RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2457
(189 letters)
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 38.9 bits (91), Expect = 2e-04
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 50 CSCPPGYTG-------DPLTQCRRFDPHDLCEPNPCGENAKCQ--PGYDKSGKDRPVCTC 100
C CP G+T + + C PNPC C+ Y VC C
Sbjct: 25 CECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKC 84
Query: 101 LPGYVGD----ALTYCRRGECQSDAECNYDQVCNNYNCE 135
G+ G + C C++ C D V NY+CE
Sbjct: 85 PRGFNGIHCQHNINECEVEPCKNGGICT-DLV-ANYSCE 121
Score = 35.5 bits (82), Expect = 0.003
Identities = 23/104 (22%), Positives = 28/104 (26%), Gaps = 21/104 (20%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D+C+PNPC C C C G+ C S E D+
Sbjct: 1 DICDPNPCENGGICL---PGLADGSFSCECPDGFTDP--------NCSSVVEVASDEEEP 49
Query: 131 NYNCEKACTSQ-CGINAQCTARNHVA-------TCSCPAGYQGD 166
CT C C C CP G+ G
Sbjct: 50 TSAGP--CTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 40.2 bits (94), Expect = 2e-04
Identities = 23/134 (17%), Positives = 34/134 (25%), Gaps = 27/134 (20%)
Query: 41 CNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTC 100
N + + + P C C +C C
Sbjct: 126 MNSEGNTILKTPQNAIFFK--------TCQQAECPGGCRNGGFCNERR--------ICEC 169
Query: 101 LPGYVGDA-LTYCRRGECQSDAECNYDQVCN------NYNCEKA-CTSQCGINAQCTARN 152
G+ G C + C C NC+KA C++ C C
Sbjct: 170 PDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPG 229
Query: 153 HVATCSCPAGYQGD 166
C CP G +G+
Sbjct: 230 ---KCICPPGLEGE 240
Score = 31.4 bits (71), Expect = 0.16
Identities = 31/118 (26%), Positives = 33/118 (27%), Gaps = 45/118 (38%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C CPPG G QC C P PC KC C C GY GD
Sbjct: 231 CICPPGLEG---EQCE----ISKC-PQPCRNGGKCIGKS--------KCKCSKGYQGD-- 272
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKA-CTSQCGINAQCTARNHVATCSCPAGYQGD 166
C K C CG + C N C C G+ G
Sbjct: 273 -----------------------LCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Score = 29.0 bits (65), Expect = 0.85
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 24/86 (27%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDA 108
C C GY GD C +CE CG + C C C G+ G
Sbjct: 262 KCKCSKGYQGD---LCS----KPVCE-PGCGAHGTCHEPN--------KCQCQEGWHGRH 305
Query: 109 LTYCRRGECQSDAECNYDQVCNNYNC 134
C E + ++++
Sbjct: 306 --------CNKRYEASLIGTKHHHHH 323
Score = 27.9 bits (62), Expect = 2.0
Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 98 CTCLPGYVGDALTYCRRGECQSDAECNYDQVCNN----YNCEKA-CTSQCGINAQCTARN 152
CL G A S+ + N C++A C C C R
Sbjct: 107 FPCLGKQDGVAAFEVDVIVMNSEGNT-ILKTPQNAIFFKTCQQAECPGGCRNGGFCNERR 165
Query: 153 HVATCSCPAGYQGD 166
C CP G+ G
Sbjct: 166 ---ICECPDGFHGP 176
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 38.5 bits (90), Expect = 4e-04
Identities = 27/129 (20%), Positives = 37/129 (28%), Gaps = 27/129 (20%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
+C G+ G +C R +C ++ C+ D C C G+ G
Sbjct: 52 KTCMEGWMGP---ECNR----AICRQGCSPKHGSCKLPGD--------CRCQYGWQGLYC 96
Query: 110 TYCRRGECQSDAECNYDQVCN------NYNCEK-----ACTSQCGINAQCTARNHVA-TC 157
C CN C C+K C C+ C
Sbjct: 97 DKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQC 156
Query: 158 SCPAGYQGD 166
SCP GY G
Sbjct: 157 SCPEGYSGP 165
Score = 26.2 bits (58), Expect = 5.7
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 27/115 (23%)
Query: 72 LCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDA-LTYCRRGECQSDAECNYDQV-- 128
+ + + + TC Y G +CR +
Sbjct: 1 MRGSHHHHHHGSIEGRS--------AVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNK 52
Query: 129 ----------CNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDALSRCYP 173
CN C + C + C C C G+QG +C P
Sbjct: 53 TCMEGWMGPECNRAICRQGC---SPKHGSCKLPG---DCRCQYGWQGLYCDKCIP 101
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 38.9 bits (90), Expect = 5e-04
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDA 108
+C C GY G CE G +++ G + + +C+ L V
Sbjct: 447 ICRCDTGYIGK------------NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQ 494
Query: 109 LTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDA 167
C + C+ NCE+ CG + C C G++G A
Sbjct: 495 -CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC--GKCRCHPGFEGSA 550
Score = 33.9 bits (77), Expect = 0.026
Identities = 18/132 (13%), Positives = 27/132 (20%), Gaps = 21/132 (15%)
Query: 35 CGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKD 94
I T L QC + + C + G
Sbjct: 394 TATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECG------- 446
Query: 95 RPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHV 154
+C C GY+G C+ + Q + + C C
Sbjct: 447 --ICRCDTGYIGK--------NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC---- 492
Query: 155 ATCSCPAGYQGD 166
C C
Sbjct: 493 GQCLCHTSDVPG 504
Score = 33.5 bits (76), Expect = 0.031
Identities = 24/129 (18%), Positives = 28/129 (21%), Gaps = 37/129 (28%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C C PG+ G R + C +C+ VC C GY
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN---------VCECHSGYQLPLC 590
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDALS 169
C C S CG C G G S
Sbjct: 591 QECP-----------------------GCPSPCGKYISC-----AECLKFEKGPFGKNCS 622
Query: 170 RCYPAETTS 178
P S
Sbjct: 623 AACPGLQLS 631
Score = 30.1 bits (67), Expect = 0.45
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 18/87 (20%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDA 108
VC C GY +C P+PCG+ C G G
Sbjct: 578 VCECHSGYQLPLCQECP-------GCPSPCGKYISCAEC----------LKFEKGPFGKN 620
Query: 109 LTYCRRGECQSDAECNYDQVCNNYNCE 135
+ G S+ + C + E
Sbjct: 621 CSAACPGLQLSN-NPVKGRTCKERDSE 646
