Query psy2452
Match_columns 91
No_of_seqs 82 out of 84
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 16:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1118|consensus 100.0 1.4E-33 3E-38 227.0 4.0 87 1-91 112-207 (366)
2 cd07617 BAR_Endophilin_B2 The 99.9 2.6E-27 5.6E-32 180.6 3.0 87 1-91 98-192 (220)
3 cd07613 BAR_Endophilin_A1 The 99.9 6.4E-27 1.4E-31 178.5 3.6 87 1-91 93-188 (223)
4 cd07615 BAR_Endophilin_A3 The 99.9 9.7E-27 2.1E-31 177.3 3.3 87 1-91 93-188 (223)
5 cd07614 BAR_Endophilin_A2 The 99.9 2.8E-25 6E-30 169.2 3.4 87 1-91 93-188 (223)
6 cd07592 BAR_Endophilin_A The B 99.9 1E-24 2.3E-29 165.2 3.1 87 1-91 93-188 (223)
7 cd07593 BAR_MUG137_fungi The B 99.9 3.8E-24 8.3E-29 161.6 2.5 89 1-91 80-180 (215)
8 cd07616 BAR_Endophilin_B1 The 99.9 1.1E-23 2.3E-28 161.2 2.9 87 1-91 98-201 (229)
9 cd07594 BAR_Endophilin_B The B 99.9 2.7E-23 5.8E-28 158.4 3.2 87 1-91 98-201 (229)
10 cd07620 BAR_SH3BP1 The Bin/Amp 99.8 3.6E-22 7.8E-27 155.8 3.7 87 1-91 85-209 (257)
11 cd07595 BAR_RhoGAP_Rich-like T 99.8 6.4E-21 1.4E-25 145.6 3.5 87 1-91 86-196 (244)
12 cd07619 BAR_Rich2 The Bin/Amph 99.8 6.6E-20 1.4E-24 141.9 3.4 87 1-91 86-200 (248)
13 cd07600 BAR_Gvp36 The Bin/Amph 99.8 3E-19 6.6E-24 137.0 2.4 86 1-91 112-214 (242)
14 cd07618 BAR_Rich1 The Bin/Amph 99.7 4.3E-19 9.3E-24 136.9 3.0 87 1-91 86-198 (246)
15 smart00721 BAR BAR domain. 98.9 2.3E-09 4.9E-14 76.8 4.6 84 1-89 100-206 (239)
16 PF03114 BAR: BAR domain; Int 98.2 4.5E-07 9.8E-12 62.9 1.2 83 1-88 97-196 (229)
17 cd07307 BAR The Bin/Amphiphysi 98.0 7.1E-06 1.5E-10 54.9 3.1 83 1-87 59-162 (194)
18 PF10455 BAR_2: Bin/amphiphysi 97.9 8.9E-06 1.9E-10 64.7 3.5 82 2-87 158-256 (289)
19 KOG3725|consensus 96.7 0.0011 2.4E-08 54.2 2.7 72 1-76 118-219 (375)
20 cd07603 BAR_ACAPs The Bin/Amph 92.4 0.21 4.5E-06 37.5 4.0 79 1-83 66-156 (200)
21 cd07606 BAR_SFC_plant The Bin/ 92.3 0.23 4.9E-06 37.6 4.1 46 2-51 69-120 (202)
22 cd07637 BAR_ACAP3 The Bin/Amph 90.6 0.35 7.6E-06 36.5 3.6 78 1-82 66-155 (200)
23 cd07639 BAR_ACAP1 The Bin/Amph 88.8 1 2.2E-05 34.3 4.9 76 2-81 67-154 (200)
24 cd07634 BAR_GAP10-like The Bin 81.1 3 6.5E-05 32.1 4.3 77 2-82 73-162 (207)
25 cd07602 BAR_RhoGAP_OPHN1-like 80.4 2.8 6E-05 32.1 3.9 69 1-73 72-160 (207)
26 cd07604 BAR_ASAPs The Bin/Amph 80.1 2.2 4.9E-05 32.5 3.3 46 2-51 69-121 (215)
27 cd07601 BAR_APPL The Bin/Amphi 76.2 4.7 0.0001 31.0 4.0 68 2-73 71-159 (215)
28 cd07636 BAR_GRAF The Bin/Amphi 73.5 7.7 0.00017 29.8 4.6 66 1-70 72-150 (207)
29 cd07588 BAR_Amphiphysin The Bi 72.6 2.6 5.7E-05 32.1 1.9 59 15-75 84-154 (211)
30 cd07591 BAR_Rvs161p The Bin/Am 68.7 3.1 6.8E-05 31.5 1.6 58 15-74 89-158 (224)
31 cd07638 BAR_ACAP2 The Bin/Amph 65.2 9.8 0.00021 28.9 3.6 69 2-74 67-154 (200)
32 cd07589 BAR_DNMBP The Bin/Amph 64.5 12 0.00025 27.6 3.9 59 14-74 81-147 (195)
33 cd07612 BAR_Bin2 The Bin/Amphi 64.4 1.7 3.7E-05 33.5 -0.6 39 11-51 80-121 (211)
34 cd07632 BAR_APPL2 The Bin/Amph 62.9 11 0.00023 29.6 3.5 80 2-85 71-179 (215)
35 cd07590 BAR_Bin3 The Bin/Amphi 58.3 10 0.00022 29.2 2.7 37 13-51 86-125 (225)
36 cd07635 BAR_GRAF2 The Bin/Amph 52.6 30 0.00065 26.6 4.4 45 3-51 74-124 (207)
37 cd07611 BAR_Amphiphysin_I_II T 46.9 7 0.00015 30.1 0.2 38 8-51 81-121 (211)
38 cd07605 I-BAR_IMD Inverse (I)- 45.0 52 0.0011 25.3 4.7 29 1-29 66-101 (223)
39 cd07624 BAR_SNX7_30 The Bin/Am 43.7 23 0.00049 26.1 2.5 79 1-81 75-162 (200)
40 PF11871 DUF3391: Domain of un 43.0 53 0.0011 21.6 4.0 27 59-85 91-117 (128)
41 cd07642 BAR_ASAP2 The Bin/Amph 38.8 39 0.00085 26.4 3.2 46 2-51 69-121 (215)
42 cd07629 BAR_Atg20p The Bin/Amp 34.4 25 0.00055 25.8 1.5 28 1-28 68-95 (187)
43 cd07631 BAR_APPL1 The Bin/Amph 33.6 87 0.0019 24.5 4.4 35 2-40 71-105 (215)
44 cd07599 BAR_Rvs167p The Bin/Am 33.2 51 0.0011 24.1 2.9 32 18-51 93-127 (216)
45 cd07628 BAR_Atg24p The Bin/Amp 31.1 28 0.0006 25.5 1.2 80 2-83 67-149 (185)
46 cd07598 BAR_FAM92 The Bin/Amph 29.9 64 0.0014 24.5 3.0 29 2-30 67-95 (211)
47 PF03172 Sp100: Sp100 domain; 26.9 83 0.0018 22.1 3.0 20 66-85 39-64 (103)
48 cd01395 HMT_MBD Methyl-CpG bin 24.4 54 0.0012 20.8 1.5 18 1-18 32-49 (60)
49 cd07653 F-BAR_CIP4-like The F- 22.9 1.3E+02 0.0028 22.1 3.6 24 5-28 74-97 (251)
50 KOG3771|consensus 20.5 2.9E+02 0.0063 24.1 5.6 31 19-51 106-139 (460)
51 PF08031 BBE: Berberine and be 20.1 96 0.0021 17.9 1.9 17 2-18 21-37 (47)
No 1
>KOG1118|consensus
Probab=99.98 E-value=1.4e-33 Score=227.01 Aligned_cols=87 Identities=46% Similarity=0.604 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+||.+|+++|++|+++|||||||||+ ++|.+|+| |||||||| ||| +|+|++| |||||+|.+||||
T Consensus 112 ~Gesm~~i~evk~sl~~~vkq~FldpL~----~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~dEelrqA~eKfEE 187 (366)
T KOG1118|consen 112 AGESMREIGEVKDSLDDNVKQNFLDPLQ----NLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKDEELRQALEKFEE 187 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH----HhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 4999999999999999999999999999 89999999 99999999 999 8888888 9999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
|+|+|+++|||||++|||||
T Consensus 188 SkE~aE~sM~nlle~d~eqv 207 (366)
T KOG1118|consen 188 SKELAEDSMFNLLENDVEQV 207 (366)
T ss_pred HHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999986
No 2
