Query psy245
Match_columns 566
No_of_seqs 469 out of 2712
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:36:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uv5_A Transcription initiatio 100.0 1.7E-46 5.8E-51 379.7 16.8 227 76-368 11-239 (265)
2 3aad_A Transcription initiatio 100.0 3.2E-45 1.1E-49 374.9 17.4 225 77-367 45-271 (292)
3 2r0y_A Chromatin structure-rem 100.0 5.2E-42 1.8E-46 353.2 19.0 205 131-366 43-263 (311)
4 2r10_A Chromatin structure-rem 100.0 6.4E-42 2.2E-46 360.0 19.5 204 132-366 94-313 (361)
5 2ouo_A HUNK1 protein, bromodom 100.0 6.7E-30 2.3E-34 231.0 9.9 118 252-369 13-130 (130)
6 2oss_A HUNK1 protein, bromodom 100.0 4.8E-29 1.7E-33 224.5 12.2 122 62-220 4-125 (127)
7 3jvl_A Bromodomain-containing 100.0 3.8E-29 1.3E-33 223.2 8.9 114 257-370 5-118 (120)
8 4alg_A Bromodomain-containing 100.0 1.4E-28 4.7E-33 228.6 10.3 122 64-222 17-138 (154)
9 2oss_A HUNK1 protein, bromodom 99.9 3.5E-27 1.2E-31 212.4 14.0 112 255-369 14-126 (127)
10 2dat_A Possible global transcr 99.9 1.1E-26 3.7E-31 208.1 13.6 107 260-368 12-121 (123)
11 4alg_A Bromodomain-containing 99.9 6.3E-27 2.2E-31 217.4 12.3 115 255-372 25-140 (154)
12 3g0l_A Hwalp4, bromodomain adj 99.9 1E-26 3.6E-31 206.5 11.3 105 258-367 10-114 (117)
13 2ouo_A HUNK1 protein, bromodom 99.9 6.7E-27 2.3E-31 211.4 8.1 119 64-220 8-129 (130)
14 3d7c_A General control of amin 99.9 3.1E-26 1.1E-30 201.9 12.0 105 259-368 5-109 (112)
15 1e6i_A Transcriptional activat 99.9 1.5E-26 5E-31 206.7 9.6 104 261-369 13-116 (121)
16 3mb4_A Protein polybromo-1; PB 99.9 5E-26 1.7E-30 204.1 11.2 108 259-368 13-123 (124)
17 3g0l_A Hwalp4, bromodomain adj 99.9 6.4E-26 2.2E-30 201.4 10.8 111 70-219 4-114 (117)
18 2grc_A Probable global transcr 99.9 6.2E-26 2.1E-30 204.8 10.8 109 258-368 8-120 (129)
19 3p1f_A CREB-binding protein; s 99.9 9.6E-26 3.3E-30 200.9 11.4 107 258-366 8-114 (119)
20 3fkm_X Signaling protein; brom 99.9 9.4E-26 3.2E-30 212.1 11.3 107 258-367 18-124 (166)
21 3d7c_A General control of amin 99.9 7.8E-26 2.7E-30 199.3 10.1 107 75-220 3-109 (112)
22 2yyn_A Transcription intermedi 99.9 1.2E-25 4.2E-30 204.4 11.6 107 259-371 18-126 (135)
23 3nxb_A CAT eye syndrome critic 99.9 1.1E-25 3.7E-30 199.7 11.0 100 261-365 16-115 (116)
24 2i7k_A Bromodomain-containing 99.9 1.7E-25 6E-30 198.3 11.9 106 258-368 5-110 (117)
25 3iu5_A Protein polybromo-1; PB 99.9 9.8E-26 3.4E-30 199.9 10.1 106 261-368 5-113 (116)
26 2d9e_A Peregrin; four-helix bu 99.9 1.8E-25 6.1E-30 199.6 11.2 104 261-369 7-110 (121)
27 3fkm_X Signaling protein; brom 99.9 1.4E-25 4.6E-30 211.0 10.9 113 71-220 13-125 (166)
28 2dat_A Possible global transcr 99.9 2.2E-25 7.7E-30 199.5 11.5 108 74-220 8-121 (123)
29 3q2e_A Bromodomain and WD repe 99.9 1.9E-25 6.4E-30 200.1 10.7 106 260-370 9-115 (123)
30 3mb3_A PH-interacting protein; 99.9 1.7E-25 5.9E-30 203.6 10.0 105 259-368 19-124 (135)
31 3mqm_A Probable histone-lysine 99.9 2.3E-25 7.9E-30 200.3 9.9 107 259-367 7-116 (126)
32 3k2j_A Protein polybromo-1; PB 99.9 3.5E-25 1.2E-29 200.0 10.9 110 257-368 13-125 (130)
33 3p1f_A CREB-binding protein; s 99.9 3.3E-25 1.1E-29 197.4 10.4 111 72-219 4-115 (119)
34 3hme_A Bromodomain-containing 99.9 5.1E-25 1.7E-29 197.2 10.4 104 258-366 10-113 (123)
35 2d9e_A Peregrin; four-helix bu 99.9 5.3E-25 1.8E-29 196.5 10.4 106 76-220 4-109 (121)
36 3jvl_A Bromodomain-containing 99.9 2.9E-25 9.9E-30 198.0 8.7 109 74-220 5-116 (120)
37 3ljw_A Protein polybromo-1; al 99.9 4.1E-25 1.4E-29 197.1 9.7 108 259-368 6-116 (120)
38 2i7k_A Bromodomain-containing 99.9 1E-24 3.5E-29 193.4 11.3 107 75-220 4-110 (117)
39 3rcw_A Bromodomain-containing 99.9 1.3E-24 4.4E-29 197.8 11.4 106 258-368 10-115 (135)
40 3mb3_A PH-interacting protein; 99.9 6.1E-25 2.1E-29 199.9 9.3 109 73-220 15-124 (135)
41 1e6i_A Transcriptional activat 99.9 8.6E-25 2.9E-29 195.2 9.4 100 82-220 16-115 (121)
42 3q2e_A Bromodomain and WD repe 99.9 7.1E-25 2.4E-29 196.3 8.6 109 74-221 5-114 (123)
43 2grc_A Probable global transcr 99.9 1.7E-24 5.8E-29 195.4 10.4 110 74-222 6-122 (129)
44 3ljw_A Protein polybromo-1; al 99.9 1.9E-24 6.5E-29 192.7 9.4 107 75-220 4-116 (120)
45 2yyn_A Transcription intermedi 99.9 2.7E-24 9.3E-29 195.5 10.2 108 74-221 15-124 (135)
46 3nxb_A CAT eye syndrome critic 99.9 1.5E-24 5.2E-29 192.2 8.1 100 79-217 16-115 (116)
47 3mb4_A Protein polybromo-1; PB 99.9 3.5E-24 1.2E-28 192.1 9.5 106 75-219 11-122 (124)
48 3hme_A Bromodomain-containing 99.9 4.7E-24 1.6E-28 190.9 9.9 103 78-219 12-114 (123)
49 3tlp_A Protein polybromo-1; PB 99.9 3.4E-24 1.2E-28 198.4 8.9 108 261-370 24-135 (150)
50 2ri7_A Nucleosome-remodeling f 99.9 6.1E-24 2.1E-28 201.5 10.7 103 260-367 71-173 (174)
51 3rcw_A Bromodomain-containing 99.9 7E-24 2.4E-28 192.9 10.7 104 78-220 12-115 (135)
52 3uv4_A Second bromodomain of h 99.9 8.4E-24 2.9E-28 197.0 11.0 109 258-368 22-132 (158)
53 3mqm_A Probable histone-lysine 99.9 6E-24 2.1E-28 191.1 9.1 105 77-220 7-117 (126)
54 2jns_A Bromodomain-containing 99.9 4.5E-24 1.6E-28 180.0 6.6 85 481-566 6-90 (90)
55 3k2j_A Protein polybromo-1; PB 99.9 1.2E-23 4.1E-28 189.9 9.4 108 75-221 13-126 (130)
56 3iu5_A Protein polybromo-1; PB 99.9 1E-23 3.4E-28 186.9 8.5 102 80-220 6-113 (116)
57 3o36_A Transcription intermedi 99.9 6.4E-23 2.2E-27 196.2 11.6 105 257-367 77-183 (184)
58 3uv4_A Second bromodomain of h 99.9 2.4E-23 8.1E-28 194.0 8.1 105 77-220 27-132 (158)
59 3dai_A ATPase family AAA domai 99.9 8.6E-23 2.9E-27 184.5 11.5 100 260-364 9-112 (130)
60 2ri7_A Nucleosome-remodeling f 99.9 7.9E-23 2.7E-27 193.9 9.8 105 76-219 69-173 (174)
61 2ro1_A Transcription intermedi 99.9 5.8E-23 2E-27 197.1 7.8 103 258-370 73-180 (189)
62 3dai_A ATPase family AAA domai 99.9 2E-22 6.8E-27 182.1 9.7 100 78-216 9-112 (130)
63 2dkw_A Hypothetical protein KI 99.9 4.3E-22 1.5E-26 179.8 11.0 98 258-365 9-110 (131)
64 3tlp_A Protein polybromo-1; PB 99.9 1.4E-22 4.7E-27 187.7 6.8 102 80-220 25-133 (150)
65 2dkw_A Hypothetical protein KI 99.9 9.2E-22 3.2E-26 177.7 10.8 99 75-217 8-110 (131)
66 3u5n_A E3 ubiquitin-protein li 99.9 6.5E-22 2.2E-26 192.7 10.6 106 258-369 78-203 (207)
67 3o36_A Transcription intermedi 99.9 7.3E-22 2.5E-26 188.9 10.1 105 75-219 77-183 (184)
68 3uv5_A Transcription initiatio 99.9 9.9E-22 3.4E-26 198.4 11.6 105 259-368 12-116 (265)
69 2ro1_A Transcription intermedi 99.8 9.2E-22 3.2E-26 188.7 7.4 102 76-221 73-179 (189)
70 3aad_A Transcription initiatio 99.8 4.1E-21 1.4E-25 196.3 7.8 103 260-367 46-148 (292)
71 3u5n_A E3 ubiquitin-protein li 99.8 8.3E-21 2.8E-25 184.9 9.4 105 76-220 78-202 (207)
72 3iu6_A Protein polybromo-1; PB 99.8 2.3E-19 7.9E-24 162.9 11.2 110 76-222 4-113 (147)
73 2r0y_A Chromatin structure-rem 99.8 2.2E-19 7.5E-24 184.8 6.7 70 148-217 193-262 (311)
74 2r10_A Chromatin structure-rem 99.8 3.9E-19 1.3E-23 186.7 6.8 79 139-217 234-312 (361)
75 3iu6_A Protein polybromo-1; PB 99.7 8.6E-18 2.9E-22 152.6 9.5 105 261-371 7-114 (147)
76 3lqh_A Histone-lysine N-methyl 99.4 1.3E-13 4.3E-18 130.8 7.8 93 263-371 77-169 (183)
77 3lqh_A Histone-lysine N-methyl 99.4 1.8E-13 6.1E-18 129.8 6.2 93 78-220 74-166 (183)
78 2lm0_A AF4/FMR2 family member 95.5 0.019 6.4E-07 49.7 5.7 60 494-555 60-120 (125)
No 1
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=1.7e-46 Score=379.70 Aligned_cols=227 Identities=26% Similarity=0.474 Sum_probs=192.1
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
....|..+|..||+.|++|+.+|||..||+... +| |||.+|
T Consensus 11 ~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~p-------------------------------------dY~~iI 51 (265)
T 3uv5_A 11 PMVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VK-------------------------------------DYYKII 51 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--ST-------------------------------------THHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cC-------------------------------------CHHHHh
Confidence 356899999999999999999999999999643 56 999999
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCC
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEG 235 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~~~~~~~ 235 (566)
++||||+||++||++|.|.++.+|+.||+|||+||++||+++|.|+.+|..|...|++.|.++...-....+...