Score = 28.5 bits (63), Expect = 1.6
Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 35/128 (27%)
Query: 50 CSCPPGYTGDPLT-----QCRRFD-PHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPG 103
C C L +C + + C G C C PG
Sbjct: 495 CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG---------KCRCHPG 545
Query: 104 YVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
+ G A CQ + C +C +C C C +GY
Sbjct: 546 FEGSA--------CQCE--------RTTEGCLNPRRVECSGRGRCRCN----VCECHSGY 585
Query: 164 QGDALSRC 171
Q C
Sbjct: 586 QLPLCQEC 593
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 37.2 bits (87), Expect = 7e-04
Identities = 31/121 (25%), Positives = 40/121 (33%), Gaps = 39/121 (32%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C C GYTG +C + C NPC +A C C C+PGY G
Sbjct: 30 CQCLQGYTG---PRCEI--DVNECVSNPCQNDATCL-----DQIGEFQCICMPGYEGV-- 77
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEK---ACTSQ-CGINAQCTARNHVATCSCPAGYQG 165
+CE C S C N +C + + C CP G+ G
Sbjct: 78 -----------------------HCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
Query: 166 D 166
Sbjct: 115 H 115
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 36.9 bits (86), Expect = 8e-04
Identities = 26/117 (22%), Positives = 33/117 (28%), Gaps = 30/117 (25%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
+ D CE +PC KC K G CTCL G+ G
Sbjct: 27 EDSDKTNEFWNKYK-----DGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEG--- 73
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
C E ++C+ N C C + CSC GY
Sbjct: 74 KNC---------ELFTRKLCSLDNG------DCD--QFCHEEQNSVVCSCARGYTLA 113
Score = 29.2 bits (66), Expect = 0.47
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQ 85
S + C+ + VCSC GYT + P PCG+ +
Sbjct: 85 SLDNGDCDQFCHEEQNSVVCSCARGYTL---ADNGK--ACIPTGPYPCGKQTLER 134
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 37.4 bits (87), Expect = 0.001
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
S + C+ + VCSC GYT + P PCG+ +
Sbjct: 85 SLDNGDCDQFCHEEQNSVVCSCARGYTLA---DNGK--ACIPTGPYPCGKQTLER----- 134
Query: 91 SGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQ 141
+ T G D++T+ D ++N +
Sbjct: 135 RKRSVAQATSSSGEAPDSITWKPYDAADLD-PTENPFDLLDFNQTQPERGD 184
Score = 36.3 bits (84), Expect = 0.003
Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 30/136 (22%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
S C +C C+C G+ G C LC + + C +
Sbjct: 46 ETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNCE-LFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 91 SGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTA 150
VC+C GY + C CG
Sbjct: 102 V-----VCSCARGYTLA--------DNGKA-------------CIPTGPYPCGKQTLERR 135
Query: 151 RNHVATCSCPAGYQGD 166
+ VA + +G D
Sbjct: 136 KRSVAQATSSSGEAPD 151
Score = 35.1 bits (81), Expect = 0.006
Identities = 26/117 (22%), Positives = 34/117 (29%), Gaps = 30/117 (25%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
++ D CE +PC KC K G CTCL G+ G
Sbjct: 27 EDSDKTNEFW-----NKYKDGDQCETSPCQNQGKC-----KDGLGEYTCTCLEGFEG--- 73
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
C E ++C+ N C C + CSC GY
Sbjct: 74 KNC---------ELFTRKLCSLDNG------DCD--QFCHEEQNSVVCSCARGYTLA 113
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.4 bits (87), Expect = 0.002
Identities = 22/94 (23%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYC--RRGECQSDAECNYDQV 128
C PC N CQ CTC PGY G C + EC +
Sbjct: 6 SPCISQPCLHNGSCQDSI-----WGYTCTCSPGYEGS---NCELAKNECHPERTDGCQHF 57
Query: 129 CNNYNCEKACTSQCGINAQCTARNHVATCSCPAG 162
C C+ G + V C G
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 27.4 bits (61), Expect = 2.6
Identities = 20/106 (18%), Positives = 28/106 (26%), Gaps = 12/106 (11%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
C N C C+C PGY G C ++ G C P
Sbjct: 9 ISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCEL-AKNECHPERTDGCQHFCLP---- 60
Query: 91 SGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEK 136
G++ C+C GY L + D +
Sbjct: 61 -GQESYTCSCAQGY---RLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.8 bits (83), Expect = 0.002
Identities = 26/117 (22%), Positives = 32/117 (27%), Gaps = 31/117 (26%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
+ Q D CEPNPC C K + C C G+ G
Sbjct: 33 ENTEKTNEF--WKQYVDGDQ---CEPNPCLNGGLC-----KDDINSYECWCQVGFEGK-- 80
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
C+ DA CN C T + CSC GY+
Sbjct: 81 ------NCELDATCNIKNGRCKQFC-------------KTGADSKVLCSCTTGYRLA 118
Score = 26.9 bits (60), Expect = 2.4
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQ 85
+CSC GY ++ P PCG +
Sbjct: 108 LCSCTTGYRL---APDQK--SCKPAVPFPCGRVSVSH 139
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 36.8 bits (85), Expect = 0.003
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 54 PGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCR 113
PG P+ P+ C E+A C D S C C G+ G+ + R
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRS----CVCAVGWAGNGILCGR 60
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 35.2 bits (80), Expect = 0.010
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 13/129 (10%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
D+ G + CN C CP G+ +C D +P+ C + G K
Sbjct: 4 LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ--DPDTCSQLCVNLEGGYK 61
Query: 91 SGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTA 150
C C G+ D T C++ Y N + K + +
Sbjct: 62 -------CQCEEGFQLDPHTKA----CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 110
Query: 151 RNHVATCSC 159
+V
Sbjct: 111 LRNVVALDT 119
