BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy246
(615 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|B Chain B, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|C Chain C, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|D Chain D, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
Length = 425
Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 198/544 (36%), Positives = 273/544 (50%), Gaps = 139/544 (25%)
Query: 76 VGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDIL 135
+G LLIEGKTK++ + P +++NKDRITAGDG +AHDL+GKA I+ +TN VF+IL
Sbjct: 12 LGKLLIEGKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEIL 71
Query: 136 NAA--EMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWI 193
+A + + +K + E + L K ++ + W+
Sbjct: 72 KSAGIKTAFVKIASETAF-------------LSKKCEM----------------IPIEWV 102
Query: 194 ADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQ 253
LA+ FL RN PG E +RF PP Q
Sbjct: 103 TRRLAT-----------GSFLKRN----------------------PGVPEGFRFTPPKQ 129
Query: 254 ETFFKDDANHDPQWSDEQILSANLDN----VARDEVQIMKRLSLVVFEILEKVWASLNCV 309
ETFFKDDANHDPQWS+EQI+SA + + RDEV M++ ++++FEILEK WA +C
Sbjct: 130 ETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCA 189
Query: 310 LVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMK 369
L+DMKIEFG+D EG + VL D
Sbjct: 190 LIDMKIEFGVDTEGSI--------------------------------------VLAD-- 209
Query: 370 IEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWI 429
VIDSDSWRLWP G K LM DKQVYRNL+ VTA L+ VK NF W+
Sbjct: 210 ---------------VIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLDTVKRNFAWV 254
Query: 430 ADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWS-DEQILSANLDNVARDEVQ 488
D L +K + VV+ +GS +D KI A + D ++ SA+ + ++
Sbjct: 255 KDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAH--KATEETLR 312
Query: 489 IMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINC-PPLDSTGR 547
IM++ + +VFIAVAG+SNGLGPV+SGNT YPVINC PP D +
Sbjct: 313 IMQQYE------------DTHGALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPSDKLVQ 360
Query: 548 DVWSSLNLPAGIACSTVTAPSNXXXXXXXXXXXRDFFIWSKLRMYQTKLYIALNKEDKKS 607
D+WSSL++P+G+ C+TV P + +D+ +W +LR Q + +L + DKK
Sbjct: 361 DIWSSLSVPSGLGCATVIYPDSAALMAAQIIGLQDYLVWGRLRSKQLDMAHSLRQADKKL 420
Query: 608 RQEN 611
R +
Sbjct: 421 RNQT 424
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 117/257 (45%), Gaps = 67/257 (26%)
Query: 11 VGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDIL 70
+G LLIEGKTK++ + P +++NKDRITAGDG +AHDL+GKA I+ +TN VF+IL
Sbjct: 12 LGKLLIEGKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEIL 71
Query: 71 NA-----------------SENVGDLLIEGKTKKIH------------------------ 89
+ S+ + IE T+++
Sbjct: 72 KSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQET 131
Query: 90 LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEI--ATKTNTLVFDILNAA----EMSMI 143
K D N ++++I + L G+ E+ K L+F+IL A + ++I
Sbjct: 132 FFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALI 191
Query: 144 KYSEENEYD----------------KIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVK 187
E D ++ P G K LM DKQVYRNL+ VTA L+ VK
Sbjct: 192 DMKIEFGVDTEGSIVLADVIDSDSWRLWPSGD---KRLMVDKQVYRNLTTVTAADLDTVK 248
Query: 188 LNFTWIADTLASVKRPT 204
NF W+ D L +K PT
Sbjct: 249 RNFAWVKDQLDFLK-PT 264
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 168/421 (39%), Positives = 213/421 (50%), Gaps = 74/421 (17%)
Query: 198 ASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFF 257
