RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy245
(566 letters)
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily,
repeat II. Human Brdt is a testis-specific member of the
BET subfamily of bromodomain proteins; the first
bromodomain in Brdt has been shown to be essential for
male germ cell differentiation. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 102
Score = 193 bits (493), Expect = 6e-60
Identities = 72/101 (71%), Positives = 85/101 (84%)
Query: 262 SLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREY 321
LK+C+ ILKELFSKKH +YAWPFYKPVD LGL+DYH+IIK PMDL T+K K+D REY
Sbjct: 1 QLKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREY 60
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETK 362
++EFA DVRL+F+NCYKYNPPDH V AMA+KLQDVFE +
Sbjct: 61 ADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDR 101
Score = 101 bits (254), Expect = 7e-26
Identities = 48/136 (35%), Positives = 62/136 (45%), Gaps = 41/136 (30%)
Query: 79 QLAFISKNVLKPVMKHQH---AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPIL 135
QL F S +LK + +H AWPF++PVD L L
Sbjct: 1 QLKFCSG-ILKELFSKKHKAYAWPFYKPVDPEALGLH----------------------- 36
Query: 136 LAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNK 195
DYH +IKHPMDL TIKK+L+N Y +E +D MF+NCY YN
Sbjct: 37 --------------DYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNP 82
Query: 196 PGEDVVVMAQTLEKLF 211
P V MA+ L+ +F
Sbjct: 83 PDHPVHAMARKLQDVF 98
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily,
repeat I. Human Brdt is a testis-specific member of the
BET subfamily of bromodomain proteins; the first
bromodomain in Brdt has been shown to be essential for
male germ cell differentiation. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 107
Score = 182 bits (463), Expect = 1e-55
Identities = 78/142 (54%), Positives = 90/142 (63%), Gaps = 37/142 (26%)
Query: 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPI 134
R+TNQL ++ K VLK + KH+ AWPF QPVDA+ LNLP
Sbjct: 1 RHTNQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLP---------------------- 38
Query: 135 LLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN 194
DYHK+IK PMDLGTIKKRLEN YYWS E I DFNTMFTNCY+YN
Sbjct: 39 ---------------DYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83
Query: 195 KPGEDVVVMAQTLEKLFLTKVS 216
KPG+DVV+MAQTLEKLFL K++
Sbjct: 84 KPGDDVVLMAQTLEKLFLQKLA 105
Score = 120 bits (303), Expect = 1e-32
Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 260 TESLKYC-NEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA 318
T L+Y +LK L+ K AWPF +PVDA L L DYH+IIK PMDLGT+K +++
Sbjct: 3 TNQLQYLLKVVLKALWKHKF---AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLEN 59
Query: 319 REYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIA 364
Y S+ E D +FTNCY YN P DVV MA+ L+ +F K+A
Sbjct: 60 NYYWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLA 105
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain. BDF1/BDF2 like subfamily,
restricted to fungi, repeat II. BDF1 and BDF2 are yeast
transcription factors involved in the expression of a
wide range of genes, including snRNAs; they are required
for sporulation and DNA repair and protect histone H4
from deacetylation. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 102
Score = 147 bits (372), Expect = 2e-42
Identities = 54/100 (54%), Positives = 68/100 (68%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYK 322
LK+C E+LKEL KHS+Y WPF PVD L + +Y IIKKPMDLGT+ K+ +Y+
Sbjct: 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQ 61
Query: 323 SSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETK 362
S+KEF DVRLIF NCY +NP DV M +L++VF K
Sbjct: 62 SAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDK 101
Score = 88.1 bits (219), Expect = 4e-21
Identities = 45/128 (35%), Positives = 58/128 (45%), Gaps = 40/128 (31%)
Query: 87 VLKPVMKHQH---AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVP 143
VLK +MK +H WPF PVD + LN+P
Sbjct: 8 VLKELMKPKHSAYNWPFLDPVDPVALNIP------------------------------- 36
Query: 144 VLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVM 203
+Y +IK PMDLGTI K+L+N Y S KE D +F NCY +N G DV +M
Sbjct: 37 ------NYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMM 90
Query: 204 AQTLEKLF 211
LE++F
Sbjct: 91 GHQLEEVF 98
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily
specific to plants. Might function as a global
transcription factor. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 99
Score = 133 bits (338), Expect = 1e-37
Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYK 322
+K C +L++L K W F PVD LGL DY +IIKKPMDLGTVK K++ EY
Sbjct: 2 MKQCGTLLRKLMKHKWG---WVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYS 58
Query: 323 SSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETK 362
S +EFA DVRL F N +YNPP +DV MAK+L +FET+
Sbjct: 59 SPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETR 98
Score = 95.9 bits (239), Expect = 6e-24
Identities = 44/129 (34%), Positives = 58/129 (44%), Gaps = 37/129 (28%)
Query: 86 NVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVL 145
+L+ +MKH+ W F+ PVD + L LP
Sbjct: 7 TLLRKLMKHKWGWVFNAPVDVVALGLP--------------------------------- 33
Query: 146 IILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQ 205
DY +IK PMDLGT+KK+LE Y S +E +D F N YN PG DV MA+
Sbjct: 34 ----DYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAK 89
Query: 206 TLEKLFLTK 214
L K+F T+
Sbjct: 90 ELLKIFETR 98
>gnl|CDD|197636 smart00297, BROMO, bromo domain.
Length = 107
Score = 128 bits (324), Expect = 2e-35
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 261 ESLKYCNEILKELFSKKHSS-YAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAR 319
+ K E+LK + K S +WPF KPV DY++IIKKPMDL T+K K++
Sbjct: 3 KLQKKLQELLKAVLDKLDSHPLSWPFLKPVSRKEAP--DYYDIIKKPMDLKTIKKKLENG 60
Query: 320 EYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKA 366
+Y S +EF D L+F+N YN PD +V AKKL+ FE K+ +
Sbjct: 61 KYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
Score = 101 bits (253), Expect = 1e-25
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 39/140 (27%)
Query: 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPI 134
+ +L + K VL + H +WPF +PV E P
Sbjct: 3 KLQKKLQELLKAVLDKLDSHPLSWPFLKPVSRK-----------------------EAP- 38
Query: 135 LLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN 194
DY+ +IK PMDL TIKK+LEN Y S +E ++DFN MF+N YN
Sbjct: 39 ---------------DYYDIIKKPMDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYN 83
Query: 195 KPGEDVVVMAQTLEKLFLTK 214
P +V A+ LEK F K
Sbjct: 84 GPDSEVYKDAKKLEKFFEKK 103
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain. Bromodomains are found in many
chromatin-associated proteins and in nuclear histone
acetyltransferases. They interact specifically with
acetylated lysine.
Length = 99
Score = 117 bits (296), Expect = 9e-32
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYK 322
K +L L K + PF +PVD DY+E+IK PMDL T+K K+ EYK
Sbjct: 2 KKKLRSLLDALKKLKRD-LSEPFLEPVDP--KEAPDYYEVIKNPMDLSTIKKKLKNGEYK 58
Query: 323 SSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKI 363
S +EF DVRLIF+N YN P + AKKL+ +FE +
Sbjct: 59 SLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
Score = 85.9 bits (213), Expect = 2e-20
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 125 VLSMYIEYPILLAFALTVPV-LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDF 183
+L + L+ PV DY++VIK+PMDL TIKK+L+N Y S +E +D
Sbjct: 8 LLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADV 67
Query: 184 NTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
+F+N YN PG + A+ LEKLF +
Sbjct: 68 RLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily. Gcn5p
is a histone acetyltransferase (HAT) which mediates
acetylation of histones at lysine residues; such
acetylation is generally correlated with the activation
of transcription. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 101
Score = 106 bits (268), Expect = 7e-28
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 268 EILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEF 327
++L L K H S AWPF +PVD DY+++IKKPMDL T++ K++ Y + +EF
Sbjct: 8 KVLDSL--KNHKS-AWPFLEPVDKEEAP--DYYDVIKKPMDLSTMEEKLENGYYVTLEEF 62
Query: 328 ADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAK 365
D++LIF NC YN PD + A KL+ F K+ +
Sbjct: 63 VADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKLKE 100
Score = 96.5 bits (241), Expect = 4e-24
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 39/131 (29%)
Query: 85 KNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPV 144
K VL + H+ AWPF +PVD + P
Sbjct: 7 KKVLDSLKNHKSAWPFLEPVDKEE---------------------------------AP- 32
Query: 145 LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMA 204
DY+ VIK PMDL T++++LEN YY + +E ++D +F NC +YN P + A
Sbjct: 33 -----DYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCA 87
Query: 205 QTLEKLFLTKV 215
LEK F K+
Sbjct: 88 NKLEKFFWKKL 98
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain. BDF1/BDF2 like subfamily,
restricted to fungi, repeat I. BDF1 and BDF2 are yeast
transcription factors involved in the expression of a
wide range of genes, including snRNAs; they are required
for sporulation and DNA repair and protect histone H4
from deacetylation. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 103
Score = 96.6 bits (241), Expect = 4e-24
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKS 323
K+ ++ L K A PF PVD L + Y IIKKPMDLGT++ K+ + Y S
Sbjct: 7 KFLLSSIRSL---KRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTS 63
Query: 324 SKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFE 360
+EF D L+ NC +N P+H V M K+LQ FE
Sbjct: 64 VEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFE 100
Score = 71.6 bits (176), Expect = 3e-15
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 37/126 (29%)
Query: 86 NVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVL 145
+ ++ + + + A PF PVD + LN+P
Sbjct: 11 SSIRSLKRLKDARPFLVPVDPVKLNIP--------------------------------- 37
Query: 146 IILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQ 205
Y +IK PMDLGTI+++L++ Y S +E +DFN M NC +N P V M +
Sbjct: 38 ----HYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGK 93
Query: 206 TLEKLF 211
L+ F
Sbjct: 94 RLQAAF 99
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily. Tif1
(transcription intermediary factor 1) is a member of the
tripartite motif (TRIM) protein family, which is
characterized by a particular domain architecture. It
functions by recruiting coactivators and/or corepressors
to modulate transcription. Vertebrate Tif1-gamma, also
labeled E3 ubiquitin-protein ligase TRIM33, plays a role
in the control of hematopoiesis. Its homologue in
Xenopus laevis, Ectodermin, has been shown to function
in germ-layer specification and control of cell growth
during embryogenesis. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 109
Score = 95.4 bits (238), Expect = 1e-23
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 10/110 (9%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDARE-- 320
+ C +L EL+ + S PF++PV + +Y++IIK PMDL ++ K+ +
Sbjct: 6 QRKCERLLLELYCHELSL---PFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQ 59
Query: 321 -YKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKA-PD 368
Y S +EF DVRL+F NCYK+N D +V K+L+ FE ++ + PD
Sbjct: 60 HYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109
Score = 68.5 bits (168), Expect = 3e-14
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 143 PVLIILQDYHKVIKHPMDLGTIKKRLE---NFYYWSGKEAISDFNTMFTNCYVYNKPGED 199
PV + +Y+K+IK PMDL I+K+L+ +Y S +E ++D MF NCY +N+ +
Sbjct: 28 PVSPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSE 87
Query: 200 VVVMAQTLEKLFLTKV 215
V + LE F ++
Sbjct: 88 VAQAGKELELFFEEQL 103
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily. Cbp (CREB
binding protein or CREBBP) is an acetyltransferase
acting on histone, which gives a specific tag for
transcriptional activation and also acetylates
non-histone proteins. CREBBP binds specifically to
phosphorylated CREB protein and augments the activity of
phosphorylated CREB to activate transcription of
cAMP-responsive genes. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 108
Score = 89.0 bits (221), Expect = 2e-21
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 277 KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFT 336
K + PF +PVD LG+ DY +I+K PMDL T++ K+D +Y+ ++ DDV L+F
Sbjct: 17 KQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFD 76
Query: 337 NCYKYNPPDHDVVAMAKKLQDVFETKI 363
N + YN V KL +VFE +I
Sbjct: 77 NAWLYNRKTSRVYKYCTKLAEVFEQEI 103
Score = 55.1 bits (133), Expect = 1e-09
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 125 VLSMYIEYPILLAFALTV-PVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDF 183
+ +Y + P L F V P L+ + DY ++K+PMDL TI+++L+ Y + + D
Sbjct: 12 LEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDV 71
Query: 184 NTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
MF N ++YN+ V L ++F ++
Sbjct: 72 WLMFDNAWLYNRKTSRVYKYCTKLAEVFEQEI 103
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily. SPT7 is
a yeast protein that functions as a component of the
transcription regulatory histone acetylation (HAT)
complexes SAGA, SALSA, and SLIK. SAGA is involved in the
RNA polymerase II-dependent transcriptional regulation
of about 10% of all yeast genes. The SPT7 bromodomain
has been shown to weakly interact with acetylated
histone H3, but not H4. The human representative of this
subfamily is cat eye syndrome critical region protein 2
(CECR2). Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 112
Score = 88.7 bits (220), Expect = 3e-21
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 266 CNEILKELFSKKHSSYAWPFYKPV---DAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYK 322
