RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2455
(414 letters)
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
phosphatases are non-specific phosphomonoesterases that
catalyze the hydrolysis reaction via a phosphoseryl
intermediate to produce inorganic phosphate and the
corresponding alcohol, optimally at high pH. Alkaline
phosphatase exists as a dimer, each monomer binding 2
zinc atoms and one magnesium atom, which are essential
for enzymatic activity.
Length = 384
Score = 170 bits (433), Expect = 4e-49
Identities = 74/174 (42%), Positives = 97/174 (55%), Gaps = 32/174 (18%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAY +GVK N G +GVS V+R+D + V ++ +WA+ K+TG+VTTTRVTHA
Sbjct: 68 TAYATGVKTNNGAIGVSADVSRDD----TDNGKPVTSVLEWAKAAGKATGIVTTTRVTHA 123
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPAA YAH +R WE EDIA QLI +PG ++V++GGGR FLP
Sbjct: 124 TPAAFYAHVPDRNWE---------------EDIAEQLIEEAPGRGIDVLLGGGRRYFLP- 167
Query: 361 FAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYLL 414
G RKD RDL+ W + K YV N+T+L+ VN + LL
Sbjct: 168 -----STTGGGRKDGRDLIAEW------KAKGYQYVWNRTELLAVNVATD-KLL 209
Score = 156 bits (397), Expect = 7e-44
Identities = 84/216 (38%), Positives = 110/216 (50%), Gaps = 61/216 (28%)
Query: 25 LNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKD-CDKS 83
LN+KKA+NVILF+GDGM ++TITAARIY GQ+ G EE +L F++FP TGLSK S
Sbjct: 1 LNKKKAKNVILFIGDGMGVSTITAARIYKGQENGA--EEGKLLFDDFPLTGLSKTYSVDS 58
Query: 84 TGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGLSVRS 143
VT + A TA A + +
Sbjct: 59 Q-------VTDSAATA----TA----------------------YATGVKTNNG------ 79
Query: 144 TLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANR 203
+GVS V+R+D + V ++ +WA+ K+TG+VTTTRVTHATPAA YAH +R
Sbjct: 80 AIGVSADVSRDD----TDNGKPVTSVLEWAKAAGKATGIVTTTRVTHATPAAFYAHVPDR 135
Query: 204 EWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNV 239
WE EDIA QLI +PG ++V
Sbjct: 136 NWE---------------EDIAEQLIEEAPGRGIDV 156
>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues.
Length = 419
Score = 159 bits (405), Expect = 1e-44
Identities = 70/174 (40%), Positives = 97/174 (55%), Gaps = 22/174 (12%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAYL GVK G +GV V ++ +WA+ KSTGLVTTTR+THA
Sbjct: 64 TAYLCGVKTYNGAIGVD-----------AATGKEVPSVLEWAKKAGKSTGLVTTTRITHA 112
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPAA YAH A+R+W +D + L+ C DIA QLI N+++V++GGGR+ F P
Sbjct: 113 TPAATYAHVASRKWYNDADIPAEALENG-CGDIARQLIN----NRIDVLLGGGRSYFAPT 167
Query: 361 FAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYLL 414
D EG G R+D R+L++ WK YV ++T+L+ V + + LL
Sbjct: 168 GTADPEGQRGTRRDGRNLIEEWKAA------GYQYVWDRTELLAVGANKVDPLL 215
Score = 126 bits (317), Expect = 3e-32
Identities = 77/229 (33%), Positives = 105/229 (45%), Gaps = 59/229 (25%)
Query: 31 RNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKDCDKSTGLVTTT 90
+NVILF+GDGM ++TITAARI GQ G GEE L+F+ FP+ LSK +
Sbjct: 1 KNVILFIGDGMGVSTITAARILKGQAGGKLGEETLLAFDQFPTGALSKTYN--------- 51
Query: 91 RVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGL-SVRSTLGVSG 149
D V D A Y G+ + +GV
Sbjct: 52 --------------------PDYQV----------TDSAATATAYLCGVKTYNGAIGVD- 80
Query: 150 LVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANREWESDK 209
V ++ +WA+ KSTGLVTTTR+THATPAA YAH A+R+W +D
Sbjct: 81 ----------AATGKEVPSVLEWAKKAGKSTGLVTTTRITHATPAATYAHVASRKWYNDA 130
Query: 210 HVLKAKLDPRECEDIASQLITRSPGNKLNVTTAYLSGVKANYGTLGVSG 258
+ L+ C DIA QLI N+++V L G ++ + G +
Sbjct: 131 DIPAEALENG-CGDIARQLIN----NRIDVL---LGGGRSYFAPTGTAD 171
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase.