Score = 26.0 bits (56), Expect = 9.2
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 139 TSQCGINAQCTARNHVATCSCPAGYQGDALSRCYP 173
+ G + C C CP G+Q A RC
Sbjct: 5 DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED 39
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 35.0 bits (80), Expect = 0.012
Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 51 SCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALT 110
CP G+ G+ T C D L P+ C +K + C P Y G+
Sbjct: 29 FCPVGFLGNG-THCEDLDECALV-PDICFSTSKVPRCVNTQP-GFHCLPCPPRYRGNQ-- 83
Query: 111 YCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVA----TCSCPAGYQGD 166
+A QVC N K T C +A+C H + C C GY GD
Sbjct: 84 ---PVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGD 140
Query: 167 ALSRC 171
L
Sbjct: 141 GLICG 145
Score = 32.3 bits (73), Expect = 0.079
Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 7/145 (4%)
Query: 35 CGVNSEC----NVRNHIPVCSCPPGYTGDPLTQCRRFDP---HDLCEPNPCGENAKCQPG 87
C ++EC + + + C C GY GD L D +L C
Sbjct: 112 CHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKD 171
Query: 88 YDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQ 147
+ +GDA + +D + N + N +
Sbjct: 172 NCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDN 231
Query: 148 CTARNHVATCSCPAGYQGDALSRCY 172
C ++ A +GDA S
Sbjct: 232 CPYVHNPAQIDTDNNGEGDACSVDI 256
Score = 31.9 bits (72), Expect = 0.12
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 19/112 (16%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D C NPC A+C D S C G++G+ C+ EC
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGF---CPVGFLGNGTH------CEDLDECAL----V 50
Query: 131 NYNCEKACTSQCGINAQCTARNHVATC-SCPAGYQGDALSRCYPAETTSYRR 181
C +C C CP Y+G+ + ++
Sbjct: 51 PDICF-----STSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQ 97
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.018
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 26/122 (21%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPV---CTCLPGYV 105
VC C PG+ G QC + P+ E + + S + + C C
Sbjct: 459 VCRCGPGWLGS---QCEC--SEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDF 513
Query: 106 GDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQG 165
G C++++C + C + QC+ C C + + G
Sbjct: 514 GK--------------ITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTG 555
Query: 166 DA 167
Sbjct: 556 YY 557
Score = 30.1 bits (67), Expect = 0.42
Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 16/130 (12%)
Query: 37 VNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRP 96
C P G+ + + C E + +
Sbjct: 402 KVRGCPQEKEKSFTIKPVGFKD---SLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECG 458
Query: 97 VCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVAT 156
VC C PG++G +C+ E +Y + + C +C
Sbjct: 459 VCRCGPGWLGS--------QCECS-EEDYRPSQQDECSPREGQPVCSQRGECLC----GQ 505
Query: 157 CSCPAGYQGD 166
C C + G
Sbjct: 506 CVCHSSDFGK 515
Score = 28.1 bits (62), Expect = 1.8
Identities = 24/122 (19%), Positives = 30/122 (24%), Gaps = 18/122 (14%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPN---PCGENAKCQPGYDKSGKDRPVCTCL-PGY 104
C C +TG C D C + C KC+ G C C+ PG
Sbjct: 546 DCLCDSDWTGY---YCNCTTRTDTCMSSNGLLCSGRGKCECG---------SCVCIQPGS 593
Query: 105 VGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQ 164
GD C C + V A + N C G
Sbjct: 594 YGDTCEKCP--TCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKD 651
Query: 165 GD 166
Sbjct: 652 AV 653
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 33.5 bits (77), Expect = 0.020
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 29/118 (24%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C CPP + +P R D C + + + C+ G
Sbjct: 26 CDCPPDFELNP----TRVGCVDTRS-GNCYLDIRPR-----GDNGDTACSNEIGVGVS-- 73
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDA 167
+ C S + + C + + C G++ +
Sbjct: 74 ---KASCCCSLGKA--------------WGTPCEMCPAVNTSEYKILCPGGEGFRPNP 114
Score = 25.8 bits (57), Expect = 7.8
Identities = 11/74 (14%), Positives = 17/74 (22%), Gaps = 21/74 (28%)
Query: 98 CTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATC 157
C C P + + C + C ++ + N C
Sbjct: 26 CDCPPDFELNP---------------------TRVGCVDTRSGNCYLDIRPRGDNGDTAC 64
Query: 158 SCPAGYQGDALSRC 171
S G S C
Sbjct: 65 SNEIGVGVSKASCC 78
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 32.4 bits (73), Expect = 0.021
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 32 DSQCGVNSECNVR-NHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNP--CGENAKCQPGY 88
QC NS C + C C Y + +C +P+ C N C +AKC
Sbjct: 9 KKQCPQNSGCFRHLDEREECKCLLNYKQEG-DKCVE-NPNPTCNENNGGCDADAKCTEED 66
Query: 89 DKSGKDRPVCTCLPGY 104
S + C C
Sbjct: 67 SGSNGKKITCECTKPD 82
Score = 27.0 bits (59), Expect = 1.6
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 18/97 (18%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALT---------YCRRGECQSDA 121
C C +N+ C +R C CL Y + G C +DA
Sbjct: 5 HQCVKKQCPQNSGCFR----HLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADA 60
Query: 122 ECNYDQVCNNYN-----CEKACTSQCGINAQCTARNH 153
+C + +N C K + C+ +H
Sbjct: 61 KCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSHHHH 97
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 33.7 bits (77), Expect = 0.026
Identities = 14/112 (12%), Positives = 24/112 (21%), Gaps = 20/112 (17%)
Query: 66 RFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGEC-------- 117
F+ N C P D+ G V + L YC
Sbjct: 52 DFNSAVQLVENFC-----RNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLD 106
Query: 118 -------QSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAG 162
+ + Q N + + CG+ ++