+++L EL K ++ ++ PF V +A DY++IIKKPMDLGT+ K+ +YK
Sbjct: 12 LDKVLNEL--KTYTEHSTPFLTKVSKREAP-----DYYDIIKKPMDLGTMLKKLKNLQYK 64
Query: 323 SSKEFADDVRLIFTNCYKYNP-PDHDVVAMAKKLQDVFETKIAKAPD 368
S EF DD+ LI+ NC YN P H + A ++ E + PD
Sbjct: 65 SKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLIPD 111
Score = 64.4 bits (157), Expect = 1e-12
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNK-PGEDVVVMAQTLE 208
DY+ +IK PMDLGT+ K+L+N Y S E + D N ++ NC +YN P + A ++
Sbjct: 40 DYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMK 99
Query: 209 K 209
K
Sbjct: 100 K 100
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily. Human
TAFII250 (or TAF250) is the largest subunit of TFIID, a
large multi-domain complex, which initiates the assembly
of the transcription machinery. TAFII250 contains two
bromodomains that specifically bind to acetylated
histone H4. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 112
Score = 87.3 bits (217), Expect = 9e-21
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 269 ILKELFSK-KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEF 327
IL E+ ++ K+ +WPF+ PV+ + DY++IIK+PMDL T++ K+ +Y+S +EF
Sbjct: 4 ILDEIVNELKNLPDSWPFHTPVNKKKV--PDYYKIIKRPMDLQTIRKKISKHKYQSREEF 61
Query: 328 ADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIA 364
+D+ LI N YN PD AK++ ++ E +A
Sbjct: 62 LEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLA 98
Score = 56.1 bits (136), Expect = 8e-10
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 39/141 (27%)
Query: 80 LAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFA 139
L+FI ++ + +WPFH PV+
Sbjct: 1 LSFILDEIVNELKNLPDSWPFHTPVNK--------------------------------- 27
Query: 140 LTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGED 199
VP DY+K+IK PMDL TI+K++ Y S +E + D + N +YN P
Sbjct: 28 KKVP------DYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81
Query: 200 VVVMAQTLEKLFLTKVSARRE 220
A+ + +L ++ R E
Sbjct: 82 YTKKAKEMLELAEELLAEREE 102
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like
subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was
identified as a novel human bromodomain gene by cDNA
library screening. The Drosophila homologue, Acf1, is
part of the CHRAC (chromatin accessibility complex) and
regulates ISWI-induced nucleosome remodeling.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 115
Score = 87.5 bits (217), Expect = 1e-20
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 261 ESLKYCNEILKELFS--KKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDA 318
L++L KH +WPF +PV + DY++IIKKPMDLGT+K K++
Sbjct: 8 HHGPLNLSALEQLLVEIVKHKD-SWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNM 64
Query: 319 REYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETK 362
EYK ++EF D++L+F+NC+ YNP V +LQ F +
Sbjct: 65 GEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKR 108
Score = 72.0 bits (177), Expect = 2e-15
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 39/128 (30%)
Query: 87 VLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLI 146
+L ++KH+ +WPF +PV I+ VP
Sbjct: 20 LLVEIVKHKDSWPFLRPVSKIE---------------------------------VP--- 43
Query: 147 ILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQT 206
DY+ +IK PMDLGTIK++L Y +E +SD +F+NC++YN V
Sbjct: 44 ---DYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTR 100
Query: 207 LEKLFLTK 214
L++ F+ +
Sbjct: 101 LQRFFIKR 108
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain. Bromodomains are 110 amino
acid long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 84
Score = 85.5 bits (212), Expect = 2e-20
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 266 CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSK 325
C EIL++L A PF +PVD DY+E+IK+PMDL T++ K+ + +YKS
Sbjct: 1 CLEILEDLMEHPL---AEPFLEPVDPE--EYPDYYEVIKEPMDLSTIRQKLKSGKYKSLA 55
Query: 326 EFADDVRLIFTNCYKYNPPDHDVVAMAKK 354
EF DV LIF+N YN D D+ AKK
Sbjct: 56 EFLKDVELIFSNAITYNGEDSDIYKDAKK 84
Score = 66.7 bits (163), Expect = 8e-14
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQT 206
DY++VIK PMDL TI+++L++ Y S E + D +F+N YN D+ A+
Sbjct: 28 DYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDIYKDAKK 84
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin
remodeling, contains bromodomain [Chromatin structure
and dynamics / Transcription].
Length = 371
Score = 86.0 bits (213), Expect = 4e-18
Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 15/230 (6%)
Query: 142 VPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVV 201
P ++ + M I +++ G A + + Y+ ++
Sbjct: 39 APEEEGSKNLFQKQLKRMPKEYITSIVDD--REPGSMANVNDDLENVGGITYSPFEKNRP 96
Query: 202 VMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTE 261
F V ES T+ + D+ L
Sbjct: 97 ES-----LRFDEIVFLAIESVTPESGLGSLLMAHLKTSVKKRKTPKIEDE------LLYA 145
Query: 262 SLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREY 321
K + K+LF + + F DY+EIIK PMDL T++ K+ Y
Sbjct: 146 DNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYP--DYYEIIKSPMDLLTIQKKLKNGRY 203
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371
KS +EF D+ L+F NC YN PD V AK+L+ F I + P+++
Sbjct: 204 KSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEML 253
Score = 82.9 bits (205), Expect = 4e-17
Identities = 63/211 (29%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY+++IK PMDL TI+K+L+N Y S +E +SD N MF NC +YN P V V A+ LEK
Sbjct: 180 DYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEK 239
Query: 210 LFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEI 269
FL + E ++ +
Sbjct: 240 YFLKLIEEIPEEMLELSIKPGREEREER-------------------------------E 268
Query: 270 LKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFAD 329
+ + + AWPF +PV + DY++ I+ PMDL T + K+ Y+ + F
Sbjct: 269 SVLITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVR 326
Query: 330 DVRLIFTNCYKYNPPDHDVVAMAKKLQDVFE 360
D +L F NC YN D A L+D
Sbjct: 327 DAKLFFDNCVMYNGEVTDYYKNANVLEDFVI 357
Score = 37.1 bits (86), Expect = 0.024
Identities = 28/97 (28%), Positives = 40/97 (41%)
Query: 130 IEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTN 189
+ + L + DY+K I+ PMDL T + +L N YY + + D F N
Sbjct: 275 SQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDN 334
Query: 190 CYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIK 226
C +YN D A LE + K RE + I
Sbjct: 335 CVMYNGEVTDYYKNANVLEDFVIKKTRLIREYPKLID 371
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like
subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and
2B (BAZ2B) were identified as a novel human bromodomain
gene by cDNA library screening. BAZ2A is also known as
Tip5 (Transcription termination factor I-interacting
protein 5) and hWALp3. The proteins may play roles in
transcriptional regulation. Human Tip5 is part of a
complex termed NoRC (nucleolar remodeling complex),
which induces nucleosome sliding and may play a role in
the regulation of the rDNA locus. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 97
Score = 79.0 bits (195), Expect = 6e-18
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYK 322
L C IL E+ + H AWPF +PV+ + Y +IIKKPMD T++ K+++ +YK
Sbjct: 2 LALCETILDEM--EAHED-AWPFLEPVNTKLV--PGYRKIIKKPMDFSTIREKLESGQYK 56
Query: 323 SSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETK 362
+ +EFA+DVRL+F NC +N D +V ++ FE +
Sbjct: 57 TLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKR 96
Score = 54.7 bits (132), Expect = 2e-09
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 39/122 (31%)
Query: 93 KHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYH 152
H+ AWPF +PV+ VP Y
Sbjct: 14 AHEDAWPFLEPVNT---------------------------------KLVP------GYR 34
Query: 153 KVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFL 212
K+IK PMD TI+++LE+ Y + +E D +F NC +N+ +V + K F
Sbjct: 35 KIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFE 94
Query: 213 TK 214
+
Sbjct: 95 KR 96
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily.
WDR9 is a human gene located in the Down Syndrome
critical region-2 of chromosome 21. It encodes for a
nuclear protein containing WD40 repeats and two
bromodomains, which may function as a transcriptional
regulator involved in chromatin remodeling and play a
role in embryonic development. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 119
Score = 78.3 bits (193), Expect = 2e-17
Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKS 323
K C E++ ++ + S PF +PVD L DY +II PMDLGTVK + Y
Sbjct: 8 KQCKELVNLMWDCEDSE---PFRQPVDL--LKYPDYRDIIDTPMDLGTVKETLFGGNYDD 62
Query: 324 SKEFADDVRLIFTNCYKYNPPDHD-VVAMAKKLQDVFETKIAK 365
EFA DVRLIF+N Y P + +M +L +FE I K
Sbjct: 63 PMEFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFEEHIKK 105
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN 194
DY +I PMDLGT+K+ L Y E D +F+N Y
Sbjct: 37 DYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome
transcription factor-like subfamily (WSTF-like). The
Williams-Beuren syndrome deletion transcript 9 is a
putative transcriptional regulator. WSTF was found to
play a role in vitamin D-mediated transcription as part
of two chromatin remodeling complexes, WINAC and WICH.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 97
Score = 74.1 bits (182), Expect = 3e-16
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYK 322
L+ C EIL ++ + S WPF +PV A DY ++I PMDL T++ K Y
Sbjct: 2 LQKCEEILSKILKYRFS---WPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYS 56
Query: 323 SSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVF 359
S +EF DD++L+F+N KY V++ +K +
Sbjct: 57 SVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCC 93
Score = 50.6 bits (121), Expect = 5e-08
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 39/115 (33%)
Query: 87 VLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLI 146
+L ++K++ +WPF +PV A +
Sbjct: 8 ILSKILKYRFSWPFREPVTADEA------------------------------------- 30
Query: 147 ILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVV 201
+DY KVI +PMDL T++ + Y S +E + D +F+N Y + G V+
Sbjct: 31 --EDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA
domains. Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine. The structure(2DKW) in this alignment is an
uncharacterized protein predicted from analysis of cDNA
clones from human fetal liver.
Length = 112
Score = 73.5 bits (181), Expect = 7e-16
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 263 LKYC-NEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREY 321
L+ ++LK L S K + F KPVD + DY+EIIK+PMDL T+ K+D +Y
Sbjct: 4 LRLFLRDVLKRLASDKRFN---AFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQY 58
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHD----VVAMAKKLQDVFETKIA 364
++K+F D+ LI TN +YNP + + A +L+D I
Sbjct: 59 LTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRDEVHAMIE 105
Score = 42.7 bits (101), Expect = 4e-05
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 138 FALTVPVLII-LQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN-- 194
A T PV + DY+++IK PMDL TI ++L+ Y + K+ + D + + TN YN
Sbjct: 22 NAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPD 81
Query: 195 --KPGEDVVVMAQTLEKLFLTKVSA 217
+ + A L + A
Sbjct: 82 RDPADKLIRSRACELRDEVHAMIEA 106
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to
fungi. SNF2 is a yeast protein involved in
transcriptional activation, it is the catalytic
component of the SWI/SNF ATP-dependent chromatin
remodeling complex. The protein is essential for the
regulation of gene expression (both positive and
negative) of a large number of genes. The SWI/SNF
complex changes chromatin structure by altering
DNA-histone contacts within the nucleosome, which
results in a re-positioning of the nucleosome and
facilitates or represses the binding of gene-specific
transcription factors. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 103
Score = 71.2 bits (175), Expect = 3e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY+ +IK P+ L IK+R+E Y S +E + DF+ MF N YN+ G V A +EK
Sbjct: 38 DYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEK 97
Query: 210 LFLTK 214
F K
Sbjct: 98 AFKKK 102
Score = 57.7 bits (140), Expect = 2e-10
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
DY+ IIK+P+ L +K +++ R YKS +EF +D L+F N YN V A +++
Sbjct: 38 DYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEK 97
Query: 358 VFETKI 363
F+ K
Sbjct: 98 AFKKKY 103
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup. In
mammals, brd8 (bromodomain containing 8) interacts with
the thyroid hormone receptor in a ligand-dependent
fashion and enhances thyroid hormone-dependent
activation from thyroid response elements. Brd8 is
thought to be a nuclear receptor coactivator.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 104
Score = 63.9 bits (156), Expect = 1e-12
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 269 ILKELFSKKHSSYAWPFYKPV--DAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKE 326
+ + L S +++S F KPV D A YH ++ +PMDL T+K ++ +S+ E
Sbjct: 11 VYRTLASHRYAS---VFLKPVTEDIA----PGYHSVVYRPMDLSTIKKNIENGTIRSTAE 63
Query: 327 FADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
F DV L+F N YN DHDV MA ++Q
Sbjct: 64 FQRDVLLMFQNAIMYNSSDHDVYLMAVEMQR 94
Score = 50.1 bits (120), Expect = 8e-08
Identities = 25/56 (44%), Positives = 29/56 (51%)
Query: 149 QDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMA 204
YH V+ PMDL TIKK +EN S E D MF N +YN DV +MA
Sbjct: 34 PGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLMA 89
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily. BRD1 is
a mammalian gene which encodes for a nuclear protein
assumed to be a transcriptional regulator. BRD1 has been
implicated with brain development and susceptibility to
schizophrenia and bipolar affective disorder.
