RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy245
(566 letters)
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 214 bits (546), Expect = 7e-66
Identities = 60/299 (20%), Positives = 117/299 (39%), Gaps = 64/299 (21%)
Query: 72 RPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIE 131
R L+ I ++++ + + +PFH PV+A
Sbjct: 7 RRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAK-----------------------V 43
Query: 132 YPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCY 191
DY+K+I PMDL T+++ + Y S +E + N
Sbjct: 44 VK----------------DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSA 87
Query: 192 VYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQ 251
YN P + ++Q++ L K+ + + +++K
Sbjct: 88 TYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN--------------------P 127
Query: 252 GSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGT 311
++ S N + +++ + S WPF+ PV+ ++ DY+++I PMDL T
Sbjct: 128 LLDDDDQVAFSFILDNIVTQKMMAVPDS---WPFHHPVNKKFVP--DYYKVIVNPMDLET 182
Query: 312 VKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370
++ + +Y+S + F DDV LI N KYN P+ A+++ +V + + + +
Sbjct: 183 IRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 241
Score = 121 bits (304), Expect = 3e-31
Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 39/194 (20%)
Query: 41 LSNGGEPPAREEPRLEPVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPF 100
+S E+ + + + P + V + +M +WPF
Sbjct: 99 ISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPF 158
Query: 101 HQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMD 160
H PV+ P DY+KVI +PMD
Sbjct: 159 HHPVNKK-----------------------FVP----------------DYYKVIVNPMD 179
Query: 161 LGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220
L TI+K + Y S + + D N + N YN P AQ + + ++ E
Sbjct: 180 LETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 239
Query: 221 SGRQIKKPNRGSDE 234
Q++K + E
Sbjct: 240 HLTQLEKDICTAKE 253
Score = 116 bits (292), Expect = 2e-29
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 255 AKPKLTESLKYCNEILKELFSK-KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVK 313
+ T+ + + IL+ + + + +PF+ PV+A + DY++II +PMDL T++
Sbjct: 4 IHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLR 61
Query: 314 AKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKI 363
+ R Y S +EF + + LI N YN P H + +++ + D+ + K+
Sbjct: 62 ENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKL 111
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 212 bits (542), Expect = 7e-65
Identities = 62/325 (19%), Positives = 121/325 (37%), Gaps = 64/325 (19%)
Query: 46 EPPAREEPRLEPVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVD 105
P + + P R L+ I ++++ + + +PFH PV+
Sbjct: 14 PPKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVN 73
Query: 106 AIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIK 165
A DY+K+I PMDL T++
Sbjct: 74 AK-----------------------VVK----------------DYYKIITRPMDLQTLR 94
Query: 166 KRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQI 225
+ + Y S +E + N YN P + ++Q++ L K+ + + ++
Sbjct: 95 ENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARL 154
Query: 226 KKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPF 285
+K ++ S N + +++ + S WPF
Sbjct: 155 EKAIN--------------------PLLDDDDQVAFSFILDNIVTQKMMAVPDS---WPF 191
Query: 286 YKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPD 345
+ PV+ ++ DY+++I PMDL T++ + +Y+S + F DDV LI N KYN P+
Sbjct: 192 HHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 249
Query: 346 HDVVAMAKKLQDVFETKIAKAPDDV 370
A+++ +V + + + +
Sbjct: 250 SQYTKTAQEIVNVCYQTLTEYDEHL 274
Score = 117 bits (293), Expect = 2e-29
Identities = 37/187 (19%), Positives = 59/187 (31%), Gaps = 39/187 (20%)
Query: 42 SNGGEPPAREEPRLEPVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFH 101
S E+ + + + P + V + +M +WPFH
Sbjct: 133 SQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFH 192
Query: 102 QPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDL 161
PV+ P DY+KVI +PMDL
Sbjct: 193 HPVNKK-----------------------FVP----------------DYYKVIVNPMDL 213
Query: 162 GTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRES 221
TI+K + Y S + + D N + N YN P AQ + + ++ E
Sbjct: 214 ETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEH 273
Query: 222 GRQIKKP 228
Q++K
Sbjct: 274 LTQLEKD 280
Score = 112 bits (281), Expect = 8e-28
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 221 SGRQIKKPNRGSD-EGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSK-KH 278
S +K P + + + + T+ + + IL+ + + +
Sbjct: 2 SHMVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRD 61
Query: 279 SSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNC 338
+PF+ PV+A + DY++II +PMDL T++ + R Y S +EF + + LI N
Sbjct: 62 LPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNS 119
Query: 339 YKYNPPDHDVVAMAKKLQDVFETK 362
YN P H + +++ + D+ + K
Sbjct: 120 ATYNGPKHSLTQISQSMLDLCDEK 143
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 196 bits (501), Expect = 4e-61
Identities = 73/115 (63%), Positives = 97/115 (84%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
K++E LK C+ ILKE+F+KKH++YAWPFYKPVD LGL+DY +IIK PMD+ T+K+K
Sbjct: 4 GSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSK 63
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370
+++REY+ ++EF DVRL+F+NCYKYNPPDH+VVAMA+KLQDVFE + AK PD+
Sbjct: 64 LESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118
Score = 133 bits (337), Expect = 2e-37
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 72 RPGRNTNQLAFISKNVLKPVMKHQH---AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSM 128
+ + QL +LK + +H AWPF++PVD L L
Sbjct: 3 MGSKISEQLKCC-SGILKEMFAKKHAAYAWPFYKPVDVEALGLH---------------- 45
Query: 129 YIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFT 188
DY +IKHPMD+ TIK +LE+ Y +E +D MF+
Sbjct: 46 ---------------------DYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFS 84
Query: 189 NCYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220
NCY YN P +VV MA+ L+ +F + + +
Sbjct: 85 NCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 189 bits (481), Expect = 5e-58
Identities = 74/114 (64%), Positives = 97/114 (85%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
K++E LK C+ ILKE+F+KKH++YAWPFYKPVD LGL+DY +IIK PMD+ T+K+K
Sbjct: 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSK 76
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
++AREY+ ++EF DVRL+F+NCYKYNPPDH+VVAMA+KLQDVFE + AK PD+
Sbjct: 77 LEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130
Score = 134 bits (339), Expect = 1e-37
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 41/162 (25%)
Query: 58 VNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQH---AWPFHQPVDAIDLNLPFL 114
+ + P P + + + QL +LK + +H AWPF++PVD L L
Sbjct: 2 MKDVPDSQQHPAPEKSSKVSEQLKCC-SGILKEMFAKKHAAYAWPFYKPVDVEALGLH-- 58
Query: 115 IFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYW 174
DY +IKHPMD+ TIK +LE Y
Sbjct: 59 -----------------------------------DYCDIIKHPMDMSTIKSKLEAREYR 83
Query: 175 SGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVS 216
+E +D MF+NCY YN P +VV MA+ L+ +F + +
Sbjct: 84 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFA 125
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 186 bits (474), Expect = 9e-55
Identities = 55/363 (15%), Positives = 100/363 (27%), Gaps = 62/363 (17%)
Query: 44 GGEPPAREEPR-LEPVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQ 102
G +P + L P + + P + ++F ++ F +
Sbjct: 1 GIDPFTVDYNAPLNPKSELFLDDWHIP-----KFNRFISFTLDVLID--KYKDIFKDFIK 53
Query: 103 PVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLG 162
+P Y+ I+ PM +
Sbjct: 54 LPSRK-----------------------FHP----------------QYYYKIQQPMSIN 74
Query: 163 TIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESG 222
IK R Y + D + NC YN+ +V + + L +V +
Sbjct: 75 EIKSRDYE-YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLK 133
