RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2455
(414 letters)
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 165 bits (419), Expect = 5e-47
Identities = 87/236 (36%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 5 DSIFWYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEA 64
D +W + AL L KL EK+A+NVI FLGDGMSL+T+TAARIY G G E
Sbjct: 3 DKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFERE- 61
Query: 65 QLSFENFPSTGLSKDCDKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRE 124
++S+E F LSK T +VT + +A TA
Sbjct: 62 KISWEEFDFAALSK------TYNTDKQVTDSAASA----TA------------------- 92
Query: 125 CEDIACRFRLYSYGLSVRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVT 184
+ +G+ R +C +ES +IA W Q+ +STG+VT
Sbjct: 93 ---YLTGVKTNQ------GVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVT 143
Query: 185 TTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVT 240
+TRVTHATPA YAH A+R+WE+D V+ + DP C+DIA QL+ R PG V
Sbjct: 144 STRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVI 199
Score = 159 bits (404), Expect = 6e-45
Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAYL+GVK N G +G+ R +C +ES +IA W Q+ +STG+VT+TRVTHA
Sbjct: 91 TAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHA 150
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLPE 360
TPA YAH A+R+WE+D V+ + DP C+DIA QL+ R PG VIMGGGR F PE
Sbjct: 151 TPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPE 210
Query: 361 FAMDDE-GHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSDTEYLL 414
A+D E G G+R+D + L+ W K QG + +YV N+ DL+ V+ ++T+YL+
Sbjct: 211 EALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLM 265
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 154 bits (391), Expect = 4e-43
Identities = 83/278 (29%), Positives = 118/278 (42%), Gaps = 49/278 (17%)
Query: 5 DSIFWYEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEA 64
+ FW + AL + + + A+N+I+FLGDGM ++T+TAARI GQ+K G E
Sbjct: 8 NPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEI 67
Query: 65 QLSFENFPSTGLSKDCDKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRE 124
L+ + FP LSK T+ DKHV
Sbjct: 68 PLAMDRFPYVALSK--------------TYN---------------VDKHV--------- 89
Query: 125 CEDIACRFRLYSYGLSVRS-TLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLV 183
D Y G+ T+G+S N C R N V ++ + A+ KS G+V
Sbjct: 90 -PDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRG--NEVISVMNRAKKAGKSVGVV 146
Query: 184 TTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVTTAY 243
TTTRV HA+PA YAHT NR W SD V A C+DIA+QLI+ +
Sbjct: 147 TTTRVQHASPAGTYAHTVNRNWYSDADV-PASARQEGCQDIATQLISNMDID------VI 199
Query: 244 LSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADW 281
L G + +G +D + + + +W
Sbjct: 200 LGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEW 237
Score = 124 bits (313), Expect = 3e-32
Identities = 69/180 (38%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 241 TAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHA 300
TAYL GVK N+ T+G+S N C R N V ++ + A+ KS G+VTTTRV HA
Sbjct: 97 TAYLCGVKGNFQTIGLSAAARFNQCNTTRG--NEVISVMNRAKKAGKSVGVVTTTRVQHA 154
Query: 301 TPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLP- 359
+PA YAHT NR W SD V A C+DIA+QLI+ ++VI+GGGR
Sbjct: 155 SPAGTYAHTVNRNWYSDADV-PASARQEGCQDIATQLISNM---DIDVILGGGRKYMFRM 210
Query: 360 ----EFAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKVNTSD-TEYLL 414
DD G R D ++LV W + + YV N+T+LM+ + +L+
Sbjct: 211 GTPDPEYPDDYSQGGTRLDGKNLVQEWLA----KRQGARYVWNRTELMQASLDPSVTHLM 266
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 121 bits (304), Expect = 4e-31
Identities = 49/228 (21%), Positives = 71/228 (31%), Gaps = 53/228 (23%)
Query: 21 LERKLNEKKARNVILFLGDGMSLATITAARIYDGQQKGHSGEEAQLSFENFPSTGLSKDC 80
L L++K A+N+IL +GDGM + ITAAR Y G + P TG
Sbjct: 33 LRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF-----FKGIDALPLTGQY--- 84
Query: 81 DKSTGLVTTTRVTHATPAALYAHTANREWESDKHVLKAKLDPRECEDIACRFRLYSYGLS 140
L T + + TA +
Sbjct: 85 -THYALNKKTGKPDYVTDSAASATA----------------------WST---------- 111
Query: 141 VRSTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTHATPAALYAHT 200
G+ T N + TI + A+ +TG V+T + ATPAAL AH
Sbjct: 112 --------GVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHV 163
Query: 201 ANREWESDKHVLKA----KLDPRECEDIASQLITRSPGNKLNVTTAYL 244
+R+ + L+ I QL+ L
Sbjct: 164 TSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTF 211
Score = 98.3 bits (244), Expect = 4e-23
Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 26/176 (14%)
Query: 240 TTAYLSGVKANYGTLGVSGLVTRNDCEAMRNESNHVDTIADWAQDCDKSTGLVTTTRVTH 299
TA+ +GVK G LGV TI + A+ +TG V+T +
Sbjct: 106 ATAWSTGVKTYNGALGVD------------IHEKDHPTILEMAKAAGLATGNVSTAELQD 153
Query: 300 ATPAALYAHTANREWESDKHVLKAKLDPRECEDIASQLITRSPGNKLNVIMGGGRANFLP 359
ATPAAL AH +R+ + + + + + +V +GGG F
Sbjct: 154 ATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAE 213
Query: 360 EFAMDDEGHHGKRKDRRDLVDIWKQVKLRQGKSIAYVTNQTDLMKV-NTSDTEYLL 414
+ L + + + V++ L V + + LL
Sbjct: 214 TAT-------AGEWQGKTLREQAQA------RGYQLVSDAASLNSVTEANQQKPLL 256
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 26.2 bits (58), Expect = 1.9
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 1 MFVSDSIFWYEQGDSALKGLLERKLNEKKARNVILFLGDGM 41
+ V + L+G L +E + + ++ +G
Sbjct: 34 ITVPKDWGYNRITLQQLEGYLNTLADEGR----LKYIANGS 70
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato
(Lycopersicon esculentum) [TaxId: 4081]}
Length = 116
Score = 26.4 bits (58), Expect = 3.6
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 215 KLDPRECEDIASQLITRSPGNKLN-VTTAYLSGVKA-NY----GTL---GVSGLVTRNDC 265
K REC ++ + RS G+ LN + SG K NY G G S N C
Sbjct: 1 KACTRECGNLGFGICPRSEGSPLNPICINCCSGYKGCNYYNSFGKFICEGESDPKRPNAC 60
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1,
COMTD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 219
Score = 26.7 bits (58), Expect = 5.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 1 MFVSDSIFWY------EQGDSALKGLLERKLNEKKARN-----VILFLGDGMSLAT 45
+ + W +GD A + + R LNE+ R+ +L LGDG++LA
Sbjct: 164 ILAVLRVLWRGKVLQPPKGDVAAECV--RNLNERIRRDVRVYISLLPLGDGLTLAF 217
>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 451
Score = 26.7 bits (59), Expect = 6.1
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 1 MFVSDSIFW--YEQGDSALKGLLERKLNEKKARNVILFLGDGMSLATITAAR 50
+F+ I+ +E+G+ L E + E+ + I + A R
Sbjct: 140 LFLDGPIYVPTFERGELRLIHPREFRKGEEDCIHYIYEFPRNFKVLDFEAPR 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.384
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,432,449
Number of extensions: 60673
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 16
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)