RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2452
         (91 letters)



>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
           splicing, coiled coil, SH3 domain, endocytosis,
           structural genomics, NPPSFA; 2.49A {Homo sapiens}
          Length = 240

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 1   MGESLKQMADVKYSLDDNTKQNFLEP-RGPKSTLLTTAPLRLGKLYWR---WESHSSRWR 56
           +GES+K MA+VK SLD N KQ F++P +  +   L      L KL  R   ++    R  
Sbjct: 101 VGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVG 160

Query: 57  TSND-ELKAAEEKFAESLHLAQMGMFNLLENDV 88
              D E++ A EKF ES  LA+  MFN LENDV
Sbjct: 161 KIPDEEVRQAVEKFEESKELAERSMFNFLENDV 193


>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
           {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
           2c08_A
          Length = 256

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 1   MGESLKQMADVKYSLDDNTKQNFLEP-RGPKSTLLTTAPLRLGKLYWR---WESHSSRWR 56
           +GE+++++++VK SLD   KQNF++P +      L      L KL  R   +     R  
Sbjct: 117 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG 176

Query: 57  TSND-ELKAAEEKFAESLHLAQMGMFNLLENDVSIA 91
              D EL+ A EKF ES  +A+  MFNLLE D+   
Sbjct: 177 KIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQV 212


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.127    0.374 

Gapped
Lambda     K      H
   0.267   0.0831    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,258,449
Number of extensions: 56463
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 6
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.2 bits)