Query: 223 RQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYA 282
R + + T + + +
Sbjct: 134 RNYLINSEVKAKLLHYLNKLVDAT------------EKKINQALLGASSPKNLDDKVKLS 181
Query: 283 WPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYN 342
PF + VD L +Y+EI+ PM L VK ++ +Y +F D+ L+F N + +N
Sbjct: 182 EPFMELVDKDELP--EYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN 239
Query: 343 PPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTD 402
P + A L + F I K + L +K +
Sbjct: 240 DPSALIYKDATTLTNYFNYLIQKEFFPELQDLNERGEINLEFDKFEFENYLAIGGGGPAA 299
Query: 403 SEA 405
+ A
Sbjct: 300 AGA 302
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 170 bits (432), Expect = 5e-51
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMD 317
K E + L+ L+ + + PF +PVD LG+ DY +I+K PMDL T+K K+D
Sbjct: 8 KPEELRQALMPTLEALY--RQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD 65
Query: 318 AREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370
+Y+ ++ DDV L+F N + YN V KL +VFE +I +
Sbjct: 66 TGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118
Score = 122 bits (309), Expect = 2e-33
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 38/138 (27%)
Query: 85 KNVLKPVMK-HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVP 143
L+ + + + PF QPVD L +P
Sbjct: 17 MPTLEALYRQDPESLPFRQPVDPQLLGIP------------------------------- 45
Query: 144 VLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVM 203
DY ++K+PMDL TIK++L+ Y + + D MF N ++YN+ V
Sbjct: 46 ------DYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKF 99
Query: 204 AQTLEKLFLTKVSARRES 221
L ++F ++ +S
Sbjct: 100 CSKLAEVFEQEIDPVMQS 117
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 176 bits (446), Expect = 3e-50
Identities = 51/355 (14%), Positives = 95/355 (26%), Gaps = 60/355 (16%)
Query: 20 KVAKAGTRSIDPKSMDEKDFALSNGGEPPAREEPRLEPVNGIVQPPTVPPPHRPGRNTNQ 79
K + G + + + + + + P+ + V P +
Sbjct: 15 KAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQEKTPHVDYNAPLNPKSELFLDDW 74
Query: 80 LAFISKNVLKPVMK------HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYP 133
+ + F + +P
Sbjct: 75 HIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRK-----------------------FHP 111
Query: 134 ILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVY 193
Y+ I+ PM + IK R Y + D + NC Y
Sbjct: 112 ----------------QYYYKIQQPMSINEIKSRDYE-YEDGPSNFLLDVELLTKNCQAY 154
Query: 194 NKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGS 253
N+ +V + + L +V + R + + T
Sbjct: 155 NEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDAT------- 207
Query: 254 YAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVK 313
+ + + PF + VD L +Y+EI+ PM L VK
Sbjct: 208 -----EKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELP--EYYEIVHSPMALSIVK 260
Query: 314 AKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368
++ +Y +F D+ L+F N + +N P + A L + F I K
Sbjct: 261 QNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFF 315
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 164 bits (417), Expect = 6e-49
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
K ++ L C+ IL E+ + + AWPF PV+ + Y ++IKKPMD T++ K
Sbjct: 8 KRDDSKDLALCSMILTEMETHED---AWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREK 62
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367
+ + +Y + + FA DVRL+F NC +N D D+ ++ FE K
Sbjct: 63 LSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114
Score = 128 bits (325), Expect = 1e-35
Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 39/145 (26%)
Query: 70 PHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMY 129
+P R+ ++ + +L + H+ AWPF PV+
Sbjct: 4 VKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKL--------------------- 42
Query: 130 IEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTN 189
VP Y KVIK PMD TI+++L + Y + + D +F N
Sbjct: 43 ------------VP------GYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDN 84
Query: 190 CYVYNKPGEDVVVMAQTLEKLFLTK 214
C +N+ D+ + K F K
Sbjct: 85 CETFNEDDSDIGRAGHNMRKYFEKK 109
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 161 bits (410), Expect = 7e-48
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 255 AKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
+ K C E++ +F + + PF +PVD + DY +II PMD GTV+
Sbjct: 4 TNYVESNWKKQCKELVNLIFQCED---SEPFRQPVD--LVEYPDYRDIIDTPMDFGTVRE 58
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDH-DVVAMAKKLQDVFETKIAKAPDDVPI 372
+DA Y S EF D+RLIF+N Y P + +M +L +FE K+ K D I
Sbjct: 59 TLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117
Score = 113 bits (286), Expect = 3e-30
Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 40/146 (27%)
Query: 85 KNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPV 144
K ++ + + + + PF QPVD + P
Sbjct: 16 KELVNLIFQCEDSEPFRQPVDL--VEYP-------------------------------- 41
Query: 145 LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN-KPGEDVVVM 203
DY +I PMD GT+++ L+ Y S E D +F+N Y + M
Sbjct: 42 -----DYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSM 96
Query: 204 AQTLEKLFLTKVSARRESGRQIKKPN 229
L LF K+ + +K N
Sbjct: 97 TLRLSALFEEKMKKISSDFKIGQKFN 122
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 159 bits (405), Expect = 4e-47
Identities = 76/153 (49%), Positives = 95/153 (62%), Gaps = 37/153 (24%)
Query: 64 PPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQH 123
PP P++P R TNQL ++ + VLK + KHQ AWPF QPVDA+ LNLP
Sbjct: 6 PPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLP----------- 54
Query: 124 WVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDF 183
DY+K+IK PMD+GTIKKRLEN YYW+ +E I DF
Sbjct: 55 --------------------------DYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 184 NTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVS 216
NTMFTNCY+YNKPG+D+V+MA+ LEKLFL K++
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
Score = 158 bits (401), Expect = 2e-46
Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 256 KPKLTESLKY-CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
+ T L+Y +LK L+ + +AWPF +PVDA L L DY++IIK PMD+GT+K
Sbjct: 15 PKRQTNQLQYLLRVVLKTLWKHQ---FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKK 71
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
+++ Y +++E D +FTNCY YN P D+V MA+ L+ +F KI + P +
Sbjct: 72 RLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 160 bits (407), Expect = 8e-47
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Query: 256 KPKLTESL-KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
+ + N+++ L + F K VDA DY+++IK PM +K
Sbjct: 15 YFQGNKQWYLLANQLILSLSKYEG---GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKT 71
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVS 374
K+ +Y EF DV+LIF NC YN + V K ++ F ++ + I+
Sbjct: 72 KLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNNFILK 131
Query: 375 SSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADE 407
+ L + + +WS + + + E
Sbjct: 132 EKKINDMLKLVEEENIKWSKEKEDQIEEIDELE 164
Score = 145 bits (367), Expect = 3e-41
Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 38/200 (19%)
Query: 63 QPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQ 122
+ + + Q ++ ++ + K++ F + VDA N P
Sbjct: 5 HHHSSGRENLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCP---------- 54
Query: 123 HWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISD 182
DY+ VIK+PM IK +L+ Y E + D
Sbjct: 55 ---------------------------DYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKD 87
Query: 183 FNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQLA 242
+F NC +YN V + + +E F ++ + I K + +D +
Sbjct: 88 VQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYN-NFILKEKKINDMLKLVEEEN 146
Query: 243 TSVTSVGDQGSYAKPKLTES 262
+ + +L +
Sbjct: 147 IKWSKEKEDQIEEIDELENN 166
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 157 bits (400), Expect = 5e-46
Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 37/166 (22%)
Query: 63 QPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQ 122
+ + P +PGR TNQL ++ K V+K + KHQ AWPF QPVDA+ L LP
Sbjct: 16 RGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLP---------- 65
Query: 123 HWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISD 182
DYHK+IK PMD+GTIK+RLEN YYW+ E + D
Sbjct: 66 ---------------------------DYHKIIKQPMDMGTIKRRLENNYYWAASECMQD 98
Query: 183 FNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKKP 228
FNTMFTNCY+YNKP +D+V+MAQTLEK+FL KV++ + +++
Sbjct: 99 FNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVT 144
Score = 156 bits (395), Expect = 2e-45
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 4/114 (3%)
Query: 256 KPKLTESLKYCNE-ILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
++T L+Y ++ ++K L+ + +AWPF +PVDA LGL DYH+IIK+PMD+GT+K
Sbjct: 26 PGRVTNQLQYLHKVVMKALWKHQ---FAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKR 82
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPD 368
+++ Y ++ E D +FTNCY YN P D+V MA+ L+ +F K+A P
Sbjct: 83 RLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQ 136
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 157 bits (398), Expect = 5e-46
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
+ K C E+L +F + S PF +PVD L DY +II PMD TV+
Sbjct: 16 SYDIQAWKKQCEELLNLIFQCEDS---EPFRQPVD--LLEYPDYRDIIDTPMDFATVRET 70
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDH-DVVAMAKKLQDVFETKIAKAPDD 369
++A Y+S E DVRLIF+N Y P + +M+ +L FE I+ D
Sbjct: 71 LEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSD 125
Score = 113 bits (284), Expect = 8e-30
Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 41/156 (26%)
Query: 63 QPPTVPPPHRP-GRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVF 121
P +R + + +L + + + + PF QPVD L P
Sbjct: 4 HQPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDL--LEYP--------- 52
Query: 122 QHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAIS 181
DY +I PMD T+++ LE Y S E
Sbjct: 53 ----------------------------DYRDIIDTPMDFATVRETLEAGNYESPMELCK 84
Query: 182 DFNTMFTNCYVYNKP-GEDVVVMAQTLEKLFLTKVS 216
D +F+N Y + M+ L F +S
Sbjct: 85 DVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHIS 120
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 154 bits (391), Expect = 3e-45
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
+PK IL EL + H+ AWPF +PV+ + DY++ IK+PMDL T++ K
Sbjct: 8 RPKRGPHDAAIQNILTEL--QNHA-AAWPFLQPVNK--EEVPDYYDFIKEPMDLSTMEIK 62
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIV 373
+++ +Y+ ++F D RL+F NC YN + A +L+ F K+ + P+ ++
Sbjct: 63 LESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLI 120
Score = 138 bits (351), Expect = 2e-39
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 41/151 (27%)
Query: 70 PHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMY 129
RP R + A +N+L + H AWPF QPV+ +
Sbjct: 6 AQRPKRGPHDAAI--QNILTELQNHAAAWPFLQPVNKEE--------------------- 42
Query: 130 IEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTN 189
VP DY+ IK PMDL T++ +LE+ Y ++ I D +F N
Sbjct: 43 ------------VP------DYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNN 84
Query: 190 CYVYNKPGEDVVVMAQTLEKLFLTKVSARRE 220
C +YN A LEK F KV E
Sbjct: 85 CRMYNGENTSYYKYANRLEKFFNNKVKEIPE 115
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 153 bits (389), Expect = 1e-44
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 243 TSVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEI 302
+S +S + + C +L L+ + S F PV L + DY++I
Sbjct: 2 SSGSSGKKKTEGLVKLTPIDKRKCERLLLFLYCHEMS---LAFQDPVP---LTVPDYYKI 55
Query: 303 IKKPMDLGTVKAKM--DAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFE 360
IK PMDL T+K ++ D Y ++F D RLIF NC ++N PD +V KL++ FE
Sbjct: 56 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFE 115
Query: 361 TKIAKAPDD 369
+ +
Sbjct: 116 ELLKNLYPE 124
Score = 126 bits (319), Expect = 1e-34
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 42/149 (28%)
Query: 69 PPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSM 128
+ T + +L + H+ + F PV L +P
Sbjct: 10 KTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVP---LTVP---------------- 50
Query: 129 YIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFY--YWSGKEAISDFNTM 186
DY+K+IK+PMDL TIKKRL+ Y Y ++ ++DF +
Sbjct: 51 ---------------------DYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLI 89
Query: 187 FTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
F NC +N+P +V LE F +
Sbjct: 90 FQNCAEFNEPDSEVANAGIKLENYFEELL 118
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 148 bits (375), Expect = 6e-43
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMD 317
+L + ++L + + K +WPF +PVD +Y++IIK PMD+ +++ K++
Sbjct: 13 ELDDDFTAMYKVLDVVKAHKD---SWPFLEPVDE--SYAPNYYQIIKAPMDISSMEKKLN 67
Query: 318 AREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAK 365
Y + +EF +D++ +F NC KYN + M+ L+ F + K
Sbjct: 68 GGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115
Score = 130 bits (328), Expect = 3e-36
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 39/131 (29%)
Query: 85 KNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPV 144
VL V H+ +WPF +PVD P
Sbjct: 22 YKVLDVVKAHKDSWPFLEPVDESY---------------------------------AP- 47
Query: 145 LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMA 204
+Y+++IK PMD+ +++K+L Y + +E ++D TMF NC YN + M+
Sbjct: 48 -----NYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMS 102
Query: 205 QTLEKLFLTKV 215
LE+ F +
Sbjct: 103 DNLERCFHRAM 113
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 145 bits (367), Expect = 1e-41
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 255 AKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
A+ + T + L++L K F PV A Y IIK PMD GT+K
Sbjct: 7 AENESTPIQQLLEHFLRQLQRKDP---HGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKD 61
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKA 366
K+ A EYKS EF D +L+ N YN PD +AKK+ ++K
Sbjct: 62 KIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKE 113
Score = 118 bits (299), Expect = 4e-32
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 39/143 (27%)
Query: 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILL 136
+ + + ++ L+ + + F PV
Sbjct: 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI---------------------------- 42
Query: 137 AFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP 196
P Y +IKHPMD GT+K ++ Y S E +DF M N YN+P
Sbjct: 43 -----AP------GYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP 91
Query: 197 GEDVVVMAQTLEKLFLTKVSARR 219
+A+ + +S R
Sbjct: 92 DTVYYKLAKKILHAGFKMMSKER 114
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 143 bits (362), Expect = 4e-41
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 258 KLTESLKY-CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKM 316
+ + L +L ++ S AWPF +PV DY+E+I+ P+DL T+ ++
Sbjct: 3 EDPDQLYTTLKNLLAQIKSHPS---AWPFMEPVKK--SEAPDYYEVIRFPIDLKTMTERL 57
Query: 317 DAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367
+R Y + K F D++ + NC +YNPPD + A L+ F K+ +
Sbjct: 58 RSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKEGG 108
Score = 140 bits (354), Expect = 7e-40
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 39/141 (27%)
Query: 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPI 134
+ +QL KN+L + H AWPF +PV +
Sbjct: 3 EDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE-------------------------- 36
Query: 135 LLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN 194
P DY++VI+ P+DL T+ +RL + YY + K ++D + NC YN
Sbjct: 37 -------AP------DYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83
Query: 195 KPGEDVVVMAQTLEKLFLTKV 215
P + A LEK F K+
Sbjct: 84 PPDSEYCRCASALEKFFYFKL 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 143 bits (361), Expect = 3e-40
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
