RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2455
(414 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 213 bits (543), Expect = 2e-64
Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAYL+GVK N G +G+ R +C +ES +IA W Q+ +STG+VT+TRVTHA
Sbjct: 91 TAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHA 150
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPA YAH A+R+WE+D V+ + DP C+DIA QL+ R PG VIMGGGR F PE
Sbjct: 151 TPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPE 210
Query: 361 FAMDDE-GHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYLL 414
A+D E G G+R+D + L+ W K QG + +YV N+ DL+ V+ ++T+YL+
Sbjct: 211 EALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLM 265
Score = 193 bits (493), Expect = 4e-57
Identities = 85/237 (35%), Positives = 112/237 (47%), Gaps = 43/237 (18%)
Query: 5 DSIFWYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEA 64
D +W + AL L KL EK+A+NVI FLGDGMSL+T+TAARIY G G E
Sbjct: 3 DKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFERE- 61
Query: 65 QLSFENFPSTGLSKDCDKSTGLVTTTRVTHATP--AALYAHTANREWESDKHVLKAKLDP 122
++S+E F L T AA + TA
Sbjct: 62 KISWEEFDFAA----------LSKTYNTDKQVTDSAA--SATA----------------- 92
Query: 123 RECEDIACRFRLYSYGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGL 182
+ G +G+ R +C +ES +IA W Q+ +STG+
Sbjct: 93 -----YLTGVKTN-QG-----VIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGV 141
Query: 183 VTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNV 239
VT+TRVTHATPA YAH A+R+WE+D V+ + DP C+DIA QL+ R PG V
Sbjct: 142 VTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKV 198
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 181 bits (460), Expect = 2e-52
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAYL GVK N+ T+G+S N C N V ++ + A+ KS G+VTTTRV HA
Sbjct: 97 TAYLCGVKGNFQTIGLSAAARFNQCNT--TRGNEVISVMNRAKKAGKSVGVVTTTRVQHA 154
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
+PA YAHT NR W SD V A C+DIA+QLI+ ++VI+GGGR
Sbjct: 155 SPAGTYAHTVNRNWYSDADV-PASARQEGCQDIATQLIS---NMDIDVILGGGRKYMFRM 210
Query: 361 FAMD-----DEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNT-SDTEYLL 414
D D G R D ++LV W + + YV N+T+LM+ + +L+
Sbjct: 211 GTPDPEYPDDYSQGGTRLDGKNLVQEWLA----KRQGARYVWNRTELMQASLDPSVTHLM 266
Score = 180 bits (459), Expect = 3e-52
Identities = 80/282 (28%), Positives = 116/282 (41%), Gaps = 51/282 (18%)
Query: 5 DSIFWYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEA 64
+ FW + AL + + + A+N+I+FLGDGM ++T+TAARI GQ+K G E
Sbjct: 8 NPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEI 67
Query: 65 QLSFENFPSTGLSKDCDKSTGLVTTTRVTHATP--AALYAHTANREWESDKHVLKAKLDP 122
L+ + FP L T V P A TA
Sbjct: 68 PLAMDRFPYVAL----------SKTYNVDKHVPDSGA--TATA----------------- 98
Query: 123 RECEDIACRFRLYSYGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGL 182
C + + T+G+S N C N V ++ + A+ KS G+
Sbjct: 99 -----YLCGVKGN-FQ-----TIGLSAAARFNQCNT--TRGNEVISVMNRAKKAGKSVGV 145
Query: 183 VTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVTTA 242
VTTTRV HA+PA YAHT NR W SD V A C+DIA+QLI+ ++V
Sbjct: 146 VTTTRVQHASPAGTYAHTVNRNWYSDADV-PASARQEGCQDIATQLIS---NMDIDV--- 198
Query: 243 YLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQD 284
L G + +G +D + + + +W
Sbjct: 199 ILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAK 240
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 164 bits (418), Expect = 1e-46
Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 26/175 (14%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TA+ +GVK G LGV TI + A+ +TG V+T + A
Sbjct: 107 TAWSTGVKTYNGALGVDI------------HEKDHPTILEMAKAAGLATGNVSTAELQDA 154
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPAAL AH +R+ + + + + + +V +GGG F
Sbjct: 155 TPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAET 214
Query: 361 FAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVN-TSDTEYLL 414
+ L + + + V++ L V + + LL
Sbjct: 215 AT-------AGEWQGKTLREQAQA------RGYQLVSDAASLNSVTEANQQKPLL 256
Score = 151 bits (383), Expect = 1e-41
Identities = 49/234 (20%), Positives = 75/234 (32%), Gaps = 55/234 (23%)
Query: 9 WYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGH-SGEEAQLS 67
+ L L++K A+N+IL +GDGM + ITAAR Y G G +A
Sbjct: 21 GARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL 80
Query: 68 FENFPSTGLSKDCDKSTGLVTTTRVTHATP--AALYAHTANREWESDKHVLKAKLDPREC 125
+ L+K T AA + TA
Sbjct: 81 TGQYTHYALNK----------KTGKPDYVTDSAA--SATA-------------------- 108
Query: 126 EDIACRFRLYSYGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTT 185
+ + Y G LGV TI + A+ +TG V+T
Sbjct: 109 --WSTGVKTY-NG-----ALGVDI------------HEKDHPTILEMAKAAGLATGNVST 148
Query: 186 TRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNV 239
+ ATPAAL AH +R+ + + + + + +V
Sbjct: 149 AELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADV 202
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 157 bits (398), Expect = 2e-43
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 51/182 (28%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
T +G+ ++ +G+ + NHV+T+ + A+ K+TGLV+ TR+THA
Sbjct: 70 TMLATGIYSSSEVIGIDS------------QGNHVETVLEKAKKAGKATGLVSDTRLTHA 117
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPA+ AH +R E+ IAS ++ +V++ GG +++P+
Sbjct: 118 TPASFAAHQPHRSLEN---------------QIASDML----ATGADVMLSGGLRHWIPK 158
Query: 361 FAMDDEGHH--------------GKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVN 406
D + KRKD R+L+ ++ N+ L
Sbjct: 159 STNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEK------DGYQLAFNRNMLDDAK 212
Query: 407 TS 408
Sbjct: 213 GD 214
Score = 143 bits (361), Expect = 4e-38
Identities = 43/213 (20%), Positives = 73/213 (34%), Gaps = 70/213 (32%)
Query: 29 KARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKDCDKSTGLVT 88
+ +NVIL +GDGM + Y Q + + + G+ G
Sbjct: 2 EIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGV-------IGSSL 54
Query: 89 TTRVTHATP--AALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGLSVRSTLG 146
T A + T +A
Sbjct: 55 THPEDAIVVDSAC--SATM----------------------LAT---------------- 74
Query: 147 VSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANREWE 206
G+ + ++ + ++ NHV+T+ + A+ K+TGLV+ TR+THATPA+ AH +R E
Sbjct: 75 --GIYSSSEVIGIDSQGNHVETVLEKAKKAGKATGLVSDTRLTHATPASFAAHQPHRSLE 132
Query: 207 SDKHVLKAKLDPRECEDIASQLITRSPGNKLNV 239
+ IAS ++ +V
Sbjct: 133 N---------------QIASDML----ATGADV 146
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 154 bits (392), Expect = 1e-42
Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 43/168 (25%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TA+ SGVK G +G + VDT+ + A +TGL+TTT THA
Sbjct: 120 TAFASGVKTYNGAIGG--------VQTSGGGFQRVDTVLERASAQGYATGLITTTEATHA 171
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPAA AH +R + +IA Q I + +VI+GG R +F