T Consensus 52 ~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~----- 126 (265)
T 3uv5_A 52 TRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN----- 126 (265)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS-----
T ss_pred CCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-----
Confidence 999999999999999999999999999999999999999999999999999999999999987642111100000
Q ss_pred CcccccccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhcc--CCCCCcCcccCCCccccCCCchhhhccCCCChHHHH
Q psy245 236 SFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKK--HSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVK 313 (566)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~~--~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk 313 (566)
+. ... .....|..+|..+..++ ....+|||..||+.. .+||||++|++||||+||+
T Consensus 127 --------p~--------~dd----~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~ 184 (265)
T 3uv5_A 127 --------PL--------LDD----DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIR 184 (265)
T ss_dssp --------TT--------TTC----HHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHH
T ss_pred --------hc--------ccc----chhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHH
Confidence 00 000 11233444555544322 234789999999988 6999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 314 AKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 314 ~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
+||++|.|.++.+|..||+|||+||+.||+++|.||.+|..|+++|++.|.++..
T Consensus 185 ~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~ 239 (265)
T 3uv5_A 185 KNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 239 (265)
T ss_dssp HHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998853
No 2
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-45 Score=374.92 Aligned_cols=225 Identities=26% Similarity=0.469 Sum_probs=189.0
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCC
Q psy245 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIK 156 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk 156 (566)
...+..+|..||+.|++|+.+|||.+||+.. .+| |||++|+
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p-------------------------------------dY~~iIk 85 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVK-------------------------------------DYYKIIT 85 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TST-------------------------------------THHHHCS
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcc-------------------------------------cHHHHcC
Confidence 3678899999999999999999999999964 356 9999999
Q ss_pred CCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccccccccCCCCCCCCCC
Q psy245 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGS 236 (566)
Q Consensus 157 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~k~~~~~~~~~~~~ 236 (566)
+||||+||++||++|.|.++.+|..||+|||+||++||+++|.++.+|..|++.|++.|.++...-....+...
T Consensus 86 ~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~~~~~e~~i~------ 159 (292)
T 3aad_A 86 RPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN------ 159 (292)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGSHHHHHHHHHTTS------
T ss_pred CcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcchhhhhhhhhccc------
Confidence 99999999999999999999999999999999999999999999999999999999999887542111100000
Q ss_pred cccccccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhc--cCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHH
Q psy245 237 FTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSK--KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314 (566)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~l~~~--~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~ 314 (566)
+. ... .....|..+|+.+... .....+|||..|||.. .+||||++|++||||+||++
T Consensus 160 -------Pl--------~dd----~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~ 218 (292)
T 3aad_A 160 -------PL--------LDD----DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRK 218 (292)
T ss_dssp -------SS--------TTC----HHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHH
T ss_pred -------cc--------ccc----chhHHHHHHHHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHH
Confidence 00 000 0011244445544322 1234789999999987 69999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 315 kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
||++|.|.++.+|.+||+|||+||+.||+++|.||.+|..|+++|++.|..+.
T Consensus 219 kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~ 271 (292)
T 3aad_A 219 NISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 271 (292)
T ss_dssp HHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998864
No 3
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=5.2e-42 Score=353.24 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=167.3
Q ss_pred hhhhhhhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCC-CHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHH
Q psy245 131 EYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYW-SGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209 (566)
Q Consensus 131 ~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~-s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~ 209 (566)
.+|.++.+|..+|++..+||||++|++||||+||++|| +.|. ++++|+.||+|||.||++||+++|.|+.+|..|++
T Consensus 43 ~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~ 120 (311)
T 2r0y_A 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 120 (311)
T ss_dssp HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 56777788888888888889999999999999999999 5555 89999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccccccCCCCCCCCCCcccccccccCCCCCCCCCCCcchHHHHHHHHHHHH-------HHH----hc--
Q psy245 210 LFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILK-------ELF----SK-- 276 (566)
Q Consensus 210 ~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~-------~l~----~~-- 276 (566)
.|++.|.+...... +... . + .......+.|..++. .++ ..
T Consensus 121 ~~~~~~~k~k~~~~----~~~i-----~------~------------~~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~ 173 (311)
T 2r0y_A 121 LIEFEVLKAKNLKR----NYLI-----N------S------------EVKAKLLHYLNKLVDATEKKINQALLGASSPKN 173 (311)
T ss_dssp HHHHHHHHHHTGGG----CCBC-----C------H------------HHHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSS
T ss_pred HHHHHHhhcccCCC----CCCC-----C------h------------HHHHHHHHHHHHHHhhhHHHHHHHHhccccccc
Confidence 99999987532110 0000 0 0 000112223333321 111 10
Q ss_pred --cCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHH
Q psy245 277 --KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKK 354 (566)
Q Consensus 277 --~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~ 354 (566)
....++|||++|||.. ++||||+||++||||+||++||++|.|.++.+|.+||+|||+||+.||+++|.||.+|..
T Consensus 174 ~~~~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 251 (311)
T 2r0y_A 174 LDDKVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 251 (311)
T ss_dssp CCCSSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred cccCCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1235899999999987 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q psy245 355 LQDVFETKIAKA 366 (566)
Q Consensus 355 L~~~fe~~~~~~ 366 (566)
|+++|+++|++.
T Consensus 252 L~~~f~~~~~~~ 263 (311)
T 2r0y_A 252 LTNYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999974
No 4
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=6.4e-42 Score=360.02 Aligned_cols=204 Identities=24% Similarity=0.356 Sum_probs=161.1
Q ss_pred hhhhhhhhccccccccCCcccccCCCCCCHHHHHHHhhccCCC-CHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHH
Q psy245 132 YPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYW-SGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKL 210 (566)
Q Consensus 132 ~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~-s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~ 210 (566)
++.++.+|..+|++..+||||++|++||||+||++|| +.|. ++++|+.||+|||.||++||+++|.|+.+|..|+++
T Consensus 94 ~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~ 171 (361)
T 2r10_A 94 YKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVML 171 (361)
T ss_dssp THHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHH
T ss_pred CCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 3344444444444555669999999999999999999 4554 899999999999999999999999999999999999
Q ss_pred HHHHhhhhccccccccCCCCCCCCCCcccccccccCCCCCCCCCCCcchHHHHHHHHHHHHH-------HH----hc---
Q psy245 211 FLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKE-------LF----SK--- 276 (566)
Q Consensus 211 f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~iL~~-------l~----~~--- 276 (566)
|++.|.+..... .+. .. . ........+.|..++.. .+ ..
T Consensus 172 ~~~~~~k~k~~~----~~~-------~i----~------------~~~k~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~ 224 (361)
T 2r10_A 172 IEFEVLKAKNLK----RNY-------LI----N------------SEVKAKLLHYLNKLVDATEKKINQALLGASSPKNL 224 (361)
T ss_dssp HHHHHHHHHTTT----TCC-------BC----C------------HHHHHHHHHHHHHHHHCCHHHHHHHHHGGGCCSSC
T ss_pred HHHHHhhccccC----CcC-------cC----C------------HHHHHHHHHHHHHhhccchHHHHHHHhcccccccc
Confidence 999998653211 000 00 0 00011122334333321 11 00
Q ss_pred -cCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccCCCCCHHHHHHHHH
Q psy245 277 -KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKL 355 (566)
Q Consensus 277 -~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~v~~~A~~L 355 (566)
....++|||++|||.. ++||||+||++||||+||++||++|.|.++.+|.+||+|||+||+.||+++|.||.+|..|
T Consensus 225 ~~~~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L 302 (361)
T 2r10_A 225 DDKVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302 (361)
T ss_dssp CCSSCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred ccCCcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 1235899999999987 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q psy245 356 QDVFETKIAKA 366 (566)
Q Consensus 356 ~~~fe~~~~~~ 366 (566)
+++|+.+|++.