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=99.93 E-value=2.6e-27 Score=180.64 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC-hHHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS-NDELKAAEEKFAES 72 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k-deElr~A~eKfeES 72 (91)
+|+|+++||+++++++++|++|||+||+ .++.+|+| ||||+||| ||| +|.+..| ++||++|++||++|
T Consensus 98 ~g~a~~~ia~~~~~~~~~v~~~fl~pL~----~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~kf~~~ 173 (220)
T cd07617 98 VGETQKRLGAAERDFIHTSSINFLTPLR----NFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQTEFDRQ 173 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999 67777777 99999999 999 7777777 89999999999999
Q ss_pred HHHHHHHHhHHhhhccccC
Q psy2452 73 LHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 73 ~e~a~~~M~nlle~dveqv 91 (91)
.|+|.++|+||++||++||
T Consensus 174 ~E~a~~~M~~il~~~~e~l 192 (220)
T cd07617 174 AEVTRLLLEGISSTHVNHL 192 (220)
T ss_pred HHHHHHHHHHHHhcChHHH
Confidence 9999999999999999985
No 3
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=99.93 E-value=6.4e-27 Score=178.49 Aligned_cols=87 Identities=40% Similarity=0.581 Sum_probs=82.3
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+|+++||+++++++.+|++|||+||+ .++.+|+| ||||+||| ||| +|+|.++ ++||++|+.||++
T Consensus 93 ~G~A~~kla~~~~~~~~~i~~~fl~PL~----~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~~kFee 168 (223)
T cd07613 93 VGEAMRELSEVKDSLDMEVKQNFIDPLQ----NLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDE 168 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 6999999999999999999999999999 77888887 99999999 999 7777777 9999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
|+|+|.++|+|||+||++||
T Consensus 169 s~E~a~~~M~n~l~~e~e~~ 188 (223)
T cd07613 169 SKEIAESSMFNLLEMDIEQV 188 (223)
T ss_pred HHHHHHHHHHHHHHcCchHH
Confidence 99999999999999999985
No 4
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=99.93 E-value=9.7e-27 Score=177.33 Aligned_cols=87 Identities=48% Similarity=0.650 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+|+++||+++++++.+|++|||+||. .++..|+| ||||++|| ||| +|+|.++ ++|+++|+.||+|
T Consensus 93 ~G~A~~kla~~~~~~~~~v~~~fl~pL~----~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A~~kfee 168 (223)
T cd07615 93 VGESMKQMAEVKDSLDINVKQNFIDPLQ----LLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQAVEKFEE 168 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 6999999999999999999999999999 78888888 99999999 999 6666666 9999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
|+++|.++|+|||+||+|||
T Consensus 169 s~E~a~~~M~n~le~e~e~~ 188 (223)
T cd07615 169 SKELAERSMFNFLENDVEQV 188 (223)
T ss_pred HHHHHHHHHHHHHHcChHHH
Confidence 99999999999999999985
No 5
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=99.91 E-value=2.8e-25 Score=169.22 Aligned_cols=87 Identities=41% Similarity=0.558 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+|+.+||+++.+++..|++|||+||. .++..|+| ||||++|| ||| +|++.++ ++|||.|.+||++
T Consensus 93 ~G~a~~kia~~~~~~d~~i~~~fl~pL~----~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFee 168 (223)
T cd07614 93 AGESMKRLAEVKDSLDIEVKQNFIDPLQ----NLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEE 168 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 5999999999999999999999999999 67777777 99999999 999 7666666 8999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
|.|+|.++|+||+++|+++|
T Consensus 169 s~E~a~~~M~~il~~e~e~~ 188 (223)
T cd07614 169 SKEVAETSMHNLLETDIEQV 188 (223)
T ss_pred HHHHHHHHHHHHHhCChHHH
Confidence 99999999999999999975
No 6
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.90 E-value=1e-24 Score=165.21 Aligned_cols=87 Identities=53% Similarity=0.674 Sum_probs=81.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+|+.+||+++.+++..|++|||+||. .++..|+| ||||++|| ||| +|++.+| ++|+++|+.||++
T Consensus 93 ~g~a~~kIa~~~~~~d~~v~~~fl~pL~----~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~k~~eeEl~~Ae~kfe~ 168 (223)
T cd07592 93 VGEALKQLAEVKDSLDDNVKQNFLDPLQ----QLQDKDLKEINHHRKKLEGRRLDYDYKKRKQGKGPDEELKQAEEKFEE 168 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 6999999999999999999999999999 78888877 99999999 999 7666666 9999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
|.++|...|+||+++|+++|
T Consensus 169 s~E~a~~~M~~il~~e~e~~ 188 (223)
T cd07592 169 SKELAENSMFNLLENDVEQV 188 (223)
T ss_pred HHHHHHHHHHHHHhCchHHH
Confidence 99999999999999999875
No 7
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.89 E-value=3.8e-24 Score=161.59 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc-h--hcccCC------hHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH-S--SRWRTS------NDELKAAEEK 68 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD-k--Kr~~~k------deElr~A~eK 68 (91)
+|+|+.+||+++++|+..+++|||+||+++ +..+|+|. ||||++|| ||| . |.+++| ++||++|+.|
T Consensus 80 ~G~a~~kia~~q~~f~~~~~~~~l~pL~~~--l~~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~k 157 (215)
T cd07593 80 LGRAHCKIGTLQEEFADRLSDTFLANIERS--LAEMKEYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAK 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 599999999999999999999999999975 56667776 99999999 999 3 333333 9999999999
Q ss_pred HHHHHHHHHHHHhHHhhhccccC
Q psy2452 69 FAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 69 feES~e~a~~~M~nlle~dveqv 91 (91)
|++|.++|..+|+||++++++++
T Consensus 158 fees~E~a~~~M~~i~~~e~e~~ 180 (215)
T cd07593 158 YEESSEDVEARMVAIKESEADQY 180 (215)
T ss_pred HHHHHHHHHHHHHHHHhcChHHH
Confidence 99999999999999999999875
No 8