Sbjct: 107 EDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELL 158
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 32.3 bits (72), Expect = 0.052
Identities = 29/166 (17%), Positives = 42/166 (25%), Gaps = 30/166 (18%)
Query: 30 LSDSQCGVNSEC-NVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPN-PCGENAKCQPG 87
++ N + + NH C C G C + CGE +C
Sbjct: 7 VTVDTICXNGQLVQMSNHFX-CMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIEN 65
Query: 88 YDKSGKDRPVCTCLPGYVGDALTY----CRRGECQSDAECNYDQV--------------- 128
D + + C C+ GY T C+ C EC + +
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 129 --------CNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
C N C V C C G+ D
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.077
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 22/96 (22%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
D C +PC C+ +C CLP + G C++ + V
Sbjct: 48 DQCASSPCQNGGSCK-----DQLQSYICFCLPAFEGRN--------CETHKDDQLICVNE 94
Query: 131 NYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
N CE+ C+ +C C GY
Sbjct: 95 NGGCEQYCSDH---------TGTKRSCRCHEGYSLL 121
Score = 29.6 bits (67), Expect = 0.32
Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
C C P + G C D Q D +G R C C GY
Sbjct: 70 CFCLPAFEG---RNCET--HKDDQLICVNENGGCEQYCSDHTGTKR-SCRCHEGYSLL 121
Score = 26.5 bits (59), Expect = 4.2
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQ 85
C C GY+ PCG+ +
Sbjct: 111 SCRCHEGYSLL---ADGV--SCTPTVEYPCGKIPILE 142
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.8 bits (70), Expect = 0.080
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
C C G+ G + F C + G C C+C PGY
Sbjct: 37 CDCRSGWEGRFCQREVSFLN---CSLDNGGCTHYCLEEVGWR-----RCSCAPGYKLG 86
Score = 25.4 bits (56), Expect = 6.6
Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 24/99 (24%)
Query: 68 DPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQ 127
P + + C + C G C C G+ G CQ +
Sbjct: 12 LPLEHPCASLCCGHGTC-----IDGIGSFSCDCRSGWEGRF--------CQREVSFLNCS 58
Query: 128 VCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
+ N G C CSC GY+
Sbjct: 59 LDN-----------GGCTHYCLEEVGWRRCSCAPGYKLG 86
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.7 bits (71), Expect = 0.16
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 11/62 (17%)
Query: 46 HIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTC-LPGY 104
+ + PP G + + E C C D+ VC C G+
Sbjct: 171 EVKLDDEPPNSGG-----GSPCEAGEEGEGGVCLNGGVCSVVD-----DQAVCDCSRTGF 220
Query: 105 VG 106
G
Sbjct: 221 RG 222
Score = 30.6 bits (68), Expect = 0.32
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 98 CTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQ-CGINAQCTARNHVAT 156
GE + D E + + C C+ + A
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 157 CSCPA-GYQGDALSRCYPAETTS 178
C C G++G S+ +
Sbjct: 213 CDCSRTGFRGKDCSQGKEEYIAT 235
Score = 29.0 bits (64), Expect = 1.1
Identities = 15/111 (13%), Positives = 25/111 (22%), Gaps = 10/111 (9%)
Query: 37 VNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRP 96
++ + + G + C NPC N C+ G+ +R
Sbjct: 591 IDGQSKDIRQMAEVQSTAGVKPSCSRET-----AKPCLSNPCKNNGMCRDGW-----NRY 640
Query: 97 VCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQ 147
VC C D +A +Q
Sbjct: 641 VCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQ 691
Score = 28.7 bits (63), Expect = 1.6
Identities = 8/58 (13%), Positives = 15/58 (25%)
Query: 69 PHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYD 126
P C+ + C C +D D + + D T + +
Sbjct: 1016 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP 1073
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 30.7 bits (69), Expect = 0.18
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDA 108
+C C GY G CE G +++ G + + +C+ L V
Sbjct: 108 ICRCDTGYIGK------------NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQ 155
Query: 109 LTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDA 167
C + C+ NCE+ CG + C C G++G A
Sbjct: 156 -CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSA 211
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 30.1 bits (67), Expect = 0.18
Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 6/74 (8%)
Query: 32 DSQCGVNSEC-NVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
D+ N+ C + C G+ +C C A+C
Sbjct: 15 DTNVPENAACYRYLDGTEEWRCLLGFKEVG-GKCVPASITCEENNGGCAPEAECTM---- 69
Query: 91 SGKDRPVCTCLPGY 104
K C C
Sbjct: 70 DDKKEVECKCTKEG 83
Score = 29.3 bits (65), Expect = 0.27
Identities = 14/67 (20%), Positives = 17/67 (25%), Gaps = 12/67 (17%)
Query: 68 DPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYC--------RRGECQS 119
C ENA C + CL G+ G C
Sbjct: 8 SSAHKCIDTNVPENAACY----RYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAP 63
Query: 120 DAECNYD 126
+AEC D
Sbjct: 64 EAECTMD 70
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 31.3 bits (71), Expect = 0.19
Identities = 20/101 (19%), Positives = 24/101 (23%), Gaps = 10/101 (9%)
Query: 73 CEPNPCGENAKCQPGYDK-SGKDRPVCTCLPGYV---GDALTYCRRGECQSDAECNYDQV 128
C N P K KD C GY G CQ D +
Sbjct: 17 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 76
Query: 129 -CNNYNCEKACTSQCGI-----NAQCTARNHVATCSCPAGY 163
C+ +C G T V SC +
Sbjct: 77 ACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETF 117
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 29.6 bits (66), Expect = 0.19
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 32 DSQCGVNSEC-NVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
D+ N+ C + C + D + + C A+C+
Sbjct: 9 DTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM---- 64
