~---~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~ 358 (566)
.+||..||.+ ...++|+||++|++||||+||++||++|.|+++++|.+||+|||+||..||+++|.++.+|..|.+.
T Consensus 19 ~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d 98 (109)
T cd05492 19 DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRD 98 (109)
T ss_pred cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4699999974 3335999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHcC
Q psy245 359 FETKIAKA 366 (566)
Q Consensus 359 fe~~~~~~ 366 (566)
....+.++
T Consensus 99 ~~~el~Ei 106 (109)
T cd05492 99 TCHDLREL 106 (109)
T ss_pred HHHHHHHH
Confidence 88877765
No 75
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.77 E-value=5.7e-19 Score=148.04 Aligned_cols=84 Identities=40% Similarity=0.645 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCHHH
Q psy245 84 SKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGT 163 (566)
Q Consensus 84 ~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~t 163 (566)
|..|++.|++|+.+++|..||+.. .+| +|+.+|++||||++
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p-------------------------------------~y~~~i~~P~dL~~ 41 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYP-------------------------------------DYYEIIKNPMDLST 41 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TST-------------------------------------THHHHSSSS--HHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCC-------------------------------------CHHHHHhhccchhh
Confidence 678999999999999999999643 355 99999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHH
Q psy245 164 IKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQT 206 (566)
Q Consensus 164 I~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~ 206 (566)
|++||++|.|.++.+|..||++||.||+.||+++|.++.+|..
T Consensus 42 I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 42 IRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred hhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 9999999999999999999999999999999999999999974
No 76
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.77 E-value=8.2e-19 Score=150.24 Aligned_cols=95 Identities=41% Similarity=0.566 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhc--CCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCC
Q psy245 82 FISKNVLKPVMKH--QHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPM 159 (566)
Q Consensus 82 ~~~~~v~~~l~~~--~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PM 159 (566)
..|..|++.|+++ +.+++|..||+.. ..| +|+.+|++||
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~-------------------------------------~Y~~~i~~P~ 43 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPK--EAP-------------------------------------DYYEVIKNPM 43 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChh--cCC-------------------------------------CHHHHHhCcc
Confidence 4678899999999 9999999999863 355 9999999999
Q ss_pred CHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 160 DLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 160 dL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
||++|++||.+|.|.++.+|..||++||.||+.||+.++.++.+|..|+..|++.+
T Consensus 44 ~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 44 DLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998753
No 77
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.74 E-value=6.4e-18 Score=147.68 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcc---CCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 263 LKYCNEILKELFSKK---HSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
......|+..++.+. +..++.+|.+.+.. .++||++|++||||++|++||+.|.|+++++|..||.|||.||+
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~----~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPEL----AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCCc----ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 345667778888877 44688899998873 36889999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
+||.+||.+|.+|..|+.+|....+++.
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998877653
No 78
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.70 E-value=2e-17 Score=176.05 Aligned_cols=206 Identities=25% Similarity=0.231 Sum_probs=137.4
Q ss_pred cccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCC
Q psy245 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPN 229 (566)
Q Consensus 150 dY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~ 229 (566)
.+.......|....+..... ..... .+...+-.+.+..+.+|+................+...-...+......
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---- 120 (371)
T COG5076 47 NLFQKQLKRMPKEYITSIVD-DREPG-SMANVNDDLENVGGITYSPFEKNRPESLRFDEIVFLAIESVTPESGLGS---- 120 (371)
T ss_pred ccchhhhcccchhhhhhhhc-ccccc-cccccCcchhcccCcccCCccccccccccccceeccccccccccccccc----
Confidence 55556667788888888877 55555 7777777777777777776432222211111111111111011000000
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCCh
Q psy245 230 RGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDL 309 (566)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL 309 (566)
.......++ .............+......+...+..+....+..+.++|..+|+.. .+|+||+||+.||||
T Consensus 121 -~~~~~~~~~------~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~--~~PdYy~iIk~Pm~L 191 (371)
T COG5076 121 -LLMAHLKTS------VKKRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKR--EYPDYYEIIKSPMDL 191 (371)
T ss_pred -cccccchHH------HHhhcCCcccchhHHHHHHHHHHHHHHhhcccccccccccccCCccc--cCCChheeecchhhH
Confidence 000000000 00001111222344455566666666677777777889999999887 699999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy245 310 GTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370 (566)
Q Consensus 310 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~ 370 (566)
++|+++|..|.|+++++|..|+.|||+||+.||.+++.||.+|..|++.|..++..++...