P + + +L+ L + K AWPF +PVD DY+ +IK+PMDL T++ +
Sbjct: 67 TPLTEKDYEGLKRVLRSLQAHKM---AWPFLEPVDPN--DAPDYYGVIKEPMDLATMEER 121
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367
+ R Y+ EF D+ IF NC YNP D A+ L+ F K+
Sbjct: 122 VQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
Score = 138 bits (348), Expect = 2e-38
Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 39/169 (23%)
Query: 47 PPAREEPRLEPVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDA 106
E ++ T T + K VL+ + H+ AWPF +PVD
Sbjct: 40 ILQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDP 99
Query: 107 IDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKK 166
D P DY+ VIK PMDL T+++
Sbjct: 100 ND---------------------------------AP------DYYGVIKEPMDLATMEE 120
Query: 167 RLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
R++ YY E ++D +F NC YN A+ LE F+ K+
Sbjct: 121 RVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKL 169
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 140 bits (354), Expect = 9e-40
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 252 GSYAKP--KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDL 309
GS L E + ++ K L + K F KPV DY E+IK+PMDL
Sbjct: 1 GSSGSSGNTLRELRLFLRDVTKRLATDKR---FNIFSKPVS-------DYLEVIKEPMDL 50
Query: 310 GTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPP----DHDVVAMAKKLQDVFETKIAK 365
TV K+D Y ++K+F D+ LI +N +YNP D + A L+D IA
Sbjct: 51 STVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110
Query: 366 APD 368
D
Sbjct: 111 ELD 113
Score = 109 bits (274), Expect = 1e-28
Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 44/152 (28%)
Query: 70 PHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMY 129
G +L ++V K + + F +PV
Sbjct: 3 SGSSGNTLRELRLFLRDVTKRLATDKRFNIFSKPVS------------------------ 38
Query: 130 IEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTN 189
DY +VIK PMDL T+ +++ Y + K+ + D + + +N
Sbjct: 39 --------------------DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSN 78
Query: 190 CYVYNKPGEDVVVMAQTLEKLFLTKVSARRES 221
YN + + + A +
Sbjct: 79 ALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 139 bits (351), Expect = 2e-39
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 255 AKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
+ L + L++L K F +PV + + DY + IKKPMD T+K
Sbjct: 1 GSSGSSGFLILLRKTLEQLQEKDT---GNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQ 55
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370
++A Y + +F +D LI +NC KYN D A +L++ + +A
Sbjct: 56 NLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQA 111
Score = 119 bits (300), Expect = 3e-32
Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 39/151 (25%)
Query: 75 RNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPI 134
++ + + L+ + + F +PV +
Sbjct: 3 SGSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSE-------------------------- 36
Query: 135 LLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYN 194
VP DY IK PMD T+K+ LE + Y + + DFN + +NC YN
Sbjct: 37 -------VP------DYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83
Query: 195 KPGEDVVVMAQTLEKLFLTKVSARRESGRQI 225
A L + + R ++
Sbjct: 84 AKDTIFYRAAVRLREQGGAVLRQARRQAEKM 114
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 139 bits (352), Expect = 4e-39
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 255 AKPKLTESLKYCNEILKELFSKKHSS--YAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTV 312
+ + + IL + ++K + +WPF+ PV+ + DY+++I PMDL T+
Sbjct: 19 YFQSMDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETI 76
Query: 313 KAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371
+ + +Y+S + F DDV LI N KYN P+ A+++ +V + + + +
Sbjct: 77 RKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLT 135
Score = 126 bits (319), Expect = 1e-34
Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 39/150 (26%)
Query: 85 KNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPV 144
V + +M +WPFH PV+ VP
Sbjct: 36 NIVTQKMMAVPDSWPFHHPVNKKF---------------------------------VP- 61
Query: 145 LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMA 204
DY+KVI +PMDL TI+K + Y S + + D N + N YN P A
Sbjct: 62 -----DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 116
Query: 205 QTLEKLFLTKVSARRESGRQIKKPNRGSDE 234
Q + + ++ E Q++K + E
Sbjct: 117 QEIVNVCYQTLTEYDEHLTQLEKDICTAKE 146
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 138 bits (348), Expect = 3e-38
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKM--DAREY 321
+ C +L L+ + S F PV L + DY++IIK PMDL T+K ++ D Y
Sbjct: 84 RKCERLLLFLYCHEMS---LAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQEDYSMY 137
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAP 367
++F D RLIF NC ++N PD +V KL++ FE +
Sbjct: 138 SKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 183
Score = 116 bits (291), Expect = 3e-30
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 42/161 (26%)
Query: 57 PVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIF 116
+ + T + +L + H+ + F PV L +P
Sbjct: 59 DCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVP---LTVP---- 111
Query: 117 RFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFY--YW 174
DY+K+IK+PMDL TIKKRL+ Y Y
Sbjct: 112 ---------------------------------DYYKIIKNPMDLSTIKKRLQEDYSMYS 138
Query: 175 SGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
++ ++DF +F NC +N+P +V LE F +
Sbjct: 139 KPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELL 179
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 135 bits (342), Expect = 3e-38
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
+ + T + N+++++L K + F PV Y IIK PMD T+K K
Sbjct: 3 EVEQTPLQEALNQLMRQLQRKDP---SAFFSFPVTD--FIAPGYSMIIKHPMDFSTMKEK 57
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
+ +Y+S +E D+ +L+ TN YN P+ AKKL +++ +
Sbjct: 58 IKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLE 111
Score = 121 bits (305), Expect = 5e-33
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 39/135 (28%)
Query: 85 KNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPV 144
+++ + + + F PV P
Sbjct: 14 NQLMRQLQRKDPSAFFSFPVTDFI---------------------------------AP- 39
Query: 145 LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMA 204
Y +IKHPMD T+K++++N Y S +E +F M TN +YNKP A
Sbjct: 40 -----GYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAA 94
Query: 205 QTLEKLFLTKVSARR 219
+ L + +S R
Sbjct: 95 KKLLHSGMKILSQER 109
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 135 bits (342), Expect = 5e-38
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
+ +LT +L +L K A F +PV + DY + IK PMD T++ +
Sbjct: 8 ELRLTPLTVLLRSVLDQLQDKDP---ARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKR 62
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDV 370
++A+ YK+ EF +D LI NC KYN D A +L+D + +A +V
Sbjct: 63 LEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREV 117
Score = 115 bits (291), Expect = 8e-31
Identities = 38/156 (24%), Positives = 50/156 (32%), Gaps = 40/156 (25%)
Query: 77 TNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILL 136
L + ++VL + A F QPV +
Sbjct: 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE---------------------------- 42
Query: 137 AFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKP 196
VP DY IKHPMD T++KRLE Y + E DF+ + NC YN
Sbjct: 43 -----VP------DYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91
Query: 197 GEDVVVMAQTLEKLFLTKVS-ARRESGRQIKKPNRG 231
A L + ARRE + G
Sbjct: 92 DTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASG 127
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 135 bits (341), Expect = 6e-38
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
+ E + + L K F KPVD + DY +IK+PMDL +V +K
Sbjct: 5 EDTFRELRIFLRNVTHRLAIDKR---FRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISK 59
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPP----DHDVVAMAKKLQDVFETKIAKAPD 368