Query: 91 SGKDRPVCTCLPGY 104
+ K+ VC C
Sbjct: 65 NDKNEIVCKCTKEG 78
Score = 27.3 bits (60), Expect = 1.2
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 13/68 (19%)
Query: 68 DPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCR---------RGECQ 118
C ENA C + CL + DA G C
Sbjct: 2 SSEHRCIDTNVPENAACY----RYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCA 57
Query: 119 SDAECNYD 126
+AEC +
Sbjct: 58 PEAECKMN 65
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 30.5 bits (69), Expect = 0.19
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 126 DQVCNNYN---CEKA--CTSQCGINAQCTARNHVATCSCPAGYQGDALSRCYPAET 176
D C+ C A C + +C + TC+C GY G +C +
Sbjct: 106 DDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP---QCQFVQV 158
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.8 bits (69), Expect = 0.21
Identities = 22/117 (18%), Positives = 32/117 (27%), Gaps = 18/117 (15%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C CPPG+ G + C C+ D C+C G+ G
Sbjct: 218 CICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL-PDPYGCSCATGWKGL-- 274
Query: 110 TYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
+C+ C+ C C + C C G+QG
Sbjct: 275 ----------QCNEACHPGFYGPDCKLRCS--CNNGEMC---DRFQGCLCSPGWQGL 316
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.9 bits (69), Expect = 0.24
Identities = 25/109 (22%), Positives = 30/109 (27%), Gaps = 24/109 (22%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCN 130
+ C N G KCQ + CTC GY CQ EC + C+
Sbjct: 4 ENCNVNNGGCAQKCQMI-----RGAVQCTCHTGYRLTEDGRT----CQDVNECAEEGYCS 54
Query: 131 NYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDALSRCYPAETTSY 179
CT C C AGY+ R A
Sbjct: 55 Q---------------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP 88
Score = 30.5 bits (68), Expect = 0.34
Identities = 24/150 (16%), Positives = 37/150 (24%), Gaps = 12/150 (8%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDK 90
+ + G +C + C+C GY D + N C E C G
Sbjct: 7 NVNNGGCAQKCQMIRGAVQCTCHTGYRLTE-------DGRTCQDVNECAEEGYCSQGCTN 59
Query: 91 SGKDRPVCTCLPGYVGDALTYCRRGE----CQSDAECNYDQVCNNYNCEKACTSQCGINA 146
S C C GY + A + + E NA
Sbjct: 60 SEGAF-QCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 147 QCTARNHVATCSCPAGYQGDALSRCYPAET 176
+H + D + R +
Sbjct: 119 IALDFHHRRELVFWSDVTLDRILRANLNGS 148
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.0 bits (70), Expect = 0.27
Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 17/125 (13%)
Query: 30 LSDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDP---HDLCEPNPCGENAKCQP 86
L S+ G+ S +G L CR P H + +
Sbjct: 257 LKTSESGLPSTR--------IKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDI 308
Query: 87 GYDKSGKDRPVC--TCLPGYVGDALTY-CRRGECQSDAECNYDQVCNNYNCEKACTSQCG 143
+ K C C TY + C Y ++ +N + K + G
Sbjct: 309 ---VAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGG 365
Query: 144 INAQC 148
I+
Sbjct: 366 ISGYT 370
Score = 29.4 bits (66), Expect = 0.64
Identities = 25/130 (19%), Positives = 31/130 (23%), Gaps = 10/130 (7%)
Query: 63 QCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGE---CQS 119
C F P N C +SG G +L CR C S
Sbjct: 235 GCLFFTFFSQEWPKESQRNL-CLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHS 293
Query: 120 DA-----ECNYDQVCNNYNCEKACTSQCGINAQCTARNH-VATCSCPAGYQGDALSRCYP 173
+ +AC C +C + A SC G L
Sbjct: 294 SFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSN 353
Query: 174 AETTSYRRGR 183
T GR
Sbjct: 354 GSPTKILHGR 363
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 29.6 bits (67), Expect = 0.31
Identities = 14/83 (16%), Positives = 18/83 (21%), Gaps = 13/83 (15%)
Query: 98 CTCLPGYVGDALTY---------CRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQC 148
C C D C + E N N + C S G
Sbjct: 26 CECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN----INGATLKSQCCSSLGAAWGS 81
Query: 149 TARNHVATCSCPAGYQGDALSRC 171
C GY ++C
Sbjct: 82 PCTLCQVDPICGKGYSRIKGTQC 104
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.4 bits (68), Expect = 0.39
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 10/62 (16%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTC-LPGYVG----DALTYCRRGECQSDAECNY 125
C+ + C C + D C C + + G D T + +
Sbjct: 186 TTCQEDSCSNQGVCLQQW-----DGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Query: 126 DQ 127
Sbjct: 241 PP 242
Score = 26.1 bits (57), Expect = 9.0
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 133 NCEKACTS----QCGINAQCTARNHVATCSCPA-GYQGDALSRCYPAETTSYRRGRVYYN 187
CE T+ C C + +C C + G + S G++ Y
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 239
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 29.4 bits (66), Expect = 0.39
Identities = 30/149 (20%), Positives = 44/149 (29%), Gaps = 36/149 (24%)
Query: 35 CGVNSECNVRNHIPVCSCPPGYTGD------PLTQCRRFDPHDLCEPNPCGENAKCQ--P 86
C +S C C C PG++ P+ C + CG+ + C
Sbjct: 9 CPQDSSCVNATA---CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE 65
Query: 87 G-YDKSGKDRPVCTCLPGYVGDALTYCRRGE----CQSDAECNYDQVCNNYNCEKACTSQ 141
G Y C C PGY + + E CQ EC+ Q
Sbjct: 66 GSY--------DCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG------------QHQ 105
Query: 142 CGINAQCTARNHVATCSCPAGYQGDALSR 170
C + C +C C G++
Sbjct: 106 CDSSTVCFNTVGSYSCRCRPGWKPRHGIP 134
Score = 27.1 bits (60), Expect = 2.5
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 20/101 (19%)
Query: 76 NPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGE-CQSDAECNYDQVCNNYNC 134
C +++ C C C PG+ + E C EC +
Sbjct: 7 RWCPQDSSCVNAT--------ACRCNPGFSSFSEIITTPMETCDDINECATLSKVS---- 54
Query: 135 EKACTSQCGINAQCTARNHVATCSCPAGYQGDALSRCYPAE 175