A +K T F+A IPIEWV RR+ATGS+LKR+PG +E Y+F PP E FF
Sbjct: 71 AGIKTAFTRKCGETAFIAPQCEXIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVELFF 130
Query: 258 KDDANHDPQWSDEQILSANLDN----VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDM 313
KDDAN+DPQWS+EQ+++A + + EV I + +FEILEK W NC LVD
Sbjct: 131 KDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTLVDX 190
Query: 314 KIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFG 373
KIEFG+D K EI VL D+
Sbjct: 191 KIEFGVDVTTK---------------------------EI----------VLADV----- 208
Query: 374 IDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTL 433
ID+DSWRLWP G + KDKQ YR+L VT EGL VK NF W+A+ +
Sbjct: 209 ------------IDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQXVKKNFEWVAERV 256
Query: 434 A-SVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKR 492
+K + VV+ GS+SDL KI A + E L + DE +K
Sbjct: 257 ELLLKSESQCRVVVLXGSTSDLGHCEKIKKACGNFGIPCE--LRVTSAHKGPDETLRIK- 313
Query: 493 LSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPL--DSTGRDVW 550
+E G VF+AVAG+SNGLGPV SGNT YPVI+CPPL D +DVW
Sbjct: 314 ---AEYE-------GDGIPTVFVAVAGRSNGLGPVXSGNTAYPVISCPPLTPDWGVQDVW 363
Query: 551 SSLNLPAGIACSTVTAPSNXXXXXXXXXXXRDFFIWSKLRMYQTKLYIALNKEDKKSRQE 610
SSL LP+G+ CSTV +P + +WSKLR +I+L + DKK R+
Sbjct: 364 SSLRLPSGLGCSTVLSPEGSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKIREC 423
Query: 611 N 611
N
Sbjct: 424 N 424
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 67/250 (26%)
Query: 10 NVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDI 69
N+G L EGKTK+++ L P V++ +KD+ITAG+ AR + L+GKA I+ K + +F +
Sbjct: 8 NIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQL 67
Query: 70 LNA-------SENVGD----------LLIEGKTKKIH----------------------- 89
L + G+ + IE ++I
Sbjct: 68 LQEAGIKTAFTRKCGETAFIAPQCEXIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVE 127
Query: 90 -LLKSDPNTVVVINKDRITAGDGARAHDLKGKAE--IATKTNTLVFDILNAA-------- 138
K D N +++++ A A L G+ E I + +F+IL +
Sbjct: 128 LFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTL 187
Query: 139 -----EMSMIKYSEE--------NEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQ 185
E + ++E N+ ++ P G + KDKQ YR+L VT EGL
Sbjct: 188 VDXKIEFGVDVTTKEIVLADVIDNDSWRLWPSGD---RSQQKDKQSYRDLKEVTPEGLQX 244
Query: 186 VKLNFTWIAD 195
VK NF W+A+
Sbjct: 245 VKKNFEWVAE 254
>pdb|2GQS|A Chain A, Saicar Synthetase Complexed With Cair-Mg2+ And Adp
pdb|2GQS|B Chain B, Saicar Synthetase Complexed With Cair-Mg2+ And Adp
Length = 237
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 181 EGLNQVKLNFTWIADTLASVKRPT--DNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKR 238
+G+ K N+ +I LA PT + L+S T L + + M+P+E V R A GS +KR
Sbjct: 46 KGMVNNKFNY-FIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKR 104
Query: 239 HPGTQECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEI 298
G +E PP + F K+DA HDP ++ V+++ + MK L+ ++
Sbjct: 105 L-GIEEGIELNPPLFDLFLKNDAMHDPMVNES--YCETFGWVSKENLARMKELTYKANDV 161
Query: 299 LEKVWASLNCVLVDMKIEFGI 319
L+K++ +LVD K+EFG+
Sbjct: 162 LKKLFDDAGLILVDFKLEFGL 182
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 345 SMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKD 404
+ YK ++L+K++ +LVD K+EFG+ +G +++ D D RLW + E M D
Sbjct: 153 ELTYKANDVLKKLFDDAGLILVDFKLEFGL-YKGEVVLGDEFSPDGSRLWDKETLEKM-D 210
Query: 405 KQVYRN 410
K +R
Sbjct: 211 KDRFRQ 216
>pdb|2YZL|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-
Succinocarboxamide Synthase With Adp From
