Query psy2452
Match_columns 91
No_of_seqs 82 out of 84
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 16:41:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z0v_A SH3-containing GRB2-lik 99.8 1.5E-19 5.3E-24 133.2 2.5 87 1-91 101-196 (240)
2 1zww_A SH3-containing GRB2-lik 99.7 1.3E-18 4.5E-23 129.0 2.4 87 1-91 117-212 (256)
3 2fic_A Bridging integrator 1; 98.1 1.8E-07 6.3E-12 67.6 -1.8 80 2-87 114-213 (251)
4 1uru_A Amphiphysin; endocytosi 97.9 3.1E-07 1.1E-11 65.3 -3.5 77 6-88 100-193 (244)
5 2q12_A DIP13 alpha, DCC-intera 97.4 7.9E-05 2.7E-09 54.4 3.3 80 1-84 89-182 (265)
6 2q13_A DCC-interacting protein 97.0 0.00044 1.5E-08 52.8 3.7 47 1-51 89-141 (385)
7 4h8s_A DCC-interacting protein 92.1 0.12 4.2E-06 39.5 3.7 78 2-83 113-211 (407)
8 4avm_A Bridging integrator 2; 32.9 17 0.00059 26.2 1.5 31 19-51 109-142 (237)
9 2fic_A Bridging integrator 1; 31.1 55 0.0019 22.9 3.9 26 64-90 183-208 (251)
10 4a3a_A Amphiphysin; structural 27.4 23 0.00079 25.8 1.4 52 22-75 117-187 (243)
11 3tj5_B Metavinculin, SCA-famil 21.3 33 0.0011 18.3 0.9 10 77-86 14-23 (27)
No 1
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=133.16 Aligned_cols=87 Identities=46% Similarity=0.607 Sum_probs=80.1
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+++.+|++++..++..+.++||+||. .+...|++ ||||+++| ||| .|.+..+ ++|++.|+.+|++
T Consensus 101 ~g~a~~~ia~~~~~~~~~v~~~~l~pL~----~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~~~fe~ 176 (240)
T 2z0v_A 101 VGESMKLMAEVKDSLDINVKQTFIDPLQ----LLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEE 176 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH----HHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5899999999999999999999999999 77778877 99999999 999 6666655 9999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
+.+.+...|+||++++++++
T Consensus 177 ~~e~~~~~m~~~~~~~~e~l 196 (240)
T 2z0v_A 177 SKELAERSMFNFLENDVEQV 196 (240)
T ss_dssp HHHHHHHHHHHHHHSTHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999998763
No 2
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=99.72 E-value=1.3e-18 Score=128.98 Aligned_cols=87 Identities=40% Similarity=0.575 Sum_probs=79.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhcccCC--hHHHHHHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSRWRTS--NDELKAAEEKFAE 71 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr~~~k--deElr~A~eKfeE 71 (91)
+|+++.+|++++..++..+.++||+||. .+...+++ ||||+++| ||| .|.+..| ++|+++|+.+|++
T Consensus 117 ~g~a~~~la~~~~~~~~~i~~~~l~pl~----~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~~fe~ 192 (256)
T 1zww_A 117 VGEAMRELSEVKDSLDMEVKQNFIDPLQ----NLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDE 192 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH----HHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5899999999999999999999999999 77787877 99999999 999 5555555 9999999999999
Q ss_pred HHHHHHHHHhHHhhhccccC
Q psy2452 72 SLHLAQMGMFNLLENDVSIA 91 (91)
Q Consensus 72 S~e~a~~~M~nlle~dveqv 91 (91)
+.+.+...|.||+++++++|
T Consensus 193 ~~e~~~~~m~~l~~~e~e~~ 212 (256)
T 1zww_A 193 SKEIAESSMFNLLEMDIEQV 212 (256)
T ss_dssp HHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999998763
No 3
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=98.09 E-value=1.8e-07 Score=67.62 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=48.3
Q ss_pred cHHHH-HHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc-hhcc-------cCC--------hHH
Q psy2452 2 GESLK-QMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH-SSRW-------RTS--------NDE 61 (91)
Q Consensus 2 Gea~~-~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD-kKr~-------~~k--------deE 61 (91)
|+++. .+.++++ .+..+||+||... ..+.++++ .+|.++|+ ||| .+.+ +.+ ++|
T Consensus 114 ~~~~~~~~~d~~~----~l~~~vi~Pl~~~--~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~e 187 (251)
T 2fic_A 114 AENNDLLWMDYHQ----KLVDQALLTMDTY--LGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 187 (251)
T ss_dssp HHHHHHHHHHHHH----HHHHHTHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 44444 2444544 4457899999943 33455555 99999999 999 3221 111 556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhc
Q psy2452 62 LKAAEEKFAESLHLAQMGMFNLLEND 87 (91)
Q Consensus 62 lr~A~eKfeES~e~a~~~M~nlle~d 87 (91)
+..|++.|+...+....-|-.|.++.