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=99.88 E-value=1.1e-23 Score=161.16 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcc--cCC--------hHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRW--RTS--------NDELK 63 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~--~~k--------deElr 63 (91)
+|+|+++||+++.+|+.+|++|||+||. .++..|+| ||||++|| ||| +|.+ ++| ++|++
T Consensus 98 ~g~a~~kia~~~~~~i~~~~~~Fl~PL~----~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr 173 (229)
T cd07616 98 CGETQKQIGTADRELIQTSAINFLTPLR----NFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELR 173 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHH
Confidence 5999999999999999999999999999 88888988 99999999 999 5433 332 89999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccC
Q psy2452 64 AAEEKFAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 64 ~A~eKfeES~e~a~~~M~nlle~dveqv 91 (91)
+|++||++|.++|.++|+||+++++++|
T Consensus 174 ~ae~efees~E~a~~~m~~i~~~~~e~~ 201 (229)
T cd07616 174 ITQSEFDRQAEITRLLLEGISSTHAHHL 201 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcChHHH
Confidence 9999999999999999999999999874
No 9
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=99.87 E-value=2.7e-23 Score=158.39 Aligned_cols=87 Identities=11% Similarity=0.234 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--hcccCC--------hHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--SRWRTS--------NDELK 63 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--Kr~~~k--------deElr 63 (91)
+|+|+.+||+++.+++..|++|||+||. .++..|+| ||||++|| ||| . |.+++| ++||+
T Consensus 98 ~g~a~~kia~~~~~~~~~i~~~fl~pL~----~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr 173 (229)
T cd07594 98 VGQAQKKLGQAEREFIQTSSSNFLQPLR----NFLEGDMKTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLR 173 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHH
Confidence 5999999999999999999999999999 67777777 99999999 999 4 334443 89999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccC
Q psy2452 64 AAEEKFAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 64 ~A~eKfeES~e~a~~~M~nlle~dveqv 91 (91)
+|++||++|.|+|.++|+||++++++||
T Consensus 174 ~Ae~kF~~~~E~a~~~M~~i~~~~~~~~ 201 (229)
T cd07594 174 VAQSEFDRQAEITKLLLEGISSTHANHL 201 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999875
No 10
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.85 E-value=3.6e-22 Score=155.85 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=80.7
Q ss_pred CcHHH-HHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhccc----------------
Q psy2452 1 MGESL-KQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWR---------------- 56 (91)
Q Consensus 1 ~Gea~-~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~---------------- 56 (91)
+|+++ ++||+++++++++|++|||+||. .++.+||+ ||||++|| ||| +|+|.
T Consensus 85 ~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~----~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~ 160 (257)
T cd07620 85 MCCFMQNMLANILADFEMKVEKDVLQPLN----KLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEE 160 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCcccccc
Confidence 46777 99999999999999999999999 89999999 99999999 999 66444
Q ss_pred ----------CC----hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccC
Q psy2452 57 ----------TS----NDELKAAEEKFAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 57 ----------~k----deElr~A~eKfeES~e~a~~~M~nlle~dveqv 91 (91)
+| +||+++|++|||+|++.+...|+||+++|+|+|
T Consensus 161 ~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~kE~e~a 209 (257)
T cd07620 161 VGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFATKEDSYA 209 (257)
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56 999999999999999999999999999999875
No 11
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.82 E-value=6.4e-21 Score=145.62 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=78.2
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhccc-------------CC--
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWR-------------TS-- 58 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~-------------~k-- 58 (91)
+|+++++||+++..++..|+++||+||. .++..|++ ||||++|| ||| .|.+. +|
T Consensus 86 ~g~a~~~ia~~~~~~d~~i~~~fl~pL~----~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~ 161 (244)
T cd07595 86 CGEAQNTLARELVDHEMNVEEDVLSPLQ----NILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVD 161 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccc
Confidence 5999999999999999999999999999 67777777 99999999 999 43332 23
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccC
Q psy2452 59 --NDELKAAEEKFAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 59 --deElr~A~eKfeES~e~a~~~M~nlle~dveqv 91 (91)
++|+++|+.|||+|+++|.+.|+|||++|+|+|
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~ 196 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIA 196 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 889999999999999999999999999999864
No 12
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.78 E-value=6.6e-20 Score=141.94 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=78.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhccc-----------------
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWR----------------- 56 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~----------------- 56 (91)
+|+++++||+++.++|.+|++|||+||. .++.+||+ ||+|++|| ||| +|.|.