+D +Y + K++ D+ LI +N +YNP D + A L+D I + D
Sbjct: 60 IDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELD 116
Score = 102 bits (255), Expect = 5e-26
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 43/142 (30%)
Query: 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLA 137
+L +NV + + F +PVD +
Sbjct: 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDE----------------------------- 39
Query: 138 FALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPG 197
VP DY VIK PMDL ++ +++ Y + K+ + D + + +N YN
Sbjct: 40 ----VP------DYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89
Query: 198 ED----VVVMAQTLEKLFLTKV 215
+ + A L +
Sbjct: 90 DPGDRLIRHRACALRDTAYAII 111
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 132 bits (333), Expect = 8e-37
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMD 317
L + ++ + + A PFY DY++ IK P+ L ++ K+
Sbjct: 17 NLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYP--DYYQQIKMPISLQQIRTKLK 74
Query: 318 AREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
+EY++ D+ L+F N +YN P+ + KLQ V + K +
Sbjct: 75 NQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126
Score = 106 bits (266), Expect = 2e-27
Identities = 30/150 (20%), Positives = 44/150 (29%), Gaps = 45/150 (30%)
Query: 72 RPGRNTNQLAFISKNVLKPVMK------HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWV 125
T L F S + V A PF+
Sbjct: 10 GVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK------------------ 51
Query: 126 LSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNT 185
+YP DY++ IK P+ L I+ +L+N Y + D N
Sbjct: 52 -----KYP----------------DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNL 90
Query: 186 MFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
MF N YN P + L+++ K
Sbjct: 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKK 120
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 128 bits (323), Expect = 2e-35
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 257 PKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKM 316
PKLT+ + + + + F + L +Y+E+I+KP+D +K ++
Sbjct: 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELP--EYYELIRKPVDFKKIKERI 69
Query: 317 DAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
+Y+S + DV L+ N +N + + LQ VF++ P
Sbjct: 70 RNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122
Score = 105 bits (265), Expect = 2e-27
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 41/157 (26%)
Query: 68 PPPHRPGRNTNQLAFISKNV--LKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWV 125
P + T Q+ I V K Q + F Q
Sbjct: 6 SGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK------------------ 47
Query: 126 LSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNT 185
E P +Y+++I+ P+D IK+R+ N Y S + D
Sbjct: 48 -----ELP----------------EYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVML 86
Query: 186 MFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESG 222
+ N +N G + + L+ +F + + SG
Sbjct: 87 LCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSSG 123
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 127 bits (321), Expect = 3e-35
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 257 PKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKM 316
L E L+ E + + + F K + DY+ IIK+P+DL T+ ++
Sbjct: 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSK--VQYPDYYAIIKEPIDLKTIAQRI 64
Query: 317 DAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
YKS A D+ L+ N YN P V A ++ +F K A+
Sbjct: 65 QNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117
Score = 112 bits (283), Expect = 6e-30
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 41/149 (27%)
Query: 70 PHRPGRNTNQLAFISKNVLKPVMK--HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLS 127
P L + + ++ + F + +
Sbjct: 3 GSSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV-------------------- 42
Query: 128 MYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMF 187
+YP DY+ +IK P+DL TI +R++N Y S D + +
Sbjct: 43 ---QYP----------------DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83
Query: 188 TNCYVYNKPGEDVVVMAQTLEKLFLTKVS 216
N YN+PG V A +++K+F K +
Sbjct: 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKA 112
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 127 bits (322), Expect = 4e-35
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 257 PKLTESLKY-CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
P LT+ +K + ++K S + F + L +Y+E+I+KP+D +K +
Sbjct: 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKER 67
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
+ +Y+S + DV L+ N +N + + LQ VF + K +
Sbjct: 68 IRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121
Score = 104 bits (260), Expect = 1e-26
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 42/150 (28%)
Query: 69 PPHRPGRNTNQLAFISKNVLK---PVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWV 125
P T ++ I V+K Q + F Q
Sbjct: 5 LSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK------------------ 46
Query: 126 LSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNT 185
E P +Y+++I+ P+D IK+R+ N Y S + D
Sbjct: 47 -----ELP----------------EYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85
Query: 186 MFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
+ N +N G + + L+ +F +
Sbjct: 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVR 115
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 126 bits (319), Expect = 7e-35
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 263 LKYCNEILKELFSKKHSS---YAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAR 319
+ C+E+ + K F + DY+E++ +P+DL ++ K+
Sbjct: 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKME 64
Query: 320 EYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
EY D +L+F N Y PD A KL D++ +
Sbjct: 65 EYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114
Score = 97.8 bits (244), Expect = 1e-24
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 46/151 (30%)
Query: 78 NQLAFISKNVLKPVMKHQH------AWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIE 131
+ +A + + ++ F +
Sbjct: 5 DPIAVC-HELYNTIRDYKDEQGRLLCELFIRAPKRR-----------------------N 40
Query: 132 YPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCY 191
P DY++V+ P+DL I+++L+ Y +DF +F N
Sbjct: 41 QP----------------DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAK 84
Query: 192 VYNKPGEDVVVMAQTLEKLFLTKVSARRESG 222
Y KP A L L+L + + G
Sbjct: 85 SYYKPDSPEYKAACKLWDLYLRTRNEFVQKG 115
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 125 bits (315), Expect = 5e-34
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Query: 256 KPKLTESLKYCNEILKELFSKKHS-SYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
K + +K ++ E F DY++II +PMDL ++
Sbjct: 22 KNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSK--KDYPDYYKIILEPMDLKIIEH 79
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAK---APDDVP 371
+ +Y + +D++L+F N YN V A L+ + + K + PDD
Sbjct: 80 NIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDD 139
Query: 372 IVSSS 376
+ S +
Sbjct: 140 MASPA 144
Score = 112 bits (281), Expect = 3e-29
Identities = 30/156 (19%), Positives = 44/156 (28%), Gaps = 42/156 (26%)
Query: 63 QPPTVPPPHRPGRNTNQLAFISK---NVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFL 119
+ + ++ + +P + F
Sbjct: 12 DTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK------------ 59
Query: 120 VFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEA 179
+YP DY+K+I PMDL I+ + N Y +
Sbjct: 60 -----------DYP----------------DYYKIILEPMDLKIIEHNIRNDKYAGEEGM 92
Query: 180 ISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
I D MF N YN+ G V A LEKL K
Sbjct: 93 IEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKR 128
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 120 bits (303), Expect = 1e-32
