RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy245
(566 letters)
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 112 bits (282), Expect = 2e-30
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKS 323
+ L+ L+ + + PF +PVD LG+ DY +I+K PMDL T+K K+D +Y+
Sbjct: 9 QALMPTLEALY--RQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE 66
Query: 324 SKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAK 365
++ DDV L+F N + YN V KL +VFE +I
Sbjct: 67 PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDP 108
Score = 86.9 bits (215), Expect = 3e-21
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 38/138 (27%)
Query: 85 KNVLKPVMKHQ-HAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVP 143
L+ + + + PF QPVD L +P
Sbjct: 12 MPTLEALYRQDPESLPFRQPVDPQLLGIP------------------------------- 40
Query: 144 VLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVM 203
DY ++K+PMDL TIK++L+ Y + + D MF N ++YN+ V
Sbjct: 41 ------DYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKF 94
Query: 204 AQTLEKLFLTKVSARRES 221
L ++F ++ +S
Sbjct: 95 CSKLAEVFEQEIDPVMQS 112
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 112 bits (281), Expect = 7e-30
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 255 AKPKLTESLKYCNEILKELFSK-KHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVK 313
+ T+ + + IL+ + + + +PF+ PV+A + DY++II +PMDL T++
Sbjct: 16 IHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLR 73
Query: 314 AKMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371
+ R Y S +EF + + LI N YN P H + +++ + D+ + K+ + D +
Sbjct: 74 ENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLA 131
Score = 95.4 bits (237), Expect = 5e-24
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 39/163 (23%)
Query: 65 PTVPPPHRPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHW 124
P R L+ I ++++ + + +PFH PV+A
Sbjct: 12 PHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAK----------------- 54
Query: 125 VLSMYIEYPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFN 184
DY+K+I PMDL T+++ + Y S +E
Sbjct: 55 ------VVK----------------DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLE 92
Query: 185 TMFTNCYVYNKPGEDVVVMAQTLEKLFLTKVSARRESGRQIKK 227
+ N YN P + ++Q++ L K+ + + +++K
Sbjct: 93 LIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEK 135
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 111 bits (278), Expect = 7e-30
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 264 KYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREYKS 323
IL EL + AWPF +PV+ + DY++ IK+PMDL T++ K+++ +Y+
Sbjct: 6 AAIQNILTELQNHAA---AWPFLQPVN--KEEVPDYYDFIKEPMDLSTMEIKLESNKYQK 60
Query: 324 SKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDD 369
++F D RL+F NC YN + A +L+ F K+ + P+
Sbjct: 61 MEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEY 106
Score = 86.9 bits (215), Expect = 3e-21
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 39/136 (28%)
Query: 85 KNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAFALTVPV 144
+N+L + H AWPF QPV+ E P
Sbjct: 9 QNILTELQNHAAAWPFLQPVNKE-----------------------EVP----------- 34
Query: 145 LIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVVMA 204
DY+ IK PMDL T++ +LE+ Y ++ I D +F NC +YN A
Sbjct: 35 -----DYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYA 89
Query: 205 QTLEKLFLTKVSARRE 220
LEK F KV E
Sbjct: 90 NRLEKFFNNKVKEIPE 105
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 110 bits (277), Expect = 2e-29
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 264 KYCNEILKELFSKKHSSY--AWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMDAREY 321
+ IL + ++K + +WPF+ PV+ + DY+++I PMDL T++ + +Y
Sbjct: 8 VAFSFILDNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKY 65
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVP 371
+S + F DDV LI N KYN P+ A+++ +V + + + +
Sbjct: 66 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLT 115