Sbjct: 172 TPAAFAAHVEDRGNQ---------------TEIARQYI---EETQPDVILGGQRRDFEA- 212
Query: 361 FAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTS 408
+ LVD + +L V+
Sbjct: 213 ----------DASNGGTLVDAARD------NGYTIAETAAELDAVDDP 244
Score = 149 bits (378), Expect = 1e-40
Identities = 47/239 (19%), Positives = 67/239 (28%), Gaps = 78/239 (32%)
Query: 8 FWYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGH-------S 60
S + + A N I ++ DGM I+AAR + + S
Sbjct: 25 VAGGAVASQFQTTARAQATASPAANAIAYIVDGMGQTQISAARYLNAYKTAPERFPLNVS 84
Query: 61 GEEAQLSFENFPSTGLSKDCDKSTGLVTTTRVTHATPAALY------AHTANREWESDKH 114
E F+ F S G T A TA
Sbjct: 85 PAETPTGFDAFSSRGSMT--------------TFPDDPYETTTDSAAAATA--------- 121
Query: 115 VLKAKLDPRECEDIACRFRLYSYGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQ 174
A + Y+ + + VDT+ + A
Sbjct: 122 -------------FASGVKTYNGAIGG--------------VQTSGGGFQRVDTVLERAS 154
Query: 175 DCDKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSP 233
+TGL+TTT THATPAA AH +R + +IA Q I +
Sbjct: 155 AQGYATGLITTTEATHATPAAFAAHVEDRGNQ---------------TEIARQYIEETQ 198
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 150 bits (381), Expect = 7e-42
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 51/174 (29%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TA+ G+K +GV+ ++S V +I + A + TG+V T+ +T A
Sbjct: 89 TAFSCGIKTYNAAIGVA------------DDSTAVKSIVEIAALNNIKTGVVATSSITDA 136
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPA+ YAH NR E E+IA + + L+ GGG F
Sbjct: 137 TPASFYAHALNRGLE---------------EEIAMDMT----ESDLDFFAGGGLNYF--- 174
Query: 361 FAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYLL 414
KRKD++D++ I K + + N T L ++ + +
Sbjct: 175 ---------TKRKDKKDVLAILKGNQ--------FTINTTALTDFSSIASNRKM 211
Score = 133 bits (338), Expect = 1e-35
Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 82/227 (36%)
Query: 15 SALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPST 74
L++ + K +NVIL + DG L+ I++ + ++ F +
Sbjct: 19 KTTSVLVKNEPQLKTPKNVILLISDGAGLSQISSTFYFKSGT---------PNYTQFKNI 69
Query: 75 GLSKDCDKSTGLVTTTRVTHATP--AALYAHTANREWESDKHVLKAKLDPRECEDIACRF 132
GL + T+ A+ TA +C
Sbjct: 70 GL----------IKTSSSREDVTDSAS--GATA----------------------FSCGI 95
Query: 133 RLYSYGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHAT 192
+ Y +GV+ ++S V +I + A + TG+V T+ +T AT
Sbjct: 96 KTY-NA-----AIGVA------------DDSTAVKSIVEIAALNNIKTGVVATSSITDAT 137
Query: 193 PAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNV 239
PA+ YAH NR E E+IA + + L+
Sbjct: 138 PASFYAHALNRGLE---------------EEIAMDMT----ESDLDF 165
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 138 bits (349), Expect = 5e-37
Identities = 40/185 (21%), Positives = 59/185 (31%), Gaps = 60/185 (32%)
Query: 230 TRSPGNKLNVT------TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQ 283
T VT TA +G K+ G + V + TI A+
Sbjct: 46 TYPARESGYVTDSAASATALATGFKSYNGAIAVDI------------NKRPLTTIMQMAK 93
Query: 284 DCDKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPG 343
STG+ T +V HATPAA H +R+ E IA+ ++
Sbjct: 94 ARGMSTGVAVTAQVNHATPAAFLTHNESRKNY---------------EAIAADML----K 134
Query: 344 NKLNVIMGGGRANFLPEFAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLM 403
+ +VI+GGGR F LV + K ++T L
Sbjct: 135 SDADVILGGGRKYFS-----------------EALVSQFSA------KGYQHITELAQLD 171
Query: 404 KVNTS 408
+
Sbjct: 172 SITQP 176
