BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2452
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z0V|A Chain A, Crystal Structure Of Bar Domain Of Endophilin-Iii
pdb|2Z0V|B Chain B, Crystal Structure Of Bar Domain Of Endophilin-Iii
Length = 240
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWR---WESHS 52
+GES K A+VK SLD N KQ F++P LL L+ L KL R ++
Sbjct: 101 VGESXKLXAEVKDSLDINVKQTFIDP----LQLLQDKDLKEIGHHLKKLEGRRLDYDYKK 156
Query: 53 SR-WRTSNDELKAAEEKFAESLHLAQMGMFNLLENDV 88
R + ++E++ A EKF ES LA+ FN LENDV
Sbjct: 157 KRVGKIPDEEVRQAVEKFEESKELAERSXFNFLENDV 193
>pdb|1ZWW|A Chain A, Crystal Structure Of Endophilin-A1 Bar Domain
pdb|1ZWW|B Chain B, Crystal Structure Of Endophilin-A1 Bar Domain
Length = 256
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MGESLKQMADVKYSLDDNTKQNFLEP-RGPKSTLLTTAPLRLGKLYWR----WESHSSRW 55
+GE+++++++VK SLD KQNF++P + L L KL R +
Sbjct: 117 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG 176
Query: 56 RTSNDELKAAEEKFAESLHLAQMGMFNLLENDV 88
+ ++EL+ A EKF ES +A+ MFNLLE D+
Sbjct: 177 KIPDEELRQALEKFDESKEIAESSMFNLLEMDI 209
>pdb|2D4C|A Chain A, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|B Chain B, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|C Chain C, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|D Chain D, Crystal Structure Of The Endophilin Bar Domain Mutant
Length = 256
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 17/101 (16%)
Query: 1 MGESLKQMADVKYSLDDNTKQNFLEP---------RGPKSTLLTTAPLRLGKLYWR---W 48
+GE+++++++VK SLD KQNF++P R +S L L KL R +
Sbjct: 122 VGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQSALQH----HLKKLEGRRLDF 177
Query: 49 ESHSSRW-RTSNDELKAAEEKFAESLHLAQMGMFNLLENDV 88
+ R + ++EL+ A EKF ES +A+ MFNLLE D+
Sbjct: 178 DYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDI 218
>pdb|2C08|A Chain A, Rat Endophilin A1 Bar Domain
Length = 204
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MGESLKQMADVKYSLDDNTKQNFLEP-RGPKSTLLTTAPLRLGKLYWR---WESHSSRW- 55
+GE+ +++++VK SLD KQNF++P + L L KL R ++ R
Sbjct: 74 VGEAXRELSEVKDSLDXEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQG 133
Query: 56 RTSNDELKAAEEKFAESLHLAQMGMFNLLENDV 88
+ ++EL+ A EKF ES +A+ FNLLE D+
Sbjct: 134 KIPDEELRQALEKFDESKEIAESSXFNLLEXDI 166
>pdb|1X04|A Chain A, Crystal Structure Of Endophilin Bar Domain (Mutant)
Length = 230
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MGESLKQMADVKYSLDDNTKQNFLEP-RGPKSTLLTTAPLRLGKLYWR---WESHSSRW- 55
+GE+ +++++VK SLD KQNF++P + L L KL R ++ R
Sbjct: 100 VGEAXRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQG 159
Query: 56 RTSNDELKAAEEKFAESLHLAQMGMFNLLENDV 88
+ ++EL+ A EKF ES +A+ FNLLE D+
Sbjct: 160 KIPDEELRQALEKFDESKEIAESSXFNLLEXDI 192
>pdb|1X03|A Chain A, Crystal Structure Of Endophilin Bar Domain
Length = 252
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MGESLKQMADVKYSLDDNTKQNFLEP-RGPKSTLLTTAPLRLGKLYWR---WESHSSRW- 55
+GE+ +++++VK SLD KQNF++P + L L KL R ++ R
Sbjct: 122 VGEAXRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQG 181
Query: 56 RTSNDELKAAEEKFAESLHLAQMGMFNLLENDV 88
+ ++EL+ A EKF ES +A+ FNLLE D+
Sbjct: 182 KIPDEELRQALEKFDESKEIAESSXFNLLEXDI 214
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 2 GESLKQMADVKYSLDDNTKQNFL--EPRGPKS 31
G +LK++AD DNT QN + + GP+S
Sbjct: 130 GMTLKELADASLRYSDNTAQNLILKQIGGPES 161
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 2 GESLKQMADVKYSLDDNTKQNFL--EPRGPKS 31
G +LK++AD DNT QN + + GP+S
Sbjct: 88 GMTLKELADASLRYSDNTAQNLILKQIGGPES 119
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 2 GESLKQMADVKYSLDDNTKQNFL--EPRGPKS 31
G +LK++AD DNT QN + + GP+S
Sbjct: 88 GMTLKELADASLRYSDNTAQNLILKQIGGPES 119
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 2 GESLKQMADVKYSLDDNTKQNFL--EPRGPKS 31
G +LK++AD DNT QN + + GP+S
Sbjct: 105 GMTLKELADASLRYSDNTAQNLILKQIGGPES 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,590,823
Number of Sequences: 62578
Number of extensions: 88103
Number of successful extensions: 217
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 12
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)