Bromodomains are 110 amino acid long domains that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 98
Score = 62.4 bits (152), Expect = 4e-12
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 285 FYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPP 344
F +PVD + + DY + IK+PMD T++ K++++ Y++ ++F D LI NC YN
Sbjct: 22 FSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79
Query: 345 DHDVVAMAKKLQD 357
D A +L+D
Sbjct: 80 DTIFYRAAVRLRD 92
Score = 54.3 bits (131), Expect = 2e-09
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN 194
DY IK PMD T++K+LE+ Y + ++ +DFN + NC YN
Sbjct: 33 DYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYN 77
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 105
Score = 59.6 bits (145), Expect = 4e-11
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY+ VIK P+D+ I+ ++E Y S + +SDF MF N YN+P + A TL+K
Sbjct: 38 DYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQK 97
Query: 210 LFL 212
+ L
Sbjct: 98 VLL 100
Score = 58.9 bits (143), Expect = 7e-11
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
DY+++IKKP+D+ +++K++ +Y+S + D L+F N KYN PD + A LQ
Sbjct: 38 DYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQK 97
Query: 358 VF-ETK 362
V ETK
Sbjct: 98 VLLETK 103
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup. The BRD7
gene encodes a nuclear protein that has been shown to
inhibit cell growth and the progression of the cell
cycle by regulating cell-cycle genes at the
transcriptional level. BRD7 has been identified as a
gene involved in nasopharyngeal carcinoma. The protein
interacts with acetylated histone H3 via its
bromodomain. Bromodomains are 110 amino acid long
domains that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 98
Score = 58.2 bits (141), Expect = 1e-10
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 299 YHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKL 355
Y IIK PMD T+K K+ +Y+S +EF DD +L+ N KYN PD AKKL
Sbjct: 34 YSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKL 90
Score = 54.0 bits (130), Expect = 3e-09
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 146 IILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPG 197
I Y +IKHPMD T+K++++N Y S +E DF M N YNKP
Sbjct: 29 FIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 103
Score = 57.8 bits (140), Expect = 2e-10
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY+K+I P+DL TI+ + N Y + +E + DF MF N YN+ G V A LEK
Sbjct: 38 DYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEK 97
Query: 210 LFLTKV 215
+ K
Sbjct: 98 VLKEKR 103
Score = 45.1 bits (107), Expect = 4e-06
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 272 ELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDV 331
+LF +K S +P DY++II +P+DL T++ + +Y + +E DD
Sbjct: 25 DLFMEKPSKKDYP-------------DYYKIILEPIDLKTIEHNIRNDKYATEEELMDDF 71
Query: 332 RLIFTNCYKYN 342
+L+F N YN
Sbjct: 72 KLMFRNARHYN 82
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like
subfamily. WDR9 is a human gene located in the Down
Syndrome critical region-2 of chromosome 21. It encodes
for a nuclear protein containing WD40 repeats and two
bromodomains, which may function as a transcriptional
regulator involved in chromatin remodeling and play a
role in embryonic development. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 128
Score = 58.1 bits (141), Expect = 2e-10
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 137 AFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP 196
F V + DY + PMDL TI+ RLEN YY S + D + +N +N+P
Sbjct: 47 YFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEP 106
Query: 197 GEDVVVMAQTLEKLFL 212
++ A+ L L
Sbjct: 107 NSEIAKKAKRLSDWLL 122
Score = 52.3 bits (126), Expect = 2e-08
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 266 CNEILKELF---SKKHSSYAWPFYKPVD-AAWLGLNDYHEIIKKPMDLGTVKAKMDAREY 321
++ L A F PVD AW DY + PMDL T++++++ R Y
Sbjct: 26 RERLISGLDKLLLSLQLEIAEYFEYPVDLRAWY--PDYWNRVPVPMDLETIRSRLENRYY 83
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVF 359
+S + DVRLI +N +N P+ ++ AK+L D
Sbjct: 84 RSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWL 121
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 103
Score = 54.7 bits (132), Expect = 2e-09
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
DY++ IK P+ L ++ K+ EY++ +E D+ L+F N +YN P+ + A+KLQ
Sbjct: 38 DYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQK 97
Query: 358 VFETK 362
+ + K
Sbjct: 98 LMQAK 102
Score = 47.3 bits (113), Expect = 7e-07
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY++ IK+P+ L I+ +L+N Y + +E +D N MF N YN P + A+ L+K
Sbjct: 38 DYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQK 97
Query: 210 LFLTKV 215
L K
Sbjct: 98 LMQAKK 103
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily. The
SP100C protein is a splice variant of SP100, a major
component of PML-SP100 nuclear bodies (NBs), which are
poorly understood. It is covalently modified by SUMO-1
and may play a role in processes at the chromatin level.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 102
Score = 52.0 bits (125), Expect = 2e-08
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
DY + IK+PM L VK +++ R Y + + F D+RLIF N + D D + L+
Sbjct: 32 DYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEK 90
Query: 358 VFE 360
FE
Sbjct: 91 KFE 93
Score = 44.3 bits (105), Expect = 9e-06
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 149 QDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLE 208
+DY + IK PM L +K+RL Y + + + D +F N ++ K +D + TLE
Sbjct: 31 RDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYK-DDDFGQVGITLE 89
Query: 209 KLF 211
K F
Sbjct: 90 KKF 92
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific
to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
subfamily A member 2 is a global transcriptional
activator, which cooperates with nuclear hormone
receptors to boost transcriptional activation.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 107
Score = 50.9 bits (122), Expect = 5e-08
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 140 LTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGED 199
+ +P L +Y+++I+ P+D IK+R+ N Y S ++ D + N +N G
Sbjct: 29 IQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSL 88
Query: 200 VVVMAQTLEKLF 211
+ + L+ +F
Sbjct: 89 IYEDSIVLQSVF 100
Score = 45.5 bits (108), Expect = 4e-06
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 296 LNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKL 355
L +Y+E+I+KP+D +K ++ +Y+S ++ DV L+ N +N + + L
Sbjct: 37 LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 96
Query: 356 QDVFETKIAK 365
Q VF++ K
Sbjct: 97 QSVFKSARQK 106
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily. RACK7
(also called human protein kinase C-binding protein) was
identified as a potential tumor suppressor genes, it
shares domain architecture with BS69/ZMYND11; both have
been implicated in the regulation of cellular
proliferation. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 99
Score = 48.9 bits (117), Expect = 2e-07
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMD 317
+L++ LK+ E +K+ ++ PF KPVD DY + + KPMDL T++ +
Sbjct: 3 QLSKLLKFALERMKQPGAE-------PFLKPVDLEQF--PDYAQYVFKPMDLSTLEKNVR 53
Query: 318 AREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKI 363
+ Y S+ F D + I N YN DH + AK + + E ++
Sbjct: 54 KKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICEQEM 99
Score = 36.2 bits (84), Expect = 0.006
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY + + PMDL T++K + Y S ++D + N +YN + A+ + K
Sbjct: 34 DYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVK 93
Query: 210 L 210
+
Sbjct: 94 I 94
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like
subfamily, specific to fungi. Rsc1 and Rsc2 are
components of the RSC complex (remodeling the structure
of chromatin), are essential for transcriptional
control, and have a specific domain architecture
including two bromodomains. The RSC complex has also
been linked to homologous recombination and
nonhomologous end-joining repair of DNA double strand
breaks. Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 106
Score = 48.9 bits (117), Expect = 3e-07
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY+K+IK+P+ L T+KKRL + Y + +E ++D + N +YN G + A LEK
Sbjct: 39 DYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEK 96
Query: 210 LFLTKV 215
+
Sbjct: 97 YINDVI 102
Score = 43.9 bits (104), Expect = 1e-05
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
DY++IIK P+ L TVK ++ Y +++EF +D+ I N YN + A L+
Sbjct: 39 DYYKIIKNPLSLNTVKKRL--PHYTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEK 96
Query: 358 VFETKIA 364
I
Sbjct: 97 YINDVII 103
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like
subfamily, specific to fungi. Rsc1 and Rsc2 are
components of the RSC complex (remodeling the structure
of chromatin), are essential for transcriptional
control, and have a specific domain architecture
including two bromodomains. The RSC complex has also
been linked to homologous recombination and
nonhomologous end-joining repair of DNA double strand
breaks. Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 104
Score = 48.4 bits (116), Expect = 3e-07
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
+Y++ I +P+ L IKK+++ Y S + ++D N MF N +YN+ A LEK
Sbjct: 39 EYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEK 98
Query: 210 LF 211
Sbjct: 99 EA 100
Score = 47.6 bits (114), Expect = 6e-07
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQ 356
+Y++ I P+ L +K K+ R+YKS +F +D+ L+F N YN D A L+
Sbjct: 39 EYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLE 97
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 113
Score = 48.5 bits (116), Expect = 4e-07
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
+Y+E++ P+DL ++ K+ EY + D L+ N Y PD A KL +
Sbjct: 40 EYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWE 99
Query: 358 VFE 360
+F
Sbjct: 100 LFL 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
+Y++V+ +P+DL I+++L+ Y + +DF + N Y KP A L +
Sbjct: 40 EYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWE 99
Query: 210 LFLTKVSARRE 220
LFL SAR E
Sbjct: 100 LFL---SARNE 107
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily.
Bromodomains are found in many chromatin-associated
proteins and in nuclear histone acetyltransferases. They
interact specifically with acetylated lysine.
Length = 114
Score = 46.3 bits (110), Expect = 2e-06
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 263 LKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGT 311
+ +L+EL + + AWPF +PV+ G DY ++IK+PM GT
Sbjct: 2 YEALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGT 50
Score = 30.1 bits (68), Expect = 0.96
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 37/83 (44%)
Query: 87 VLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLI 146
LK +++ AWPF +PV+ P
Sbjct: 11 ELKRHRRNEDAWPFLEPVNPPRRGAP---------------------------------- 36
Query: 147 ILQDYHKVIKHPMDLGTIKKRLE 169
DY VIK PM GT +
Sbjct: 37 ---DYRDVIKRPMSFGTKVNNIV 56
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 103
Score = 44.0 bits (104), Expect = 1e-05
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY+ VIK P+DL TI +R+++ YY S ++ D + M N +N+PG V A ++K
Sbjct: 38 DYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKK 97
Query: 210 LF 211
+F
Sbjct: 98 IF 99
Score = 41.3 bits (97), Expect = 1e-04
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 267 NEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKE 326
++ ELF K S +P DY+ +IK+P+DL T+ ++ + YKS ++
Sbjct: 20 GRLISELFQKLPSKVLYP-------------DYYAVIKEPIDLKTIAQRIQSGYYKSIED 66
Query: 327 FADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETK 362
D+ L+ N +N P V A ++ +F K
Sbjct: 67 MEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFTAK 102
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family. ASH1
(absent, small, or homeotic 1) is a member of the
trithorax-group in Drosophila melanogaster, an
epigenetic transcriptional regulator of HOX genes.