T Consensus 192 ~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 192 LTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999887654
No 79
>KOG1245|consensus
Probab=99.64 E-value=1.7e-16 Score=189.24 Aligned_cols=96 Identities=41% Similarity=0.753 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCC
Q psy245 266 CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPD 345 (566)
Q Consensus 266 c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 345 (566)
|..||.+|..|. .||||++||++. .+|+||+||++||||+||+.|+..|.|.++.+|..||.|||.||..||..
T Consensus 1306 ~e~il~e~~~~~---~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~- 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHK---AAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED- 1379 (1404)
T ss_pred HHHHHHHHHHhh---hcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-
Confidence 899999999988 789999999998 69999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCC
Q psy245 346 HDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 346 s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
|.|+..+..|.++|++.|....
T Consensus 1380 s~i~~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1380 SEIGRAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hhhhhhcchHHHHHHHHHHhhc
Confidence 9999999999999999988653
No 80
>KOG1245|consensus
Probab=99.58 E-value=1.3e-15 Score=181.82 Aligned_cols=95 Identities=33% Similarity=0.668 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCHHH
Q psy245 84 SKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGT 163 (566)
Q Consensus 84 ~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~t 163 (566)
|..|+..|+.|+.||||++||+... +| |||+||++||||+|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp-------------------------------------~Y~~IIk~Pmdl~t 1346 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VP-------------------------------------DYYDIIKKPMDLST 1346 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cc-------------------------------------cHHHHhcChhHHHH
Confidence 7889999999999999999999654 55 99999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 164 IKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 164 I~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
|+.|+..|.|.+..+|..||.|||.||.+||.+ |.|++....|.++|...|...
T Consensus 1347 ir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1347 IREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 999999999999999877643
No 81
>KOG1827|consensus
Probab=99.42 E-value=2.7e-13 Score=148.39 Aligned_cols=232 Identities=17% Similarity=0.149 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHHHHhhhh-hhhhhhhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhcc
Q psy245 113 FLIFRFLVFQHWVLSMYI-EYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCY 191 (566)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~-~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~ 191 (566)
+++.+|...-..+++.-. +++-+++.|.+||.+...|+||.+|..||+|..|++|+..+.|.+++.|..|+.||+.||+
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 455566555555555444 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCc-cc-ccccccCCCCCCCCCCCcchHHHHHHHHHH
Q psy245 192 VYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSF-TT-QLATSVTSVGDQGSYAKPKLTESLKYCNEI 269 (566)
Q Consensus 192 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~k~c~~i 269 (566)
.||..++.++++|..|+..|.....+.......... ......+.. .. ........ .....+ |.-+
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~-~~~l~~~~l~~~~~~~~~i~~----~~~~~g--------d~vl 198 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMES-NEELKAGGLHYHELGPVEIDG----TKYIVG--------DYVL 198 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhhccccchhhcccc-ccccccCCCCcccCCCccccC----cccccC--------ceee
Confidence 999999999999999999998766431110000000 000000000 00 00000000 000000 0000
Q ss_pred HHHHHh--ccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCH
Q psy245 270 LKELFS--KKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHD 347 (566)
Q Consensus 270 L~~l~~--~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~ 347 (566)
+..--. ..+-.....|+..+|.+ .+++||.+++-+|-+..+.+++..++|-....|..|+..+|.|+..|+.....