T Consensus 86 ~gea~~kla~a~~~~d~~i~~~fl~PL~----~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~ 161 (248)
T cd07619 86 CGETEDKLAQELILFELQIERDVVEPLY----VLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTG 161 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCC
Confidence 5999999999999999999999999999 89999999 99999999 999 55442
Q ss_pred CChHHHHHHHHHHHHHHHHH----HHHHhHHhhhccccC
Q psy2452 57 TSNDELKAAEEKFAESLHLA----QMGMFNLLENDVSIA 91 (91)
Q Consensus 57 ~kdeElr~A~eKfeES~e~a----~~~M~nlle~dveqv 91 (91)
.++++||.+.++|+++++++ ...|+||+.||+|++
T Consensus 162 ~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~ 200 (248)
T cd07619 162 AKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDYA 200 (248)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 23789999999988888866 999999999999974
No 13
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.75 E-value=3e-19 Score=136.96 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=77.1
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcc--cC----C----hHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRW--RT----S----NDELK 63 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~--~~----k----deElr 63 (91)
+|+++++||+++..+|..++++||+||. .+..+|+| ||||++|| ||| .|.+ ++ + .+|++
T Consensus 112 ~g~a~~kIa~ar~~~D~~I~~~Fl~pL~----~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E 187 (242)
T cd07600 112 YSDAEEKIAEARLEQDQLIQKEFNAKLR----ETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVE 187 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHH
Confidence 5899999999999999999999999999 78888888 99999999 999 4433 33 2 78999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccC
Q psy2452 64 AAEEKFAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 64 ~A~eKfeES~e~a~~~M~nlle~dveqv 91 (91)
+|+.+|++|.++|...|+||+++ +++|
T Consensus 188 ~aEdef~~a~E~a~~~M~~il~~-~e~i 214 (242)
T cd07600 188 TAEDEFVSATEEAVELMKEVLDN-PEPL 214 (242)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhh-hHHH
Confidence 99999999999999999999998 7653
No 14
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.75 E-value=4.3e-19 Score=136.95 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=80.1
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhccc---------------CC
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWR---------------TS 58 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~---------------~k 58 (91)
+|+++++||+++.+++..|++|||+||. .++..||+ ||+|++|| ||| .|++. +|
T Consensus 86 ~gea~~kla~~~~~~d~~ie~~fl~PL~----~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K 161 (246)
T cd07618 86 CGDAENKLAFELSQHEVLLEKDILDPLN----QLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSK 161 (246)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccch
Confidence 5999999999999999999999999999 89999998 99999999 999 44433 44
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccC
Q psy2452 59 ----NDELKAAEEKFAESLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 59 ----deElr~A~eKfeES~e~a~~~M~nlle~dveqv 91 (91)
+||+.+|+.|||+|++.+...|+||+.+|+|++
T Consensus 162 ~~~l~ee~e~a~~k~E~~kD~~~~dm~~~l~~e~e~~ 198 (246)
T cd07618 162 IDMLKEEMDEAGNKVEQCKDQLAADMYNFASKEGEYA 198 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 789999999999999999999999999999864
No 15
>smart00721 BAR BAR domain.
Probab=98.88 E-value=2.3e-09 Score=76.82 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hh------ccc-C---------
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SS------RWR-T--------- 57 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kK------r~~-~--------- 57 (91)
+|+++..++.++..+ .++..+|+.|+. .....+++ +||++++| ||| .+ +++ .
T Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~----~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~ 174 (239)
T smart00721 100 LGEALKKLLQVEESL-SQVKRTFILPLL----NFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAK 174 (239)
T ss_pred HHHHHHHHHhhHHHH-HHHHHHhhhhHH----HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhh
Confidence 478899999999999 999999999999 67777776 99999999 999 33 111 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHhhhccc
Q psy2452 58 SNDELKAAEEKFAESLHLAQMGMFNLLENDVS 89 (91)
Q Consensus 58 kdeElr~A~eKfeES~e~a~~~M~nlle~dve 89 (91)
.+++++.|+++|+++.+.....|.+|+++.++
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~ 206 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVD 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 16999999999999999999999999988765
No 16
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=98.21 E-value=4.5e-07 Score=62.91 Aligned_cols=83 Identities=12% Similarity=0.268 Sum_probs=69.0
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcc-------cCC---hHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRW-------RTS---NDELK 63 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~-------~~k---deElr 63 (91)
+|+++..|+.+...+...+.+.+++||. .+. .+++ ++|++.++ ||| .+.+ +.+ ++++.
T Consensus 97 ~~~~~~~i~~~~~~~~~~~~~~vi~pl~----~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~ 171 (229)
T PF03114_consen 97 FGEAMQEIEEARKELESQIESTVIDPLK----EFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLE 171 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHH
Confidence 3788999999999999999999999999 455 6666 99999999 999 3211 222 79999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcc
Q psy2452 64 AAEEKFAESLHLAQMGMFNLLENDV 88 (91)
Q Consensus 64 ~A~eKfeES~e~a~~~M~nlle~dv 88 (91)
.|+.+|+...+.....|..|.....
T Consensus 172 ~a~~~f~~~~~~l~~~l~~l~~~~~ 196 (229)
T PF03114_consen 172 EAKEEFEALNEELKEELPKLFAKRQ 196 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876543
No 17
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=97.96 E-value=7.1e-06 Score=54.86 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h----cccC----C----h
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S----RWRT----S----N 59 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K----r~~~----k----d 59 (91)
+|.+...|+.....+...+...|++||. .....+++ +|+.+..| +|| . | +++. + +
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~~~v~~pL~----~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~ 134 (194)
T cd07307 59 FGKIQKELEEFRDQLEQKLENKVIEPLK----EYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAE 134 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Confidence 4788899999999999999999999999 56656665 99999999 999 2 1 1211 1 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q psy2452 60 DELKAAEEKFAESLHLAQMGMFNLLEND 87 (91)
Q Consensus 60 eElr~A~eKfeES~e~a~~~M~nlle~d 87 (91)
+++..|+.+|+.....+...|.+|...-
T Consensus 135 ~~~~~ar~~y~~~~~~~~~~l~~~~~~~ 162 (194)
T cd07307 135 EELQEAKEKYEELREELIEDLNKLEEKR 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999988888887654
No 18
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=97.92 E-value=8.9e-06 Score=64.72 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc--hh-ccc-CC-------hHHHHH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH--SS-RWR-TS-------NDELKA 64 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD--kK-r~~-~k-------deElr~ 64 (91)
+.++.+|++.+-.+|.-+.+.|..||. .+...+++ |||+++=| .|| +. -+. ++ ..++.+
T Consensus 158 S~~~~~I~~aRL~qD~~I~~~Fn~~l~----~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~ 233 (289)
T PF10455_consen 158 SSAYEKIAQARLEQDQLIQKEFNKKLQ----TTLNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQ 233 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHH
Confidence 467899999999999999999999999 78888888 99999999 999 32 222 22 235999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhc
Q psy2452 65 AEEKFAESLHLAQMGMFNLLEND 87 (91)
Q Consensus 65 A~eKfeES~e~a~~~M~nlle~d 87 (91)
|+..|..+.+.|-.-|.+|+++.