Drosophila ASH1 has been shown to methylate specific
lysines in histones H3 and H4. Mammalian ASH1 has been
shown to methylate histone H3. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 106
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 298 DYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQD 357
DY+E I P+DL T++ ++ YK+ + F D+ +F N KY + +L+
Sbjct: 40 DYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRK 99
Query: 358 VFET 361
+
Sbjct: 100 AYYQ 103
Score = 35.8 bits (83), Expect = 0.009
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
DY++ I P+DL TI+K++ YY + + SD +F N Y + L K
Sbjct: 40 DYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRK 99
Query: 210 LFLT 213
+
Sbjct: 100 AYYQ 103
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 42.2 bits (100), Expect = 9e-04
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 392 WSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPAR 451
+ P S++ T + A A PA A P + P+PA+ A
Sbjct: 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA--AAAAA 93
Query: 452 PPAKTPVKRKAPPMPNKSVSAQHTQP 477
P A P + P
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 38.7 bits (91), Expect = 0.009
Identities = 13/74 (17%), Positives = 18/74 (24%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
A AA AP + A PA P A + A
Sbjct: 47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
Query: 480 VMNDESDEESSKPM 493
+ E+ P+
Sbjct: 107 APAAAAVEDEVTPL 120
Score = 35.6 bits (83), Expect = 0.075
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
P A AA + A + PA P A P APP P + +A A
Sbjct: 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP---AAPPKPAAAAAAAAAPAA 98
Query: 479 P 479
P
Sbjct: 99 P 99
Score = 32.6 bits (75), Expect = 0.63
Identities = 14/60 (23%), Positives = 18/60 (30%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
P A ++ A+ K PA P AP P K +A AP
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 39.7 bits (93), Expect = 0.004
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 418 QVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQP 477
+ AA + P A PA++ PA PPA P A P +A P
Sbjct: 383 RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442
Query: 478 APVMNDESDEESSKP 492
A V + + P
Sbjct: 443 AAVALAPAPPAQAAP 457
Score = 33.1 bits (76), Expect = 0.44
Identities = 13/73 (17%), Positives = 19/73 (26%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
P AA +A PA+ P P P + +A PAP
Sbjct: 393 PVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
Query: 481 MNDESDEESSKPM 493
+ +
Sbjct: 453 AQAAPETVAIPVR 465
Score = 30.5 bits (69), Expect = 3.0
Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P A AA P P +A PA A A A P A Q AP
Sbjct: 402 APAAAPAAAAS-APAAPPAAAPPA---PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457
Query: 480 VM 481
Sbjct: 458 ET 459
Score = 29.7 bits (67), Expect = 5.0
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 422 KPATAAQRKKPP-TTPLSAPQPASSVKKPARPPAKTPVKRKAPP--MPNKSVSAQHTQPA 478
KPA AA+ P + P+ A+ P A P AP + PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 479 PV 480
PV
Sbjct: 425 PV 426
Score = 28.9 bits (65), Expect = 8.0
Identities = 13/61 (21%), Positives = 18/61 (29%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
PA AA P P + + + A PV+ P + A PA
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485
Query: 480 V 480
Sbjct: 486 A 486
>gnl|CDD|99925 cd05493, Bromo_ALL-1, Bromodomain, ALL-1 like proteins. ALL-1 is a
vertebrate homologue of Drosophila trithorax and is
often affected in chromosomal rearrangements that are
linked to acute leukemias, such as acute lymphocytic
leukemia (ALL). Bromodomains are found in many
chromatin-associated proteins and in nuclear histone
acetyltransferases. They interact specifically with
acetylated lysine.
Length = 131
Score = 36.6 bits (85), Expect = 0.008
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 305 KPMDLGTVKAKMDAREYKSSKEFADDVRLIFT---NCYKYNPPDHDVVAMAK-----KLQ 356
P+DL V K++A Y S +F+DD+ I N P +MAK ++
Sbjct: 58 PPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLME 117
Query: 357 DVF 359
VF
Sbjct: 118 SVF 120
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 38.3 bits (89), Expect = 0.012
Identities = 30/165 (18%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 343 PPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTD 402
+ +++ + +L + + K + S S SD D
Sbjct: 1258 EEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDD 1317
Query: 403 SEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPAS---------SVKKPAR-- 451
+ L+ + KPA A ++ P PA+ + KPA
Sbjct: 1318 DDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAI 1377
Query: 452 --PPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKPMS 494
P K K +A P KS S + ESS+ +S
Sbjct: 1378 GISPEKKVRKMRASPFNKKSGS-----VLGRAATNKETESSENVS 1417
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 37.1 bits (86), Expect = 0.023
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 414 SLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQ 473
+ V P PA + P +A P + P P + APP+P+ SA
Sbjct: 374 AAPSPVRPTPAPS----TRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAP 429
Query: 474 HTQPAPVMNDE 484
A + DE
Sbjct: 430 KLTRAAIPVDE 440
Score = 34.0 bits (78), Expect = 0.21
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 416 QDQVTP--KPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKS---- 469
+ P +P AA PP P+ V P AP + +
Sbjct: 380 RPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVD 439
Query: 470 VSAQHTQPAP 479
++T PAP
Sbjct: 440 EKPKYTPPAP 449
Score = 34.0 bits (78), Expect = 0.24
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASS----VKKPARPPAKTPVKRKAPPMPNKS--VSA 472
+ P PA + P PA S A P K PV+ A P P V+
Sbjct: 360 LVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 473 QHTQPAPVMNDESDEES 489
+
Sbjct: 420 PVPHTPESAPKLTRAAI 436
Score = 29.8 bits (67), Expect = 4.2
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 416 QDQVTPKPATAAQRKKPP---TTPLSAPQPASSVKKPARPPAKTPVKRKA-PPMPNKSVS 471
P TA PP P+ ++ A P K K PP P K
Sbjct: 397 IPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPV--DEKPKYTPPAPPKEEE 454
Query: 472 A 472
Sbjct: 455 K 455
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 36.9 bits (85), Expect = 0.034
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 21/151 (13%)
Query: 418 QVTPKPATAAQRKKPPTTP-LSAPQPASSV------KKPARPPAKTPVKRKAPPMPNK-- 468
QVT A AA +P + + PA SV A P PV++ MP+
Sbjct: 1140 QVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAEVPIAVPVQQSVDYMPSVAQ 1199
Query: 469 ----SVSAQHTQPAPVMNDESDEESSKPMSYFEKQELSLDINKLPGKKLGRVVHIIQSRE 524
S + VM + E++ P E EL +D+ G + V I+
Sbjct: 1200 AAAPQASVNDSAIQQVMMEVVAEKTGYPT---EMLELEMDMEADLGIDSIKRVEILG--- 1253
Query: 525 PSLRDSNPDEIEIDFETL-KPSTLRELEKYV 554
S+++ D E++ E L + TL E+ Y+
Sbjct: 1254 -SVQEIINDLPELNPEDLAELRTLGEIVNYM 1283
>gnl|CDD|226348 COG3827, COG3827, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 231
Score = 35.6 bits (82), Expect = 0.049
Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 394 PDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASS---VKKPA 450
S T +E R R I+ P PA AQ +PAS VK+ +
Sbjct: 61 QSPSQAPTLAEVAARVRAAIARDA--APGPAAVAQ---AQNPDEKKNEPASIEDIVKEIS 115
Query: 451 RPPAKTPVKRKAPPMPNKSVSAQ--HTQPAPVMNDESDEESSKP 492
A K N S + A ++E+ S P
Sbjct: 116 GVIAPKARPPKNAAGENAPASEDRPESTEAVTQSEEATAIKSAP 159
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 35.6 bits (82), Expect = 0.055
Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 8/74 (10%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPP---MPNKSVSAQHT 475
V+ + P TP SAP P P+ P + AP T
Sbjct: 74 VSKPKTGTGKVAPPAATPTSAPTPT-----PSPPASPASGMSAAPASAVEEKSPSEESAT 128
Query: 476 QPAPVMNDESDEES 489
AP S S
Sbjct: 129 ATAPESPSTSVPSS 142
Score = 29.1 bits (65), Expect = 6.2
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 414 SLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQ 473
+ +V P AT P +P ++P S + K+P + A +S S
Sbjct: 79 TGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTS 138
Query: 474 HTQPAP 479
Sbjct: 139 VPSSGS 144
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 35.9 bits (83), Expect = 0.071
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 377 SMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTP 436
+ VP V RW D ++ ISL + TP AA + P
Sbjct: 356 AFVPEKPVK-----RWQVDDPAE-------------ISLPEGQTPSALAAAVQAPHANEP 397
Query: 437 LSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKPMSYF 496
+ K + +A + + +PA + D+ES +
Sbjct: 398 QFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADASAEPADTVEQALDDESELLAALN 457
Query: 497 EKQELSLDINKLPGKKLGRVVHIIQSREPSLRDSNPDEIEID 538
+Q + L + G + + S P DS ++ ++
Sbjct: 458 AEQAVILSQAQSQGFEASSSLDADNSAVPEQIDSTAEQSVVN 499
Score = 30.1 bits (68), Expect = 4.4
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 16/155 (10%)
Query: 326 EFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVN 385
+ DD + Y D A + Q E A+ S+ ++
Sbjct: 551 AYQDDYVAFSSESYNALSDDEQHSANVQSAQSAAE---AQPSSQSLSPISAVTTAAASLA 607
Query: 386 KNNIGRWSPD---SSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQP 442
++I D ++ DS S+ D +S ++ K + + K PP+ A
Sbjct: 608 DDDI----LDAVLAARDSLLSDLDA-----LSPKEGDGKKSSADRKPKTPPSRAPPASLS 658
Query: 443 -ASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQ 476
+S ++ A + ++SV
Sbjct: 659 KPASSPDASQTSASFDLDPDFELATHQSVPEAALA 693
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 35.3 bits (81), Expect = 0.079
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMN 482
P TA + KPPT+P+ P +S + P + P P + + +PA V
Sbjct: 373 PYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQV-- 430
Query: 483 DESDEESSKPMS-YFEKQELSLDINKLPGKKLGRVVHIIQ-SREPSLRDSNPDEIEIDFE 540
+ + ++P+S Y ++L + P G + S P++ D+ P D
Sbjct: 431 ---EAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAA 487
Query: 541 TLKPSTLRELEKYVATCLRKKPRKP 565
P+ +R L Y K P P
Sbjct: 488 APPPANMRPLSPYAVYDDLKPPTSP 512
Score = 29.5 bits (66), Expect = 5.9
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 420 TPKPATAAQRKKPPT---TPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQ 476
T A PP PLS +K P P PV + AP N+ V ++
Sbjct: 477 TAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSA 536
Query: 477 PAPVMNDESDEESSKP 492
P + DE KP
Sbjct: 537 PPTALADEQHHAQPKP 552
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.9 bits (80), Expect = 0.14
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 2/121 (1%)
Query: 364 AKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKP 423
P + S+ P V + R + AR +S + P
Sbjct: 2842 PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901
Query: 424 ATAAQRKKPPTTPLSAPQPASSVKKPARP-PAKTPVKRKAPPMPNKSVSAQHTQPAPVMN 482
+R P P PQP P +P P P R PP+ + A +P+ +
Sbjct: 2902 PDQPERPPQPQAP-PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
Query: 483 D 483
Sbjct: 2961 Q 2961
Score = 33.0 bits (75), Expect = 0.63
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
A A +PP L+ P + S + A PP + PP P Q P
Sbjct: 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE----RPPQPQAPPPPQPQPQPPP 2925
Query: 481 MNDESDEESSKPMS 494
P
Sbjct: 2926 PPQPQPPPPPPPRP 2939
Score = 32.2 bits (73), Expect = 0.89
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPP 464
A PP TPL + +P S PA PP + P P
Sbjct: 421 TPVPASAPPPPATPLPSAEPGSD-DGPAPPPERQPPAPATEP 461
Score = 30.3 bits (68), Expect = 3.7
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 392 WSPDSS-SDSTDSEADERARKLISLQDQVTPKPAT--------AAQRKKPPTTPLSAPQP 442
W+P SS D + + L + + + AT Q + P S P P
Sbjct: 359 WTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTP 418
Query: 443 -ASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESD 486
+ V A PP TP+ P + QP + +
Sbjct: 419 APTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAP 463
Score = 29.9 bits (67), Expect = 4.5
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 420 TPKPATAAQRKKPPT--TPLSAPQPASSVKKPARPPAKTPVKRKAP-------PMPNKSV 470
+ AAQ PP +A S+ A PP P AP P+P
Sbjct: 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPA 2726
Query: 471 SAQHTQPAP 479
+A+ PA
Sbjct: 2727 AARQASPAL 2735
Score = 29.9 bits (67), Expect = 5.1
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
P A+ +PPTT P PA A PP + A ++ PA
Sbjct: 2751 PGGPARPARPPTTA-GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP 2807
Score = 29.5 bits (66), Expect = 6.2
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
+PA A+ + + P A A P A P+P + + P P
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842
Score = 29.5 bits (66), Expect = 6.6
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 18/138 (13%)
Query: 364 AKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEA--DERARKLISLQDQVTP 421
A AP P + V + R S S D D A A L P
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827
Query: 422 KPATAAQRKKPPTTPLSAPQPASSV------------KKPARPPAKTPVKRKAPP---MP 466
P + + P P P P+ + + P+R PA P PP +
Sbjct: 2828 LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
Query: 467 NKSVSAQHTQPAPVMNDE 484
+VS + T+ + D+
Sbjct: 2888 RPAVS-RSTESFALPPDQ 2904
Score = 29.1 bits (65), Expect = 9.1
Identities = 13/64 (20%), Positives = 15/64 (23%), Gaps = 1/64 (1%)
Query: 417 DQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQH-T 475
DQ P A P TP+ A P + PP A
Sbjct: 403 DQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPA 462
Query: 476 QPAP 479
P
Sbjct: 463 PDDP 466
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 34.8 bits (80), Expect = 0.15
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 391 RWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPA 450
+P +++D D AD A + + + +PP SA PAS A
Sbjct: 429 APAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDA 488
Query: 451 R----PPAKTPVKRKAPPMPNKSVSAQHTQP-APVMNDESDEESSKP 492
P A P +P+ A ++ AP E+ P
Sbjct: 489 AFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535
Score = 32.5 bits (74), Expect = 0.75
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 1/69 (1%)
Query: 424 ATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMND 483
+ +A P ++ A P APP APV
Sbjct: 394 SAVPAVTAVTGAAGAALAPKAAAAAAATRAE-APPAAPAPPATADRGDDAADGDAPVPAK 452
Query: 484 ESDEESSKP 492
+ S+
Sbjct: 453 ANARASADS 461
Score = 29.0 bits (65), Expect = 9.0
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 7/107 (6%)
Query: 373 VSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKP 432
+ V R S DS D D++ + A +P
Sbjct: 438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG-----SASAPASDAPPDAAFEP 492
Query: 433 PTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
+ + AR PA R+ P + + P P
Sbjct: 493 APRAAAPSAATPAAVPDARAPAA--ASREDAPAAAAPPAPEARPPTP 537
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 34.3 bits (79), Expect = 0.17
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 405 ADERA-RKLISLQDQ-VTPKPATAAQRKKPPTTP----LSAPQPASSVKKPARPPAKTPV 458
DER R ++ D P A A + T S P A++ P P TP
Sbjct: 254 GDERIVRAFLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPP 313
Query: 459 KRKAPP 464
+ A
Sbjct: 314 EPPARR 319
>gnl|CDD|99924 cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like sub-family.