Length = 421
Score = 146 bits (371), Expect = 9e-40
Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 22/175 (12%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAYL GVK G +GV V ++ + A+ KSTGLVTTTR+THA
Sbjct: 64 TAYLCGVKTYNGAIGVD------------THGKEVPSVLEAAKKAGKSTGLVTTTRITHA 111
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPAA YAH NR+W D + + LD C+DIA QLI+ K++V++GGGR F P
Sbjct: 112 TPAATYAHVTNRKWYGDIAMPASALDEG-CKDIAHQLISNRH--KIDVLLGGGRKYFFPT 168
Query: 361 FAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTS-DTEYLL 414
D G G R D R+L+ WK + YV ++T+L+K S LL
Sbjct: 169 GTPDPYGQRGTRLDGRNLIQEWKHAGYQ------YVWDRTELLKAKDSPSVTPLL 217
Score = 125 bits (316), Expect = 4e-32
Identities = 75/201 (37%), Positives = 94/201 (46%), Gaps = 54/201 (26%)
Query: 30 ARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKDCDKSTGLVTT 89
A+NVILF+GDGM ++TITAARI GQ KG G E L+ + FP GLSK
Sbjct: 1 AKNVILFIGDGMGVSTITAARILKGQAKGKLGPET-LAMDRFPLVGLSK----------- 48
Query: 90 TRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGL-SVRSTLGVS 148
T+ DK V D A Y G+ + +GV
Sbjct: 49 ---TYNV---------------DKQV----------TDSAATATAYLCGVKTYNGAIGVD 80
Query: 149 GLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANREWESD 208
V ++ + A+ KSTGLVTTTR+THATPAA YAH NR+W D
Sbjct: 81 ------------THGKEVPSVLEAAKKAGKSTGLVTTTRITHATPAATYAHVTNRKWYGD 128
Query: 209 KHVLKAKLDPRECEDIASQLI 229
+ + LD C+DIA QLI
Sbjct: 129 IAMPASALDEG-CKDIAHQLI 148
>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and
metabolism].
Length = 482
Score = 105 bits (263), Expect = 1e-24
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 41/176 (23%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TA+ +GVK G +GV N TI + A++ K+TGLVTTTR+THA
Sbjct: 121 TAFATGVKTYNGAIGVDP-----------NGKPL-KTILELAKEAGKATGLVTTTRITHA 168
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPG---NKLNVIMGGGRANF 357
TPAA AH +R+ E +IA+Q I +K++V++GGGR F
Sbjct: 169 TPAAFAAHVTSRDDED---------------EIATQQICPGNAGRNDKVDVLLGGGRKYF 213
Query: 358 LPEFAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYL 413
LP+ G+R D RDL ++ + YV + +L V+ D + L
Sbjct: 214 LPKAT-----AGGRRDDGRDL------IEEAKAAGYQYVETRAELNAVSNQDDKLL 258
Score = 99.0 bits (247), Expect = 2e-22
Identities = 56/185 (30%), Positives = 73/185 (39%), Gaps = 52/185 (28%)
Query: 24 KLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKDCDKS 83
+ KA+NVIL +GDGM +T+TAAR Y G G L T S
Sbjct: 53 AASAGKAKNVILLIGDGMGPSTVTAARSYKGGPNGPFKGIDTLPDTGLIGT---YSTHSS 109
Query: 84 TGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGLSVRS 143
VT + AA A TA A + Y+
Sbjct: 110 DSNVTDS-------AA--AATA----------------------FATGVKTYN------G 132
Query: 144 TLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANR 203
+GV N TI + A++ K+TGLVTTTR+THATPAA AH +R
Sbjct: 133 AIGVDP-----------NGKPL-KTILELAKEAGKATGLVTTTRITHATPAAFAAHVTSR 180
Query: 204 EWESD 208
+ E +
Sbjct: 181 DDEDE 185
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 54.7 bits (132), Expect = 4e-08
Identities = 41/134 (30%), Positives = 53/134 (39%), Gaps = 47/134 (35%)
Query: 21 LERKLNEKKARNVILFLGDGMSLATITAARIY----DGQQKG-----HSGEEAQLSFENF 71
L L+ K A+NVIL +GDGM + ITAAR Y G KG +G+ +
Sbjct: 60 LRDSLSNKPAKNVILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKK 119
Query: 72 P----------------STG----------------------LSKDCDKSTGLVTTTRVT 93