T Consensus 234 aEDeFv~aTeeAv~~Mk~vl~~~ 256 (289)
T PF10455_consen 234 AEDEFVSATEEAVEVMKEVLDNS 256 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999874
No 19
>KOG3725|consensus
Probab=96.72 E-value=0.0011 Score=54.20 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc--h-hcccCC-------------
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH--S-SRWRTS------------- 58 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD--k-Kr~~~k------------- 58 (91)
+|++-+||..+.-.|...+-.|||-||- .....|+| ||=|.++| |.| | +-+++|
T Consensus 118 vaetekrlG~AeReli~taa~nfLtPlR----nFlEGD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s 193 (375)
T KOG3725|consen 118 VAETEKRLGQAERELIGTAATNFLTPLR----NFLEGDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAELQTVRNSKTS 193 (375)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHH----HHhhccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhhhhcccccccc
Confidence 4678888888888899999999999999 68888888 99999999 999 3 444444
Q ss_pred --------hHHHHHHHHHHHHHHHHH
Q psy2452 59 --------NDELKAAEEKFAESLHLA 76 (91)
Q Consensus 59 --------deElr~A~eKfeES~e~a 76 (91)
+.|||.|...|+--.|+.
T Consensus 194 ~~~~ie~aEqelRvaQ~EFDrQaEiT 219 (375)
T KOG3725|consen 194 GGFTIEQAEQELRVAQAEFDRQAEIT 219 (375)
T ss_pred CcchHhHHHHHHHHHHHHHhHHHHHH
Confidence 778999998888665543
No 20
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.44 E-value=0.21 Score=37.52 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=58.2
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h---cccCChHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S---RWRTSNDELKAAEEK 68 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K---r~~~kdeElr~A~eK 68 (91)
+|.+++.|......|..++....++||. .....||+ ||+.+-=. +|| . | -.+.|..+++.|...
T Consensus 66 F~~~l~el~~~~~~L~~q~~~~i~~pL~----~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~~ 141 (200)
T cd07603 66 FIQALQEMNNFHTILLDQAQRTVSTQLQ----NFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATNI 141 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 3678899999999999999999999999 89999999 55555555 777 2 2 334456677777766
Q ss_pred HHHHHHHHHHHHhHH
Q psy2452 69 FAESLHLAQMGMFNL 83 (91)
Q Consensus 69 feES~e~a~~~M~nl 83 (91)
..++...-..+++++
T Consensus 142 L~~~Rk~f~~~sldy 156 (200)
T cd07603 142 LTATRSCFRHTALDY 156 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555555544
No 21
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.33 E-value=0.23 Score=37.59 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH 51 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD 51 (91)
+.++..|...+..|..++....+.||+ .....||+ ||+.+==+ +||
T Consensus 69 ~~~l~ei~~~~~~L~~q~~~~l~~pL~----~F~k~Dl~~vKe~kK~FdK~s~~yd 120 (202)
T cd07606 69 TSALREIGSYKEVLRSQVEHMLNDRLA----QFADTDLQEVKDARRRFDKASLDYE 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999 89999999 33333333 666
No 22
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.65 E-value=0.35 Score=36.47 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc---hhcc---cCChHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH---SSRW---RTSNDELKAAEEK 68 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD---kKr~---~~kdeElr~A~eK 68 (91)
+|.+++.|...+..|..++....++||. .....||+ ||+.+-=+ +|| .|-- +.+..+++.|...
T Consensus 66 F~~~l~ei~~~~~~l~~q~e~~l~~pL~----~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~ 141 (200)
T cd07637 66 FGDSLQEMVNYHMILFDQAQRSVRQQLH----SFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATST 141 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 4788899999999999999999999999 89999998 66666666 777 2321 2235566655555
Q ss_pred HHHHHHHHHHHHhH
Q psy2452 69 FAESLHLAQMGMFN 82 (91)
Q Consensus 69 feES~e~a~~~M~n 82 (91)
..++..--..+++|
T Consensus 142 L~~~Rk~f~~asLd 155 (200)
T cd07637 142 LTITRKCFRHLALD 155 (200)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444444
No 23
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.77 E-value=1 Score=34.27 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h---cccCChHHHHHHHHHH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S---RWRTSNDELKAAEEKF 69 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K---r~~~kdeElr~A~eKf 69 (91)
+.++..|.+....|.+++.-..+.||+ .....||+ ||+-+-=. +|| . | -++.|..|+..|.+-.
T Consensus 67 s~~l~ei~~~~~~Ll~~~~~~l~~~L~----~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~~l 142 (200)
T cd07639 67 SDGLNHILDSHAELLEATQFSFKQQLQ----LLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAAL 142 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHHHH
Confidence 456788888889999999999999999 89999988 55555555 666 2 1 2233455555554444
Q ss_pred HHHHHHHHHHHh
Q psy2452 70 AESLHLAQMGMF 81 (91)
Q Consensus 70 eES~e~a~~~M~ 81 (91)
+-+..-=+.+++
T Consensus 143 ~~~R~~F~~~~l 154 (200)
T cd07639 143 LGARATFRDRAL 154 (200)
T ss_pred HHHHHHHHHHHH
Confidence 444433333333
No 24
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=81.13 E-value=3 Score=32.09 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h---c-ccCChHHHHHHHHH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S---R-WRTSNDELKAAEEK 68 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K---r-~~~kdeElr~A~eK 68 (91)
|..+..|.+.+..|.+++.-..+.||+ .....||+ +|+.+-=+ +|| . | . ++.++.++..|.+-
T Consensus 73 s~~l~el~~~~~~L~~~~~~~l~~pL~----~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~ 148 (207)
T cd07634 73 ARLLIAVEEERRRLIQNANDVLIAPLE----KFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQ 148 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHH
Confidence 455677888899999999999999999 89999999 44444333 555 1 1 1 12224455555554
Q ss_pred HHHHHHHHHHHHhH
Q psy2452 69 FAESLHLAQMGMFN 82 (91)
Q Consensus 69 feES~e~a~~~M~n 82 (91)
.+-+...-+..|++
T Consensus 149 l~~~R~~F~~~~ld 162 (207)
T cd07634 149 IDREHQNFYEASLE 162 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444443333333
No 25
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=80.43 E-value=2.8 Score=32.14 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h----cccCC-------hH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S----RWRTS-------ND 60 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K----r~~~k-------de 60 (91)
+|.++..|.+-+.-|.+++....+.||+ .....||+ +|+-+-=. +|| . | .++.| ++
T Consensus 72 F~~~l~ei~~~r~~L~~q~~~~l~~pL~----~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~ 147 (207)
T cd07602 72 FGRLIETVEDERDRMLENAEEQLIEPLE----KFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADA 147 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Confidence 3667888999999999999999999999 88888888 44444333 777 2 2 11222 66
Q ss_pred HHHHHHHHHHHHH
Q psy2452 61 ELKAAEEKFAESL 73 (91)
Q Consensus 61 Elr~A~eKfeES~ 73 (91)
+|..++..|..+.