ZMYND11 or BS69 is a ubiquitously expressed nuclear
protein that has been shown to associate with chromatin.
It interacts with chromatin remodeling factors and might
play a role in chromatin remodeling and gene expression.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 109
Score = 32.4 bits (74), Expect = 0.18
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 293 WLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTN 337
L +I +D+ ++ K+++ +Y S +EF D L+ N
Sbjct: 33 ATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHN 77
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 34.1 bits (77), Expect = 0.20
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 380 PTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSA 439
P + K + S S +S EA ++ + K A R P SA
Sbjct: 361 PAVAQVKAEVQEDSESSEEESDSEEAAATPAQVKTSVKTPQAKANPAPTRAPPAKGAASA 420
Query: 440 PQPASS------------VKKPARPPAKTPV----KRKAPPMPNKSVSAQHTQPAPVMND 483
P + VK P R + V +R P + +A QP PV
Sbjct: 421 PGKVVAAAAQAKQRSPAKVKPPVRTLQNSTVSVRGQRSVPAVGKAVAAAAQAQPGPVKGT 480
Query: 484 ESDEESSKPMS 494
E D ESS+ S
Sbjct: 481 EEDSESSEEES 491
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 33.7 bits (77), Expect = 0.29
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 29/134 (21%)
Query: 428 QRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDE 487
Q+ P TP+ + PA+TP +R + PM + S Q P M SD
Sbjct: 263 QKNTPAQTPMPERSWQT--------PAQTPARRISTPMTEEIKSWQTPLQTPAMY-SSDY 313
Query: 488 ESSKPMSYFEKQEL--------SLDINKLPGKK-----LGRVVHIIQSREPSL------- 527
++ KP + +EL I+ LP G + R P L
Sbjct: 314 QAPKPEPIYTWEELLRERFPSDLFAISSLPDSDSEASDSGPTRKRKRRRVPPLPEYSSDE 373
Query: 528 RDSNPDEIEIDFET 541
+ + DE E+D+E
Sbjct: 374 DEDDSDEDEVDYEK 387
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.5 bits (77), Expect = 0.38
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 375 SSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLI---SLQDQVTPKPATAAQRKK 431
S V L KNN + S D+ S+D + E K Q +P P + +
Sbjct: 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGE 1295
Query: 432 PPTTPLSAPQPASSVKKPAR-----------PPAKTPVKRKAPPMPNKSVSAQHTQPAP- 479
+ VKK KT K+K+ ++ ++Q ++
Sbjct: 1296 SNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRR 1355
Query: 480 --VMNDESDEESSKPMSY 495
+S E
Sbjct: 1356 PRKKKSDSSSEDDDDSEV 1373
Score = 28.9 bits (65), Expect = 9.1
Identities = 27/203 (13%), Positives = 56/203 (27%), Gaps = 18/203 (8%)
Query: 352 AKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARK 411
KK + K KA S +K + + + S D E + +K
Sbjct: 1178 EKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKK 1237
Query: 412 LISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSV- 470
K K + S KP P + + +PP P+K
Sbjct: 1238 SSV----KRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPD 1293
Query: 471 -----------SAQHTQPAPVMNDESDEESSKPM--SYFEKQELSLDINKLPGKKLGRVV 517
+ + + + K K++ + + + R++
Sbjct: 1294 GESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLL 1353
Query: 518 HIIQSREPSLRDSNPDEIEIDFE 540
+ ++ + D+ E+D
Sbjct: 1354 RRPRKKKSDSSSEDDDDSEVDDS 1376
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 33.3 bits (76), Expect = 0.38
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMN 482
A A + P P AP PA++ ARP A P A + +A PAP +
Sbjct: 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494
Query: 483 D 483
D
Sbjct: 495 D 495
Score = 31.4 bits (71), Expect = 1.7
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 419 VTPKPATAAQR--KKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMP 466
P PA AA P P +AP A + AR A P +R P
Sbjct: 383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Score = 30.2 bits (68), Expect = 3.4
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKT-------PVKRKAPPMPNKSVS 471
A A PP P +AP A++ + A PA+ R+A
Sbjct: 389 AAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
Query: 472 AQHTQPAPV 480
A PA
Sbjct: 449 APAPAPAAA 457
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 32.7 bits (75), Expect = 0.41
Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 9/105 (8%)
Query: 376 SSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTT 435
++M + + S + +T A A P T + P
Sbjct: 144 TTMADQSSAELSQNSGQSVPLDTSTTTDPATTPA--------PAAPVDTTPTNSQTPAVA 195
Query: 436 PLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
AP P++ V A P P + P P
Sbjct: 196 TAPAPAVDPQQNAVV-APSQANVDTAATPAPAAPATPDGAAPLPT 239
>gnl|CDD|200499 cd11238, Sema_2A, The Sema domain, a protein interacting module, of
semaphorin 2A (Sema2A). Sema2A, a secreted semaphorin,
signals through its receptor plexin B (PlexB) to
regulate central and peripheral axon pathfinding. In the
Drosophila embryo, Sema2A secreted by oenocytes
interacts with PlexB to guide sensory axons. Sema2A is a
member of the semaphorin family of proteins. Semaphorins
are regulatory molecules in the development of the
nervous system and in axonal guidance. They also play
important roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 452
Score = 33.2 bits (76), Expect = 0.43
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 64 PPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQH 123
+ P RPG N A +S VL H P DA+ P L R +VF H
Sbjct: 321 LSSEVPEPRPGTCVNDSATLSDTVLHFARTH----PL--MDDAVSHGPPLLYLRDVVFTH 374
Query: 124 WVL 126
V+
Sbjct: 375 LVV 377
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 32.9 bits (75), Expect = 0.46
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAP 463
PATA P + +A PA++ +PA PA + AP
Sbjct: 196 PATAPA---PASAQPAAQSPAATQPEPAAAPAAAKAQAPAP 233
Score = 30.2 bits (68), Expect = 3.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 434 TTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
+TP +AP PA A+P A++P P +A+ PAP
Sbjct: 194 STPATAPAPA-----SAQPAAQSP-AATQPEPAAAPAAAKAQAPAPQ 234
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 32.6 bits (74), Expect = 0.50
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSV-KKPARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
P A K+ T +A ++ KK A+ VK + K + +
Sbjct: 17 KPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKE 76
Query: 479 PVMNDESDEESSKPMSYFEKQELSLDINKLPGKKLG 514
V +E+ + +L + +KLP K
Sbjct: 77 SVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKKLFA 112
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 33.1 bits (75), Expect = 0.51
Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 359 FETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQ 418
F + P P V + PT W+ S I
Sbjct: 643 FNVLVFPTPHQPPQVEITPYKPT----------WTQIGHIPYQPSPTGANTMLPIQWAPG 692
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAP 463
P A +PP P Q ++ ARPPA P + + P
Sbjct: 693 TMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPP 737
Score = 30.0 bits (67), Expect = 4.4
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 422 KPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQP 477
PA A R +PP +P ++ ARPPA P P P ++ A +P
Sbjct: 736 PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP-GAPTPQPPPQAPPAPQQRP 790
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 33.1 bits (75), Expect = 0.53
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 422 KPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVM 481
+P + APQ ++ + PA + P + +P PV+
Sbjct: 440 QPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV---VEPEPVV 496
Query: 482 NDESDEESSKPMSYFEKQE 500
E + + P+ YFE+ E
Sbjct: 497 --EETKPARPPLYYFEEVE 513
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 32.5 bits (74), Expect = 0.54
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSV-KKPARPPAKTPVKRKAPPMPNKSVSAQH 474
++ P+P ++ KPPT P + P+P K+ +P K + P K
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Query: 475 TQPAPVMNDESDEESSKPMS 494
QP P +
Sbjct: 113 PQPKPKKPPSKTAAKAPAAP 132
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 32.5 bits (74), Expect = 0.55
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 410 RKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKS 469
RK +L P P Q P P ++P A PA +P A P P K+
Sbjct: 136 RKKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPA---PSAPASSPPPTPASPPPAKA 192
Query: 470 VSAQH 474
+ H
Sbjct: 193 PKSSH 197
Score = 29.0 bits (65), Expect = 7.1
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P P P P + +S PA PP K PP+ + + PAP
Sbjct: 156 PPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAP 214
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 32.7 bits (74), Expect = 0.59
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 393 SPDSSSDSTDSEADERAR------KLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSV 446
S D S+ E +R + S TP P T Q PT P+P ++
Sbjct: 255 SQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPT-----PRPTATT 309
Query: 447 KKPARPPAKTPVKRKAPPMPNKSVSAQHTQP 477
+ + PP +P +A P V + P
Sbjct: 310 QSGSSPPHSSPPGVQANPTTQNLVDCKELDP 340
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 32.8 bits (75), Expect = 0.63
Identities = 30/167 (17%), Positives = 46/167 (27%), Gaps = 18/167 (10%)
Query: 342 NPPD-HDVVAMAKKLQDVFETKIAKAPD--DVPIVSSSSMVPT----LTVNKNNIGRWSP 394
N PD +D++ A + + F A D D + S + + L G +
Sbjct: 3 NAPDLYDLIEAAAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAAC 62
Query: 395 DSSSDSTD------SEADERARKLISLQDQVTPKPATAAQRKKP--PTTPLSAPQPASSV 446
D T +EA + T PA+ A+ P P P P +
Sbjct: 63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122
Query: 447 KKPARPPAKTPVKR-KAPPMPNKSVSAQHTQPAPVMNDESDEESSKP 492
PA PP + P + S
Sbjct: 123 --PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAA 167
Score = 32.1 bits (73), Expect = 1.0
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
S SS +E + T A+ P + P A +S R
Sbjct: 240 SSSESSGCGWGPENECPLPRPAPITLPTR-IWEASGWNGPSSRPGPASSSSSP---RERS 295
Query: 453 PAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKP 492
P+ +P + P P+ ++ + + + S SS+
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSES 335
Score = 29.4 bits (66), Expect = 7.0
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 390 GRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKP 449
SP S + + S ++ + +++++ + S
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
Query: 450 ARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
PPA RK P P+++ S+
Sbjct: 356 PPPPADPSSPRKRPR-PSRAPSSPAASAG 383
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 32.5 bits (75), Expect = 0.63
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 418 QVTPKPATAAQRKKPPTT--------PLSAPQPASSVKK--PARPPAKTPVKRKAPPMPN 467
P A P TT L Q A+ KK PA PV + +
Sbjct: 402 PPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLAS 461
Query: 468 KSVSAQHTQPAPVMNDESDEESSKP 492
+ + AP + +++ P
Sbjct: 462 VRPAPSALEKAPAKKEAYRWKATNP 486
Score = 30.6 bits (70), Expect = 2.8
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPN-----KSV 470
+ PA +AQ PT ++ PQ + PA P + P + +
Sbjct: 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL 429
Query: 471 SAQHTQPAPVMNDESDEESSKPMS 494
++ + ++P++
Sbjct: 430 QRAQGATKAKKSEPAAASRARPVN 453
Score = 29.8 bits (68), Expect = 4.0
Identities = 11/58 (18%), Positives = 13/58 (22%)
Query: 433 PTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESS 490
P PL P+ PA T A P AP +
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418
Score = 29.1 bits (66), Expect = 8.4
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
+ + E +L++ + Q+ +K P S +P +S R
Sbjct: 403 PASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA-SRARPVNSA--LERL 459
Query: 453 PAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKP 492
+ P P K + + PV E + P
Sbjct: 460 ASVRPAPSALEKAPAKKEAYRWKATNPVE--VKKEPVATP 497
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 32.6 bits (75), Expect = 0.73
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAK-TPVKRKAPPMP 466
A A K P P+ + + AR A K K +P
Sbjct: 185 RTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKALP 231
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 32.2 bits (73), Expect = 0.81
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKP--ARPPAKTPVKRKAPPMP 466
P PA A P T A + A+ A P K +R+ P P
Sbjct: 17 PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69
Score = 31.0 bits (70), Expect = 1.6
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 438 SAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQP-APVMNDESDEESSKPMSYF 496
+ + A P P K AP + +A + P + E KP S +
Sbjct: 14 AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLW 73
Query: 497 EKQELSLD 504
+ ++ ++
Sbjct: 74 KLEDFVVE 81
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 32.0 bits (73), Expect = 0.83
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 399 DSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPV 458
D+ + + + + T A P S P P ++ K P PA P
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178
Score = 28.9 bits (65), Expect = 7.5
Identities = 14/82 (17%), Positives = 18/82 (21%), Gaps = 4/82 (4%)
Query: 413 ISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSA 472
I AA K T P+ A P P +
Sbjct: 118 IDTGGAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAP 173
Query: 473 QHTQPAPVMNDESDEESSKPMS 494
P + E+ PMS
Sbjct: 174 AAKPPPTPVARADPRETRVPMS 195
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 31.9 bits (72), Expect = 1.0
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 432 PPTTPLSAPQPASS-----VKKPARPPAKTP-VKRKAPPMPNKSVSAQHTQPAPVMNDES 485
PP S QP S V + P P V + P +P +++ Q P P + E
Sbjct: 71 PPFEGQSEVQPPPSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQKELPPPQVPIEQ 130
Query: 486 DEESSKPM 493
E P+
Sbjct: 131 KEVKPAPL 138
>gnl|CDD|220253 pfam09469, Cobl, Cordon-bleu domain. The Cordon-bleu protein
domain is highly conserved among vertebrates. The
sequence contains three repeated lysine, arginine, and
proline-rich regions, the KKRAP motif. The exact
function of the protein is unknown but it is thought to
be involved in mid-brain neural tube closure. It is
expressed specifically in the node.
