RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2450
         (254 letters)



>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
           Saccharomyces cerevisiae sequence}
          Length = 31

 Score = 30.9 bits (70), Expect = 0.010
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 88  CLICKRQFNSKDILKKHTQLSELHKSNL 115
           C +C R F  +D+L +H Q  ++H  NL
Sbjct: 4   CGLCNRAFTRRDLLIRHAQ--KIHSGNL 29


>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 29.7 bits (67), Expect = 0.062
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 76  EEKQQIDWDK-----LACLICKRQFNSKDILKKHTQLSELHKSNLKM 117
           +   + D D        CL C R F     LK H + S+ HK  LK 
Sbjct: 1   DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFR-SKDHKKRLKQ 46


>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
          thermophilus [TaxId: 274]}
          Length = 98

 Score = 26.2 bits (58), Expect = 1.9
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 14 ISKVANNTEQAASESPSQSTQGSADVCFSVVGNNRE--EKTKKSLVAAYESDEEPEVQEE 71
          + ++      +A+        G   V F+++GN+    E+T ++           +V  E
Sbjct: 30 LERLKARFPVSAARLYGLDAWGYEVVGFTLLGNDPAWVEETMRAAARFLAEAGGFQVALE 89

Query: 72 TVSGEE 77
              E 
Sbjct: 90 EFRLEA 95


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 24.2 bits (53), Expect = 2.6
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 88  CLICKRQFNSKDILKKHTQ 106
           C IC  +F     +K H  
Sbjct: 11  CYICHARFTQSGTMKMHIL 29


>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 174

 Score = 25.9 bits (56), Expect = 3.9
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 90  ICKRQFNSKDILKKHTQLSELHKSNLKMWYTCRNLDPNDAVHRAVQYRDRAKERRLKYGE 149
           +   +     +LK       L K  + +++   + +    + R ++ RDRA         
Sbjct: 67  LPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYY 126

Query: 150 PEVPPACKLKAKYSKVKEATVTFEEP 175
           PE+     LK  Y +       F EP
Sbjct: 127 PEM---YILKGGYKEFFPQHPNFCEP 149


>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus
           subtilis [TaxId: 1423]}
          Length = 311

 Score = 26.1 bits (56), Expect = 4.6
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 207 GRTSIIEAEARISSAGLGTNAIGMTPAPGETYKDCVKKMMRA 248
           G++ +     ++   GLGTNA+G         ++  K+++R 
Sbjct: 6   GKSDL-----QVFPIGLGTNAVGGHNLYPNLNEETGKELVRE 42


>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 28

 Score = 23.2 bits (50), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 87  ACLICKRQFNSKDILKKHTQL 107
           AC IC R+F   D  K+HT++
Sbjct: 5   ACDICGRKFARSDERKRHTKI 25


>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 121

 Score = 24.8 bits (54), Expect = 7.6
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 75  GEEKQQIDWDKLACLICKRQFNSKDILKKHTQLSELHKSNL 115
              +Q        CL C R F S +    H      H+ N+
Sbjct: 10  AHGRQHT-----PCLFCDRLFASAEETFSH--CKLEHQFNI 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.125    0.359 

Gapped
Lambda     K      H
   0.267   0.0739    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,903
Number of extensions: 38102
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 8
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (23.8 bits)