T Consensus 188 l~~ak~~ye~ln~~L~~eLp~l~~~~ 213 (251)
T 2fic_A 188 LIKAQKVFEEMNVDLQEELPSLWNSR 213 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666656665555543
No 4
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=97.91 E-value=3.1e-07 Score=65.31 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-hhc-----c-c---CC-hHHHHHHHHH
Q psy2452 6 KQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-SSR-----W-R---TS-NDELKAAEEK 68 (91)
Q Consensus 6 ~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-kKr-----~-~---~k-deElr~A~eK 68 (91)
+.+..+...+...+..+||+||. .+. ..++ .+|.++++ ||| .+. + + .+ +..|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~vi~Pl~----~~~-~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~e 174 (244)
T 1uru_A 100 GASESLWADFAHKLGDQVLIPLN----TYT-GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQ 174 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence 44667777899999999999999 444 4555 89999999 999 321 1 1 12 4444455555
Q ss_pred HHHHHHHHHHHHhHHhhhcc
Q psy2452 69 FAESLHLAQMGMFNLLENDV 88 (91)
Q Consensus 69 feES~e~a~~~M~nlle~dv 88 (91)
|++|++..+ ++.+.|-+|+
T Consensus 175 l~~ak~~ye-~ln~~L~~eL 193 (244)
T 1uru_A 175 LEEARRTYE-ILNTELHDEL 193 (244)
T ss_dssp HHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHh
Confidence 555555444 4445554443
No 5
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=97.44 E-value=7.9e-05 Score=54.39 Aligned_cols=80 Identities=8% Similarity=0.082 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc---hh---cccCC--hHHHHHHH
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH---SS---RWRTS--NDELKAAE 66 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD---kK---r~~~k--deElr~A~ 66 (91)
+|++++.|......+..++..++++||. .+...||+ ||+++..+ +|| .| -.+.| +..++.|.
T Consensus 89 f~~~l~ei~~~~~~l~~~~~~~~~~PL~----~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~ 164 (265)
T 2q12_A 89 FSKVIDELSSCHAVLSTQLADAMMFPIT----QFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVT 164 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH----HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHH
Confidence 4788899999999999999999999999 89999988 99999999 999 23 23333 44567777
Q ss_pred HHHHHHHHHHHHHHhHHh
Q psy2452 67 EKFAESLHLAQMGMFNLL 84 (91)
Q Consensus 67 eKfeES~e~a~~~M~nll 84 (91)
.++.++...-...++++.
T Consensus 165 ~~l~~~Rk~f~~~~ldyv 182 (265)
T 2q12_A 165 EDVYTSRKKQHQTMMHYF 182 (265)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777776654
No 6
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=97.03 E-value=0.00044 Score=52.79 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc
Q psy2452 1 MGESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH 51 (91)
Q Consensus 1 ~Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD 51 (91)
+|.+++.|+.....|..++..++++||. .+...||+ ||+++..+ +||
T Consensus 89 f~~~~~ei~~~~~~l~~~~~~~~~~PL~----~f~~~di~~~ke~kk~fek~~~~yd 141 (385)
T 2q13_A 89 FSKVIDELSSCHAVLSTQLADAMMFPIT----QFKERDLKEILTLKEVFQIASNDHD 141 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH----HHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999 88989988 99999999 999
No 7
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=92.14 E-value=0.12 Score=39.47 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcccCCCCCcchhhhhhhh-----hcccCccc-ccc-h--h---cccCC---------hH
Q psy2452 2 GESLKQMADVKYSLDDNTKQNFLEPRGPKSTLLTTAPLR-----LGKLYWRW-ESH-S--S---RWRTS---------ND 60 (91)
Q Consensus 2 Gea~~~~a~ik~~ld~~vk~nfLepL~~~~s~l~~kdlk-----rKKLe~RR-dyD-k--K---r~~~k---------de 60 (91)
+.++..+......|..++...+++||. .+...||+ ||+++-.. +|| . | -.+.| +.