CG + C C C GY+ + ++ + E
Sbjct: 55 -------CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNE 88
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 29.9 bits (66), Expect = 0.59
Identities = 16/110 (14%), Positives = 25/110 (22%), Gaps = 5/110 (4%)
Query: 49 VCSCPPGYTGDPLTQCRRFDPH-DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
+CPP +P T +P C KC Y + V C
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATC--VKKCPRNYVVTDHGSCVRACGADSYEM 294
Query: 108 ALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATC 157
R +C+ E + +N +
Sbjct: 295 EEDGVR--KCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 27.6 bits (60), Expect = 2.7
Identities = 22/154 (14%), Positives = 32/154 (20%), Gaps = 15/154 (9%)
Query: 34 QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGY-DKSG 92
S ++ + SC P C + + +C KS
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSP 204
Query: 93 KDRPVCTCLPGYVGDALTYCR-------RGECQSDAECNYDQVCNNYNCEKACTSQCGIN 145
D C G G + C C+ Y + +
Sbjct: 205 SDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFG 264
Query: 146 AQCTARNHVATCSCPAGYQGDALSRCYPAETTSY 179
A C CP Y C A
Sbjct: 265 ATC-------VKKCPRNYVVTDHGSCVRACGADS 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.68
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 79 GENAKCQPGYDKSGKDRP-VCTCLPGYVG-----DALTY-CRRGECQSDAECNYDQVCNN 131
G + D+ G+ + PG V +AL Y R ++ ++ N
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV---EIVN- 1845
Query: 132 YNCE 135
YN E
Sbjct: 1846 YNVE 1849
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 28.1 bits (63), Expect = 0.84
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 14/84 (16%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C C G+ P R C C + C C GY+ D
Sbjct: 26 CVCAEGFAPIPHEPHRC---QMFCNQTACPADCDPNTQAS--------CECPEGYILDDG 74
Query: 110 TYCR-RGECQSDAECNYDQVCNNY 132
C EC++ C+ VC+N
Sbjct: 75 FICTDIDECENGGFCS--GVCHNL 96
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 28.6 bits (64), Expect = 0.89
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 126 DQVCNNYN---CEKA--CTSQCGINAQCTARNHVATCSCPAGYQGD 166
D+ C+ C A + C + +C + TC C G+ G
Sbjct: 106 DERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 25.9 bits (57), Expect = 7.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
C C + +C + C C PG+ G
Sbjct: 120 AACTNTSCSGHGECVETINNYT-----CKCDPGFSGL 151
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 29.3 bits (64), Expect = 0.91
Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 4/110 (3%)
Query: 62 TQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDA 121
C CE N + + + +P + + T R + S
Sbjct: 118 EGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQ 177
Query: 122 ECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGDALSRC 171
+ + + C S C + C + C C GY +
Sbjct: 178 KNVPPFGLDGVYISEPCPSYCSGHGDCIS----GVCFCDLGYTAAQGTCV 223
Score = 26.6 bits (57), Expect = 6.8
Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 11/89 (12%)
Query: 75 PNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNC 134
P+ C + C G VC C GY T S+ ++
Sbjct: 195 PSYCSGHGDCISG---------VCFCDLGYTAAQGTCVSNTPNHSEMFDRFE--GKLSPL 243
Query: 135 EKACTSQCGINAQCTARNHVATCSCPAGY 163
T T + + G
Sbjct: 244 WYKITGGQVGTGCGTLNDGRSLYFNGLGK 272
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 28.8 bits (65), Expect = 0.97
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 10/89 (11%)
Query: 100 CLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSC 159
C GY +A + R S C Y+ G CT CS
Sbjct: 77 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCS- 135
Query: 160 PAGYQGDALSRCYPAETTSYRRGRVYYNK 188
C P + +Y++ + Y
Sbjct: 136 ---------KICEPGYSPTYKQDKHYGYN 155
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 8/59 (13%)
Query: 125 YDQVCNNYN---CEKA--CTSQCGINAQCTARNHVATCSCPAGYQGDALSRCYPAETTS 178
D+ C C A C +C TCSC G+ G C
Sbjct: 105 NDEHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGP---ECEYVRDDD 160
>1r12_A ADP-ribosyl cyclase; X-RAY crystallography, cyclic ADP- ribose,
naadp, Ca2+ signalling, hydrolase; 1.70A {Aplysia
californica} SCOP: c.23.14.3 PDB: 1lbe_A 1r15_A 1r16_A
3i9j_A* 3i9o_A* 3zwn_A* 3zwm_A* 3zwp_A* 3zwv_A* 3zww_A*
3zwo_A* 1r0s_A 3i9l_A* 3i9k_A*
Length = 258
Score = 28.5 bits (63), Expect = 1.4
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 89 DKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTS 140
+ K + LPGY+ ++L +C +++ N + C
Sbjct: 89 NTGRKYITLEDTLPGYMLNSLVWCG---QRANPGFNEKVCPDFKTCPVQARE 137
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.5 bits (63), Expect = 1.4
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 126 DQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQ 164
+N C+ C Q + TC+CP G
Sbjct: 272 RTTLSNGGCQYLCL----PAPQINPHSPKFTCACPDGML 306
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 28.4 bits (62), Expect = 1.6
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 9/109 (8%)
Query: 45 NHIPVCSCPPGYTGDP-LTQCRRFDP------HDLCEPNPCGENAKCQ--PGYDKSGKDR 95
N+ + C L C+ CEP ++ +C + K
Sbjct: 47 NNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLV 106
Query: 96 PVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGI 144
C C+ D EC+ + C + C C +
Sbjct: 107 KQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTL 155
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 1/75 (1%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGDAL 109
C P G + C+ C + + Y GD
Sbjct: 305 CRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQ 364
Query: 110 TY-CRRGECQSDAEC 123
+Y + +C
Sbjct: 365 SYRGTSSTTTTGKKC 379