STG L+K K+TG V+T +
Sbjct: 120 TGKPDYVTDSAASATAWSTGVKTYNGALGVDIHGKDHPTLLELAKAAGKATGNVSTAELQ 179
Query: 94 HATPAALYAHTANR 107
ATPAAL AH +R
Sbjct: 180 DATPAALVAHVTSR 193
Score = 43.9 bits (104), Expect = 1e-04
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TA+ +GVK G LGV + D H T+ + A+ K+TG V+T + A
Sbjct: 134 TAWSTGVKTYNGALGVD--IHGKD---------H-PTLLELAKAAGKATGNVSTAELQDA 181
Query: 301 TPAALYAHTANR 312
TPAAL AH +R
Sbjct: 182 TPAALVAHVTSR 193
Score = 38.5 bits (90), Expect = 0.006
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 167 DTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANR 203
T+ + A+ K+TG V+T + ATPAAL AH +R
Sbjct: 157 PTLLELAKAAGKATGNVSTAELQDATPAALVAHVTSR 193
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic
enzyme. Malic enzyme (ME), a member of the amino acid
dehydrogenase (DH)-like domain family, catalyzes the
oxidative decarboxylation of L-malate to pyruvate in
the presence of cations (typically Mg++ or Mn++) with
the concomitant reduction of cofactor NAD+ or NADP+.
ME has been found in all organisms and plays important
roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate
to produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. Amino acid
DH-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 254
Score = 30.3 bits (68), Expect = 1.5
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 16 ALKGLLE-RKLNEKKARNV-ILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPS 73
A+ GLL K+ +KK +LF G G + I + ++G S EEA
Sbjct: 8 AVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR 67
Query: 74 TGLSKDCDKSTGLVTTTRVTHATP 97
GL K T A P
Sbjct: 68 KGLLVKNRKETCPNEYHLARFANP 91
>gnl|CDD|182121 PRK09863, PRK09863, putative frv operon regulatory protein;
Provisional.
Length = 584
Score = 29.4 bits (66), Expect = 4.3
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 14 DSALKGL-LERKLNEKKARNV-ILFLGDGMSLATITAARIYDGQQKGH 59
DS L L L + V IL L D S+ATI I +QK
Sbjct: 331 DSDLIALYFACALERHQNERVPILLLADQNSIATINQLII---EQKVL 375
>gnl|CDD|221415 pfam12083, DUF3560, Domain of unknown function (DUF3560). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 120
amino acids in length. This domain has a conserved GHHSE
sequence motif.
Length = 127
Score = 27.7 bits (62), Expect = 5.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 367 GHHGKRKDRRDLVDIWKQVKLRQGKSIA 394
GHH +R+ RRD+ I GK++
Sbjct: 48 GHHSERRHRRDIERIHN----TMGKAVE 71
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase
inhibitor.
Length = 539
Score = 28.1 bits (62), Expect = 9.1
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 18 KGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLS 77
+G+ + +N + + I+ +GDGM IT R G ++ A + +F + G++
Sbjct: 261 RGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHFIAKGIT 320
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.384
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,973,532
Number of extensions: 1819303
Number of successful extensions: 1396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 27
Length of query: 414
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 315
Effective length of database: 6,546,556
Effective search space: 2062165140
Effective search space used: 2062165140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)