T Consensus 303 ~~~f~~~~~~~ 313 (361)
T 2r10_A 303 TNYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999974
No 5
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=6.7e-30 Score=231.05 Aligned_cols=118 Identities=63% Similarity=1.154 Sum_probs=107.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHH
Q psy245 252 GSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDV 331 (566)
Q Consensus 252 ~~~~~~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv 331 (566)
...++.+++++++.|..||..|+++++..++|||.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||
T Consensus 13 ~~~k~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv 92 (130)
T 2ouo_A 13 APEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADV 92 (130)
T ss_dssp ------CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567788999999999999999988766789999999998778999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 332 RLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 332 ~Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
+|||+||+.||+++|.||.+|..|+++|+++|++++.+
T Consensus 93 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~e 130 (130)
T 2ouo_A 93 RLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130 (130)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999753
No 6
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.96 E-value=4.8e-29 Score=224.51 Aligned_cols=122 Identities=62% Similarity=1.126 Sum_probs=115.1
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy245 62 VQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALT 141 (566)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~ 141 (566)
+++|...++.+.++.+++|+++|+.|++.|++|+.+|||..|||...+++|
T Consensus 4 ~p~p~~~~~~~~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~p----------------------------- 54 (127)
T 2oss_A 4 PPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLP----------------------------- 54 (127)
T ss_dssp CCCCCCCCTTSCCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCT-----------------------------
T ss_pred CCCCCcCCcCcCcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCc-----------------------------
Confidence 456677777888999999999999999999999999999999998766777
Q ss_pred ccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 142 VPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 142 lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|||++|++||||+||++||++|.|.++++|..||+|||+||++||+++|.++.+|..|++.|++.|++++.
T Consensus 55 --------dY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 55 --------DYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp --------THHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred --------cHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 7
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=3.8e-29 Score=223.24 Aligned_cols=114 Identities=64% Similarity=1.194 Sum_probs=107.5
Q ss_pred cchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 257 PKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 257 ~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
.+++++++.|..||..|.++++..++|||.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||+
T Consensus 5 ~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~ 84 (120)
T 3jvl_A 5 SKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFS 84 (120)
T ss_dssp CSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 46678999999999999999877789999999999988899999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy245 337 NCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370 (566)
Q Consensus 337 Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~ 370 (566)
||+.||+++|.||.+|..|+++|++.|++++.+.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 85 NCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 9999999999999999999999999999998754
No 8
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=1.4e-28 Score=228.63 Aligned_cols=122 Identities=61% Similarity=1.105 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhcccc
Q psy245 64 PPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVP 143 (566)
Q Consensus 64 ~~~~~~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP 143 (566)
.+.+++|.++++.+++|+.+|+.||+.|++++.+|||..|||...+++|
T Consensus 17 ~~~~~~p~~~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~P------------------------------- 65 (154)
T 4alg_A 17 GSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLP------------------------------- 65 (154)
T ss_dssp ---------CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCT-------------------------------
T ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCC-------------------------------
Confidence 4566778889999999999999999999999999999999998777777
Q ss_pred ccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q psy245 144 VLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESG 222 (566)
Q Consensus 144 ~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 222 (566)
|||++|++||||+||++||+++.|.++++|+.||+|||.||++||+++|.|+.+|..|++.|++.|.+++...
T Consensus 66 ------dY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 66 ------DYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp ------THHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------CHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998643
No 9
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.94 E-value=3.5e-27 Score=212.38 Aligned_cols=112 Identities=42% Similarity=0.797 Sum_probs=100.5
Q ss_pred CCcchHHHHHH-HHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHH
Q psy245 255 AKPKLTESLKY-CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRL 333 (566)
Q Consensus 255 ~~~~~~~~~k~-c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~L 333 (566)
+.++....++. |..||..|.++. .+|+|.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|
T Consensus 14 ~~~r~~~~l~~~~~~il~~L~~~~---~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l 90 (127)
T 2oss_A 14 KPKRQTNQLQYLLRVVLKTLWKHQ---FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNT 90 (127)
T ss_dssp SCCCCCHHHHHHHHTHHHHHHTST---TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHhCc---cchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444455554 556999998876 78999999998767899999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 334 IFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 334 if~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
||+||+.||+++|.||.+|..|+++|+++|++++.+
T Consensus 91 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 91 MFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999998753
No 10
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=208.14 Aligned_cols=107 Identities=23% Similarity=0.394 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 260 TESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
..+.+.|..||+.|+.+++ ..++|+|.+||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 5778899999999999875 35799999999986 799999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 337 NCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 337 Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
||+.||+++|.||.+|..|+++|+++++++|.
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999874
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=6.3e-27 Score=217.40 Aligned_cols=115 Identities=42% Similarity=0.821 Sum_probs=102.9
Q ss_pred CCcchHHHHHHH-HHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHH
Q psy245 255 AKPKLTESLKYC-NEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRL 333 (566)
Q Consensus 255 ~~~~~~~~~k~c-~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~L 333 (566)
+.++++..++.| ..||+.|.++. ++|||.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|
T Consensus 25 ~~~r~t~~l~~~~~~il~~l~~~~---~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~L 101 (154)
T 4alg_A 25 KPGRVTNQLQYLHKVVMKALWKHQ---FAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNT 101 (154)
T ss_dssp -CCCCBHHHHHHHHTHHHHHHTST---TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhCc---CchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344555666555 55788888875 78999999999988899999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy245 334 IFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPI 372 (566)
Q Consensus 334 if~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~~ 372 (566)
||.||+.||+++|.||.+|..|+++|+++|++++.+..+
T Consensus 102 if~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e 140 (154)
T 4alg_A 102 MFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQE 140 (154)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCB
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 999999999999999999999999999999999876543
No 12
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.94 E-value=1e-26 Score=206.50 Aligned_cols=105 Identities=34% Similarity=0.648 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
.....++.|..||..|.+++ .+|||.+|||.. .+||||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 10 ~~~~~~~~c~~il~~l~~~~---~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (117)
T 3g0l_A 10 DDSKDLALCSMILTEMETHE---DAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDN 84 (117)
T ss_dssp CCTTHHHHHHHHHHHHHTST---TCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCC---CchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34467899999999999887 689999999997 5899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
|+.||+++|.+|.+|..|+++|+++|+++.
T Consensus 85 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 85 CETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999764
No 13
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.93 E-value=6.7e-27 Score=211.37 Aligned_cols=119 Identities=39% Similarity=0.718 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCC---CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy245 64 PPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQH---AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFAL 140 (566)
Q Consensus 64 ~~~~~~~~~~~~~~~~l~~~~~~v~~~l~~~~~---~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~ 140 (566)
.++.+++.+.++.++++++ |..||+.|+++++ +|||..|||...+++|
T Consensus 8 s~~~~~~~k~~~~~~~l~~-c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~p---------------------------- 58 (130)
T 2ouo_A 8 SQQHPAPEKSSKVSEQLKC-CSGILKEMFAKKHAAYAWPFYKPVDVEALGLH---------------------------- 58 (130)
T ss_dssp -----------CHHHHHHH-HHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCT----------------------------
T ss_pred CCCCCCCCCCcccHHHHHH-HHHHHHHHHhCCcchhHHHhcCCCChhhccCC----------------------------
Confidence 3444556677788888875 5679999999875 8999999998777777
Q ss_pred cccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 141 TVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 141 ~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|||++|++||||+||++||++|.|.++.+|..||+|||.||++||+++|.|+.+|..|++.|++.|.++|.
T Consensus 59 ---------dY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 59 ---------DYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp ---------THHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ---------cHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 14
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=3.1e-26 Score=201.85 Aligned_cols=105 Identities=30% Similarity=0.569 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Q psy245 259 LTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 338 (566)
...+...|..||..|.+++ .+|||.+|||+. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+||
T Consensus 5 ~~~l~~~~~~il~~l~~~~---~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na 79 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHP---SAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANC 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSG---GGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---CchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHH
Confidence 3567899999999999987 789999999987 69999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 339 YKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 339 ~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
+.||+++|.+|.+|..|++.|+++|+++..
T Consensus 80 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 80 REYNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999998764
No 15
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=1.5e-26 Score=206.65 Aligned_cols=104 Identities=34% Similarity=0.657 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
...+.|..||..|..+. .+|||.+|||.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+||+.
T Consensus 13 ~~~~~~~~il~~l~~~~---~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 87 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHA---AAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRM 87 (121)
T ss_dssp TTHHHHHHHHHHHHHST---TCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---CchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999876 789999999987 6999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
||+++|.+|.+|..|+++|+++|++++.+
T Consensus 88 yN~~~s~i~~~A~~L~~~f~~~~~~~p~~ 116 (121)
T 1e6i_A 88 YNGENTSYYKYANRLEKFFNNKVKEIPEY 116 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999998654
No 16
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=5e-26 Score=204.11 Aligned_cols=108 Identities=23% Similarity=0.349 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy245 259 LTESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIF 335 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 335 (566)
...+.+.|..||..|...++ ..++++|..||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677899999999998664 46889999999987 79999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 336 TNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 336 ~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
.||+.||+++|.||.+|..|+++|++.|+++..