T Consensus 199 v~~~~d~~~p~v~~Ier~w~~~dg~--k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~y 276 (629)
T KOG1827|consen 199 VQNPADNLKPIVAQIERLWKLPDGE--KWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEY 276 (629)
T ss_pred ecCcccccCCceeeecccccCcccc--cccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHh
Confidence 000000 00001224566766766 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy245 348 VVAMAKKLQDVF 359 (566)
Q Consensus 348 v~~~A~~L~~~f 359 (566)
++..+..|.+.+
T Consensus 277 i~~~p~~ls~~d 288 (629)
T KOG1827|consen 277 ISGDPENLSEED 288 (629)
T ss_pred hhcCcccccccc
Confidence 999999887654
No 82
>KOG0008|consensus
Probab=99.38 E-value=1.7e-13 Score=156.95 Aligned_cols=167 Identities=29% Similarity=0.439 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCH
Q psy245 82 FISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161 (566)
Q Consensus 82 ~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL 161 (566)
+++..++..+++...+|||+.||+... +| +||.+|++||||
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~--~~-------------------------------------~yy~kik~pmdl 1425 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKR--VP-------------------------------------DYYKKIKNPMDL 1425 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhh--ch-------------------------------------HHHHHhcChhhH
Confidence 788888999888999999999999765 55 999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCccccc
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQL 241 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 241 (566)
.+|.+++..+.|.+.++|.+||++|+.||..||+..+.+..-|+.+-.+....+.+.-
T Consensus 1426 ~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~e~~---------------------- 1483 (1563)
T KOG0008|consen 1426 ETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANLLEYI---------------------- 1483 (1563)
T ss_pred HHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999988888888777665543221
Q ss_pred ccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCC
Q psy245 242 ATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREY 321 (566)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y 321 (566)
..|.++=.. .+..|..+|... +.++|-+++. ||+.||...+..-+|
T Consensus 1484 ----------------------~~~~~le~~--------is~~~~~a~~~~--ea~~~dd~~~--~d~~t~~d~~~d~e~ 1529 (1563)
T KOG0008|consen 1484 ----------------------EHLLQLEEN--------ISTLFEAAVEKA--EAPDYDDIVP--GDLSTIPDDVRDTEY 1529 (1563)
T ss_pred ----------------------HHHHHHHHh--------HHHHHHHHHHhh--hcCCccccCC--CCCCCCcchhhcccc
Confidence 112111111 223466677665 6899999998 999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccccCC
Q psy245 322 KSSKEFADDVRLIFTNCYKYNP 343 (566)
Q Consensus 322 ~s~~ef~~Dv~Lif~Na~~yN~ 343 (566)
.+-.+|.+||..+=.|+-.|-+
T Consensus 1530 ~~~~~~~~~~~q~~~n~~~~~g 1551 (1563)
T KOG0008|consen 1530 SDSMQRDADVWQIKSNAHVYDG 1551 (1563)
T ss_pred chhhhcccceeeeccccccccC
Confidence 9999999999999999998844
No 83
>KOG1472|consensus
Probab=99.37 E-value=3.6e-13 Score=149.66 Aligned_cols=105 Identities=37% Similarity=0.609 Sum_probs=96.8
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCC
Q psy245 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIK 156 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk 156 (566)
...+...+..+++.|.+|.++|||..||+.. ++| |||.+|+
T Consensus 604 ~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~p-------------------------------------dyy~~I~ 644 (720)
T KOG1472|consen 604 PGKLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVP-------------------------------------DYYDVIK 644 (720)
T ss_pred cchhhHHHHhHHhhhhcCCccCCccCccccc--cCC-------------------------------------cHHHHhc
Confidence 3456667778999999999999999999954 366 9999999
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
+||||.||+.+|.++.|..+.+|+.|+.+||.||+.||+.++..++.|..|+..|...+.....
T Consensus 645 ~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 645 HPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998887654
No 84
>KOG1828|consensus
Probab=99.32 E-value=6.4e-13 Score=136.15 Aligned_cols=203 Identities=18% Similarity=0.100 Sum_probs=134.9
Q ss_pred CcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc-----cc-
Q psy245 149 QDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE-----SG- 222 (566)
Q Consensus 149 pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~-----~~- 222 (566)
|+|.++|..|||+.|++.+++-++|.++.+|..|.++++.|+..||-.++.++..|++|..+-...+.+--. ..