Methanocaldococcus Jannaschii
pdb|2Z02|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolesuccinocarboxamide Synthase
Wit Atp From Methanocaldococcus Jannaschii
pdb|2Z02|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolesuccinocarboxamide Synthase
Wit Atp From Methanocaldococcus Jannaschii
Length = 242
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 208 VSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW 267
+ P +A+ V +IPIE + R +A GS +R+P +E P + +K+D DP
Sbjct: 80 IEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRYP-FEEGKELPFPIVQFDYKNDEYGDPML 138
Query: 268 SDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEG 323
+++ ++ L R+E+ +K ++L V E+L+K++ +LVD KIE G D EG
Sbjct: 139 NED--IAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREG 192
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 339 EVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGK 398
E++ + K+ E+L+K++ +LVD KIE G D EGN+LV+D I D+ RLW +
Sbjct: 153 ELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREGNLLVADEISPDTMRLWDKET 212
Query: 399 KELMKDKQVYR-NLSNVTAE 417
++++ DK V+R +L +V A+
Sbjct: 213 RDVL-DKDVFRKDLGDVIAK 231
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 80 LIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLK-GKAEIATKTNTLVFDIL--N 136
L GK K I+ + D + V++ +D ITAG+GA+ HD+K GK + ++ +F+ L N
Sbjct: 14 LYSGKAKSIYEI--DDDKVLIEFRDDITAGNGAK-HDVKQGKGYLNALISSKLFEALEEN 70
Query: 137 AAEMSMIKYSE 147
+ IKY E
Sbjct: 71 GVKTHYIKYIE 81
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 15 LIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLK-GKAEIATKTNTLVFDILN 71
L GK K I+ + D + V++ +D ITAG+GA+ HD+K GK + ++ +F+ L
Sbjct: 14 LYSGKAKSIYEI--DDDKVLIEFRDDITAGNGAK-HDVKQGKGYLNALISSKLFEALE 68
>pdb|2YWV|A Chain A, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
pdb|2YWV|B Chain B, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
Length = 244
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 64/247 (25%)
Query: 79 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138
LL EGK KKI+ +P+ + V KD TA +G + + GK + + ++L+F
Sbjct: 9 LLYEGKAKKIYA-TDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLF------ 61
Query: 139 EMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLA 198
+KL IA+
Sbjct: 62 -----------------------------------------------LKLREAGIANHFI 74
Query: 199 SVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFK 258
PT+ LV R VT+IP+E V R + GS KR G +E P E ++K
Sbjct: 75 EKLSPTEQLV-------RRVTIIPLEVVVRNVVAGSLAKR-IGLEEGTPLEAPLVEFYYK 126
Query: 259 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFG 318
+D DP ++ I L +R+EV +K+ +L V ++L +A N L+D K+EFG
Sbjct: 127 NDDLGDPLLLEDHIFILKL--ASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFG 184
Query: 319 IDNEGKV 325
+G +
Sbjct: 185 RTADGAI 191
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVF 67
LL EGK KKI+ +P+ + V KD TA +G + + GK + + ++L+F
Sbjct: 9 LLYEGKAKKIYA-TDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLF 61
>pdb|2GQR|A Chain A, Saicar Synthetase Complexed With Adp-Mg2+
pdb|2GQR|B Chain B, Saicar Synthetase Complexed With Adp-Mg2+
Length = 237
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 187 KLNFTWIADTLASVKRPT--DNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQE 244
K N+ +I LA PT + L+S T L + + +P+E V R A GS +KR G +E
Sbjct: 52 KFNY-FIXSKLAEAGIPTQXERLLSDTECLVKKLDXVPVECVVRNRAAGSLVKRL-GIEE 109
Query: 245 CYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWA 304