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 91 NNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998854
No 17
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=6.4e-26 Score=201.40 Aligned_cols=111 Identities=29% Similarity=0.494 Sum_probs=102.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCC
Q psy245 70 PHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQ 149 (566)
Q Consensus 70 ~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~p 149 (566)
.+++++........|..|++.|++|+.+|||..|||... +|
T Consensus 4 ~~k~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~p------------------------------------- 44 (117)
T 3g0l_A 4 VKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKL--VP------------------------------------- 44 (117)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--ST-------------------------------------
T ss_pred CcCCCcCCHHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cC-------------------------------------
Confidence 445566666777888999999999999999999999643 56
Q ss_pred cccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 150 dY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
|||++|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.|.++-
T Consensus 45 dY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 45 GYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp THHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864
No 18
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=6.2e-26 Score=204.82 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHHhccC----CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHH
Q psy245 258 KLTESLKYCNEILKELFSKKH----SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRL 333 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~----~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~L 333 (566)
....+.+.|..||..|+.+++ ..++|+|..||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345778999999999999874 35789999999976 799999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 334 IFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 334 if~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
||+||+.||+++|.||.+|..|+++|++.|+++..
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999998854
No 19
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.93 E-value=9.6e-26 Score=200.85 Aligned_cols=107 Identities=36% Similarity=0.638 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
...+..+.|..+|..|+... ..+|||.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 8 ~~~el~~~l~~~l~~l~~~~--~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQD--PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCT--TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999998743 3789999999998878999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
|+.||+++|.+|.+|..|+++|++.|.++
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 20
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=9.4e-26 Score=212.05 Aligned_cols=107 Identities=28% Similarity=0.431 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
....+.+.|..||..|+++. .+|||..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 18 ~~~~~~~~~~~il~~L~~~~---~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYE---GGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTST---TGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCC---CChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 44688999999999999877 688999999998778999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
|+.||+++|.|+.+|..|+++|++.|.++.
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 95 CSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999875
No 21
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=7.8e-26 Score=199.31 Aligned_cols=107 Identities=36% Similarity=0.627 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccccc
Q psy245 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKV 154 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~i 154 (566)
+.+++|+..|..|++.|++|+.+|||..|||.. ++| |||++
T Consensus 3 ~~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~p-------------------------------------dY~~i 43 (112)
T 3d7c_A 3 EDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAP-------------------------------------DYYEV 43 (112)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TST-------------------------------------THHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--ccc-------------------------------------CHHHH
Confidence 467899999999999999999999999999964 466 99999
Q ss_pred CCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 155 IKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 155 Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.++.+|..|++.|++.|++++.
T Consensus 44 Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 44 IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998753
No 22
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=204.39 Aligned_cols=107 Identities=32% Similarity=0.595 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhC--CCCCCHHHHHHHHHHHHh
Q psy245 259 LTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA--REYKSSKEFADDVRLIFT 336 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~ef~~Dv~Lif~ 336 (566)
...+++.|..||..|+++. .+|+|.+||+. ++||||++|++||||+||++||++ |.|.++.+|.+||+|||+
T Consensus 18 ~p~~~~~c~~il~~L~~~~---~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~ 91 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHE---MSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 91 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSG---GGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCc---cchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHH
Confidence 4567899999999999876 78999999997 489999999999999999999998 599999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy245 337 NCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371 (566)
Q Consensus 337 Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~ 371 (566)
||+.||+++|.||.+|..|+++|+++|+++..+..
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 92 NCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999876653
No 23
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=1.1e-25 Score=199.66 Aligned_cols=100 Identities=30% Similarity=0.628 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
++.+.|..+|..|..++ .+|||..|||+. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.
T Consensus 16 ~~~~~~~~il~~l~~~~---~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 90 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHK---DSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRK 90 (116)
T ss_dssp CHHHHHHHHHHHHHHST---TCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---CcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999987 678999999998 6899999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHc
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAK 365 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~ 365 (566)
||+++|.++.+|..|+++|++.|.+
T Consensus 91 yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 91 YNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999975
No 24
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=1.7e-25 Score=198.32 Aligned_cols=106 Identities=29% Similarity=0.361 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
......+.|..||+.|.++. .+++|..|||+. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 5 ~~~~l~~~l~~il~~L~~~~---~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKD---PSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSS---GGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCc---ccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45677899999999999876 678999999986 6899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
|+.||+++|.+|.+|..|++.|++.|.....
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987644
No 25
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=9.8e-26 Score=199.88 Aligned_cols=106 Identities=23% Similarity=0.396 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 261 ESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
.+++.|..|+..|..+++ ..++|+|.+||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGG--GCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcc--cCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999875 35799999999976 6999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
|+.||+++|.+|.+|..|+++|++.++++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998743
No 26
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=199.56 Aligned_cols=104 Identities=31% Similarity=0.439 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccc
Q psy245 261 ESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYK 340 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 340 (566)
.+...|..||..|.++. .+|||.+|||+. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+||+.
T Consensus 7 pl~~~l~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKD---TGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLK 81 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---SSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---ccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999987 678999999987 6999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 341 YNPPDHDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 341 yN~~~s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
||+++|.+|.+|..|++.|+..|.++...
T Consensus 82 yN~~~s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 82 YNAKDTIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987543
No 27
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.92 E-value=1.4e-25 Score=210.97 Aligned_cols=113 Identities=26% Similarity=0.391 Sum_probs=100.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCc
Q psy245 71 HRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQD 150 (566)
Q Consensus 71 ~~~~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pd 150 (566)
....+.+.+|+..|..||+.|++++.+|||..|||+..+++| |
T Consensus 13 ~~~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~p-------------------------------------d 55 (166)
T 3fkm_X 13 NLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCP-------------------------------------D 55 (166)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CC-------------------------------------C
T ss_pred cCCCcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCC-------------------------------------C
Confidence 344566789999999999999999999999999998776777 9
Q ss_pred ccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 151 YHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 151 Y~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
||.+|++||||+||++||.+|.|.++.+|+.||+|||.||++||+++|.|+.+|..|++.|++.|.++..
T Consensus 56 Y~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~ 125 (166)
T 3fkm_X 56 YYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGY 125 (166)
T ss_dssp GGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998763
No 28
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=199.55 Aligned_cols=108 Identities=21% Similarity=0.317 Sum_probs=99.9
Q ss_pred CCCcHHHHHHHHHHHHHHHhcC------CCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhcccccccc
Q psy245 74 GRNTNQLAFISKNVLKPVMKHQ------HAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLII 147 (566)
Q Consensus 74 ~~~~~~l~~~~~~v~~~l~~~~------~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~ 147 (566)
...+..|+..|+.||+.|++|+ .+|||..||+. .++|
T Consensus 8 ~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~--~~~p----------------------------------- 50 (123)
T 2dat_A 8 SPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSR--KELP----------------------------------- 50 (123)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCT--TTSC-----------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCc--ccCC-----------------------------------
Confidence 3456899999999999999997 48899999884 3456
Q ss_pred CCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 148 LQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 148 ~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|||++|++||||+||++||+++.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.++++|.
T Consensus 51 --dY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 51 --EYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp --HHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred --CHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999885
No 29
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=200.08 Aligned_cols=106 Identities=38% Similarity=0.689 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
..+.+.|..||..|++++ .+|||..||++. ++||||++|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 9 ~~~~~~c~~il~~l~~~~---~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCE---DSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAK 83 (123)
T ss_dssp -CHHHHHHHHHHHHHTSG---GGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---CcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999999988 678999999998 699999999999999999999999999999999999999999999
Q ss_pred ccCCC-CCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy245 340 KYNPP-DHDVVAMAKKLQDVFETKIAKAPDDV 370 (566)
Q Consensus 340 ~yN~~-~s~v~~~A~~L~~~fe~~~~~~~~~~ 370 (566)
.||++ +|.||.+|..|+++|+++|+++..+.
T Consensus 84 ~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 84 AYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99999999999999999999886543
No 30
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.92 E-value=1.7e-25 Score=203.57 Aligned_cols=105 Identities=35% Similarity=0.631 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Q psy245 259 LTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 338 (566)
+..+.+.|..||..|++++ .+|||..|||.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 19 ~~~l~~~~~~il~~l~~~~---~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 93 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCE---DSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNS 93 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSG---GGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC---CChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4578899999999999988 588999999986 79999999999999999999999999999999999999999999
Q ss_pred cccCCC-CCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 339 YKYNPP-DHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 339 ~~yN~~-~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
+.||++ +|.||.+|..|+++|++.|.++..
T Consensus 94 ~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 94 KAYTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 999999999999999999998643
No 31
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=2.3e-25 Score=200.35 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy245 259 LTESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIF 335 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 335 (566)
.....+.|..+++.|..+++ ..++|||.+||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34567788999999988764 45799999999988 69999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 336 TNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 336 ~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
+||+.||+++|.+|.+|..|+++|++.|.++.
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 32
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=199.99 Aligned_cols=110 Identities=24% Similarity=0.371 Sum_probs=99.7
Q ss_pred cchHHHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHH
Q psy245 257 PKLTESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRL 333 (566)
Q Consensus 257 ~~~~~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~L 333 (566)
.....+..+|..+++.|....+ ..++|||.+||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|
T Consensus 13 ~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (130)
T 3k2j_A 13 LGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNL 90 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3455667788888888887664 35799999999987 799999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 334 IFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 334 if~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
||.||+.||+++|.||.+|..|+++|+++|+++..