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 28.2 bits (63), Expect = 1.7
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 84 CQPGYDKSGKDRPVCTCLPGYV---GDALTYCRRGECQSDAECNYD-QVCNNYNCEKACT 139
QP Y +D + TC GY G+ + + CQ D + C +C +
Sbjct: 18 LQPQYQF--RDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRN 75
Query: 140 SQCGINAQCTARNHVATCSCPAGYQ 164
G + + T V T Y
Sbjct: 76 LPNG-DFRYTTTMGVNTYKARIQYY 99
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 27.8 bits (61), Expect = 2.0
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 34 QCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGK 93
QC V++EC C C YTG+ + E +P N K +
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQC--------VAEGSPQRVNGKVKGRIFVGSS 65
Query: 94 DRPV---CTCLPGYV 105
PV T L YV
Sbjct: 66 QVPVVFENTDLHSYV 80
Score = 27.0 bits (59), Expect = 4.2
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 139 TSQCGINAQCTARNHVATCSCPAGYQGDALSRCYPAETTSYRRGRV 184
QC ++A+C C C A Y G+ C + G+V
Sbjct: 12 RHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKV 56
Score = 25.9 bits (56), Expect = 9.9
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 17/84 (20%)
Query: 69 PHDLCEPN--PCGENAKCQP---GYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAEC 123
C N C +A+C+ G+ C C+ Y G+ R+ + +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFC--------CRCVANYTGN----GRQCVAEGSPQR 51
Query: 124 NYDQVCNNYNCEKACTSQCGINAQ 147
+V + N
Sbjct: 52 VNGKVKGRIFVGSSQVPVVFENTD 75
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 28.3 bits (62), Expect = 2.1
Identities = 19/151 (12%), Positives = 40/151 (26%), Gaps = 12/151 (7%)
Query: 32 DSQCGVNSECNVRNHIPVCSCPPGY---TGDPLTQCRRFDPHDLCEPNPCGENAKCQPGY 88
+ C S+ ++ +C P + +G+ +T + + C +C
Sbjct: 255 EYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE 314
Query: 89 DKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQC 148
C +G + + C C + + C
Sbjct: 315 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL---------C 365
Query: 149 TARNHVATCSCPAGYQGDALSRCYPAETTSY 179
C C G+Q D ++ A +
Sbjct: 366 VNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 396
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.9 bits (62), Expect = 2.1
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 4/83 (4%)
Query: 48 PVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYD-KSGKDRPVCTCLPGYVG 106
PPGY C C + + + G
Sbjct: 12 ASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYHRCDGVTNTVTPEEVINTTG 71
Query: 107 DALTYCRRGECQSDAECNYDQVC 129
+ + R ++ +Y VC
Sbjct: 72 EGIFDIR---ENANECESYLDVC 91
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 28.1 bits (62), Expect = 2.1
Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 11/134 (8%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQP----GYDKSGKDRPVC--TCLPG 103
C Y P + + C+ C E++ + +G C
Sbjct: 293 ELCMDFYHDLPWRPAEGRNSNA-CKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHN 351
Query: 104 YVGDALTYCR----RGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSC 159
+G C+ + + + N + C C + C C
Sbjct: 352 TMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRC 411
Query: 160 PAGYQGDALSRCYP 173
+G+ C
Sbjct: 412 KLHVEGERCDVCKE 425
Score = 27.3 bits (60), Expect = 3.6
Identities = 30/130 (23%), Positives = 36/130 (27%), Gaps = 15/130 (11%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPV------CTCLPG 103
C P Y P R +LCEP C G D V C C
Sbjct: 358 EQCKPFYFQHP---ERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414
Query: 104 YVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCPAGY 163
G+ C+ G AE Y C + C T C + C C
Sbjct: 415 VEGERCDVCKEGFYDLSAEDPYG--CKSCACNPLGT--IPGGNPCDSETGY--CYCKRLV 468
Query: 164 QGDALSRCYP 173
G +C P
Sbjct: 469 TGQRCDQCLP 478
Score = 26.2 bits (57), Expect = 8.4
Identities = 21/141 (14%), Positives = 37/141 (26%), Gaps = 16/141 (11%)
Query: 31 SDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCR------RFDPHDLCEPNPCGENAKC 84
+ C ++ +V C C G+ C+ + C+ C
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTI 449
Query: 85 QPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGI 144
G + C C G C + + + C+ C +
Sbjct: 450 PGGNPCDSETG-YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCD-------CDLGGAL 501
Query: 145 NAQCTARNHVATCSCPAGYQG 165
N C+ + CSC G
Sbjct: 502 NNSCSEDSG--QCSCLPHMIG 520
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 27.6 bits (60), Expect = 2.1
Identities = 13/76 (17%), Positives = 16/76 (21%), Gaps = 7/76 (9%)
Query: 95 RPVCTCLPGYVGDALTYCR-RGECQSDAECNYDQV---CNNYNCEKACTSQCGINAQCTA 150
+ CL G A + C C C
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE 163
Query: 151 RNHVATCSCPAGYQGD 166
R C CP G+ G
Sbjct: 164 RR---ICECPDGFHGP 176
>1eje_A FMN-binding protein; structural genomics, PSI, protein struc
initiative; HET: FMN; 2.20A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: b.45.1.2
Length = 192
Score = 27.6 bits (62), Expect = 2.2
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 10 GFEPSPSRLVASPRDYLGIRLSDSQCGVNSECNVRNHIPV 49
G + SR V PR I + + EC + V
Sbjct: 110 GLAWTSSRRVKPPR----IV----EAPGHLECELLRMFEV 141
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 27.9 bits (61), Expect = 2.3
Identities = 24/139 (17%), Positives = 35/139 (25%), Gaps = 24/139 (17%)
Query: 35 CGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPGYDKSGKD 94
+ C N C C TG +C+ + P PG
Sbjct: 300 NLHATVCVYDNSKLTCECEHNTTGPDCGKCK-----KNYQGRP------WSPGSYLPIPK 348
Query: 95 RPVCTCLPGYVGDALTYCR--RGECQSDAECNYDQVCN------NYNCEKACTSQCGINA 146
C+P C CQ+ C+ + C CEK +C
Sbjct: 349 GAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEK---LRCEEAG 405
