RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2457
(189 letters)
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 30.0 bits (67), Expect = 0.029
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
E C +C D S R +C C PG+ G
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43
>d1r12a_ c.23.14.3 (A:) ADP ribosyl cyclase {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 251
Score = 29.8 bits (67), Expect = 0.15
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 95 RPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTS 140
+ LPGY+ ++L +C +++ N + C
Sbjct: 95 ITLEDTLPGYMLNSLVWCG---QRANPGFNEKVCPDFKTCPVQARE 137
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 26.7 bits (59), Expect = 0.27
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 129 CNNYNCEKACTSQCGINAQCTARNHVATCSCPAGYQGD 166
C E C S C + C +C C +G++G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 24.8 bits (54), Expect = 1.4
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 6/45 (13%)
Query: 63 QCRRFDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
QC C C + C G C C G+ G
Sbjct: 1 QCLVLPLEHPCASLCC-GHGTCIDGIG-----SFSCDCRSGWEGR 39
Score = 22.8 bits (49), Expect = 8.6
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 32 DSQCGVNSECNVRNHIPVCSCPPGYTGD 59
S C + C C C G+ G
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.0 bits (57), Expect = 0.57
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 139 TSQCGINAQCTARNHVATCSCPAGYQGD 166
QC ++A+C C C A Y G+
Sbjct: 6 RHQCSVHAECRDYATGFCCRCVANYTGN 33
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.4 bits (56), Expect = 0.72
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
D CE NPC C+ + C C G+ G
Sbjct: 4 DQCESNPCLNGGSCKDDI-----NSYECWCPFGFEGK 35
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 250
Score = 27.1 bits (60), Expect = 1.2
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 95 RPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEK 136
P+ L G V D L++CR ++D+ +Y + +CE
Sbjct: 94 MPLSDVLYGRVADFLSWCR---QKADSGLDYQSCPTSEDCEN 132
Score = 24.8 bits (54), Expect = 6.7
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 42 NVRNHIPVCSCPPGYTGDPLTQCRRFDPHDL-----CEPNPCGENAK 83
N R +P+ G D L+ CR+ L C N
Sbjct: 89 NTRRFMPLSDVLYGRVADFLSWCRQKADSGLDYQSCPTSEDCENNPV 135
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 24.6 bits (54), Expect = 1.2
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
+ C NPC +A C C C+PGY G
Sbjct: 2 NECVSNPCQNDATCLDQI-----GEFQCICMPGYEGV 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 24.7 bits (54), Expect = 1.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
D CE +PC KC+ G CTCL G+ G
Sbjct: 1 DQCETSPCQNQGKCKDGL-----GEYTCTCLEGFEGK 32
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 24.8 bits (54), Expect = 1.6
Identities = 8/41 (19%), Positives = 10/41 (24%), Gaps = 3/41 (7%)
Query: 67 FDPHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
+ C C C C+ GY GD
Sbjct: 3 YPGCPSSYDGYCLNGGVCMHIESLDS---YTCNCVIGYSGD 40
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 24.3 bits (53), Expect = 1.6
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
D C +PC C+ +C CLP + G
Sbjct: 3 DQCASSPCQNGGSCKDQL-----QSYICFCLPAFEGR 34
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 24.4 bits (53), Expect = 1.7
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 73 CEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
C C CQ S VC C G+ G
Sbjct: 1 CSEPRCFNGGTCQQALYFSD---FVCQCPEGFAGK 32
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 26.7 bits (59), Expect = 1.8
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 95 RPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNCEKACTSQC 142
+ L GY+ D LT+C + ++ NY Q C ++ + C++
Sbjct: 99 FTLEDTLLGYLADDLTWCG---EFNTSKINY-QSCPDWRKD--CSNNP 140
>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 270
Score = 26.4 bits (57), Expect = 2.5
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 81 NAKCQPGYDKSGKDRPVCTCLPGYVGDALTYCRRGECQSDAECNYDQVCNNYNC 134
A ++ + PV L R + A N Q+ N+ +
Sbjct: 52 GATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGAQMVNDVSG 105
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 23.9 bits (52), Expect = 2.8
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
D C +PC N +C + C C G+ G
Sbjct: 1 DECASSPCLHNGRCLDKI-----NEFQCECPTGFTGH 32
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 23.7 bits (51), Expect = 4.5
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
L C + C D+ C C+ GY+G+
Sbjct: 5 PLSHDGYCLHDGVCM---YIEALDKYACNCVVGYIGE 38
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 22.4 bits (48), Expect = 8.3
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
C C + +C + C C PG+ G
Sbjct: 2 AACTNTSCSGHGECVETI-----NNYTCKCDPGFSGL 33
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 22.4 bits (48), Expect = 8.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 71 DLCEPNPCGENAKCQPGYDKSGKDRPVCTCLPGYVGD 107
C+ C + +C C+C PG+ G
Sbjct: 2 ASCQDMSCSKQGECLETI-----GNYTCSCYPGFYGP 33
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 22.4 bits (48), Expect = 9.8
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 139 TSQCGINAQCTARNHVATCSCPAGYQGD 166
+ C +C C C GY G
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTGP 37
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 22.5 bits (48), Expect = 9.8
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 69 PHDLCEPNPCGENAKCQPGYDKSGKDRPVCTCLP-GYVGD 107
P + C PC C G DR C C GY G
Sbjct: 1 PVNPCCYYPCQHQGICVR----FGLDRYQCDCTRTGYSGP 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.471
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,666
Number of extensions: 40993
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 178
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)