T Consensus 148 ~l~~~r~~f~~~~ 160 (207)
T cd07602 148 QLDMERRNFHQAS 160 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777776654
No 26
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=80.08 E-value=2.2 Score=32.46 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh------hcccCccc-ccc
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR------LGKLYWRW-ESH 51 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk------rKKLe~RR-dyD 51 (91)
|.++..|+.....|..++-...+.||+ .+...||+ +|+.+-=+ +||
T Consensus 69 ~~~l~El~~~~~~L~~~~~~~i~~pL~----~f~k~dL~~~k~e~KK~fdK~s~~ye 121 (215)
T cd07604 69 SVFTKELAALFKNLMQNLNNIIMFPLD----SLLKGDLKGSKGDLKKPFDKAWKDYE 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999 78888887 34444444 666
No 27
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.16 E-value=4.7 Score=30.99 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh----hcccCccc--ccc-h--h-----ccc--CC-----hH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR----LGKLYWRW--ESH-S--S-----RWR--TS-----ND 60 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk----rKKLe~RR--dyD-k--K-----r~~--~k-----de 60 (91)
+.++..|...+.-|..++....+.||+ .....||+ .||.-.+- +|| . | +++ ++ ++
T Consensus 71 s~~l~El~~~~~~L~~q~~~~l~~pL~----~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~ 146 (215)
T cd07601 71 SKVVDELSTMHSTLSSQLADTVLHPIS----QFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVND 146 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHH
Confidence 467888999999999999999999999 89999998 33333333 666 1 1 221 11 56
Q ss_pred HHHHHHHHHHHHH
Q psy2452 61 ELKAAEEKFAESL 73 (91)
Q Consensus 61 Elr~A~eKfeES~ 73 (91)
+|..++..|..+.
T Consensus 147 ~l~~~R~~F~~~~ 159 (215)
T cd07601 147 EVYACRKKQHQTA 159 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777654
No 28
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=73.52 E-value=7.7 Score=29.82 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h----cccCChHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S----RWRTSNDELKAAEE 67 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K----r~~~kdeElr~A~e 67 (91)
+|.++..|.+.+.-|.+++....+.||+ .....||+ +|+-+-=. +|| . | -++.|+.++..|..
T Consensus 72 F~~~L~ei~~~r~~L~~qa~~~l~~~L~----~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~ 147 (207)
T cd07636 72 FAAVLRNLEDERTRMIENASEVLITPLE----KFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADS 147 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHH
Confidence 3678899999999999999999999999 88888888 55555444 777 2 2 12344556665554
Q ss_pred HHH
Q psy2452 68 KFA 70 (91)
Q Consensus 68 Kfe 70 (91)
...
T Consensus 148 ~L~ 150 (207)
T cd07636 148 QVD 150 (207)
T ss_pred HHH
Confidence 443
No 29
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=72.63 E-value=2.6 Score=32.07 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=34.8
Q ss_pred HhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc-hhc-------ccCC-hHHHHHHHHHHHHHHHH
Q psy2452 15 LDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH-SSR-------WRTS-NDELKAAEEKFAESLHL 75 (91)
Q Consensus 15 ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD-kKr-------~~~k-deElr~A~eKfeES~e~ 75 (91)
|..-.....|+||.+- ..+-++++ -+|-..+. ||| -+. ++.+ +.-|.+|+++|+.|++.
T Consensus 84 l~~~l~~~Vl~Pl~~~--~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~ 154 (211)
T cd07588 84 LEEKLSDQVLGPLTAY--QSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKV 154 (211)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHH
Confidence 4445566778888854 55566666 55666666 999 221 1222 55566666666666554
No 30
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=68.70 E-value=3.1 Score=31.51 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=33.3
Q ss_pred HhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccch------h--cccCC-hHHHHHHHHHHHHHHH
Q psy2452 15 LDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESHS------S--RWRTS-NDELKAAEEKFAESLH 74 (91)
Q Consensus 15 ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyDk------K--r~~~k-deElr~A~eKfeES~e 74 (91)
++..+.+.-++|+.+- ..+-.+++ -+|-..++ |||+ | .++.+ +..|-.|+++++++++
T Consensus 89 l~~~~~~~V~~Pl~~~--~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~ 158 (224)
T cd07591 89 LDGPYRQTVLDPIGRF--NSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKE 158 (224)
T ss_pred HHhHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3344566778898854 44556666 66777777 9992 1 12222 3445555555555544
No 31
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.20 E-value=9.8 Score=28.93 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h---cccCC-------hHHH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S---RWRTS-------NDEL 62 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K---r~~~k-------deEl 62 (91)
+.++..|...+.-|.+++.-..+.||+ .....||+ ||+.+-=. +|| . | -.+.| +++|
T Consensus 67 ~~~l~ei~~~~~~L~~q~~~~l~~~L~----~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l 142 (200)
T cd07638 67 SDTLQEMINYHTILFDQAQRSIKAQLQ----TFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNIL 142 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHH
Confidence 567888999999999999999999999 89999998 44444333 666 2 1 11222 3467
Q ss_pred HHHHHHHHHHHH
Q psy2452 63 KAAEEKFAESLH 74 (91)
Q Consensus 63 r~A~eKfeES~e 74 (91)
..++..|..+.=
T Consensus 143 ~~~r~~F~~~~l 154 (200)
T cd07638 143 TATRKCFRHIAL 154 (200)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 32
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=64.51 E-value=12 Score=27.60 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=34.8
Q ss_pred HHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc-hhcc---cCC-hHHHHHHHHHHHHHHH
Q psy2452 14 SLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH-SSRW---RTS-NDELKAAEEKFAESLH 74 (91)
Q Consensus 14 ~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD-kKr~---~~k-deElr~A~eKfeES~e 74 (91)
.+...+....+.|+.+- ..+-++++ -+|-..+. ||| -+-+ -.+ ++++..|.+.|+.-.+
T Consensus 81 e~~~~i~~~V~~Pl~~~--~~~~~~~~k~I~KR~~KllDYdr~~~~~~k~~k~e~~l~~a~~~y~~lN~ 147 (195)
T cd07589 81 EFKSRVRKLVIEPLSSL--LKLFSGPQKLIQKRYDKLLDYERYKEKKERGGKVDEELEEAANQYEALNA 147 (195)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHhhhhccHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 34455566666777632 22334444 56666777 999 2222 233 7788888888876554
No 33
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=64.41 E-value=1.7 Score=33.48 Aligned_cols=39 Identities=5% Similarity=0.036 Sum_probs=26.9
Q ss_pred HHHHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc
Q psy2452 11 VKYSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH 51 (91)
Q Consensus 11 ik~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD 51 (91)
.=..|+.-+....|+||.+- ..+=.+++ -+|-+-.- |||
T Consensus 80 ~~~~~~~~~~~~vL~pi~~~--~s~f~~i~~~i~KR~~KllDYD 121 (211)
T cd07612 80 LWNDYEAKLHDQALRTMESY--MAQFPDVKERVAKRGRKLVDYD 121 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHH
Confidence 44567777778899999964 55667777 44444444 999
No 34
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=62.87 E-value=11 Score=29.61 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh----hcccCccc--ccc-h--------hcccC-C-----hH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR----LGKLYWRW--ESH-S--------SRWRT-S-----ND 60 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk----rKKLe~RR--dyD-k--------Kr~~~-k-----de 60 (91)
+..+..|-+.+.-|.+++....+.||+ .....||+ .||.-.+- +|| . |+|.. + +.