Score = 93.1 bits (231), Expect = 3e-23
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 40/149 (26%)
Query: 80 LAFISKN-VLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLAF 138
+FI N V + +M +WPFH PV+ P
Sbjct: 10 FSFILDNIVTQKMMAVPDSWPFHHPVNKK-----------------------FVP----- 41
Query: 139 ALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGE 198
DY+KVI +PMDL TI+K + Y S + + D N + N YN P
Sbjct: 42 -----------DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 90
Query: 199 DVVVMAQTLEKLFLTKVSARRESGRQIKK 227
AQ + + ++ E Q++K
Sbjct: 91 QYTKTAQEIVNVCYQTLTEYDEHLTQLEK 119
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 107 bits (268), Expect = 1e-28
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 258 KLTESLKYCNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKAKMD 317
+L +LK +L ++ S + WPF +PV DY+E+I+ P+DL T+ ++
Sbjct: 2 QLYTTLK---NLLAQIKSHPSA---WPFMEPVKK--SEAPDYYEVIRFPIDLKTMTERLR 53
Query: 318 AREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAK 365
+R Y + K F D++ + NC +YNPPD + A L+ F K+ +
Sbjct: 54 SRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101
Score = 92.0 bits (228), Expect = 4e-23
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 39/138 (28%)
Query: 78 NQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIEYPILLA 137
+QL KN+L + H AWPF +PV E P
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKS-----------------------EAP---- 33
Query: 138 FALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPG 197
DY++VI+ P+DL T+ +RL + YY + K ++D + NC YN P
Sbjct: 34 ------------DYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 81
Query: 198 EDVVVMAQTLEKLFLTKV 215
+ A LEK F K+
Sbjct: 82 SEYCRCASALEKFFYFKL 99
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 103 bits (259), Expect = 4e-27
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 256 KPKLTESLKY-CNEILKELFSKKHSSYAWPFYKPVDAAWLGLNDYHEIIKKPMDLGTVKA 314
+P+ + L IL+++ S + + WPF +PV Y+E+I+ PMDL T+
Sbjct: 7 EPRDPDQLYSTLKSILQQVKSHQSA---WPFMEPVKR--TEAPGYYEVIRFPMDLKTMSE 61
Query: 315 KMDAREYKSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKA 366
++ R Y S K F D++ +FTNC +YNPP+ + A L+ F +KI +A
Sbjct: 62 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113
Score = 91.6 bits (227), Expect = 8e-23
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 39/144 (27%)
Query: 72 RPGRNTNQLAFISKNVLKPVMKHQHAWPFHQPVDAIDLNLPFLIFRFLVFQHWVLSMYIE 131
+ R+ +QL K++L+ V HQ AWPF +PV E
Sbjct: 6 KEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRT-----------------------E 42
Query: 132 YPILLAFALTVPVLIILQDYHKVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCY 191
P Y++VI+ PMDL T+ +RL+N YY S K ++D +FTNC
Sbjct: 43 AP----------------GYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCK 86
Query: 192 VYNKPGEDVVVMAQTLEKLFLTKV 215
YN P + A LEK F +K+
Sbjct: 87 EYNPPESEYYKCANILEKFFFSKI 110
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 28.7 bits (64), Expect = 1.4
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 322 KSSKEFADDVRLIFTNCYKYNPPDHDVVAMAKKLQDVFETKIAKAPDDVPIVSSSSMVPT 381
+ F D+ +++ + ++++ I + D + +V P
Sbjct: 14 PRIRSFVKDLSATIPGAFRFTRGHY-------SMEELAREAIIRGADRIVVVGERRGNPG 66
Query: 382 LTV 384
+
Sbjct: 67 IIR 69
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 27.7 bits (60), Expect = 3.2
Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 153 KVIKHPMDLGTIKKRLENFYYWSGKEAISDFNTMFTNCYVYNKPGEDVVV 202
K +K D+ +I + + Y + I + + +N + + ++
Sbjct: 1 KSVKISDDI-SITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALL 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,098,747
Number of extensions: 100229
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 23
Length of query: 566
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,171,896
Effective search space: 557822496
Effective search space used: 557822496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.3 bits)