T Consensus 113 ~~~~~ei~~~~~~L~~~~~~~i~~pL~----~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k~~~~~~~e~~~ 188 (407)
T 4h8s_A 113 SKVVDELNLLHTELAKQLADTMVLPII----QFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGK 188 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHH----HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 456777788888889999999999999 78888887 88899888 999 2 2 11222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q psy2452 61 ELKAAEEKFAESLHLAQMGMFNL 83 (91)
Q Consensus 61 Elr~A~eKfeES~e~a~~~M~nl 83 (91)
++-.++..|+.+.-+....|.+|
T Consensus 189 ~l~~~Rk~f~~asldyv~~l~~l 211 (407)
T 4h8s_A 189 EVAAARRKQHLSSLQYYCALNAL 211 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777655555555444
No 8
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=32.94 E-value=17 Score=26.18 Aligned_cols=31 Identities=3% Similarity=-0.007 Sum_probs=18.3
Q ss_pred hhhhcccCCCCCcchhhhhhhh--hcccCccc-ccc
Q psy2452 19 TKQNFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH 51 (91)
Q Consensus 19 vk~nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD 51 (91)
+....|.||..- ..+-++++ -+|-+.+. |||
T Consensus 109 l~~~vi~Pl~~~--~~~~~~i~k~I~KR~~kllDyd 142 (237)
T 4avm_A 109 LADQAVRTMEIY--VAQFSEIKERIAKRGRKLVDYD 142 (237)
T ss_dssp HCCCCCHHHHHH--HHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 344468888832 23344555 55556666 999
No 9
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=31.05 E-value=55 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcccc
Q psy2452 64 AAEEKFAESLHLAQMGMFNLLENDVSI 90 (91)
Q Consensus 64 ~A~eKfeES~e~a~~~M~nlle~dveq 90 (91)
.|+++|++|++..+ .+.+.|-.|+.+
T Consensus 183 kae~el~~ak~~ye-~ln~~L~~eLp~ 208 (251)
T 2fic_A 183 KAEEELIKAQKVFE-EMNVDLQEELPS 208 (251)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 47888999999877 788888777643
No 10
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=27.43 E-value=23 Score=25.79 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=27.4
Q ss_pred hcccCCCCCcchhhhhhhh--hcccCccc-ccc-hh-------cccCC--------hHHHHHHHHHHHHHHHH
Q psy2452 22 NFLEPRGPKSTLLTTAPLR--LGKLYWRW-ESH-SS-------RWRTS--------NDELKAAEEKFAESLHL 75 (91)
Q Consensus 22 nfLepL~~~~s~l~~kdlk--rKKLe~RR-dyD-kK-------r~~~k--------deElr~A~eKfeES~e~ 75 (91)
.-|.||..- .-+-.+++ -+|-+.+. ||| -+ -++.| ++|+..|+..|+.-...
T Consensus 117 ~~l~Pl~~l--~~~f~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~lN~~ 187 (243)
T 4a3a_A 117 GSLLTLDTY--LGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVD 187 (243)
T ss_dssp THHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHChHHHHHHHHhcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346787732 22335555 55556666 999 21 11222 55566666666655443
No 11
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=21.27 E-value=33 Score=18.27 Aligned_cols=10 Identities=30% Similarity=0.165 Sum_probs=7.7
Q ss_pred HHHHhHHhhh
Q psy2452 77 QMGMFNLLEN 86 (91)
Q Consensus 77 ~~~M~nlle~ 86 (91)
-.+|+|||+.
T Consensus 14 S~sMQdLLn~ 23 (27)
T 3tj5_B 14 SGSMQYLLNY 23 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4689999864
Done!