Length = 349
Score = 31.5 bits (71), Expect = 1.0
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 14/126 (11%)
Query: 395 DSSSDSTDSEADERARKLISL-------QDQVTPKPATAAQRKKPPTTPLSAPQPASSVK 447
S + ++ + + +DQ PA+ K+ T S P S
Sbjct: 212 CRISSNLSDMTEKEKKGFLGFFQRSKKKRDQCATAPASPLVNKRTFTLGNSISLPYIS-- 269
Query: 448 KPARPPAKTPVKRKAPPMP---NKSVSAQHTQPAPVMNDESDEESSKPMSYFEKQELSLD 504
P P KR+APP P ++SV V + DE P + SL
Sbjct: 270 --GVGPKSEPKKRRAPPPPMPTSQSVPQDLPPSCIVKSMSVDETDKTPEEVGRVRAGSLQ 327
Query: 505 INKLPG 510
++ L G
Sbjct: 328 LSSLSG 333
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 31.4 bits (71), Expect = 1.1
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 395 DSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPA 454
D + + S+A +A D A AA + PP ++ ++ PA A
Sbjct: 80 DGAEATAPSDAGSQAS---PDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAA 136
Query: 455 KTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKP 492
+ P + + P ++ E S+
Sbjct: 137 RDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPD 174
Score = 29.8 bits (67), Expect = 3.1
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
P + +++ D A A + + T PATAA R P P + QPA+ R
Sbjct: 101 QPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTA--QPATP--DERRS 156
Query: 453 PAKTPVKRKAPPMP 466
P + P PP P
Sbjct: 157 PRQRPPVSGEPPTP 170
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 31.4 bits (71), Expect = 1.1
Identities = 15/46 (32%), Positives = 15/46 (32%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMP 466
A A PP P A PA P P P APP P
Sbjct: 49 STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPP 94
Score = 28.7 bits (64), Expect = 9.1
Identities = 17/53 (32%), Positives = 17/53 (32%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSA 472
PA AA PP APQP P PPA P PN
Sbjct: 52 AAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPP 104
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 31.7 bits (72), Expect = 1.2
Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 13/85 (15%)
Query: 421 PKPATAAQRKKPPTT-PLSAPQPA---------SSVKKPARPPAKTPVKRKA---PPMPN 467
Q KP T P +APQP+ S A+P A + A P +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429
Query: 468 KSVSAQHTQPAPVMNDESDEESSKP 492
+A P K
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKE 454
Score = 30.1 bits (68), Expect = 4.1
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 11/132 (8%)
Query: 418 QVTPKPATAAQRKKPPTT---PLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVS--- 471
P+ AT P + P + P S A PA+ ++K P S+
Sbjct: 411 PSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPST 470
Query: 472 --AQHTQPAPVMNDESDEESSKPMSYFEKQELSLDINKLPGKKLGRVVHI---IQSREPS 526
+ + + + F +++L + G + + + + P
Sbjct: 471 LRPIQEKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEFAGTRPQEEKALKETMINCRPK 530
Query: 527 LRDSNPDEIEID 538
L + E+ +D
Sbjct: 531 LLNGTTFEVAVD 542
Score = 29.4 bits (66), Expect = 6.1
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 414 SLQDQVTPKPATAAQRKKPPTTPLSAPQPA-SSVKKPARPPAKTPVK-RKAPPMPNKSVS 471
S +P P+ ++ +P SA QPA + PPA PV P +
Sbjct: 393 SAAAAASPSPSQSSAAAQPSAPQ-SATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQ 451
Query: 472 AQHTQPAPVM 481
+ + PV
Sbjct: 452 FKEEKKIPVS 461
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 31.6 bits (72), Expect = 1.2
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 404 EADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAP 463
EA ER P PA A PP PA+ + A PA P A
Sbjct: 375 EALERGAPAPPSAAWGAPTPAAPAA---PPPAAAPPVPPAAPARPAAARPAPAPAPPAAA 431
Query: 464 PMPNKSVSAQ 473
P +S
Sbjct: 432 APPARSADPA 441
Score = 28.9 bits (65), Expect = 7.9
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P P +AA P A P ++ P + P P +A +
Sbjct: 381 APAPPSAAWGAPTP--AAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438
Query: 480 V 480
Sbjct: 439 D 439
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 31.2 bits (71), Expect = 1.2
Identities = 9/65 (13%), Positives = 15/65 (23%)
Query: 412 LISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVS 471
+ Q +P + +P T P P +A P
Sbjct: 119 VQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAE 178
Query: 472 AQHTQ 476
+ Q
Sbjct: 179 KEKEQ 183
Score = 30.0 bits (68), Expect = 3.0
Identities = 12/75 (16%), Positives = 22/75 (29%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHT 475
+Q P + Q ++ A PV+ + P +A T
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVT 167
Query: 476 QPAPVMNDESDEESS 490
Q E+++E
Sbjct: 168 QAVEAPKVEAEKEKE 182
Score = 28.5 bits (64), Expect = 8.9
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 408 RARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPN 467
++ Q T + T P+ PA +PA P + +AP +
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAV---EAPKVEA 177
Query: 468 KSVSAQH 474
+ Q
Sbjct: 178 EKEKEQR 184
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 31.9 bits (73), Expect = 1.2
Identities = 13/61 (21%), Positives = 16/61 (26%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
A +P P AP P S A +P AP A +P
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477
Query: 479 P 479
Sbjct: 478 A 478
Score = 31.5 bits (72), Expect = 1.3
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 418 QVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP-PAKTPVKRKAPPMPNKSVSAQHTQ 476
P+PA A P +P + P P+ P A + A
Sbjct: 426 AAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485
Query: 477 PAP 479
AP
Sbjct: 486 AAP 488
Score = 30.0 bits (68), Expect = 4.7
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
AA P P AP PA PA P P P + + QPAP
Sbjct: 416 APAAAAAPAPAAAPQPAPAPAP---APAPPSPAGNAPAGGAPSPPPAAAPS-AQPAP 468
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 30.2 bits (68), Expect = 1.5
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 406 DERARKLIS-LQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPP 464
++ ARK+++ L P+P T PPT +P PA P PA P A P
Sbjct: 72 EQEARKILAPLTPPAPPEPVT------PPTAQ--SPAPAVPTPPPTSTPAVPPAPAAAVP 123
Query: 465 MPNKSVSAQHTQPAP 479
P + P P
Sbjct: 124 AP-AAAPPPSDPPQP 137
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.4 bits (71), Expect = 1.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 422 KPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMP 466
KP+++A P P P V+KPA P K APP
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSS 245
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 30.9 bits (70), Expect = 1.6
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P ++ +P + + +++K PA P KAP S +A PAP
Sbjct: 237 DAAPVPPSEAARPKSAD---AETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAE-PAP 292
Query: 480 VMNDESDEESSKP 492
++ ++KP
Sbjct: 293 KEAAKAAAAAAKP 305
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 31.2 bits (71), Expect = 1.6
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHT 475
Q Q A AP P + KK A +KA + +A+
Sbjct: 207 QAQGAKSATAAPATVPQA-----APLPQAQPKKAATEEELIADAKKAATGEPAANAAKAA 261
Query: 476 QPAPVMNDESDEESSKPMSYFEKQELSLDINKL 508
+P P + ++ ++ + Q + KL
Sbjct: 262 KPEP--MPDDQQKEAEQLQAAIAQAIGGVAGKL 292
Score = 28.9 bits (65), Expect = 9.1
Identities = 15/86 (17%), Positives = 20/86 (23%), Gaps = 7/86 (8%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
P + + A + P AQ KK T P
Sbjct: 200 PPGQAREQAQGAKSATA----APATVPQAAPLPQAQPKKAATEEELIADAKK--AATGEP 253
Query: 453 PAKTPVKRKAPPMPNKSVSAQHTQPA 478
A K PMP+ + Q
Sbjct: 254 AANAAKAAKPEPMPDDQ-QKEAEQLQ 278
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 31.2 bits (71), Expect = 2.0
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 427 AQRKKPPTTPLSAPQPA-SSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
A+RK+P QPA ++ P PPA TP + AP + +A T PA
Sbjct: 519 AERKRPE-------QPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPA 564
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.9 bits (70), Expect = 2.0
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSV------ 446
+ ++ S + S + + S+ + K + A K P+P ++
Sbjct: 223 NDNTPSPKSGSSSPAKP---TSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVR 279
Query: 447 KKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEE 488
KK A P + + + + +SDE
Sbjct: 280 KKAAPESTSQSPSSAEPTSESPQTAGNSSLSSLGDYSDSDES 321
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 30.6 bits (69), Expect = 2.0
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 409 ARKLISLQDQVTPKPATAAQRKKPPT--TPLSAPQPASSVKKPARPPAKTPVKRKA 462
++K S V +P R + P P AP+P K P P A
Sbjct: 131 SQKAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDA 186
>gnl|CDD|219552 pfam07750, GcrA, GcrA cell cycle regulator. GcrA is a master cell
cycle regulator that, together with CtrA (see pfam00072
and pfam00486), is involved in controlling cell cycle
progression and asymmetric polar morphogenesis. During
this process, there are temporal and spatial variations
in the concentrations of GcrA and CtrA. The variation in
concentration produces time and space dependent
transcriptional regulation of modular functions that
implement cell-cycle processes. More specifically, GcrA
acts as an activator of components of the replisome and
the segregation machinery.