T Consensus 50 p~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~qe~~l~f~~~slg 129 (418)
T KOG1828|consen 50 PNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMTQERLLSFVNTSLG 129 (418)
T ss_pred cchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhcchhhHHHHHhhhcccc
Confidence 399999999999999999999999999999999999999999999999999999999998876655544211 00
Q ss_pred --cccc----------------CCC-CC-CCCCCccccccccc----C------CCCCC--CCCC-------CcchHHHH
Q psy245 223 --RQIK----------------KPN-RG-SDEGSFTTQLATSV----T------SVGDQ--GSYA-------KPKLTESL 263 (566)
Q Consensus 223 --~k~~----------------~~~-~~-~~~~~~~~~~~~~~----~------~~~~~--~~~~-------~~~~~~~~ 263 (566)
...+ ... .. ...+.......... + +.... ...+ ...+..-.
T Consensus 130 ~y~~~rn~~~~v~~la~~~~sr~~~~d~~a~~s~ee~~l~v~~~e~~~~~~~~fs~k~~e~~~e~~~~lgds~g~lqtg~ 209 (418)
T KOG1828|consen 130 FYEDKRNKVTPVLYLAYGPYSRYHYDDTFANISKEESDLIVSTYEEDSDLPSDFSHKFLETCQERVVTLGDSVGDLQTGG 209 (418)
T ss_pred hhhhcccccCceeeeccCCccchhhhhhcCCCcccccccccccccccccccccccccccccCccceEehhhhhhhhcccc
Confidence 0000 000 00 00000000000000 0 00000 0000 00010001
Q ss_pred HHHHHH-HHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 264 KYCNEI-LKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 264 k~c~~i-L~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
.+.... ...+...... ..|..++... ..|.|--+|++++|++|++.+..++.|.| .+|..|+.||+.||++||
T Consensus 210 ~~l~~~q~~kl~~~~p~---~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~g 283 (418)
T KOG1828|consen 210 QQLQTLQEDKLNRVDPV---AYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNG 283 (418)
T ss_pred HHHHHHHHHHhcccCch---hhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcC
Confidence 111121 1222222211 2355666655 47999999999999999999999999999 999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy245 343 PPDHDVVAMAKKLQD 357 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~ 357 (566)
.+....|.+|..+..
T Consensus 284 ehsk~yyelank~lh 298 (418)
T KOG1828|consen 284 EHSKSYYELANKQLH 298 (418)
T ss_pred CcchHHHHHHHhhhh
Confidence 999999999988876
No 85
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.26 E-value=3.5e-12 Score=113.27 Aligned_cols=80 Identities=26% Similarity=0.363 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCC-------CCCCHHHHHHHHHHHHhcc
Q psy245 266 CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAR-------EYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 266 c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~-------~Y~s~~ef~~Dv~Lif~Na 338 (566)
|..+|..|..+.+...+|||..||++...++||||++|++||||+||+++|..+ .|..-..+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 444444444444445889999999997779999999999999999999999987 4555566677777788888
Q ss_pred cccCCCC
Q psy245 339 YKYNPPD 345 (566)
Q Consensus 339 ~~yN~~~ 345 (566)
..+|.-+
T Consensus 85 ~~~~~~~ 91 (114)
T cd05494 85 SPSNIYA 91 (114)
T ss_pred Ccccccc
Confidence 7777643
No 86
>KOG1827|consensus
Probab=99.16 E-value=5.7e-11 Score=130.40 Aligned_cols=151 Identities=23% Similarity=0.246 Sum_probs=121.0
Q ss_pred HHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCcccccccccCCCCCCCCCCCcch
Q psy245 180 ISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKL 259 (566)
Q Consensus 180 ~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (566)
+.|+.||..|+..||.+.+.+++.+..+.+.-......+. +. .... -.
T Consensus 3 ~~df~l~~e~~~~~~~p~s~p~k~~~~~~~~~~~~k~~~~----------~~-------------------d~p~---i~ 50 (629)
T KOG1827|consen 3 VADFPLMTENACSDNEPDSLPGKDAKNLQKTPLHDKTLMG----------RD-------------------DSPV---ID 50 (629)
T ss_pred hhhhhHHhhccccccCCccccccCcchhhhchhhhhcccC----------CC-------------------Cccc---cC
Confidence 5799999999999999999999999998886544330000 00 0000 01
Q ss_pred HHHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 260 TESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
...+.++..+|..++.+.+ ..+...|.+..+.. ..|+||.+|.+||+|..|++|+..+.|.+.+.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~--~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRK--EFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhccccc--cCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 2334455666666666554 45777899988887 689999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHH
Q psy245 337 NCYKYNPPDHDVVAMAKKLQDVFETKIA 364 (566)
Q Consensus 337 Na~~yN~~~s~v~~~A~~L~~~fe~~~~ 364 (566)
||+.||..++.+|.++..|+..|..+..