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998753
No 33
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.92 E-value=3.3e-25 Score=197.41 Aligned_cols=111 Identities=28% Similarity=0.482 Sum_probs=103.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHh-cCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCc
Q psy245 72 RPGRNTNQLAFISKNVLKPVMK-HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQD 150 (566)
Q Consensus 72 ~~~~~~~~l~~~~~~v~~~l~~-~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pd 150 (566)
+......+|...|..++..|++ ++.+|||..|||+..+++| |
T Consensus 4 ~~~~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~p-------------------------------------d 46 (119)
T 3p1f_A 4 KKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIP-------------------------------------D 46 (119)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCT-------------------------------------T
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCC-------------------------------------C
Confidence 3345677899999999999998 7799999999998766777 9
Q ss_pred ccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 151 YHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 151 Y~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
||++|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.+.++.
T Consensus 47 Y~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 47 YFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998764
No 34
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.91 E-value=5.1e-25 Score=197.20 Aligned_cols=104 Identities=36% Similarity=0.433 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
......+.|..+|..|..+. .+++|..|||+. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 10 ~~~p~~~~l~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (123)
T 3hme_A 10 ESTPIQQLLEHFLRQLQRKD---PHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDN 84 (123)
T ss_dssp -CCHHHHHHHHHHHHHHTTC---TTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC---ccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 34466788999999999877 567999999987 6899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKA 366 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~ 366 (566)
|+.||+++|.+|.+|..|++.|++.|.+.
T Consensus 85 a~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 85 AMTYNRPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 35
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=5.3e-25 Score=196.49 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=99.6
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
....|+..|+.||+.|++|+.+|||..|||.. ++| |||++|
T Consensus 4 ~~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~p-------------------------------------dY~~iI 44 (121)
T 2d9e_A 4 GSSGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVP-------------------------------------DYLDHI 44 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCT-------------------------------------THHHHC
T ss_pred cccHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccC-------------------------------------CHHHHc
Confidence 34578899999999999999999999999964 466 999999
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
++||||+||++||++|.|.++.+|..||+|||.||++||+++|.++.+|..|++.|+..|.++..
T Consensus 45 k~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 45 KKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp SSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765
No 36
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.91 E-value=2.9e-25 Score=198.03 Aligned_cols=109 Identities=40% Similarity=0.732 Sum_probs=100.3
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCC---CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCc
Q psy245 74 GRNTNQLAFISKNVLKPVMKHQH---AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQD 150 (566)
Q Consensus 74 ~~~~~~l~~~~~~v~~~l~~~~~---~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pd 150 (566)
+..+.+++ .|..||..|++++. +|||..|||...+++| |
T Consensus 5 ~~~~~~l~-~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~p-------------------------------------d 46 (120)
T 3jvl_A 5 SKISEQLK-CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLH-------------------------------------D 46 (120)
T ss_dssp CSSCHHHH-HHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCT-------------------------------------T
T ss_pred hhhHHHHH-HHHHHHHHHHhCcCccccchhcCCCCchhcCCC-------------------------------------C
Confidence 34455555 45679999999988 9999999998887777 9
Q ss_pred ccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 151 YHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 151 Y~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
||++|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.|.+++.
T Consensus 47 Y~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 47 YCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 37
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.91 E-value=4.1e-25 Score=197.07 Aligned_cols=108 Identities=25% Similarity=0.364 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHhccC---CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy245 259 LTESLKYCNEILKELFSKKH---SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIF 335 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 335 (566)
...+.+.|..++..|...++ ..++++|.+||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 34667889999999988765 34689999999987 79999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 336 TNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 336 ~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
+||+.||+++|.||.+|..|+++|+++|++++.
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998753
No 38
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=193.40 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=100.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccccc
Q psy245 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKV 154 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~i 154 (566)
.....|+..|..|++.|++++.+|+|..||+. .++| |||++
T Consensus 4 ~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~--~~~p-------------------------------------dY~~i 44 (117)
T 2i7k_A 4 VEQTPLQEALNQLMRQLQRKDPSAFFSFPVTD--FIAP-------------------------------------GYSMI 44 (117)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCT--TTSS-------------------------------------SHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcccHHhcCCCCc--cccC-------------------------------------CHHHH
Confidence 45678999999999999999999999999995 3466 99999
Q ss_pred CCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 155 IKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 155 Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.+....-
T Consensus 45 Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 45 IKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp CSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987653
No 39
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=197.80 Aligned_cols=106 Identities=33% Similarity=0.503 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
++..+...|..+|..|..++ .+|+|..||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 10 ~~~~l~~~l~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKD---PARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDN 84 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTC---TTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCC---cchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 44567889999999999987 678999999998 7999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
|+.||+++|.+|.+|..|++.|++.|.++..
T Consensus 85 a~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 85 CMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997643
No 40
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=6.1e-25 Score=199.93 Aligned_cols=109 Identities=27% Similarity=0.444 Sum_probs=100.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccc
Q psy245 73 PGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYH 152 (566)
Q Consensus 73 ~~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~ 152 (566)
+......|+..|..||+.|++|+.+|||..|||. .++| |||
T Consensus 15 ~~~~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~--~~~p-------------------------------------dY~ 55 (135)
T 3mb3_A 15 QSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDL--LEYP-------------------------------------DYR 55 (135)
T ss_dssp --CCSSTHHHHHHHHHHHHHHSGGGGGGSSCCCT--TTST-------------------------------------THH
T ss_pred CCcCHHHHHHHHHHHHHHHHhCCCChhhcCCCCh--hhCC-------------------------------------CHH
Confidence 3445568999999999999999999999999996 3466 999
Q ss_pred ccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCC-CCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 153 KVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP-GEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 153 ~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~-~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
++|++||||+||++||++|.|.++++|..||+|||.||++||++ +|.|+.+|..|++.|++.|..+..
T Consensus 56 ~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 56 DIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 899999999999999999998765
No 41
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.91 E-value=8.6e-25 Score=195.18 Aligned_cols=100 Identities=38% Similarity=0.602 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCCCCH
Q psy245 82 FISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161 (566)
Q Consensus 82 ~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~PMdL 161 (566)
..|..|++.|++|+.+|||..|||.. ++| |||++|++||||
T Consensus 16 ~~~~~il~~l~~~~~a~~F~~pvd~~--~~p-------------------------------------dY~~iIk~PmdL 56 (121)
T 1e6i_A 16 AAIQNILTELQNHAAAWPFLQPVNKE--EVP-------------------------------------DYYDFIKEPMDL 56 (121)
T ss_dssp HHHHHHHHHHHHSTTCGGGSSCCCTT--TST-------------------------------------THHHHCSSCCCH
T ss_pred HHHHHHHHHHHcCCCchhhCCCCChh--hCc-------------------------------------CHHHHcCCCCCH
Confidence 45778999999999999999999964 466 999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 162 ~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
+||++||++|.|.++.+|..||+|||.||++||+++|.++.+|..|++.|++.+.++|.
T Consensus 57 ~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 57 STMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 42
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.91 E-value=7.1e-25 Score=196.34 Aligned_cols=109 Identities=27% Similarity=0.446 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccc
Q psy245 74 GRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHK 153 (566)
Q Consensus 74 ~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~ 153 (566)
++....|+..|..||+.|++|+.+|||..||+.. .+| |||.
T Consensus 5 ~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~p-------------------------------------dY~~ 45 (123)
T 3q2e_A 5 NYVESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYP-------------------------------------DYRD 45 (123)
T ss_dssp -----CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCT-------------------------------------THHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcC-------------------------------------CHHH
Confidence 4466789999999999999999999999999964 356 9999
Q ss_pred cCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCC-CCHHHHHHHHHHHHHHHHhhhhccc
Q psy245 154 VIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP-GEDVVVMAQTLEKLFLTKVSARRES 221 (566)
Q Consensus 154 iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~-~s~i~~~A~~L~~~f~~~~~~~~~~ 221 (566)
+|++||||+||++||++|.|.++++|+.||+|||.||++||++ +|.|+.+|..|++.|++.|.++...
T Consensus 46 ~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 46 IIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp HCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996 9999999999999999999998763
No 43
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.91 E-value=1.7e-24 Score=195.39 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=100.4
Q ss_pred CCCcHHHHHHHHHHHHHHHhcC-------CCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccc
Q psy245 74 GRNTNQLAFISKNVLKPVMKHQ-------HAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLI 146 (566)
Q Consensus 74 ~~~~~~l~~~~~~v~~~l~~~~-------~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~ 146 (566)
+..+..|+..|..||+.|++++ .+|||..||+. .++|
T Consensus 6 ~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~--~~~p---------------------------------- 49 (129)
T 2grc_A 6 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELP---------------------------------- 49 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCH----------------------------------
T ss_pred CCCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc--ccCC----------------------------------
Confidence 4556789999999999999986 47889999884 3456
Q ss_pred cCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q psy245 147 ILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESG 222 (566)
Q Consensus 147 ~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 222 (566)
|||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.++.+|..|++.|++.+++++...
T Consensus 50 ---dY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 122 (129)
T 2grc_A 50 ---EYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKED 122 (129)
T ss_dssp ---HHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987643
No 44
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.90 E-value=1.9e-24 Score=192.71 Aligned_cols=107 Identities=27% Similarity=0.420 Sum_probs=98.0
Q ss_pred CCcHHHHHHHHHHHHHHHhcCC------CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccC
Q psy245 75 RNTNQLAFISKNVLKPVMKHQH------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIIL 148 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~------~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~ 148 (566)
..++.|+..|+.|++.|.++.+ ++||..||+. .++|
T Consensus 4 ~~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~--~~~p------------------------------------ 45 (120)
T 3ljw_A 4 SSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSK--VQYP------------------------------------ 45 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCT--TTCH------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCc--ccCC------------------------------------
Confidence 4578999999999999999988 7777777663 2344
Q ss_pred CcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 149 QDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 149 pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
|||.+|++||||+||++||.+|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.|++++.