Length = 162
Score = 29.8 bits (67), Expect = 2.3
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 418 QVTPKPATAAQRKKPPTTPLSAPQPASSVKK-PARPPAKTPVKRKAPPMPN 467
P A R K P +AP+P++ PA+ ++ AP +
Sbjct: 49 AKPMSPTAAPARPKRAGPPAAAPRPSAGRTALQLELPAEVALEPAAPVVER 99
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 30.6 bits (69), Expect = 2.3
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 17/120 (14%)
Query: 345 DHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSE 404
D D+ + + D DD SS ++ WS D S D +
Sbjct: 267 DFDIYEDSLEYDDPGLES--TDEDDDDDGDSSLQTFKPLLDLTGSSLWSDDEESGDEDGD 324
Query: 405 AD---------ERARKLISLQD-QVTPKPATAAQRKKPPTT-----PLSAPQPASSVKKP 449
+R +L D P T+ P +P P S + P
Sbjct: 325 GSGFAPEPLIKTDSRSNDTLVDLGRGGGSLKLDSVDAPGTSSYLFEPGLSPSPNSGKEMP 384
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 30.9 bits (70), Expect = 2.4
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKR 460
+ + A P+ S +V P + P P KR
Sbjct: 12 LARQSAATTAFSTGPSRSRSGRLVIRAVATPVKKPTTEPPKR 53
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 30.7 bits (69), Expect = 2.4
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHT-QPAPVM 481
PAT + +P + P P+++ P P A P + A+ T P
Sbjct: 205 PATPRPTPRTTASPETTPTPSTTT-SPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPG 263
Query: 482 NDESDEESSKPMSYFEKQELS 502
E+ ++ P + EL+
Sbjct: 264 GGEAPPANATPAPEASRYELT 284
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.4 bits (68), Expect = 2.5
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 426 AAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
A + + PT A QP +V+ PA+ P + P ++ P + QP
Sbjct: 200 APKPTQQPTVQNPAQQP--TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.7 bits (69), Expect = 2.7
Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 26/135 (19%)
Query: 411 KLISL---QDQVTPKPATAA-QRKKPPTTPLSAPQPASSVKKPARP---------PAKTP 457
+LI L V P PA + +KK P L P KP P PA P
Sbjct: 369 RLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAP 428
Query: 458 VKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKPMSYFEKQELSLDINKLPGKKLGRVV 517
+ PP+ +S P+P + + S KP +D+ GK +
Sbjct: 429 TPEQQPPVA-RSAP---LPPSPQASAPRNVASGKP---------GVDLGSWQGKFMNFTR 475
Query: 518 HIIQSREPSLRDSNP 532
+ + + S+
Sbjct: 476 NGSRKQPVQASSSDA 490
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 30.4 bits (69), Expect = 2.9
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPP 464
P+ AA KK +A + + PAK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAA 858
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 30.6 bits (69), Expect = 2.9
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 22/100 (22%)
Query: 380 PTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSA 439
PTL + + + P + +T D P A PP P +
Sbjct: 885 PTLAEALDQV--FGPGTGRVATAPGGDA------------ASAPPPGAG---PPAPPQAV 927
Query: 440 PQPASSVKKPARPPAKTPVKRKAPPMPNKSV----SAQHT 475
P P + + PA PP V A +++ SAQ +
Sbjct: 928 P-PPRTTQPPAAPPRGPDVPPAAVAELRETLADLRSAQRS 966
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 30.7 bits (69), Expect = 2.9
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 420 TPKPATAAQRKKPPT-----TPLSAPQPASSVKK-----PARPPAKTPVKRK--APPMPN 467
+ + +++ PP T P S+ K P RPP+ P+KRK A P
Sbjct: 33 SSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAKLKSPLPPRPPSSNPLKRKLSAETAPE 92
Query: 468 KSVSAQHTQ----PAPVMNDESDEESSKPMS 494
VS + P+ E E + MS
Sbjct: 93 NGVSDSGVKVIVRMKPLNKGEEGEMIVQKMS 123
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.0 bits (68), Expect = 3.3
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
+ ++ + + + P+ Q + P AP+PA +P +
Sbjct: 76 ANAQEHEAARPSPQHQYQPPYA---SAQPRQP-VQQPPEAQVPPQHAPRPAQPAPQPVQQ 131
Query: 453 PAKTPVKRKAPPMPNKSVSAQHTQPAPVM 481
PA P + P+ P PV
Sbjct: 132 PAYQP--QPEQPLQQPVSPQVAPAPQPVH 158
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 30.0 bits (68), Expect = 3.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKI------AKAPD 368
MD Y+ SK F + VR KY P +V A Q FE+ I A +P
Sbjct: 172 YMDLNAYRHSKYFVETVR----EARKYVPSLDQLVIFAGACQSHFESLIRAGANFASSPS 227
Query: 369 DVPI 372
V I
Sbjct: 228 RVNI 231
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 30.3 bits (69), Expect = 3.4
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 111 LPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIIL 148
+P LI + F +W + ILL A +P+ +IL
Sbjct: 127 VPLLILIAIFFFNWA-AAL----ILLITAPLIPLFMIL 159
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.3 bits (69), Expect = 3.4
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 408 RARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPA--SSVKKPARPPAKTPVKRKAPPM 465
R+ KL L+ Q + + K PP S P PA + +P P
Sbjct: 504 RSIKLN-LESQ---SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTA 559
Query: 466 PNKSVSAQHTQPAPVMNDESDEESSKPMSYFEKQELSLDI 505
S +A PA E P + +D
Sbjct: 560 TQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEIDK 599
Score = 29.2 bits (66), Expect = 8.1
Identities = 16/91 (17%), Positives = 26/91 (28%)
Query: 414 SLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQ 473
Q P T + T P P P A A + + P P
Sbjct: 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585
Query: 474 HTQPAPVMNDESDEESSKPMSYFEKQELSLD 504
+ +E D+ + +F + + LD
Sbjct: 586 PSPTKDSSPEEIDKAAKNLADFFNGEIIDLD 616
>gnl|CDD|226868 COG4461, LprI, Uncharacterized protein conserved in bacteria,
putative lipoprotein [Function unknown].
Length = 185
Score = 29.5 bits (66), Expect = 3.4
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 378 MVPTLTVNKNNIGR-WSPDSSSDSTDS----EADERARKLISLQDQVTPKPATAAQRKKP 432
+ + W ++ ++D+ A E+ +S D KP
Sbjct: 58 FAMGRRGALRDAQQSWLKLRNACASDTDCLQRAYEQRLAQLSKADPSIDKPLVLEYGCST 117
Query: 433 PTTPLSAP----QPASSV 446
L+A +
Sbjct: 118 QDGALTAQFYNQFDPKTA 135
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 29.7 bits (67), Expect = 3.9
Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 10/154 (6%)
Query: 326 EFADDVRLIFTNCYKYNPPDHDVVAMA-KKLQDVFETKIAKAPDDVPIVSSSSMVPTLTV 384
+ DDVR IF + YK ++ + F+ ++ + S +
Sbjct: 56 KLLDDVRTIFRDLYKNQLRQEKARTTYDEEFDEYFDQQLRELEK-----ESKKQAKSPKA 110
Query: 385 NKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPAS 444
+ + DS + + + + + + P +TP S+
Sbjct: 111 MRTFEESKKSKKTVDSMIERKPKEPGL--KRKQRKKAQESATSPESSPSSTPNSSRPSTP 168
Query: 445 SVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
+ K P++ +KA + + + S P
Sbjct: 169 HLLKAKEGPSRR--AKKAAKLSSTASSGDEKSPK 200
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 29.4 bits (66), Expect = 4.0
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 394 PDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPP 453
+++ + + A + K + +P+PA A K T + ++ KP
Sbjct: 138 AVAAAAAQAAAAPKAPAKPRA----KSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADK 193
Query: 454 AKTPVKRKAPPMPNK 468
TP K+ K
Sbjct: 194 TATPAKKTTKKKKTK 208
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 29.4 bits (66), Expect = 4.1
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 395 DSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPA 454
D D D + + R+ Q+ P P + P AP P+ KPA A
Sbjct: 76 DMQLDGIDKLSRDEPRRT-EPQE---PDPLDESPASAAPVASAPAPAPSPQSPKPASRRA 131
Query: 455 KTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEE 488
++R AP N S AQ + A +DE ++
Sbjct: 132 SRDMRRIAPFGMNASAPAQ--EAAQASSDEDEDA 163
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 28.5 bits (64), Expect = 4.3
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQ-PASSVKKPARPPAKTPVKRKAPPMPNKSVSAQ----H 474
TP P +A PP+ P + P P V PA PP+ A P Q H
Sbjct: 53 TPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRPQRRLLH 112
Query: 475 TQP 477
T P
Sbjct: 113 TYP 115
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 29.7 bits (66), Expect = 4.4
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 427 AQRKKPPTTPLSAPQP-ASSVKKPARPPAKTPVKRKAP-PMPNKSVSAQHTQPAPVMNDE 484
+K P T P P A +KP A K KAP P SA+ Q P
Sbjct: 176 TPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP----- 230
Query: 485 SDEESSKPMSYFEKQ 499
+ E PM+ K+
Sbjct: 231 KERERRVPMTRLRKR 245
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 29.6 bits (66), Expect = 4.5
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 418 QVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKS 469
A + PP+T + APQ + P + P + P+ +
Sbjct: 31 TTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSST 82
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 29.4 bits (65), Expect = 4.5
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPAR--PPAKTPV-------KRKAPPMP 466
Q + P PA AA P +AP PA + PA PPA P A P P
Sbjct: 79 QSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAP 138
Query: 467 NKSVSAQHTQPAPVMNDESDEESSKPMSY 495
S + PAP + ++KP+
Sbjct: 139 ACPPSTRQCPPAPPLPTPKPAPAAKPIFL 167
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 29.9 bits (67), Expect = 4.5
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 400 STDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPA------SSVKKPARPP 453
S + + AR+ + A AA ++P P++A + A ++ A+P
Sbjct: 262 SPERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPA 321
Query: 454 AKTPVKRKAPPMPNKSVSAQHTQP--APVMNDESDEESSKPMS 494
A K P+ + A AP D+ +++ P S
Sbjct: 322 AADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPAS 364
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 29.7 bits (66), Expect = 4.5
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 417 DQVTPKPATAAQRKKPPTTPLSAPQPASSVK-KPARPPAKTPVKRKAPPMPNKSVSAQHT 475
++ P PA + P P APQ A++ K A +AP + SA
Sbjct: 80 EKFDPAPAPHQAASRAPD-PAVAPQLAAAPKPDAAEAFTSAAQAHEAP--ADAGTSAASK 136
Query: 476 QPAPVMNDESDEESSKPMSYFEKQE 500
+P P + + S P +Y E
Sbjct: 137 KPDPAAHTQH---SPPPFAYTRSME 158
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 29.5 bits (66), Expect = 4.6
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 414 SLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQ 473
S Q + + P P Q P + P P + PP P + AQ
Sbjct: 81 SPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPP-PAQQPQAQ 139
Query: 474 HTQPAPV 480
QP P
Sbjct: 140 QPQPPPQ 146
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT
family of oligopeptide transporters is distinct from the
ABC pfam00005 and PTR pfam00854 transporter families.
OPT transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 29.6 bits (67), Expect = 5.1
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 58 VNGIVQPPT--------VPPPHRPGRNT--NQLAFISKNVLKPVMKHQHAWPFHQPVDAI 107
V +V P + T AF S V V+ + F P A
Sbjct: 474 VGSVVNPGVLNLLNQAYGCTGAQGDSWTCPAPQAFFSAAVAWGVIGGKR---FGLPYYA- 529
Query: 108 DLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLI 146
L FL+ W+L + + A A T+ +
Sbjct: 530 -LLWGFLVGAVAPVLDWLLHKRLPRSLAFAGAGTIGPYL 567
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 29.7 bits (66), Expect = 5.2
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 424 ATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMND 483
A + TP + +P K+ + K P K V +PA V N
Sbjct: 67 ANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAA--KQVEKAPAEPATVSNP 124
Query: 484 ESDEESSKPMSYFEKQELSL 503
++ SS P +Y Q+ +L
Sbjct: 125 DNATSSSTPATYNLLQKSAL 144
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 29.2 bits (66), Expect = 5.3
Identities = 12/63 (19%), Positives = 15/63 (23%), Gaps = 5/63 (7%)
Query: 418 QVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQP 477
V P P P P K + + P K P P +
Sbjct: 89 TVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKP-----VVEEKA 143
Query: 478 APV 480
AP
Sbjct: 144 APT 146
>gnl|CDD|178752 PLN03213, PLN03213, repressor of silencing 3; Provisional.