Query: 147 QCTARNHVATCSCPAGYQG 165
C + + P G
Sbjct: 406 SCG--SDSGQGAPPHGTHH 422
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 26.0 bits (58), Expect = 2.5
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 50 CSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQ---PGYDKSGKDRPVCTCLPGYVG 106
C CP GY +C D C N C+ G+ CTC G+
Sbjct: 28 CECPFGYILAG-NECVDTDE---CSVGNPCGNGTCKNVIGGF--------ECTCEEGFEP 75
Query: 107 DALTYC 112
+ C
Sbjct: 76 GPMMTC 81
Score = 25.2 bits (56), Expect = 6.2
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 35/104 (33%)
Query: 73 CEPNPCGENAKC--QPG-YDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVC 129
C+ ++ +C G Y C C GY+ C EC+ C
Sbjct: 8 CKEPDVCKHGQCINTDGSYR--------CECPFGYILAGNE------CVDTDECSVGNPC 53
Query: 130 NNYNCEKACTSQCGINAQCTARNHVA--TCSCPAGYQGDALSRC 171
N C+ N + C+C G++ + C
Sbjct: 54 GNGTCK----------------NVIGGFECTCEEGFEPGPMMTC 81
>2d5m_A Flavoredoxin; flavoprotein, FMN binding, electron transport; HET:
FMN MES; 1.05A {Desulfovibrio vulgaris str}
Length = 190
Score = 26.8 bits (60), Expect = 3.5
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 10 GFEPSPSRLVASPRDYLGIRLSDSQCGVNSECNVRNHIPV 49
G P P V +P + + + E + + I +
Sbjct: 97 GLTPVPGEHVDAPY----VG----EFPMAIELKLIHQIEI 128
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 27.2 bits (60), Expect = 3.6
Identities = 10/62 (16%), Positives = 13/62 (20%), Gaps = 1/62 (1%)
Query: 88 YDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAEC-NYDQVCNNYNCEKACTSQCGINA 146
DK + PG DA C+ C C C
Sbjct: 213 LDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQT 272
Query: 147 QC 148
+
Sbjct: 273 KH 274
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 26.9 bits (60), Expect = 4.0
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 10/89 (11%)
Query: 100 CLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSC 159
C GY +A + R S C Y+ G CT CS
Sbjct: 134 CNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCS- 192
Query: 160 PAGYQGDALSRCYPAETTSYRRGRVYYNK 188
C P + +Y++ + Y
Sbjct: 193 ---------KICEPGYSPTYKQDKHYGYN 212
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 26.8 bits (58), Expect = 4.9
Identities = 21/159 (13%), Positives = 37/159 (23%), Gaps = 22/159 (13%)
Query: 28 IRLSDSQCGVNSECNVRNHIPVCSCPPGYTGDPLTQCRRFDPHDLCEPNPCGENAKCQPG 87
+R + + P + Y+ ++ R C + + +
Sbjct: 227 LRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGR------CVCHGHADVCDAKDP 280
Query: 88 YDKSGKDRPVCTCLPGYVGDALTYC---------RRGECQSDAECNYDQVCNN----YNC 134
D R C C G + C + S EC + Y
Sbjct: 281 LDPF---RLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYD 337
Query: 135 EKACTSQCGINAQCTARNHVATCSCPAGYQGDALSRCYP 173
+ + N + C G RC P
Sbjct: 338 PEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLP 376
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 26.8 bits (58), Expect = 5.8
Identities = 20/113 (17%), Positives = 25/113 (22%), Gaps = 17/113 (15%)
Query: 49 VCSCPPGYTGDPLTQCRRFDP-HDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
V +CPP Y +C F DL C + K P C
Sbjct: 238 VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSG------ 291
Query: 108 ALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQCGINAQCTARNHVATCSCP 160
Y C C K C G + + C
Sbjct: 292 ---YTMNSSNLLCTPC-------LGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 23.6 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
D CE NPC C+ + C C G+ G
Sbjct: 4 DQCESNPCLNGGSCKDDIN-----SYECWCPFGFEGK 35
>1isi_A Bone marrow stromal cell antigen 1; ADP ribosyl cyclase, NAD
glycohydrolase, CNS, ethenonad, HYD; HET: NAG ENQ; 2.10A
{Homo sapiens} SCOP: c.23.14.3 PDB: 1isg_A* 1isf_A*
1ish_A* 1isj_A* 1ism_A*
Length = 265
Score = 25.8 bits (56), Expect = 8.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 89 DKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEK 136
D + + P+ L G V D L++CR ++D+ +Y + +CE
Sbjct: 89 DNTRRFMPLSDVLYGRVADFLSWCR---QKADSGLDYQSCPTSEDCEN 133
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase,
glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Length = 278
Score = 25.8 bits (56), Expect = 9.1
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 87 GYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCE 135
Y K + + L GY+ D L +C ++ N C ++ +
Sbjct: 127 EYAKRRRLMTLEDTLLGYLADGLRWCG---EPGSSDLNI-WSCPDWRKD 171
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 25.9 bits (57), Expect = 9.7
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 15/53 (28%)
Query: 81 NAKCQPGYDKSGKDRPVC--TCLPGYVGDALTYCRRGECQSDAE----CNYDQ 127
+ C P K+ + VC C+P C E D C Q
Sbjct: 486 SDPCAPNEMKNMQPGDVCCWICIP---------CEPYEYLVDEFTCMDCGPGQ 529
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site
closure, inhibitory conformation, alternative splicing,
diabetes mellitus; 1.45A {Homo sapiens} PDB: 2o3s_A*
3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A*
3dzk_A* 3i9m_A* 3i9n_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A*
2pgl_A* 2o3r_A* 2hct_A* 3dzj_A* 3raj_A ...
Length = 262
Score = 25.8 bits (56), Expect = 9.8
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 89 DKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCE 135
+ L GY+ D LT+C ++ NY Q C ++ +
Sbjct: 99 QVQRDMFTLEDTLLGYLADDLTWCG---EFDTSKINY-QSCPDWRKD 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.471
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,009,378
Number of extensions: 178469
Number of successful extensions: 1525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 520
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)