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999998664
No 87
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.14 E-value=3.9e-11 Score=106.54 Aligned_cols=79 Identities=25% Similarity=0.319 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
.+..++ .+++.++.|+.+|||..||+....++| |||++|++|
T Consensus 4 ~~~~~l-~~l~~~~~~~~~~pF~~PVd~~~~~~p-------------------------------------dY~~iIK~P 45 (114)
T cd05494 4 ALERVL-RELKRHRRNEDAWPFLEPVNPPRRGAP-------------------------------------DYRDVIKRP 45 (114)
T ss_pred HHHHHH-HHHHHhhhCCCCCCcCCCCCchhcCCC-------------------------------------ChhhhcCCC
Confidence 344444 477888888899999999998777788 999999999
Q ss_pred CCHHHHHHHhhccCC-------CCHHHHHHHHHHhhhhccccCC
Q psy245 159 MDLGTIKKRLENFYY-------WSGKEAISDFNTMFTNCYVYNK 195 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y-------~s~~ef~~Dv~lif~N~~~yN~ 195 (566)
|||+||+++|.++.+ ..-....+++..++.||..+|.
T Consensus 46 MDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (114)
T cd05494 46 MSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNI 89 (114)
T ss_pred CChHHHHHHHHccccccccccccccccccccccccccccCcccc
Confidence 999999999999744 3333445556666666666654
No 88
>KOG0386|consensus
Probab=99.09 E-value=1.9e-10 Score=129.83 Aligned_cols=106 Identities=28% Similarity=0.348 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCH
Q psy245 82 FISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161 (566)
Q Consensus 82 ~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL 161 (566)
..+..|+....+|.++ .+|.+++.|.++|++..|||||.+|+.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~---------------------------------~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~ 1073 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDS---------------------------------AGRELSEVFLKLPSRKEYPDYYEIIKKPVAI 1073 (1157)
T ss_pred HHHHHHHHHHHhcccc---------------------------------cccccchhcccCcccccccchHHHhcchhhH
Confidence 4566788888888775 1567889999999999999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
..|.++|.++.|.+..+...||.++|.|+++||..+|.+|.+|..|..+|......+..
T Consensus 1074 ~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1074 DKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred HHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988888765
No 89
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.94 E-value=4.4e-10 Score=98.84 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=39.4
Q ss_pred CCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCC
Q psy245 305 KPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPD 345 (566)
Q Consensus 305 ~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 345 (566)
.||||+||++||.+|.|.++.+|.+||+|||+||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 68999999999999999999999999999999999999864
No 90
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.92 E-value=1.1e-09 Score=96.31 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCC
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP 196 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~ 196 (566)
.||||+||++||.+|+|.++.+|++||+|||.||+.||.+
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 5899999999999999999999999999999999999975
No 91
>KOG0955|consensus
Probab=98.82 E-value=4.7e-09 Score=121.86 Aligned_cols=105 Identities=31% Similarity=0.492 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
...+.++.++..+....-. ..|..|||.. ++|||+++|++||||.|++.++.+|.|.++++|.+|+.||..||+.
T Consensus 565 p~~kLl~~~l~~lq~kD~~---gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 565 PFKKLLQKSLDKLQKKDSY---GIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred hHHHHHHHHHHHhhccccc---CceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 3455666777777665532 3799999998 6899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~ 370 (566)
||..+..+|..|..+++.-...+.+++.+.
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~arke~ 669 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNARKEP 669 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhcccch
Confidence 999999999999999999999998876654
No 92
>KOG0386|consensus
Probab=98.72 E-value=1.6e-08 Score=114.77 Aligned_cols=102 Identities=30% Similarity=0.408 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhccCC---CCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 264 KYCNEILKELFSKKHS---SYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 264 k~c~~iL~~l~~~~~~---~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
+.|..|+.....+.+. ..+..|...+... .+||||+||+.||++..|.+++..+.|.+..+...||.++|.||+.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k--~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRK--EYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccc--cccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 5588888877766653 4567899888887 5899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
||..||.||.+|..|+.+|......+.