T Consensus 71 s~~L~el~~~h~~L~dqaq~sl~~pL~----~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~ 146 (215)
T cd07632 71 AKVVDELNVLHSELAKQLADTMVLPII----QFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAK 146 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHH
Confidence 456777888889999999999999999 89999999 44444444 888 2 22222 1 23
Q ss_pred HHHHHHHHHHH-HHHHHH-------HHHhHHhh
Q psy2452 61 ELKAAEEKFAE-SLHLAQ-------MGMFNLLE 85 (91)
Q Consensus 61 Elr~A~eKfeE-S~e~a~-------~~M~nlle 85 (91)
+|-.+..+|-. |.+-|. +..|.||+
T Consensus 147 ~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE 179 (215)
T cd07632 147 EVAYSRRKQHLSSLQYYCALNALQYRKRVAMLE 179 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888887 666554 55555554
No 35
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.34 E-value=10 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=25.1
Q ss_pred HHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc
Q psy2452 13 YSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH 51 (91)
Q Consensus 13 ~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD 51 (91)
..++......+|+||.+- ..+-.+++ -+|-+.-- |||
T Consensus 86 ~~~~~~~~~~vl~Pl~~~--~s~f~~I~~~I~KR~~Kl~DYD 125 (225)
T cd07590 86 QELVNLIQKTFIEPLKRL--RSVFPSVNAAIKRREQSLQEYE 125 (225)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHH
Confidence 345666777899999965 55667777 44444444 899
No 36
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=52.56 E-value=30 Score=26.61 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc
Q psy2452 3 ESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH 51 (91)
Q Consensus 3 ea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD 51 (91)
.++..|.+-..-|..++-...+.||+ .....||+ +|+-+-=. +||
T Consensus 74 ~~~~el~d~r~~L~~~~~~~l~~pL~----~F~kedl~~~Ke~KK~FdK~se~~~ 124 (207)
T cd07635 74 NFLKNLEEQREIMALNVTETLIKPLE----RFRKEQLGAVKEEKKKFDKETEKNY 124 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34445555556666666888999999 89999998 44444333 888
No 37
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=46.94 E-value=7 Score=30.14 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc
Q psy2452 8 MADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH 51 (91)
Q Consensus 8 ~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD 51 (91)
+.+.+..+++.| |+|+.+- ..+-.+++ -+|=+--- |||
T Consensus 81 ~~dl~~~lv~~v----l~P~~~~--~s~f~~I~~~I~KR~hKllDYD 121 (211)
T cd07611 81 WEDFHQKLVDGA----LLTLDTY--LGQFPDIKNRIAKRSRKLVDYD 121 (211)
T ss_pred HHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHhhHH
Confidence 345556665664 9999965 56667777 23323223 899
No 38
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=45.03 E-value=52 Score=25.33 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhc-------ccCCCC
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNF-------LEPRGP 29 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nf-------LepL~~ 29 (91)
+|.++.+|+++..++....++.+ |.||+.
T Consensus 66 lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~ 101 (223)
T cd07605 66 LGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEK 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58999999999988888877665 999993
No 39
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.66 E-value=23 Score=26.08 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc-h----hcccC-ChHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH-S----SRWRT-SNDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD-k----Kr~~~-kdeElr~A~eKfeE 71 (91)
+|.+..+++.....+-...-.+|++||.-- .....-+| .++-..-+ +|. . -+++. =..++..|+.+||.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey--~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~ 152 (200)
T cd07624 75 VSSAVERCTAALEVLLSDHEFVFLPPLREY--LLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLEC 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777789999999821 22333344 22222234 666 1 12222 26778888888888
Q ss_pred HHHHHHHHHh
Q psy2452 72 SLHLAQMGMF 81 (91)
Q Consensus 72 S~e~a~~~M~ 81 (91)
+.+....=|.
T Consensus 153 ~~~~~~~E~~ 162 (200)
T cd07624 153 ANADLKADLE 162 (200)
T ss_pred HHHHHHHHHH
Confidence 8776644443
No 40
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=43.04 E-value=53 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy2452 59 NDELKAAEEKFAESLHLAQMGMFNLLE 85 (91)
Q Consensus 59 deElr~A~eKfeES~e~a~~~M~nlle 85 (91)
.+|++.|..-|.+|...+..-|.++..