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 244 SVTSVGDQGSYAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEII 303
S++ + + S + + L E +K K+ + F + + L DY+ I
Sbjct: 1 SMSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELP--DYYLTI 58
Query: 304 KKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKI 363
KKPMD+ +++ M A +Y+ +D ++F N YN P+ + A L V
Sbjct: 59 KKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETR 118
Query: 364 AKAPDD 369
D
Sbjct: 119 RDLEGD 124
Score = 111 bits (279), Expect = 2e-29
Identities = 27/157 (17%), Positives = 43/157 (27%), Gaps = 47/157 (29%)
Query: 65 PTVPPPHRPGRNTNQLAFISKNVLKPVMK------HQHAWPFHQPVDAIDLNLPFLIFRF 118
+ P + + + V + V + + F +
Sbjct: 3 SGISP--KKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS----------- 49
Query: 119 LVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKE 178
E P DY+ IK PMD+ I+ + Y
Sbjct: 50 ------------ELP----------------DYYLTIKKPMDMEKIRSHMMANKYQDIDS 81
Query: 179 AISDFNTMFTNCYVYNKPGEDVVVMAQTLEKLFLTKV 215
+ DF MF N YN+P + A L K+ L
Sbjct: 82 MVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETR 118
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 119 bits (300), Expect = 3e-32
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Query: 256 KPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAK 315
+L + K + + + A P DY+E I P+DL T++ +
Sbjct: 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQ 64
Query: 316 MDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSS 375
+ YK+ + F D+ +F N KY V +L+ + +A + +
Sbjct: 65 ILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEIVG 124
Query: 376 SS 377
+
Sbjct: 125 ET 126
Score = 103 bits (259), Expect = 1e-26
Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 41/149 (27%)
Query: 70 PHRPGRNTNQLAFISKNV--LKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLS 127
R R I + K + A P
Sbjct: 4 VARAARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK-------------------- 43
Query: 128 MYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMF 187
+ DY++ I P+DL TI+K++ YY + + +D +F
Sbjct: 44 ---KNA----------------DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84
Query: 188 TNCYVYNKPGEDVVVMAQTLEKLFLTKVS 216
N Y V L K +
Sbjct: 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARH 113
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 90
Score = 109 bits (274), Expect = 4e-29
Identities = 63/88 (71%), Positives = 75/88 (85%)
Query: 477 PAPVMNDESDEESSKPMSYFEKQELSLDINKLPGKKLGRVVHIIQSREPSLRDSNPDEIE 536
+ + +E+ KPMSY EK++LSLDINKLPG+KLGRVVHIIQSREPSL++SNPDEIE
Sbjct: 2 SSGSSGESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIE 61
Query: 537 IDFETLKPSTLRELEKYVATCLRKKPRK 564
IDFETLKPSTLRELE+YV +CLRKK +
Sbjct: 62 IDFETLKPSTLRELERYVTSCLRKKRKP 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 107 bits (267), Expect = 7e-27
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 23/136 (16%)
Query: 254 YAKPKLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVK 313
K S + + L + F +PV + +Y++IIKKPMDL TVK
Sbjct: 71 KGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVP---ASIPNYYKIIKKPMDLSTVK 127
Query: 314 AKMDAR---EYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMA-----------------K 353
K+ + Y+ +F DVRLIF NC ++N V A K
Sbjct: 128 KKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGK 187
Query: 354 KLQDVFETKIAKAPDD 369
+ FE K+ + D
Sbjct: 188 AVALYFEDKLTEIYSD 203
Score = 85.3 bits (210), Expect = 3e-19
Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 43/184 (23%)
Query: 34 MDEKDFALSNGGEPPAREEPRLEPVNGIVQPPTVPPPHRPGRNTNQLAFISKNVLKPVMK 93
F + R+ + E + + +L +
Sbjct: 36 PTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYC 95
Query: 94 HQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQDYHK 153
H+ + F +PV A + +Y+K
Sbjct: 96 HELSIEFQEPVPAS----------------------------------------IPNYYK 115
Query: 154 VIKHPMDLGTIKKRLE---NFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKL 210
+IK PMDL T+KK+L+ + +Y + ++D +F NC +N+ + V V A T E
Sbjct: 116 IIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEIN 175
Query: 211 FLTK 214
Sbjct: 176 LKAD 179
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 96.1 bits (239), Expect = 1e-23
Identities = 17/144 (11%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 264 KYCNEILKELFSKKHSS---YAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDARE 320
+ + + + S + Y+ + D + K P+ ++ ++
Sbjct: 10 ELIHNLFVSVMSHQDDEGRCYSDSLAEIPA------VDPNFPNKPPLTFDIIRKNVENNR 63
Query: 321 YKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVP 380
Y+ F + + + + N D ++ A +LQ F + + I+ S ++
Sbjct: 64 YRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSY 123
Query: 381 TLTVNKNNIGRWSPDSSSDSTDSE 404
T N++ + + + +
Sbjct: 124 TTKHLHNDVEKERKEKLPKEIEED 147
Score = 76.1 bits (187), Expect = 1e-16
Identities = 14/92 (15%), Positives = 29/92 (31%)
Query: 150 DYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEK 209
D + K P+ I+K +EN Y + N+ ++ A L++
Sbjct: 41 DPNFPNKPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQ 100
Query: 210 LFLTKVSARRESGRQIKKPNRGSDEGSFTTQL 241
F+ ++G + P +
Sbjct: 101 FFIKIRDELCKNGEILLSPALSYTTKHLHNDV 132
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 92.6 bits (229), Expect = 6e-22
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 266 CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAR---EYK 322
C +L LF + P ++ + + +DL ++A++ + Y
Sbjct: 81 CERVLLALFCHEPC---RPLHQLATDST----FSLDQPGGTLDLTLIRARLQEKLSPPYS 133
Query: 323 SSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
S +EFA DV +F K V LQ FET++ +A D
Sbjct: 134 SPQEFAQDVGRMFKQFNKLTEDK-ADVQSIIGLQRFFETRMNEAFGD 179
Score = 65.7 bits (159), Expect = 1e-12
Identities = 18/129 (13%), Positives = 32/129 (24%), Gaps = 7/129 (5%)
Query: 90 PVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQ 149
+ + L VL +
Sbjct: 49 LPDLKEEDGSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQLATDS---T 105
Query: 150 DYHKVIKHPMDLGTIKKRLE---NFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQT 206
+DL I+ RL+ + Y S +E D MF + + V
Sbjct: 106 FSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTED-KADVQSIIG 164
Query: 207 LEKLFLTKV 215
L++ F T++
Sbjct: 165 LQRFFETRM 173
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 76.2 bits (186), Expect = 3e-16
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 299 YHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDV 358
++P+DL VK KMD Y S EF+DD+ I + ++ ++
Sbjct: 97 LRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSF 156
Query: 359 FETKIAK 365
F ++ +
Sbjct: 157 FIRQMER 163
Score = 61.1 bits (147), Expect = 4e-11
Identities = 9/65 (13%), Positives = 25/65 (38%)
Query: 151 YHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMAQTLEKL 210
+ P+DL +K++++ Y S E D + + ++ ++
Sbjct: 97 LRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSF 156
Query: 211 FLTKV 215
F+ ++
Sbjct: 157 FIRQM 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 3e-08
Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 218/547 (39%)
Query: 104 VDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPVLIILQD-YHKVIKHPMD-- 160
+DA R L H L + P F + LQ+ ++K++ P +
Sbjct: 1 MDAYST-------RPLTLSHGSLEHVLLVPTASFFIASQ-----LQEQFNKILPEPTEGF 48
Query: 161 ----------------LGTIKKRLENFYYWSGKEAISDFNTM-------FTNCYVYNKPG 197
LG + +E + F+ + F NCY+ G
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTEFENCYLE---G 98
Query: 198 EDVVVMAQTLE-----------KLFLTKVSARRESGRQIKKPN-----RGSDEGSFTTQL 241
D+ +A L +L ++AR + R K + R EG+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN----- 153
Query: 242 ATSVTSV-GDQGS-----------YA--KPKLTESLKYCNEILKELFSKKHSSYAWPFYK 287
+ ++ G QG+ Y + + +K+ E L EL + F +
Sbjct: 154 -AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQ 211
Query: 288 PVD-AAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRLI----------FT 336
++ WL P ++Y S + LI