Length = 759
Score = 29.4 bits (65), Expect = 5.7
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 355 LQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPD---------------SSSD 399
L D+ + + +V +++S V KNNI D SS +
Sbjct: 176 LHDLEALNVGRNEAEVNVMNS---VMNKLFEKNNIDIAEEDNEIEADQDNLIINVASSGN 232
Query: 400 STDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVK 459
DS D+ +RK S+ ++ TP ++ +K S + S+++ R + ++
Sbjct: 233 DMDSALDKLSRKRKSILNEKTPSEEGYSEGRKGNHIHPSKKRQTISLEESGRQESSQAIR 292
Query: 460 RKAPP---MPNKS 469
K P +P+KS
Sbjct: 293 EKKKPSEVVPDKS 305
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 29.5 bits (67), Expect = 5.7
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 417 DQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMP 466
PA AA+ +A + PA P A P +P
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.6 bits (66), Expect = 5.8
Identities = 27/141 (19%), Positives = 40/141 (28%), Gaps = 22/141 (15%)
Query: 364 AKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADER--ARKLISLQDQVTP 421
+AP P+ ++S P + + + S E+ A L + P
Sbjct: 122 RQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQ-EHALSAVPEQLFADFLTTAPVPRAP 180
Query: 422 KPATAAQRKKP-PTTPLSAPQPASSVKK-----------------PARPPAKTPVKRKAP 463
A P P + A+ + PPA P AP
Sbjct: 181 VQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAP 240
Query: 464 PMPNKSVSAQHTQPAPVMNDE 484
P + PAP NDE
Sbjct: 241 AAPAALAAVAAAAPAP-QNDE 260
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 29.4 bits (66), Expect = 5.9
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 374 SSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVT------------P 421
S S + + + G+ SSS S D + ER K + P
Sbjct: 89 SPSVLDLSPVLASPQTGKRR-RSSSPSDDEDEAERPSKRPRSDSISSSSSPAKPPEACLP 147
Query: 422 KPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRK 461
PA + Q + + P P+ S A + KRK
Sbjct: 148 SPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPS-GKRK 186
>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains. Protein
domain with at least 5 transmembrane alpha-helices.
Lag1p and Lac1p are essential for acyl-CoA-dependent
ceramide synthesis, TRAM is a subunit of the translocon
and the CLN8 gene is mutated in Northern epilepsy
syndrome. The family may possess multiple functions such
as lipid trafficking, metabolism, or sensing. Trh
homologues possess additional homeobox domains.
Length = 205
Score = 28.8 bits (65), Expect = 5.9
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 113 FLIFRFLVFQHWVLSMYIEYPIL-------LAFALTVPVLIILQ 149
F +FR ++F +L++ + Y L + L + +L+ LQ
Sbjct: 143 FFVFRLILFPFLILTVTVHYAQAESGLFPPLLYLLFLLLLLCLQ 186
>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme. This family of enzymes
are related to pfam03919.
Length = 327
Score = 29.3 bits (66), Expect = 6.0
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 144 VLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN-----KPGE 198
+ D +IK K N Y+ E F YVYN
Sbjct: 183 FIGTTPDGDFIIKKLTATFVEHKSFGNSIYYVSFEKDPPR-PPFGIKYVYNLEDMVTDVP 241
Query: 199 DVVVMAQTLEKLF 211
+ +V +TL +L
Sbjct: 242 EYLVPFETLVELA 254
>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
Length = 472
Score = 29.4 bits (66), Expect = 6.0
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 12/62 (19%)
Query: 425 TAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDE 484
A K P P + +P P A PP P A P V +DE
Sbjct: 87 EPASPLKVPEMPTGPASAPLPIARPDNPDA--------PPTP----PANPGNPGQVNDDE 134
Query: 485 SD 486
+
Sbjct: 135 AQ 136
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 29.1 bits (65), Expect = 6.0
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 418 QVTPKPAT-AAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNK 468
+ TP AAQ KP P P A K +P K + A P
Sbjct: 100 ESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQA 151
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 28.6 bits (64), Expect = 6.1
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 401 TDSEADERARKLISLQD-----QVTPKPATAAQRKKPPTT----PLSAPQPASSVKKPAR 451
T +A+E+A+KL D P+ A R P T S +PA + +
Sbjct: 38 TMEQANEKAKKLEQSSDAKPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQK 97
Query: 452 PPAKTPVKRKAPPMPNKSVSAQHTQPAPV 480
A P+ A + + T P
Sbjct: 98 LLAPRPLFTAAREVKTVVPVSSVTPVTPP 126
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 29.4 bits (66), Expect = 6.2
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 396 SSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAK 455
S+ T E ++ + + PKP K P P +K P P +
Sbjct: 231 RDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTE-EELKSPEASPKE 289
Query: 456 TPVKRKAPPMP-NKSVSAQHTQPAPV 480
+ P S S + P P+
Sbjct: 290 SEEASARKRSPSLLSPSPKAESPKPL 315
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 29.3 bits (66), Expect = 6.2
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
+ ++++Q P +T + S P+ P+ + + P P
Sbjct: 15 SSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQT 74
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 29.1 bits (65), Expect = 6.3
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSV 470
A +KK T +SA + A + K A+ KT +KA K+V
Sbjct: 220 KSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTA--KKALKKAAKAV 267
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 29.0 bits (65), Expect = 6.5
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 384 VNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPA 443
V+ +I R+ + D T + K++S + + R P Q
Sbjct: 74 VSDEDINRFLTKTFEDKTQVKV-----KVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAE 128
Query: 444 SSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKPMSYFEKQELSL 503
SS KP + + KAP +Q + +++ + + F++ E L
Sbjct: 129 SSGSKPVPSIPVSTPEVKAPAP--ALTPSQKDRLETLLSPKDKISLNSEKPKFKELESEL 186
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 29.2 bits (65), Expect = 6.6
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 418 QVTPKP-ATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQ-HT 475
QV P+P T + P PL PA + P + P P+ + A T
Sbjct: 312 QVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDT 371
Query: 476 QPAPVMNDESDEESSKPMSYFEKQ 499
P +S +P K+
Sbjct: 372 DGQPGTRPDSPAVPDRPNGRHRKE 395
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 28.9 bits (64), Expect = 6.8
Identities = 19/107 (17%), Positives = 39/107 (36%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
+P+++ + T + E+ + + + AT A +++ T + P + V P
Sbjct: 79 APNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPST 138
Query: 453 PAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESDEESSKPMSYFEKQ 499
P++ P Q ++ +KP FEKQ
Sbjct: 139 NTPQPMQSTKSDTPQSPTIKQAQTDMTPKYEDLRAYYTKPSFEFEKQ 185
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 27.9 bits (62), Expect = 6.8
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 404 EADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAP 463
E AR SL P + KKP SA + + + A T V R P
Sbjct: 26 EDARGARSNSSLNQADFPSVSIVGLNKKPKKI--SAEEAEKKLLQKKEKKALTNVLRPEP 83
Query: 464 PMPNKSV 470
P + V
Sbjct: 84 RSPRRCV 90
>gnl|CDD|237242 PRK12874, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 28.8 bits (65), Expect = 6.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 113 FLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDY 151
F++ L+F + Y P LAF L+ P LI+L Y
Sbjct: 99 FIVLNALIF---IGVSYFINP--LAFKLSFPFLIVLGGY 132
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.9 bits (65), Expect = 7.0
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 397 SSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKT 456
+ T S +D D P T+ T P A S RP A +
Sbjct: 299 EPEPTGSVSDRPR---HLSSDSSPSPPDTSDSDPSTETPPP-ASLSHSPPAAFERPLALS 354
Query: 457 PVKRKAPPMPNK 468
P +++ K
Sbjct: 355 PKRKREGDKKQK 366
>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional.
Length = 226
Score = 28.7 bits (64), Expect = 8.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 426 AAQRKKPPTTPLSAPQPASSVKKPARPP 453
A+ + K TP P+ +P R P
Sbjct: 187 ASPQPKSLATPPPVAAPSRRTPRPRRKP 214
>gnl|CDD|219130 pfam06674, DUF1176, Protein of unknown function (DUF1176). This
family consists of several hypothetical bacterial
proteins of around 340 residues in length. Members of
this family contain six highly conserved cysteine
residues. The function of this family is unknown.
Length = 338
Score = 28.9 bits (65), Expect = 8.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 424 ATAAQRK--KPPTTPLSAPQPASSVKKPARPPAKTPV 458
TA RK KP ++ AP P ++ PPA P+
Sbjct: 152 VTALVRKGTKPASSVPPAP-PLPVIRAAPAPPAAAPL 187
>gnl|CDD|219262 pfam07001, BAT2_N, BAT2 N-terminus. This family represents the
N-terminus (approximately 200 residues) of the
proline-rich protein BAT2. BAT2 is similar to other
proteins with large proline-rich domains, such as some
nuclear proteins, collagens, elastin, and synapsin.
Length = 189
Score = 28.3 bits (63), Expect = 8.7
Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 414 SLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMP------- 466
S QDQ PK + A PP TP S P S + PP P P
Sbjct: 89 SKQDQSDPKSSDAL----PPQTPESQPPAVSQTSASSPPPPPQPATPLVPGGAKSWAVAS 144
Query: 467 NKSVSAQHTQPAPVMNDESDEE 488
K + A ++ S EE
Sbjct: 145 AKPGAQGDGGRASQLSSFSHEE 166
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 28.9 bits (64), Expect = 9.3
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 408 RARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVK---KPARPPAKTPVKRKAPP 464
+ +S Q+ P A + +A A S++ + PP K KA
Sbjct: 420 KTAGPVSNQENNDVPPWEDAPDEAQTAAG-TAQTSAKSIQTASEAETPPENQVSKNKAAD 478
Query: 465 MPNKSVSAQHTQPAPVMNDESDE 487
+ ++ P+ +DE
Sbjct: 479 NETDAPLSEVPSENPIQATPNDE 501
>gnl|CDD|192330 pfam09676, TraV, Type IV conjugative transfer system lipoprotein
(TraV). This entry includes TraV, which is a component
of conjugative type IV secretion system. TraV is an
outer membrane lipoprotein that is believed to interact
with the secretin TraK. The alignment contains three
conserved cysteines in the N-terminal half.
Length = 112
Score = 27.5 bits (61), Expect = 9.5
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 403 SEADERARKLISLQDQVTPKPATAAQRKKPPTTP---LSAPQPASSVKKPARPPAKTPV 458
SE A P A + +P ++ AS+V ARP + P+
Sbjct: 18 SEIYANALGGELPSRLAKPAAAGLPRLAEPAAGSGPSVTVTPAASAVPLAARPLPRRPL 76
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 28.5 bits (64), Expect = 9.5
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 421 PKPATAA---QRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQP 477
PK A KP P P+P V++ + K R P P ++ +
Sbjct: 85 PKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR--PASPFENTAPARPTS 142
Query: 478 AP 479
+
Sbjct: 143 ST 144
>gnl|CDD|234184 TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119
family. This protein family is one of two related
families in type VI secretion systems that contain an
ImpA-related N-terminal domain (pfam06812) [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 301
Score = 28.5 bits (64), Expect = 9.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPASSVKKPARPP 453
+ A PT P SAP PA++ P P
Sbjct: 1 QRAQNEAAPAAVPTAPASAPAPATTAAAPQPPE 33
>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. This model is designed to identify biotin
carboxyl carrier protein as a peptide of acetyl-CoA
carboxylase. Scoring below the trusted cutoff is a
related protein encoded in a region associated with
polyketide synthesis in the prokaryote Saccharopolyspora
hirsuta, and a reported chloroplast-encoded biotin
carboxyl carrier protein that may be highly derived from
the last common ancestral sequence. Scoring below the
noise cutoff are biotin carboxyl carrier domains of
other enzymes such as pyruvate carboxylase.The gene name
is accB or fabE [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 156
Score = 27.9 bits (62), Expect = 9.8
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 443 ASSVKKPARPPAKTPVKRKAPPMPNKSV-SAQHTQPAPVMNDESDEESSKPM 493
A++ KK A A PV + P P+ + PAP D+ PM
Sbjct: 36 AAAAKKSAVQQAAAPVPAQVPAAPSAQAPAPAVCAPAPAKADKKGHFVRSPM 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,942,092
Number of extensions: 2837475
Number of successful extensions: 3661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3127
Number of HSP's successfully gapped: 383
Length of query: 566
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 464
Effective length of database: 6,413,494
Effective search space: 2975861216
Effective search space used: 2975861216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.9 bits)