T Consensus 46 -dY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 46 -DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp -HHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 45
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=195.51 Aligned_cols=108 Identities=31% Similarity=0.485 Sum_probs=99.3
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccc
Q psy245 74 GRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHK 153 (566)
Q Consensus 74 ~~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~ 153 (566)
++.+...+..|..||..|++|+.+|||..||+. ++| |||+
T Consensus 15 ~~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~p-------------------------------------dY~~ 54 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVP-------------------------------------DYYK 54 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TST-------------------------------------THHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCC-------------------------------------CHHH
Confidence 345666777888999999999999999999985 467 9999
Q ss_pred cCCCCCCHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q psy245 154 VIKHPMDLGTIKKRLEN--FYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRES 221 (566)
Q Consensus 154 iIk~PMdL~tI~~kL~~--~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 221 (566)
+|++||||+||++||++ +.|.++.+|.+||+|||.||++||+++|.|+.+|..|++.|++.|.++...
T Consensus 55 iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 55 IIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp HCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998 599999999999999999999999999999999999999999999998753
No 46
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.90 E-value=1.5e-24 Score=192.25 Aligned_cols=100 Identities=33% Similarity=0.599 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCCC
Q psy245 79 QLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHP 158 (566)
Q Consensus 79 ~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~P 158 (566)
++...|..||+.|++|+.+|||..|||.. .+| |||.+|++|
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~p-------------------------------------dY~~~I~~P 56 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAP-------------------------------------NYYQIIKAP 56 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TST-------------------------------------THHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChh--hcc-------------------------------------ChHHHcCCC
Confidence 35566778999999999999999999965 356 999999999
Q ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy245 159 MDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSA 217 (566)
Q Consensus 159 MdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 217 (566)
|||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.|.+
T Consensus 57 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 57 MDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998864
No 47
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.90 E-value=3.5e-24 Score=192.12 Aligned_cols=106 Identities=25% Similarity=0.328 Sum_probs=96.3
Q ss_pred CCcHHHHHHHHHHHHHHHhcCC------CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccC
Q psy245 75 RNTNQLAFISKNVLKPVMKHQH------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIIL 148 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~------~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~ 148 (566)
+....|+..|+.|++.|+++.+ +|||..||+.. ++|
T Consensus 11 k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~p------------------------------------ 52 (124)
T 3mb4_A 11 KYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELP------------------------------------ 52 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCH------------------------------------
T ss_pred ccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccC------------------------------------
Confidence 3455899999999999999554 58888888743 355
Q ss_pred CcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 149 QDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 149 pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
|||++|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.|+++.
T Consensus 53 -dY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 53 -DYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp -HHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 48
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.90 E-value=4.7e-24 Score=190.93 Aligned_cols=103 Identities=27% Similarity=0.403 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
..++.+|..|++.|++++.+|||..||+.. .+| |||++|++
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~p-------------------------------------dY~~iIk~ 52 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAP-------------------------------------GYSMIIKH 52 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TST-------------------------------------THHHHCSS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hcc-------------------------------------CHHHHCCC
Confidence 357889999999999999999999999964 356 99999999
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|.+.|.+..
T Consensus 53 PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 53 PMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987643
No 49
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=3.4e-24 Score=198.43 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHhccC----CCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q psy245 261 ESLKYCNEILKELFSKKH----SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFT 336 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~----~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~ 336 (566)
....+|..|+..|+...+ ..++++|..||+.. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 346788899999988764 34689999999987 799999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy245 337 NCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370 (566)
Q Consensus 337 Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~ 370 (566)
||+.||+++|.||.+|..|+++|+++|.++...+
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999987553
No 50
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=6.1e-24 Score=201.53 Aligned_cols=103 Identities=35% Similarity=0.631 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
....+.|..||..|..++ .+|||.+|||+. ++|+||++|++||||+||++||++|.|.++.+|.+||+|||+||+
T Consensus 71 ~~~~~~l~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHK---MAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR 145 (174)
T ss_dssp HHHHHHHHHHHHHHHTSG---GGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---hhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 456788999999999887 788999999987 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
.||+++|.+|.+|..|+++|+++|++++
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998875
No 51
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.90 E-value=7e-24 Score=192.92 Aligned_cols=104 Identities=32% Similarity=0.431 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
..|+.+|..||+.|++|+.+|||..||+.. ++| |||.+|++
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~p-------------------------------------dY~~iI~~ 52 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVP-------------------------------------DYLDHIKH 52 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCT-------------------------------------THHHHCSS
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcC-------------------------------------CHHHHhCC
Confidence 468999999999999999999999999964 456 99999999
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|.+.|.++..
T Consensus 53 PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 53 PMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp CCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998754
No 52
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=8.4e-24 Score=197.03 Aligned_cols=109 Identities=28% Similarity=0.546 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHHHHHhcc--CCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy245 258 KLTESLKYCNEILKELFSKK--HSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIF 335 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~--~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif 335 (566)
.+......|..||..+...+ ....+|||..||+.. .+||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 22 ~~~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 22 SMDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34456778888888887643 335799999999987 69999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 336 TNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 336 ~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
.||+.||+++|.||.+|..|+++|++.|.++..
T Consensus 100 ~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 100 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998854
No 53
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=191.09 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHHHHhcCC------CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCc
Q psy245 77 TNQLAFISKNVLKPVMKHQH------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQD 150 (566)
Q Consensus 77 ~~~l~~~~~~v~~~l~~~~~------~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pd 150 (566)
+..|+..|+.|++.|+++.+ +|||..||+.. ++| |
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~p-------------------------------------d 47 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNA-------------------------------------D 47 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCT-------------------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCC-------------------------------------C
Confidence 45788999999999999876 78888888753 355 9
Q ss_pred ccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 151 YHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 151 Y~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
||++|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.+.++..
T Consensus 48 Y~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 48 YYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988654
No 54
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.89 E-value=4.5e-24 Score=180.01 Aligned_cols=85 Identities=78% Similarity=1.208 Sum_probs=80.2
Q ss_pred CCCCCccccCCCCCHHHHHHHHHhccCCCCcchHHHHHHHHhhCCCCCCCCCCcEEEeCCCCChHHHHHHHHHHHHHhcc
Q psy245 481 MNDESDEESSKPMSYFEKQELSLDINKLPGKKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPSTLRELEKYVATCLRK 560 (566)
Q Consensus 481 ~~~s~~e~~~~pmT~eEK~~Ls~~I~~Lp~e~L~~Vv~II~~~~p~~~~~~~dEiEiDid~L~~~tLr~L~~yV~~cL~k 560 (566)
..|+.++..+++||++||++|+.+|++||+++|.+||+||++++|++.+.+++|||||||+|++.|||+|++||.+||++
T Consensus 6 ~~d~~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~ 85 (90)
T 2jns_A 6 SGESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRK 85 (90)
T ss_dssp CCCTTTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCC
T ss_pred CCcCCCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 45777888999999999999999999999999999999999999999777889999999999999999999999999999
Q ss_pred CCCCCC
Q psy245 561 KPRKPN 566 (566)
Q Consensus 561 k~~kp~ 566 (566)
| |||.
T Consensus 86 k-~k~~ 90 (90)
T 2jns_A 86 K-RKPQ 90 (90)
T ss_dssp C-CCCC
T ss_pred h-cCCC
Confidence 8 9985
No 55
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=189.91 Aligned_cols=108 Identities=27% Similarity=0.357 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHHHHHHHhcCC------CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccC
Q psy245 75 RNTNQLAFISKNVLKPVMKHQH------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIIL 148 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~------~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~ 148 (566)
.....|...|+.|++.|.++.+ +|||..||+. .++|
T Consensus 13 ~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~--~~~P------------------------------------ 54 (130)
T 3k2j_A 13 LGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSK--KKYP------------------------------------ 54 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCT--TTCH------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCCh--hhCc------------------------------------
Confidence 3456888899999999999876 8888888874 3455
Q ss_pred CcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q psy245 149 QDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRES 221 (566)
Q Consensus 149 pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 221 (566)
|||++|++||||+||++||+++.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.|+++...
T Consensus 55 -dY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 55 -DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp -HHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998753
No 56
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=186.95 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcCC------CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccc
Q psy245 80 LAFISKNVLKPVMKHQH------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHK 153 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~------~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~ 153 (566)
....|+.|++.|+++.+ +|||..||+. .++| |||.
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~--~~~p-------------------------------------dY~~ 46 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR--RNQP-------------------------------------DYYE 46 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG--GGCH-------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc--ccCC-------------------------------------CHHH
Confidence 44567889999999865 7888888774 3355 9999
Q ss_pred cCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 154 VIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 154 iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
+|++||||+||++||++|.|.++++|..||+|||.||++||+++|.++.+|..|++.|++.++++..
T Consensus 47 iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 47 VVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998865
No 57
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.88 E-value=6.4e-23 Score=196.23 Aligned_cols=105 Identities=32% Similarity=0.599 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhC--CCCCCHHHHHHHHHHH
Q psy245 257 PKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA--REYKSSKEFADDVRLI 334 (566)
Q Consensus 257 ~~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~--~~Y~s~~ef~~Dv~Li 334 (566)
.....+.+.|..||..|+.+. .+++|..||+. ++|+||++|++||||+||++||++ |.|.++.+|.+||+||
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~---~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li 150 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHE---MSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLI 150 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHST---TCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhch---hhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 345678899999999999987 67899999996 489999999999999999999998 7999999999999999
Q ss_pred HhcccccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 335 FTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 335 f~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
|+||+.||+++|.||.+|..|+++|+++|+++.