Sbjct: 212 GLNILEWL-----ENPSNTP-----------DKDYLLSIPIS--CPLIGVIQLAHYVVTA 253
Query: 337 NCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDS 396
+ P + + L+ T ++ +V++ ++ +
Sbjct: 254 KLLGFTPGE-----LRSYLKGA--TGHSQG-----LVTAVAI-----------------A 284
Query: 397 SSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKT 456
+DS +S RK I++ + P T+ P S ++
Sbjct: 285 ETDSWES-FFVSVRKAITVLFFI----GVRCYEAYPNTSL-----PPSILED-------- 326
Query: 457 PVKRKAPPMPNKSVSAQHTQPAPVM---NDESDEESSKPMSYFEKQELSLDINK-LPGKK 512
S+ P+P M ++ + E+ ++ N LP
Sbjct: 327 ------------SLENNEGVPSP-MLSISNLTQEQVQDYVNKT---------NSHLPA-- 362
Query: 513 LGRVVHIIQSREPSLRDSNPDEIEIDFETLKPSTLRELEKYVATCLRKK----------- 561
G+ V I SL + + + + P +L L LRK
Sbjct: 363 -GKQVEI------SLVNG-AKNLVV---SGPPQSLYGLNLT----LRKAKAPSGLDQSRI 407
Query: 562 P---RKP 565
P RK
Sbjct: 408 PFSERKL 414
Score = 42.3 bits (99), Expect = 4e-04
Identities = 59/405 (14%), Positives = 107/405 (26%), Gaps = 145/405 (35%)
Query: 81 AFISK--NVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYP----- 133
I L +++ +++ W +E P
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFT-QGLNI------------LEW-----LENPSNTPD 227
Query: 134 --ILLAFALTVPVLIILQDYHKVI------KHPMDLGTIKKRLENFYYWSGKEAISDFNT 185
LL+ ++ P++ ++Q H V+ P G ++ L G
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP---GELRSYL------KG--------- 269
Query: 186 MFTNCYVYNKPGEDVVVMA----------------QTLEKLFLTKVSARRESGRQIKKPN 229
T + +V + + LF V P+
Sbjct: 270 -ATGH------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 230 RGSD-----EGSFTTQLATSVTSVGDQGSYAKPKLTESLKYCNEILKE-------LF-SK 276
D EG + L S++++ + ++ + + N L L
Sbjct: 323 ILEDSLENNEGVPSPML--SISNL------TQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 277 KHSSYAWPFYKPVDAAWL-GLNDYHEIIKKPMDLGTVKAKMDAREYKSSKEFADDVRL-I 334
K+ + P P L GLN K P L + R+ K S F L +
Sbjct: 375 KNLVVSGP---PQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-----LPV 423
Query: 335 FTNCYKYNPPDHD---VVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGR 391
+ P H V A +D+ ++V + +P V
Sbjct: 424 AS-------PFHSHLLVPASDLINKDL-------VKNNVSFNAKDIQIP---V------- 459
Query: 392 WSPDSSSD--STDSEADERARKLISLQDQVTPKPA--TAAQRKKP 432
+ SD ER + D + P + K
Sbjct: 460 YDTFDGSDLRVLSGSISER------IVDCIIRLPVKWETTTQFKA 498
Score = 33.5 bits (76), Expect = 0.25
Identities = 45/273 (16%), Positives = 79/273 (28%), Gaps = 107/273 (39%)
Query: 11 LYRT--LVK-IWKVAKAGTRSIDPKSMDEKDFALSNGGEPPAREEPRLEPVNGIVQ--PP 65
LY+T + +W A D D F++ + IV P
Sbjct: 1635 LYKTSKAAQDVWNRA-------DNHFKDTYGFSILD-----------------IVINNPV 1670
Query: 66 --TVPPPHRPGR----NTNQLAF--------ISKNVLKPVMKHQHAWPFHQPVDAIDLNL 111
T+ G+ N + + F ++ + K + +H ++ F L+
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--LLSA 1728
Query: 112 -----P--FL----IFRFL----VFQ-------HWVLSMYI-EYPILLAFA--LTVPVLI 146
P L F L + H S + EY L + A +++ L+
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH---S--LGEYAALASLADVMSIESLV 1783
Query: 147 IL-------------QDYHKVIKHPM---DLGTIKKRLENFYYWSGKEAISDFNTMF--- 187
+ +D + M + G + +EA+
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF-------SQEALQYVVERVGKR 1836
Query: 188 TNCYV----YNKPGEDVVVMAQTLEKL-FLTKV 215
T V YN + V A L L +T V
Sbjct: 1837 TGWLVEIVNYNVENQQYVA-AGDLRALDTVTNV 1868
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 1e-07
Identities = 57/452 (12%), Positives = 114/452 (25%), Gaps = 164/452 (36%)
Query: 19 WKVAKAGTRSIDPKSMDEKDFA-----LSNGGEP-PAREEPRLEPVNGIVQPPTVPPPH- 71
+ ++ T P SM + + L N + RL+P + Q
Sbjct: 93 FLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-------AL 144
Query: 72 ---RPGRNTNQLAFIS--------KNVL-KPVMKHQHAWPFHQPVDAIDLNLPFLIFRFL 119
RP +N + K + V + + F IF
Sbjct: 145 LELRPAKN------VLIDGVLGSGKTWVALDVCLS----------YKVQCKMDFKIF--- 185
Query: 120 VFQHWVLSMYIEYPILLAFALTVPVLIILQD-YHKVIKHPMDLG----TIKKRLENFYYW 174
W+ P + L +LQ +++ + IK R+
Sbjct: 186 ----WLNLKNCNSPETV--------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIH----- 228
Query: 175 SGKEAISDF--NTMFTNCY-----VYNKPGEDVV----VMAQTLEKLFLTKVSARRESGR 223
S + + + + NC V N + + L
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNAFNLSCKIL---------------- 269
Query: 224 QIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKLTESLK-YCNEILKELFSKKHSSYA 282
TT+ VT + L + +K L K
Sbjct: 270 -------------LTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK------ 309
Query: 283 WPFYKPVDAAWLGLNDY---HEIIK-KPMDLGTVKAKMDAREYKSSKEF-----ADDVRL 333
+L E++ P L + + R+ ++ + D +
Sbjct: 310 ----------YLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTT 357
Query: 334 IFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNIGRWS 393
I + P + + +F+ +++ P I L++ W
Sbjct: 358 IIESSLNVLEPA--------EYRKMFD-RLSVFPPSAHI-----PTILLSL------IWF 397
Query: 394 PDSSSDSTDSEADERARKLISLQDQVTPKPAT 425
D ++ + + + PK +T
Sbjct: 398 -DVIKSDVMVVVNKLHKYSLVEKQ---PKEST 425
Score = 37.5 bits (86), Expect = 0.014
Identities = 63/441 (14%), Positives = 126/441 (28%), Gaps = 118/441 (26%)
Query: 157 HPMDLGTIKKRLENFYYWSGKEAISDFNTMFT---NCY---------VYNKPGEDVVVMA 204
H MD T + + + K+ +S F F +C + + + +++
Sbjct: 5 HHMDFETGEHQYQY------KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 205 QTLEKLFLTKVSARRESGRQIKKPNRGSDEGSFTTQLATSVTSVGDQGSYAKPKL-TESL 263
+ + + ++K ++ L + + + +P + T
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPI-----KTEQRQPSMMTRMY 112
Query: 264 KYCNEILK---ELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLG---TVKAKMD 317
+ L ++F+K + S P+ K + A L L ++ + LG T A
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGV-LGSGKTWVALDV 170
Query: 318 AREYKSSKEFADDVR-LIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSS 376
YK + + L NC V+ M +KL + D +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNS----PETVLEMLQKLLYQIDPNWTSRSD--HSSNIK 224
Query: 377 SMVPTLTVNKNNIGRWSP--------DSSSDSTDSEA-DERARKLISLQDQVTPKPATAA 427
+ ++ + + P + ++ A + + L+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-------------- 270
Query: 428 QRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSV----SAQHTQPAPVMND 483
TT R K V SA T + +
Sbjct: 271 ------TT------------------------R------FKQVTDFLSAATTTHISLDHH 294
Query: 484 ESDEESSKPMSYFEKQELSLDINKLPGKKLG---RVVHII---QSREPS----LRDSNPD 533
+ S K L LP + L R + II + + N D
Sbjct: 295 SMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 534 E----IEIDFETLKPSTLREL 550
+ IE L+P+ R++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM 374
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 35.9 bits (81), Expect = 0.041
Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 4/127 (3%)
Query: 421 PKPATAAQRKKPPTTPLSAPQPA-SSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P A + P L AP A S +K ARPPA + PP + + +P
Sbjct: 21 APPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSP 80
Query: 480 VMNDESDEESSKPMSYFEKQELSLDINKLPGKKLGRVVHIIQSREPSLRDSNPDEIEIDF 539
+ D + ++ L E + E+
Sbjct: 81 STPEAPDIPACPSP---GQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARV 137
Query: 540 ETLKPST 546
LK S
Sbjct: 138 RALKASA 144
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 34.7 bits (79), Expect = 0.050
Identities = 15/74 (20%), Positives = 24/74 (32%)
Query: 419 VTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPA 478
VTP Q +PP P+ P+P A +++ P K + Q
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99
Query: 479 PVMNDESDEESSKP 492
P + + E
Sbjct: 100 PKRDVKPVESRPAS 113
Score = 34.3 bits (78), Expect = 0.070
Identities = 13/75 (17%), Positives = 24/75 (32%)
Query: 418 QVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQP 477
Q P+P + + P P K +P K +K P + V ++P
Sbjct: 52 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 111
Query: 478 APVMNDESDEESSKP 492
A + + +
Sbjct: 112 ASPFENTAPARLTSS 126
Score = 32.4 bits (73), Expect = 0.33
Identities = 13/80 (16%), Positives = 24/80 (30%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHT 475
+ P +KP P P+P V++ + K R A P N + + +