Score = 126 bits (319), Expect = 8e-33
Identities = 40/206 (19%), Positives = 62/206 (30%), Gaps = 74/206 (35%)
Query: 32 NVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKDCDKSTGLVTTTR 91
+I+ +GDGM A +A R + E Q F+ G+ +T
Sbjct: 2 GMIIMVGDGMGPAYTSAYRYFQDNPDT--EEIEQTVFDRLL-----------VGMASTYP 48
Query: 92 VTHATP----AALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGLSVRSTLGV 147
+ AA + TA +A
Sbjct: 49 ARESGYVTDSAA--SATA----------------------LAT----------------- 67
Query: 148 SGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANREWES 207
G + N A+ + TI A+ STG+ T +V HATPAA H +R+
Sbjct: 68 -GFKSYNGAIAVDINKRPLTTIMQMAKARGMSTGVAVTAQVNHATPAAFLTHNESRKNY- 125
Query: 208 DKHVLKAKLDPRECEDIASQLITRSP 233
E IA+ ++
Sbjct: 126 --------------EAIAADMLKSDA 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 8e-05
Identities = 69/455 (15%), Positives = 123/455 (27%), Gaps = 142/455 (31%)
Query: 21 LERKLNE-KKARNVILF--LGDGMSLATITAARIYDGQQKGHSGEEAQLSFENF-PSTGL 76
L + L E + A+NV++ LG G + + Y Q K + F+ F +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--------MDFKIFWLNLK- 190
Query: 77 SKDCDKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYS 136
+C+ ++ L + + W S I R
Sbjct: 191 --NCNSPETVLEML-------QKLL-YQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLL 238
Query: 137 YGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQD--CDKSTGLVTT--TRVTHAT 192
+ L LV N A + A + C K L+TT +VT
Sbjct: 239 KSKPYENCL----LVLLNVQNA-----KAWN-----AFNLSC-KI--LLTTRFKQVTDFL 281
Query: 193 PAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVTTAYLSGVKANYG 252
AA H S H L P E + + L+ L
Sbjct: 282 SAATTTH------ISLDHHSMT-LTPDEVKSLLL--------KYLDCRPQDLPREVLTTN 326
Query: 253 TLGVSGLVTRNDCEAMRNESNHVDTIADWAQ-DCDKSTGLVTTTRVTHATPA---ALY-- 306
+S + E++R+ D W +CDK T ++ ++ + PA ++
Sbjct: 327 PRRLSIIA-----ESIRDGLATWDN---WKHVNCDKLTTIIESS-LNVLEPAEYRKMFDR 377
Query: 307 -----------AHTANREWESDKHVLKAKLDPRECEDIASQLITRS-----PGNKLNVIM 350
+ W + + + ++L S P I
Sbjct: 378 LSVFPPSAHIPTILLSLIWF--------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 351 GG-------------------GRANFLPEFAMDDE-------------GHHGKRKDRRDL 378
N F DD GHH K + +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 379 VDI---------WKQVKLRQ-GKSIAYVTNQTDLM 403
+ + + + K+R + + + +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Score = 44.1 bits (103), Expect = 9e-05
Identities = 64/436 (14%), Positives = 125/436 (28%), Gaps = 116/436 (26%)
Query: 4 SDSIFWYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEE 63
SD + +++ L R L K N +L L + + A+ ++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWN---------- 260
Query: 64 AQLSFENFPSTGLSKDCDKSTGLVTT--TRVTHATPAALYAHTANREWESDKHVLKAKLD 121
+F C K L+TT +VT AA H S H L
Sbjct: 261 ---AFNL--------SC-KI--LLTTRFKQVTDFLSAATTTH------ISLDHHSMT-LT 299
Query: 122 PRECEDIACRFRLYSYGLSV----RSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQ-DC 176
P E + + Y R L + E++R+ D W +C
Sbjct: 300 PDEVKSL---LLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNC 352
Query: 177 DKSTGLVTTTRVTHATPA---ALY-------------AHTANREWESDKHVLKAKLDPRE 220
DK T ++ ++ + PA ++ + W + +
Sbjct: 353 DKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF--------DVIKSD 403
Query: 221 CEDIASQLITRSPGNKLNVTTAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIAD 280
+ ++L S K + T+ + + + + H +I D