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHh
Confidence 999999999999999999999887764
No 93
>KOG0955|consensus
Probab=98.72 E-value=1.3e-08 Score=118.34 Aligned_cols=106 Identities=28% Similarity=0.395 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
+.+..+.++..+++.|.+.+....|..|||... +| ||.++|
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~p-------------------------------------dy~~ii 602 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LP-------------------------------------DYIDII 602 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChhh--cc-------------------------------------cHHHHh
Confidence 455677788888899999998889999999644 45 999999
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
++||||.||..++.+|.|.++++|..|+.+|+.||+.||..+..+|+.|..+++.....+...+.
T Consensus 603 k~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~ark 667 (1051)
T KOG0955|consen 603 KKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARK 667 (1051)
T ss_pred cCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999998888877654
No 94
>KOG1828|consensus
Probab=97.70 E-value=1.5e-05 Score=82.62 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=65.8
Q ss_pred hhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHH
Q psy245 136 LAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209 (566)
Q Consensus 136 ~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~ 209 (566)
.+||.-.|.....|.|..+|++|++..|++.+..++.|.| -+|..|+.+|+.||++||+++..+|..|+.+..
T Consensus 226 ~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 226 VAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 3455556666777899999999999999999999999999 899999999999999999999999999988876
No 95
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.98 E-value=0.009 Score=54.09 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=57.8
Q ss_pred CCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy245 306 PMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371 (566)
Q Consensus 306 PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~ 371 (566)
|.||..|++||+.|.|.++.+|..||-.|+.-++.-.+...++-+....+.-+|-+++.++..+..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 889999999999999999999999999999988887776666666677788889999988887764
No 96
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=94.94 E-value=0.028 Score=50.95 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=45.9
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSAR 218 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 218 (566)
|-||..|++|+..|.|.++.+|.+||-.|++-++.=.+....+-+.-..+..+|.+.+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998777554433334443444555666666554
No 97
>KOG0732|consensus
Probab=92.07 E-value=0.19 Score=59.66 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=47.7
Q ss_pred CCcccccCCCCCCHHHHHHHhhccCCCCHHHHHH--HHHHhhhhccccCCCC
Q psy245 148 LQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAIS--DFNTMFTNCYVYNKPG 197 (566)
Q Consensus 148 ~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~--Dv~lif~N~~~yN~~~ 197 (566)
+++|..+|+++||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 550 ~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 550 FQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred hHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 5599999999999999999999999999999999 9999999999999865
No 98
>KOG0644|consensus
Probab=89.32 E-value=0.31 Score=55.80 Aligned_cols=61 Identities=26% Similarity=0.404 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHh
Q psy245 155 IKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 155 Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 215 (566)
..-|..+..|..||++.+|++.+.|..|+-.|..||.+|.+.+..+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 4568899999999999999999999999999999999999988777766777777666544
No 99
>KOG0644|consensus
Probab=87.44 E-value=0.42 Score=54.85 Aligned_cols=61 Identities=16% Similarity=0.403 Sum_probs=52.9
Q ss_pred ccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHH
Q psy245 303 IKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKI 363 (566)
Q Consensus 303 Ik~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~ 363 (566)
-.-|..|..|+.+|++..|++.+.|..||..|.+||.+|.+-+..+-..+..|..+|..-+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3568999999999999999999999999999999999999988877777777777776543
No 100
>KOG0732|consensus
Probab=76.52 E-value=1.1 Score=53.38 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=54.6
Q ss_pred cCcccCCCccc---cCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHH--HHHHHHhcccccCCCC
Q psy245 283 WPFYKPVDAAW---LGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFAD--DVRLIFTNCYKYNPPD 345 (566)
Q Consensus 283 ~pF~~PVd~~~---~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~--Dv~Lif~Na~~yN~~~ 345 (566)
..|..|++... +.+.+|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 534 ~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 534 VIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 45677766422 235699999999999999999999999999999999 9999999999999975
No 101
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=41.52 E-value=35 Score=27.46 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 310 GTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 310 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
..|+..+.+|.|.|..++..|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999888776
No 102
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=37.19 E-value=72 Score=27.49 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 318 AREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 318 ~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
+..|.|..-|...+..|-.....++..+..+..+|..++..|++-|.+..