Sbjct: 66 EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 125
Query: 476 QPAPVMNDESDEESSKPMSY 495
A + +
Sbjct: 126 STATAATSKPVTSVASGPRA 145
Score = 28.9 bits (64), Expect = 3.5
Identities = 14/72 (19%), Positives = 21/72 (29%)
Query: 409 ARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNK 468
++I L P T P P V+ P ++AP + K
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Query: 469 SVSAQHTQPAPV 480
+P PV
Sbjct: 82 PKPKPKPKPKPV 93
Score = 28.5 bits (63), Expect = 5.7
Identities = 9/64 (14%), Positives = 17/64 (26%)
Query: 416 QDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHT 475
+ + P P + P P+P K + K VK + +
Sbjct: 62 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121
Query: 476 QPAP 479
+
Sbjct: 122 RLTS 125
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 35.1 bits (80), Expect = 0.051
Identities = 13/87 (14%), Positives = 16/87 (18%), Gaps = 2/87 (2%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARP 452
S S+ VT + PP T P P
Sbjct: 4 SHHHHHHSSGLVPRGSHMV--IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 453 PAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P + T AP
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAP 88
Score = 29.3 bits (65), Expect = 3.8
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 9/117 (7%)
Query: 363 IAKAPDDVPIVSSSSMVPTLTVNKNNIGRWSPDSSSDSTDSEADERARKLISLQDQVTPK 422
+ + SS +VP + P +S S S+ +++ D P
Sbjct: 1 MGSSHHHHH--HSSGLVPRGSHMV------IPSASVTSAASDFLAALHPPVTVPDPAPPP 52
Query: 423 PATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
P A P T + ++ P P + + PA
Sbjct: 53 PPAPAAGNPPDTVTGDS-VLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 34.6 bits (79), Expect = 0.064
Identities = 12/78 (15%), Positives = 19/78 (24%)
Query: 406 DERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPM 465
+L L + Q++K P K K K
Sbjct: 35 RRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKR 94
Query: 466 PNKSVSAQHTQPAPVMND 483
+ ++ PVM D
Sbjct: 95 MRNCMKIENDCIFPVMLD 112
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 34.4 bits (78), Expect = 0.12
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 11/139 (7%)
Query: 422 KPATAAQRKKPPTTPLS--APQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAP 479
+ A+ + +K T LS A A + K K+K K
Sbjct: 800 EEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKE 859
Query: 480 VMNDESDEESSKPMSYFEKQE-----LSLDINKLPGKKLGRVVHIIQSREPS----LRDS 530
++ + +K S K + L + K R V + + + + LRD
Sbjct: 860 TKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRDR 919
Query: 531 NPDEIEIDFETLKPSTLRE 549
P E ET++
Sbjct: 920 EPKEPVALIETVRQMKDVN 938
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.19
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 23/40 (57%)
Query: 497 EKQELSLDINKLPGKKLGRVVHIIQSREPSLR----DSNP 532
EKQ L KKL + SL+ DS P
Sbjct: 18 EKQAL---------KKL----------QASLKLYADDSAP 38
Score = 28.8 bits (63), Expect = 2.6
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 353 KKLQDVFETKIAK-APDDVPIVSSSSMV 379
KKL + + A D P ++ + +
Sbjct: 23 KKL----QASLKLYADDSAPALAIKATM 46
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding
site, glycosylation, ultrahigh resolution, calcium; HET:
NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB:
1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A*
1mn2_A*
Length = 357
Score = 30.3 bits (68), Expect = 1.7
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 420 TPKPATAAQRKKP-PTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQ-P 477
PKPAT P T P S + P + P+ S+S Q
Sbjct: 295 VPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFN 354
Query: 478 AP 479
P
Sbjct: 355 GP 356
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 30.3 bits (68), Expect = 2.0
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 393 SPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQR---KKPPTTPLSAPQPASSVKKP 449
SSD+ S + ++++++ ++ + A + P P P +
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQG 414
Query: 450 ARPPAKTPVKRKAPP 464
P P + APP
Sbjct: 415 YPPQGYPPPPQGAPP 429
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 29.8 bits (66), Expect = 2.6
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 415 LQDQVTPKPATAAQRKKPPTTPLSAPQPASSVK-KPARPPAKTPVKRKAPP--MPNKSVS 471
+D Q P + P S PA++ + P P + P P P + +
Sbjct: 302 AKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEA 361
Query: 472 AQHTQPAPVMNDESDEESSK 491
A +PAPV + +
Sbjct: 362 AGSVEPAPVEEVAPAPAAQR 381
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 29.4 bits (65), Expect = 3.0
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 1/96 (1%)
Query: 391 RWSPDSSSDSTDSEADERARKLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPA 450
P + ++ + A + + P+ + P K
Sbjct: 30 APMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQE 89
Query: 451 RPPAKTPVKRKAPPMPNKSVSAQHTQPAPVMNDESD 486
+ + P K K ++ + + V N++ D
Sbjct: 90 KKKKQ-PAKTKPGKRQRMALKLEADRLFDVKNEDGD 124
>1smv_A Sesbania mosaic virus coat protein; coat protein (viral),
icosahedral virus; 3.00A {Sesbania mosaic virus} SCOP:
b.121.4.7 PDB: 1x33_A 1x35_A 2vq0_A
Length = 266
Score = 29.2 bits (64), Expect = 3.5
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 411 KLISLQDQVTPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMP---N 467
K I+ + P+P +R + P P A+ + R P
Sbjct: 11 KAIANTLETPPQPKAGRRRNRRRQRSAVQQLPPIQAGISMAPSAQGAMVRIRNPAVSSSR 70
Query: 468 KSVSAQHTQ 476
+++ H +
Sbjct: 71 GAITVLHCE 79
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 29.0 bits (65), Expect = 4.6
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 106 AIDLNLPFLIFRFLVFQHWVLSMYIEYP------------ILLAFALTVPVLIILQDYHK 153
A + +P I + + +E P + F+ VPVL+I Y
Sbjct: 252 ASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSL 311
Query: 154 VIKH 157
+I+
Sbjct: 312 MIRR 315
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 28.8 bits (64), Expect = 5.6
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 5/78 (6%)
Query: 422 KPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQHTQPAPVM 481
P + T + PA+ PA P P T P P
Sbjct: 4 APTSPGTPGVAAATQAANGGPAT----PAPPALGAAPTGDPKP-KKNKKPKNPTPPRPAG 58
Query: 482 NDESDEESSKPMSYFEKQ 499
++ + + +
Sbjct: 59 DNATVAAGHATLREHLRD 76
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 28.3 bits (61), Expect = 7.7
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAPPMPNKSVSAQH 474
P ++ PP P + +P +KP +P P K P P + H
Sbjct: 441 VNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHHH 495
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 28.4 bits (62), Expect = 8.7
Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 7/158 (4%)
Query: 351 MAKKLQDVFETKIAKAPDDVPIVSSSSMVPTLTVNKNNI---GRWSPDSSSDSTDSEADE 407
MA+ + +F + P + + +P+ + I + + S S+ +
Sbjct: 420 MAEYCRTIFGDMLLTEPLEKFPLKPGVPLPSPEDLRGKILIKNKKNQFSGPTSSSKDTGG 479
Query: 408 RARKLISLQDQVTPKP----ATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRKAP 463
A + + S +KK ++ A
Sbjct: 480 EAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEVTAY 539
Query: 464 PMPNKSVSAQHTQPAPVMNDESDEESSKPMSYFEKQEL 501
+ V+ + + S +S F + +
Sbjct: 540 EEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKA 577
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 28.0 bits (63), Expect = 8.8
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 420 TPKPATAAQRKKPPTTPLSAPQPASSVKKPARPPAKTPVKRK 461
K T ++ +K +AP + R A P RK
Sbjct: 97 EEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIA-MPSVRK 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,542,306
Number of extensions: 517294
Number of successful extensions: 1173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 177
Length of query: 566
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 467
Effective length of database: 3,937,614
Effective search space: 1838865738
Effective search space used: 1838865738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.1 bits)