T Consensus 91 ~~e~~~A~~~~~~a~~~~~~~~~~~~~ 117 (128)
T PF11871_consen 91 EEELRRAERLYQEAKQVVRSLFNDVRA 117 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999999999999998888754
No 41
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=38.82 E-value=39 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhhh-----cc-cCccc-ccc
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLRL-----GK-LYWRW-ESH 51 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlkr-----KK-Le~RR-dyD 51 (91)
|-....|+.....|.+++...-.-||+ .+...|||. || .+-=| |||
T Consensus 69 ~~~~~El~~l~~~L~~~~~~~I~~pl~----s~lK~dLr~vK~d~KK~fdK~~~dyE 121 (215)
T cd07642 69 SVFTKELTALFKNLVQNMNNIITFPLD----SLLKGDLKGVKGDLKKPFDKAWKDYE 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556777888888999999999999999 788878872 33 44445 788
No 42
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.36 E-value=25 Score=25.83 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCC
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRG 28 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~ 28 (91)
+|.++...+-.-+.+..+.-.+|++||.
T Consensus 68 ~g~a~D~~~~~~~~l~~~l~~~f~EpL~ 95 (187)
T cd07629 68 VGQAVDSTYLATEALVGSLYYNINEPLS 95 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3556666667777888889999999998
No 43
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=33.55 E-value=87 Score=24.49 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR 40 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk 40 (91)
+.++..|.+.+.-|-+++....+.||+ .....||+
T Consensus 71 s~~L~El~~~~~~L~~q~~~sl~~pL~----~F~kedL~ 105 (215)
T cd07631 71 SKVIDELSSCHAVLSTQLADAMMFPIT----QFKERDLK 105 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 567788999999999999999999999 89999998
No 44
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=33.15 E-value=51 Score=24.12 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=19.1
Q ss_pred hhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc
Q psy2452 18 NTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH 51 (91)
Q Consensus 18 ~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD 51 (91)
.+...-+.|+.+- ..+-++++ -+|=+.++ |||
T Consensus 93 ~i~~~V~~P~~~~--~~~~~~i~k~IkKR~~k~lDyd 127 (216)
T cd07599 93 FFEERVILPAKEL--KKYIKKIRKTIKKRDHKKLDYD 127 (216)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHH
Confidence 3455667777732 23345555 56666667 999
No 45
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.09 E-value=28 Score=25.47 Aligned_cols=80 Identities=19% Similarity=0.081 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccchhcccCChHHHHHHHHHHHHHHHHHHH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESHSSRWRTSNDELKAAEEKFAESLHLAQM 78 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyDkKr~~~kdeElr~A~eKfeES~e~a~~ 78 (91)
|..+..++..-..+-..+-.+|++||.-. ..-..-+| .|.=...+ +|..------.+++..|...|+.....+..
T Consensus 67 ~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~--~~y~~s~k~~lk~R~~kq~d~e~l~e~ll~~~ve~a~~~~e~f~~~~~~ 144 (185)
T cd07628 67 SESLSQFSTSLRVLNKYTDENYLTSLKDL--LHYILSLKNLIKLRDQKQLDYEELSDYLLTDEVENAKETSDAFNKEVLK 144 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677777777788888999999821 12222233 22223333 555100000156778888888887777766
Q ss_pred HHhHH
Q psy2452 79 GMFNL 83 (91)
Q Consensus 79 ~M~nl 83 (91)
-|-+|
T Consensus 145 E~~rF 149 (185)
T cd07628 145 EYPNF 149 (185)
T ss_pred HHHHH
Confidence 66554
No 46
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.89 E-value=64 Score=24.47 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCC
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPK 30 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~ 30 (91)
|+++..|.+....-+...-..|++||..-
T Consensus 67 ae~~~~i~d~~q~qv~~l~~~v~epLk~Y 95 (211)
T cd07598 67 AECLAALQDYRQAEVERLEAKVVQPLALY 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677778899999854
No 47
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=26.93 E-value=83 Score=22.13 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.3
Q ss_pred HHHHHHHHHH------HHHHHhHHhh
Q psy2452 66 EEKFAESLHL------AQMGMFNLLE 85 (91)
Q Consensus 66 ~eKfeES~e~------a~~~M~nlle 85 (91)
+.+|+||.+. +.+.|.|+|.
T Consensus 39 E~~y~e~~e~crnlvpv~rvvY~vLs 64 (103)
T PF03172_consen 39 EQMYKESQEACRNLVPVQRVVYNVLS 64 (103)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5789999988 8999999985
No 48
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=24.38 E-value=54 Score=20.76 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHHHHhhh
Q psy2452 1 MGESLKQMADVKYSLDDN 18 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~ 18 (91)
+|++++.|+||+.=|...
T Consensus 32 CGr~Lr~~~EV~~YL~~t 49 (60)
T cd01395 32 CGRSLRNMSEVHRYLRET 49 (60)
T ss_pred cchhhhcHHHHHHHHHhc
Confidence 599999999999888776
No 49
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=22.86 E-value=1.3e+02 Score=22.13 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCC
Q psy2452 5 LKQMADVKYSLDDNTKQNFLEPRG 28 (91)
Q Consensus 5 ~~~~a~ik~~ld~~vk~nfLepL~ 28 (91)
...+|.+...+..+....-++||.
T Consensus 74 ~~~~a~~H~~~a~~l~~~v~~~l~ 97 (251)
T cd07653 74 VNDIAGQHELIAENLNSNVCKELK 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888887
No 50
>KOG3771|consensus
Probab=20.51 E-value=2.9e+02 Score=24.07 Aligned_cols=31 Identities=13% Similarity=-0.059 Sum_probs=19.0
Q ss_pred hhhhcccCCCCCcchhhhhhhh-hcccCccc--ccc
Q psy2452 19 TKQNFLEPRGPKSTLLTTAPLR-LGKLYWRW--ESH 51 (91)
Q Consensus 19 vk~nfLepL~~~~s~l~~kdlk-rKKLe~RR--dyD 51 (91)
+-..-|.||+.. +-+-.||+ +=+=-||+ |||
T Consensus 106 l~d~vl~pl~~~--~~~fpdik~~i~KR~~Kl~DyD 139 (460)
T KOG3771|consen 106 LVDQVLLPLDTY--LGQFPDIKKAIAKRGRKLVDYD 139 (460)
T ss_pred HHHhhhhhHHHh--hhhchhHHHHHHhhcchhhhhH
Confidence 344557788865 56667777 22223556 898
No 51
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=20.07 E-value=96 Score=17.94 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy2452 2 GESLKQMADVKYSLDDN 18 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~ 18 (91)
|..+.+|..||..+|-+
T Consensus 21 g~n~~rL~~iK~~yDP~ 37 (47)
T PF08031_consen 21 GENYDRLRAIKRKYDPD 37 (47)
T ss_dssp GGGHHHHHHHHHHH-TT
T ss_pred chhHHHHHHHHHHhCcc
Confidence 77889999999998753
Done!