BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2457
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C C GYTG D ++ C NPC +A C D+ G+ + C C+PGY G
Sbjct: 30 CQCLQGYTGPRC----EIDVNE-CVSNPCQNDATC---LDQIGEFQ--CICMPGYEG--- 76
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQG 165
+C N ++ +S C N +C + + C CP G+ G
Sbjct: 77 VHCE------------------VNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 66 RFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNY 125
++ D CE +PC KC K G CTCL G+ G R C D
Sbjct: 38 KYKDGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD----- 87
Query: 126 DQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 88 -----NGDCDQFCHEE----------QNSVVCSCARGY 110
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 66 RFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNY 125
++ D CE +PC KC K G CTCL G+ G R C D
Sbjct: 43 KYKDGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD----- 92
Query: 126 DQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 93 -----NGDCDQFCHEE----------QNSVVCSCARGY 115
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 66 RFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNY 125
++ D CE +PC KC K G CTCL G+ G R C D
Sbjct: 38 KYKDGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD----- 87
Query: 126 DQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 88 -----NGDCDQFCHEE----------QNSVVCSCARGY 110
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C C GYTG D ++ C NPC +A C D+ G+ + C C+PGY G
Sbjct: 28 CQCLQGYTGPRC----EIDVNE-CVSNPCQNDATC---LDQIGEFQ--CICMPGYEG--- 74
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQG 165
+C N ++ +S C N +C + + C CP G+ G
Sbjct: 75 VHCE------------------VNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 25/93 (26%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D CE +PC KC K G CTCL G+ G R C D
Sbjct: 3 DQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD---------- 47
Query: 131 NYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 48 NGDCDQFCHEE----------QNSVVCSCARGY 70
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 67 FDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYD 126
+ D CE +PC KC K G CTCL G+ G R C D
Sbjct: 1 YKDGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD------ 49
Query: 127 QVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 50 ----NGDCDQFCHEE----------QNSVVCSCARGY 72
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 67 FDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSD-AECNY 125
+ D CE +PC KC K G CTCL G+ G R C D +C
Sbjct: 1 YKDGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC-- 53
Query: 126 DQVCNNYNCEKACT 139
DQ C+ C+
Sbjct: 54 DQFCHEEQASVVCS 67
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 25/93 (26%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D CE +PC KC K G CTCL G+ G R C D
Sbjct: 3 DQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD---------- 47
Query: 131 NYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 48 NGDCDQFCHEE----------QNSVVCSCARGY 70
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 25/93 (26%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D CE +PC KC K G CTCL G+ G R C D
Sbjct: 4 DQCETSPCQNQGKC-----KXGLGEYTCTCLEGFEGKNCELFTRKLCSLD---------- 48
Query: 131 NYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + + CSC GY
Sbjct: 49 NGDCDQFCHEE----------QNSVVCSCARGY 71
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 25/93 (26%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D CE +PC KC K G CTCL G+ G R C D
Sbjct: 4 DQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEGKNCELFTRKLCSLD---------- 48
Query: 131 NYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
N +C++ C + +N V CSC GY
Sbjct: 49 NGDCDQFCHEE---------QNSVV-CSCARGY 71
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 26/100 (26%)
Query: 65 RRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECN 124
+++ D CEPNPC C K + C C G+ G C+ DA CN
Sbjct: 43 KQYVDGDQCEPNPCLNGGLC-----KXDINSYECWCQVGFEGK--------NCELDATCN 89
Query: 125 YDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQ 164
N C++ C T + CSC GY+
Sbjct: 90 IK----NGRCKQFCK---------TGADSKVLCSCTTGYR 116
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 26/100 (26%)
Query: 65 RRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECN 124
+++ D CEPNPC C K + C C G+ G C+ DA CN
Sbjct: 43 KQYVDGDQCEPNPCLNGGLC-----KDDINSYECWCQVGFEGK--------NCELDATCN 89
Query: 125 YDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQ 164
N C++ C T + CSC GY+
Sbjct: 90 I----KNGRCKQFCK---------TGADSKVLCSCTTGYR 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,734,046
Number of Sequences: 62578
Number of extensions: 292136
Number of successful extensions: 668
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 109
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)