T Consensus 151 ~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 151 FQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998763
No 58
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.88 E-value=2.4e-23 Score=193.99 Aligned_cols=105 Identities=32% Similarity=0.575 Sum_probs=96.8
Q ss_pred cHHHHHHHHHHHHH-HHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 77 TNQLAFISKNVLKP-VMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 77 ~~~l~~~~~~v~~~-l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
..+|..+|+.|+.. |+.++.+|||..||+.. .+| |||.+|
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~P-------------------------------------dY~~iI 67 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVP-------------------------------------DYYKVI 67 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TST-------------------------------------THHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcc-------------------------------------cHHHHc
Confidence 45778888887765 88899999999999964 356 999999
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
++||||+||++||++|.|.++.+|..||+|||.||++||+++|.|+.+|..|...|.+.|.++..
T Consensus 68 k~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 68 VNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp SSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 59
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.88 E-value=8.6e-23 Score=184.49 Aligned_cols=100 Identities=32% Similarity=0.457 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
......|..+|..|..++ .+|||..|||+. ++||||++|++||||+||++||++|.|.++.+|.+||+|||+||+
T Consensus 9 ~~l~~~l~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDK---RFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNAL 83 (130)
T ss_dssp HHHHHHHHHHHHHHHTSG---GGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---ccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 345667888898888877 688999999998 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHH----HHHHHHHHHHHHHHHH
Q psy245 340 KYNPPDHDV----VAMAKKLQDVFETKIA 364 (566)
Q Consensus 340 ~yN~~~s~v----~~~A~~L~~~fe~~~~ 364 (566)
.||+++|++ +.+|..|++.+...+.
T Consensus 84 ~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 84 EYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999866 7899999999999986
No 60
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.88 E-value=7.9e-23 Score=193.87 Aligned_cols=105 Identities=36% Similarity=0.601 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
.+......|+.||+.|++|+.+|||..|||.. ++| |||++|
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~p-------------------------------------dY~~~I 109 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAP-------------------------------------DYYGVI 109 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCH-------------------------------------HHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCC-------------------------------------chHHHh
Confidence 34566677889999999999999999999964 466 999999
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
++||||+||++||++|.|.++.+|.+||+|||+||++||+++|.++.+|..|++.|++.|++++
T Consensus 110 ~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 110 KEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp SSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 61
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.87 E-value=5.8e-23 Score=197.07 Aligned_cols=103 Identities=25% Similarity=0.410 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhcc--CCCChHHHHHHhhCC---CCCCHHHHHHHHH
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIK--KPMDLGTVKAKMDAR---EYKSSKEFADDVR 332 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk--~PMDL~tIk~kL~~~---~Y~s~~ef~~Dv~ 332 (566)
.....++.|..||..|+.+. .+|||.+||+ |+||++|+ +||||+||++||++| .|.++++|.+||+
T Consensus 73 m~~~~~~~c~~iL~~l~~~~---~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~ 143 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHE---PCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVG 143 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHST---THHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCc---cchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 44567889999999999976 7899999998 57999998 899999999999999 9999999999999
Q ss_pred HHHhcccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q psy245 333 LIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370 (566)
Q Consensus 333 Lif~Na~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~ 370 (566)
|||+||++|| +++.+|.+|..|+++|+++|+++..+.
T Consensus 144 Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 144 RMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999 589999999999999999999987764
No 62
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.87 E-value=2e-22 Score=182.12 Aligned_cols=100 Identities=25% Similarity=0.397 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
.+|+.+|+.|++.|++|+.+|||..|||.. ++| |||.+|++
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~p-------------------------------------dY~~iI~~ 49 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVP-------------------------------------DYVTVIKQ 49 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCT-------------------------------------THHHHCSS
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcC-------------------------------------CHHHHcCC
Confidence 578889999999999999999999999965 356 99999999
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHH----HHHHHHHHHHHHHHhh
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDV----VVMAQTLEKLFLTKVS 216 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i----~~~A~~L~~~f~~~~~ 216 (566)
||||+||++||.+|.|.++++|..||+|||.||++||+++|.+ +.+|..|+..+...+.
T Consensus 50 PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 50 PMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 7889999999988886
No 63
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=179.82 Aligned_cols=98 Identities=37% Similarity=0.555 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
.+.++...|..||..|..++ .+|||.+| +||||++|++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 9 ~~~~L~~~~~~il~~l~~~~---~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~N 78 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDK---RFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSN 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSG---GGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc---cchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34566678999999999987 67899998 699999999999999999999999999999999999999999
Q ss_pred ccccCCCCCH----HHHHHHHHHHHHHHHHHc
Q psy245 338 CYKYNPPDHD----VVAMAKKLQDVFETKIAK 365 (566)
Q Consensus 338 a~~yN~~~s~----v~~~A~~L~~~fe~~~~~ 365 (566)
|+.||+++|+ |+.+|..|++.|...++.
T Consensus 79 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 79 ALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp HHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 679999999999999863
No 64
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.86 E-value=1.4e-22 Score=187.67 Aligned_cols=102 Identities=28% Similarity=0.301 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCC-------CCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccc
Q psy245 80 LAFISKNVLKPVMKHQH-------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYH 152 (566)
Q Consensus 80 l~~~~~~v~~~l~~~~~-------~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~ 152 (566)
-...|+.|++.|+++.+ ++||..||+ +..+||||
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~---------------------------------------~~~~pdY~ 65 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPS---------------------------------------KKDYPDYY 65 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCC---------------------------------------TTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCc---------------------------------------hhhCcCHH
Confidence 35677888888888765 555555555 44455999
Q ss_pred ccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 153 KVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 153 ~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
++|++||||+||++||++|.|.++++|+.||+|||.||++||+++|.|+.+|..|++.|++.|.++..
T Consensus 66 ~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 66 KIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 65
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.2e-22 Score=177.65 Aligned_cols=99 Identities=25% Similarity=0.430 Sum_probs=92.2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccccc
Q psy245 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKV 154 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~i 154 (566)
....+|+.+|..|++.|++|+.+|||..| +| |||++
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~p-------------------------------------dY~~i 43 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKRFNIFSKP-------VS-------------------------------------DYLEV 43 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CS-------------------------------------SCTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCccchhhcCc-------Cc-------------------------------------cHHhH
Confidence 44578999999999999999999999999 57 99999
Q ss_pred CCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCH----HHHHHHHHHHHHHHHhhh
Q psy245 155 IKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGED----VVVMAQTLEKLFLTKVSA 217 (566)
Q Consensus 155 Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~----i~~~A~~L~~~f~~~~~~ 217 (566)
|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|. |+.+|..|++.|...++.
T Consensus 44 Ik~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 44 IKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp CSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 678999999999988853
No 66
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.86 E-value=6.5e-22 Score=192.72 Aligned_cols=106 Identities=36% Similarity=0.630 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhC---CCCCCHHHHHHHHHHH
Q psy245 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA---REYKSSKEFADDVRLI 334 (566)
Q Consensus 258 ~~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~---~~Y~s~~ef~~Dv~Li 334 (566)
....+.+.|..||..|+.++ .+|||.+||+. ++|+||++|++||||+||++||++ |.|.++.+|.+||+||
T Consensus 78 ls~~~~~~c~~il~~l~~~~---~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li 151 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHE---LSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLI 151 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTST---TCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---chhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHH
Confidence 44677899999999999887 78899999987 489999999999999999999997 7999999999999999
Q ss_pred HhcccccCC-----------------CCCHHHHHHHHHHHHHHHHHHcCCCC
Q psy245 335 FTNCYKYNP-----------------PDHDVVAMAKKLQDVFETKIAKAPDD 369 (566)
Q Consensus 335 f~Na~~yN~-----------------~~s~v~~~A~~L~~~fe~~~~~~~~~ 369 (566)
|+||+.||+ +++.|+.+|..|+.+|+++|+++..+
T Consensus 152 ~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 152 FKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999 99999999999999999999998654
No 67
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.86 E-value=7.3e-22 Score=188.89 Aligned_cols=105 Identities=32% Similarity=0.511 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCccccc
Q psy245 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKV 154 (566)
Q Consensus 75 ~~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~i 154 (566)
.....++..|..||..|+.|+.+|||..||+. ++| |||++
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~p-------------------------------------dY~~i 116 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVP-------------------------------------DYYKI 116 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TST-------------------------------------THHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCC-------------------------------------chhhh
Confidence 45678888999999999999999999999983 366 99999
Q ss_pred CCCCCCHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhc
Q psy245 155 IKHPMDLGTIKKRLEN--FYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARR 219 (566)
Q Consensus 155 Ik~PMdL~tI~~kL~~--~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 219 (566)
|++||||+||++||++ +.|.++.+|++||+|||+||++||+++|.|+.+|..|++.|++.|+++.
T Consensus 117 Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 117 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998 7999999999999999999999999999999999999999999998864
No 68
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=9.9e-22 Score=198.38 Aligned_cols=105 Identities=29% Similarity=0.557 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcc
Q psy245 259 LTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338 (566)
Q Consensus 259 ~~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na 338 (566)
...+...|..||..|.+++ .+|||..||+.. .+||||++|++||||+||++||++|.|.++.+|.+||+|||+||
T Consensus 12 ~~~l~~~l~~il~~l~~~~---~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLP---NTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNS 86 (265)
T ss_dssp HHHHHHHHHHHHHHHHTST---TCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---CchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhh
Confidence 4577889999999999987 678999999998 58999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q psy245 339 YKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368 (566)
Q Consensus 339 ~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~ 368 (566)
+.||+++|.|+.+|..|+++|++.|.++..