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 45688999999988888877777777788999999999999999998653
No 103
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=36.77 E-value=45 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.9
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhh
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFT 188 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~ 188 (566)
..|+..+..|.|.|.++.++|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999887664
No 104
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=25.48 E-value=76 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhh
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFT 188 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~ 188 (566)
.-|+..+..|.|.|.+++++|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 569999999999999999999766654
No 105
>PF14933 CEP19: CEP19-like protein
Probab=25.02 E-value=1.1e+02 Score=28.84 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHhccCCCCcchHHHHHHH--HhhCCCCCCCCC------Cc----------EEEeCCCCChHHHHHHHHHHHHHhccCC
Q psy245 501 LSLDINKLPGKKLGRVVHII--QSREPSLRDSNP------DE----------IEIDFETLKPSTLRELEKYVATCLRKKP 562 (566)
Q Consensus 501 Ls~~I~~Lp~e~L~~Vv~II--~~~~p~~~~~~~------dE----------iEiDid~L~~~tLr~L~~yV~~cL~kk~ 562 (566)
...-|+.++.-++.+.+.|+ +..+++...... +. -+.|+..|++.+|.+-..-+...+.+..
T Consensus 54 hk~yL~~i~~~Ql~kl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlNk~~~~eL~~~K~~Md~~F~~N~ 133 (159)
T PF14933_consen 54 HKSYLQQISLLQLEKLLSILSTQDHLPGQSLDESLEQKQQEADLDLLYRDPEPEEDLNKLDDEELAKVKEIMDELFEKNR 133 (159)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhccccCCChhhhhhhcccccccchhhccCCCccccccCCHHHHHHHHHHHHHHHHHcC
Confidence 44567778888888888888 665555321110 11 5789999999999999998888888887
Q ss_pred CCCC
Q psy245 563 RKPN 566 (566)
Q Consensus 563 ~kp~ 566 (566)
.||.
T Consensus 134 ~~p~ 137 (159)
T PF14933_consen 134 IKPG 137 (159)
T ss_pred CCCC
Confidence 7773
No 106
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=24.93 E-value=89 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 310 GTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 310 ~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
.-|+.++.+|.|.|..+++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999998655554
No 107
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=22.57 E-value=1.8e+02 Score=25.02 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 171 FYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 171 ~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
..|.|..-|...+..|-.....++..+..+..+|..+...|.+.|.+..
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678888888877777776666676678899999999999999998654
No 108
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=20.19 E-value=53 Score=32.21 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=40.6
Q ss_pred hhhhhhhhhccccccccCCcccccCCCCCC------HHHHHHHhhc-cCCCCHHHHHHHHHHhhhhccccCCCC
Q psy245 131 EYPILLAFALTVPVLIILQDYHKVIKHPMD------LGTIKKRLEN-FYYWSGKEAISDFNTMFTNCYVYNKPG 197 (566)
Q Consensus 131 ~~r~~~~~f~~lP~~~~~pdY~~iIk~PMd------L~tI~~kL~~-~~Y~s~~ef~~Dv~lif~N~~~yN~~~ 197 (566)
..|.++-|..+--.-+.-|..-..+..|.+ ++.++...+. ..+..+ .|..-++.|+.||+.|++..
T Consensus 133 QLr~FIP~mvk~StGr~kpgWgk~~~~P~WWP~dvpws~vr~d~R~e~~K~~v-sWt~aLR~IV~nCYk~Hgre 205 (214)
T PF10491_consen 133 QLRAFIPFMVKCSTGRGKPGWGKESCRPPWWPPDVPWSNVRSDVRTEEQKQKV-SWTQALRTIVKNCYKYHGRE 205 (214)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCCCCCccCcccccCCHHhcccc-cHHHHHHHHHHHHHHHhcHH
Confidence 556666666666555555555555555533 3333322222 134443 78999999999999999853
Done!