Sbjct: 404 VMVVVNKLHKYSLVEK-----------QPKESTISIPSIYLELKVKLENEYALH-RSIVD 451
Query: 281 --WAQDCDKSTGLVTTTR--------VTHATPAALYAHTAN-REWESDKHVLKAKLDPRE 329
S L+ H R D L+ K+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---- 507
Query: 330 CEDIASQLITRSPGNKLNVIMGGGRANFLPEFAMDDEGHHGKRKDRRDLVDIWKQVKLRQ 389
+ G+ LN + + F + D++ + + + ++D L +
Sbjct: 508 ---RHDSTAWNASGSILNTL---QQLKFYKPYICDNDPKYERLVN--AILDF-----LPK 554
Query: 390 GKSIAYVTNQTDLMKV 405
+ + TDL+++
Sbjct: 555 IEENLICSKYTDLLRI 570
Score = 33.7 bits (76), Expect = 0.14
Identities = 66/420 (15%), Positives = 112/420 (26%), Gaps = 118/420 (28%)
Query: 2 FVSDSIFWYEQGDSALKGLLERK-----LNEKKARNVILFLGDGMSLATITAARIYDGQQ 56
FV + Q D K +L ++ + K A + L L +
Sbjct: 29 FVDNFDCKDVQ-DM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTL-------------LS 73
Query: 57 KGHSGEEAQLSFENFPSTGLSKDCDKSTGLVTTTRVTHATPAA---LYAHTANREWESDK 113
K + F L + L++ + P+ +Y +R + +D
Sbjct: 74 KQEEM------VQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDN 123
Query: 114 HVLKAKLD-PRECEDIACRFRLYSYGLSVRSTLGVSGL-------VTRNDCEAMRNESNH 165
V AK + R + R L L + + G+ V + C + + +
Sbjct: 124 QVF-AKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 166 VDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIA 225
I W + + L H KL +
Sbjct: 181 DFKIF-WL-----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 226 SQLITRSPGNKLNVTTAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQD- 284
+L+ P L LV N A + A +
Sbjct: 235 RRLLKSKPYEN----------------CL----LVLLNVQNA-----KAWN-----AFNL 264
Query: 285 -CDKSTGLVTT--TRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRS 341
C K L+TT +VT AA H S H L P E + + + +
Sbjct: 265 SC-KI--LLTTRFKQVTDFLSAATTTH------ISLDHHSMT-LTPDEVKSLLLKYLDCR 314
Query: 342 PGNKLNVIMGGGRANFLPEFAMDDEGHH-------GKR-KDRRDLVDIWKQVKLRQGKSI 393
P + LP + + + +D D WK V + +I
Sbjct: 315 PQD-------------LPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Score = 30.2 bits (67), Expect = 1.4
Identities = 25/230 (10%), Positives = 70/230 (30%), Gaps = 51/230 (22%)
Query: 212 LKAKLDPRECEDIASQLITR--------SPGNKLNVTTAYLSGVKANYGTLGVSGLVTRN 263
D ++ +D+ ++++ S T L + V V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQKFVEEV 86
Query: 264 DCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAA---LYAHTANREWESDKHV 320
N+ + L++ + P+ +Y +R + +D V
Sbjct: 87 L------RINY-----KF---------LMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQV 125
Query: 321 LKAKLD-PRE--CEDIASQLITRSPGNKLNVI-MGG-GR--------ANFLPEFAMDDEG 367
AK + R + L+ P + + + G G+ ++ + MD +
Sbjct: 126 F-AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 368 H---HGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYLL 414
++++ +++ + + ++ + +K+ + L
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.011
Identities = 73/475 (15%), Positives = 131/475 (27%), Gaps = 153/475 (32%)
Query: 65 QLSFENF------PSTGLSKDCDKST--GLVT-----TTRVTHATPAALYAH---TANRE 108
QL E F P+ G + D + +T LV + + + + E
Sbjct: 32 QLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 109 WES------DKHVLKAKLDPRECEDIACRFR-LYSYGLSVRSTLGV-------SGLVTRN 154
+E+ D H L AKL + + +Y ++ R S L
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALF--- 146
Query: 155 DCEAMRNESNHV---------------------DTIADWAQD-CDKSTGLVTTTRVTHAT 192
A+ + + T D S ++ T
Sbjct: 147 --RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 193 PAALYAHTAN-REWESDKHVLKAKLDPRECEDIASQLITRS-PGNKLN-----VTTAYLS 245