T Consensus 87 ~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 87 ATYNGPKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998754
No 69
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.84 E-value=9.2e-22 Score=188.71 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=93.6
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
....-+..|..||..|+.|+.+|||.+||+ | +||.+|
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~-------------------------------------~Yy~iI 109 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT------D-------------------------------------STFSLD 109 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------C-------------------------------------TTCSSS
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC------h-------------------------------------hhhccc
Confidence 344555678889999999999999999998 4 999999
Q ss_pred C--CCCCHHHHHHHhhcc---CCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q psy245 156 K--HPMDLGTIKKRLENF---YYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRES 221 (566)
Q Consensus 156 k--~PMdL~tI~~kL~~~---~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 221 (566)
+ +||||+||++||+++ .|.++++|++||+|||+||++|| +++.++.+|..|++.|++.|+++...
T Consensus 110 k~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 110 QPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp CSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 8 899999999999999 99999999999999999999999 48888999999999999999998764
No 70
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=4.1e-21 Score=196.34 Aligned_cols=103 Identities=28% Similarity=0.543 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhccc
Q psy245 260 TESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCY 339 (566)
Q Consensus 260 ~~~~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 339 (566)
......|..||..|.++. .+|||.+||+.. .+||||++|++||||+||++||++|.|.++.+|.+||+|||+||+
T Consensus 46 ~~l~~~~~~il~~l~~~~---~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~ 120 (292)
T 3aad_A 46 VTLSSILESIINDMRDLP---NTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSA 120 (292)
T ss_dssp HHHHHHHHHHHHHHSSST---TCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---cchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHH
Confidence 445678999999999876 789999999998 689999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHcCC
Q psy245 340 KYNPPDHDVVAMAKKLQDVFETKIAKAP 367 (566)
Q Consensus 340 ~yN~~~s~v~~~A~~L~~~fe~~~~~~~ 367 (566)
.||+++|.++.+|..|+++|++.|+++.
T Consensus 121 ~yN~~~s~i~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 121 TYNGPKHSLTQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp HHTCSSSHHHHHHTHHHHTTTTTGGGSH
T ss_pred HHcCCchHHHHHHHHHHHHHHhhhhcch
Confidence 9999999999999999999999998764
No 71
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.83 E-value=8.3e-21 Score=184.88 Aligned_cols=105 Identities=27% Similarity=0.445 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
....++..|..||..|++|+.+|||..||+. ++| |||.+|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~p-------------------------------------dY~~iI 117 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIP-------------------------------------NYYKII 117 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TST-------------------------------------THHHHC
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhc-------------------------------------cHhHHh
Confidence 4567778889999999999999999999984 466 999999
Q ss_pred CCCCCHHHHHHHhhc---cCCCCHHHHHHHHHHhhhhccccCC-----------------CCCHHHHHHHHHHHHHHHHh
Q psy245 156 KHPMDLGTIKKRLEN---FYYWSGKEAISDFNTMFTNCYVYNK-----------------PGEDVVVMAQTLEKLFLTKV 215 (566)
Q Consensus 156 k~PMdL~tI~~kL~~---~~Y~s~~ef~~Dv~lif~N~~~yN~-----------------~~s~i~~~A~~L~~~f~~~~ 215 (566)
++||||+||++||++ |.|.++++|..||+|||+||++||+ +++.++++|..|+..|++.|
T Consensus 118 k~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~ 197 (207)
T 3u5n_A 118 KKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKL 197 (207)
T ss_dssp SSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHH
Confidence 999999999999997 7999999999999999999999999 99999999999999999999
Q ss_pred hhhcc
Q psy245 216 SARRE 220 (566)
Q Consensus 216 ~~~~~ 220 (566)
+++.+
T Consensus 198 ~~~~p 202 (207)
T 3u5n_A 198 TEIYS 202 (207)
T ss_dssp HHHST
T ss_pred HHhCC
Confidence 98764
No 72
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=162.87 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=101.8
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccC
Q psy245 76 NTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVI 155 (566)
Q Consensus 76 ~~~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iI 155 (566)
.+..++.+++.|++.|++|.+. .||.+++.|+.||+++ |+||.
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De---------------------------------~GR~lsd~F~~LPsk~--pdYY~-- 46 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDD---------------------------------EGRCYSDSLAEIPAVD--PNFPN-- 46 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCT---------------------------------TSCBGGGGGTTCCSSC--TTSTT--
T ss_pred HHHHHHHHHHHHHHHHHhhcCC---------------------------------CCCcchHHHhHCCCCC--ccccC--
Confidence 3457889999999999999886 2788999999999998 79998
Q ss_pred CCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q psy245 156 KHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESG 222 (566)
Q Consensus 156 k~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 222 (566)
++||+|.+|++||.+|.|+++++|..||.+||+||++||.++|.||.+|..|+.+|.+...++-..+
T Consensus 47 k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 47 KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999886543
No 73
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.77 E-value=2.2e-19 Score=184.75 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=68.3
Q ss_pred CCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy245 148 LQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSA 217 (566)
Q Consensus 148 ~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 217 (566)
+||||++|++||||+||++||++|.|.++.+|..||+|||+||++||+++|.|+.+|..|++.|++.|++
T Consensus 193 ~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 262 (311)
T 2r0y_A 193 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 262 (311)
T ss_dssp CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999999999999999999999999999999999999999999998
No 74
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.76 E-value=3.9e-19 Score=186.71 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=71.8
Q ss_pred hccccccccCCcccccCCCCCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy245 139 ALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSA 217 (566)
Q Consensus 139 f~~lP~~~~~pdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 217 (566)
|..++....+||||++|++||||+||++||++|.|.++.+|..||+|||+||++||+++|.||.+|..|+..|+..|.+
T Consensus 234 F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 312 (361)
T 2r10_A 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312 (361)
T ss_dssp GSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333333345599999999999999999999999999999999999999999999999999999999999999999998
No 75
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.72 E-value=8.6e-18 Score=152.58 Aligned_cols=105 Identities=11% Similarity=0.230 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHhccCC---CCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q psy245 261 ESLKYCNEILKELFSKKHS---SYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337 (566)
Q Consensus 261 ~~~k~c~~iL~~l~~~~~~---~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~N 337 (566)
.....+..|+..++.+++. .++.+|.+.++.. |+||+ ++||+|.+|++||+.|.|+++++|..||.|||+|
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3455678888899888754 5788999998876 78998 9999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy245 338 CYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371 (566)
Q Consensus 338 a~~yN~~~s~v~~~A~~L~~~fe~~~~~~~~~~~ 371 (566)
|++||.+||.||.+|..|+++|.+.+.++.....
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999866533
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.44 E-value=1.3e-13 Score=130.83 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhccCCCCCcCcccCCCccccCCCchhhhccCCCChHHHHHHhhCCCCCCHHHHHHHHHHHHhcccccC
Q psy245 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342 (566)
Q Consensus 263 ~k~c~~iL~~l~~~~~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 342 (566)
.....+||..|..++ .+|||+.. .++.||||.||++||+.|.|.++.+|.+||+|||.||..||
T Consensus 77 ~~~l~~vl~~L~~~~---~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 77 QISLKQVLTALLNSR---TTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHTCH---HHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc---ccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 445678899888876 67898662 14999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy245 343 PPDHDVVAMAKKLQDVFETKIAKAPDDVP 371 (566)
Q Consensus 343 ~~~s~v~~~A~~L~~~fe~~~~~~~~~~~ 371 (566)
.+++++..++..|+.+|+++++++.++..
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988864
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.40 E-value=1.8e-13 Score=129.80 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccccCCchhHHHHHHHHHHHHhhhhhhhhhhhhhccccccccCCcccccCCC
Q psy245 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKH 157 (566)
Q Consensus 78 ~~l~~~~~~v~~~l~~~~~~~~f~~pv~~~~~~~p~~~~~~~~~~~~~l~~~~~~r~~~~~f~~lP~~~~~pdY~~iIk~ 157 (566)
..|+..+..||+.|..|+.+|||. .|. ++.
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~------------------------------------------------~y~--~k~ 103 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLL------------------------------------------------RYR--QQQ 103 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHH------------------------------------------------TCC--C--
T ss_pred HHHHHHHHHHHHHHHhccccHhhh------------------------------------------------hhh--hcC
Confidence 466777888999999998887663 332 599
Q ss_pred CCCHHHHHHHhhccCCCCHHHHHHHHHHhhhhccccCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q psy245 158 PMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220 (566)
Q Consensus 158 PMdL~tI~~kL~~~~Y~s~~ef~~Dv~lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 220 (566)
||||.+|++||++|.|.++.+|+.||.|||+||..||+.++.+.+++..|+.+|++.|+++-+
T Consensus 104 PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfp 166 (183)
T 3lqh_A 104 PLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFP 166 (183)
T ss_dssp CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999998765
No 78
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.53 E-value=0.019 Score=49.67 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhccCCCCc-chHHHHHHHHhhCCCCCCCCCCcEEEeCCCCChHHHHHHHHHHH
Q psy245 494 SYFEKQELSLDINKLPGK-KLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPSTLRELEKYVA 555 (566)
Q Consensus 494 T~eEK~~Ls~~I~~Lp~e-~L~~Vv~II~~~~p~~~~~~~dEiEiDid~L~~~tLr~L~~yV~ 555 (566)
=.+|-++|...|-.|... .|.+||++|.+. ..+. .....+.||+.+||..|+++|+.|+.
T Consensus 60 y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~-it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 60 YLDELVELHRRLMTLRERHILQQIVNLIEET-GHFH-ITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp THHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEE-ECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhc-Ccee-eecccccceeeccCHHHHHHHHHHHH
Confidence 357889999999999887 699999999863 3443 34488999999999999999999874
Done!