++ N EW L+ + + + + S I S P + V TA L
Sbjct: 205 AEKVFTQGLNILEW------LENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTAKLL 256
Query: 246 GV------KANYGTLGVS-GLVT------RNDCEAMRNESNHVDTIADW----AQDCDKS 288
G G G S GLVT + E+ T+ + + +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 289 TGLVTTTR----------------VTHATPAALYAH--TANREWESDKHV---------- 320
T L + +++ T + + N + K V
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 321 ------------LKAKLDPRECEDIASQLITRSPGN--KLNVIMGGGRANFLPEFA---- 362
L L + Q +R P + KL FLP +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLKFSN-----RFLPVASPFHS 429
Query: 363 --MDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIA-YVT-NQTDLMKVNTSDTEYL 413
+ + ++ V + ++ I Y T + +DL ++ S +E +
Sbjct: 430 HLLVPASDLINKDLVKNNVS-FNAKDIQ----IPVYDTFDGSDLRVLSGSISERI 479
Score = 32.3 bits (73), Expect = 0.33
Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 68/214 (31%)
Query: 127 DIACRFRLYSYGLS----VRS-----TL---GVSGLVTRNDCEAMRNESNHVDTIADWAQ 174
+ A +YG S V + T+ G G R + AM +TI D
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIVDGKL 1701
Query: 175 DCDKSTGLVT--TTRVTHATPAALYAHTANR----------EWESDKHVLKAK-LDPREC 221
+K + +T T + L + T +E LK+K L P +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE----DLKSKGLIPADA 1757
Query: 222 ----------------------EDIASQLITRSPGNKLNVTTAYLSGVKANYGTLGVS-G 258
E + + R G + V ++NYG + ++ G
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 259 LVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLV 292
V + + + + + K TG +
Sbjct: 1816 RVAASFSQ---------EALQYVVERVGKRTGWL 1840
>2o0q_A Hypothetical protein CC0527; PSI, protein structure initiative,
northeast structural genomics consortium, NESG,
structural genomics; 1.80A {Caulobacter vibrioides}
SCOP: d.166.1.7 PDB: 2jqn_A 2o0p_A
Length = 115
Score = 27.2 bits (60), Expect = 4.9
Identities = 7/69 (10%), Positives = 21/69 (30%), Gaps = 16/69 (23%)
Query: 165 HVDTIADWAQDC----------DKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKA 214
+ + A+W D + G + H + TA + + +++
Sbjct: 6 KILSRAEWDAAKAQGRFEGSAVDLADGFI------HLSAGEQAQETAAKWFRGQANLVLL 59
Query: 215 KLDPRECED 223
++ +
Sbjct: 60 AVEAEPLGE 68
Score = 27.2 bits (60), Expect = 4.9
Identities = 7/69 (10%), Positives = 21/69 (30%), Gaps = 16/69 (23%)
Query: 274 HVDTIADWAQDC----------DKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKA 323
+ + A+W D + G + H + TA + + +++
Sbjct: 6 KILSRAEWDAAKAQGRFEGSAVDLADGFI------HLSAGEQAQETAAKWFRGQANLVLL 59
Query: 324 KLDPRECED 332
++ +
Sbjct: 60 AVEAEPLGE 68
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint
center structural genomics, JCSG, protein structure
initiative; 2.54A {Pseudomonas syringae PV}
Length = 262
Score = 27.1 bits (59), Expect = 9.8
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 244 LSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPA 303
+ K +G + R +R E NH D +W D + + RV A
Sbjct: 75 KNLTKTRFGRHPGEDMARRWLMRNIRVELNHADYWVNWCAAHDVTLEDLHDQRVAPELHA 134
Query: 304 --ALYAHTANREW 314
T++ +
Sbjct: 135 LSHWCWQTSSSDS 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.384
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,050,384
Number of extensions: 340276
Number of successful extensions: 757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 38
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)