PP + F K+DA HDP ++ V+++ + K L+ ++L+K++
Sbjct: 110 GIELNPPLFDLFLKNDAXHDPXVNES--YCETFGWVSKENLARXKELTYKANDVLKKLFD 167
Query: 305 SLNCVLVDMKIEFGI 319
+LVD K+EFG+
Sbjct: 168 DAGLILVDFKLEFGL 182
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 345 SMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMK- 403
+ YK ++L+K++ +LVD K+EFG+ +G +++ D D RLW K+ L K
Sbjct: 153 ELTYKANDVLKKLFDDAGLILVDFKLEFGL-YKGEVVLGDEFSPDGSRLWD--KETLEKX 209
Query: 404 DKQVYRN 410
DK +R
Sbjct: 210 DKDRFRQ 216
>pdb|3U55|A Chain A, Crystal Structure (Type-2) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
Length = 238
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 213 FLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWSDEQI 272
+ + M P+E V R + GS KR P E Y P E ++K+D HDP +
Sbjct: 78 LIVEKLDMYPLEVVVRNVVAGSLKKRLP-LPEGYELPEPIVELYYKNDELHDPMIN---Y 133
Query: 273 LSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
A + ++ DE++ ++ ++L V EIL+ A +LVD K+EFG D G +
Sbjct: 134 YHAKVLGISLDEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDI 186
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 339 EVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGK 398
E+ + K+ EIL+ A +LVD K+EFG D G+I+++D I D+ R W + K
Sbjct: 145 EIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFW-DAK 203
Query: 399 KELMKDKQVYR 409
+ DK V+R
Sbjct: 204 TKRSLDKDVFR 214
>pdb|3U54|A Chain A, Crystal Structure (Type-1) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
pdb|3U54|B Chain B, Crystal Structure (Type-1) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
Length = 238
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 213 FLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWSDEQI 272
+ + P+E V R + GS KR P E Y P E ++K+D HDP +
Sbjct: 78 LIVEKLDXYPLEVVVRNVVAGSLKKRLP-LPEGYELPEPIVELYYKNDELHDPXIN---Y 133
Query: 273 LSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
A + ++ DE++ ++ ++L V EIL+ A +LVD K+EFG D G +
Sbjct: 134 YHAKVLGISLDEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDI 186
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 339 EVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGK 398
E+ + K+ EIL+ A +LVD K+EFG D G+I+++D I D+ R W + K
Sbjct: 145 EIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFW-DAK 203
Query: 399 KELMKDKQVYR 409
+ DK V+R
Sbjct: 204 TKRSLDKDVFR 214
>pdb|3KRE|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-succinocarboxamide Synthase
From Ehrlichia Chaffeensis At 1.8a Resolution
Length = 263
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 214 LARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWSDEQIL 273
L + +T+IPIE V R LA G++ KR + F P E ++K+D DP S+ IL
Sbjct: 101 LVKKITIIPIEVVIRNLAAGNFSKRFQ-IADGTPFKSPIIEFYYKNDELSDPMVSEGHIL 159
Query: 274 SANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFG 318
S + E++ +K LSL + IL +++ ++ LVD K+EFG
Sbjct: 160 S--FQWLTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFG 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 339 EVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGI---DNEGNILVSDVIDSDSWRLWP 395
E+ + K+ IL +++ ++ LVD K+EFG D + ++ ++D I D+ RLW
Sbjct: 168 ELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGKLHNDEQSDLFLADEISPDTCRLWD 227
Query: 396 EGKKELMKDKQVYR-NLSNVTAEGLNQV--KLN 425
+ + DK YR NL NV EG +V KLN
Sbjct: 228 ISTNKRL-DKDRYRLNLGNVI-EGYREVAHKLN 258
>pdb|3NUA|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
pdb|3NUA|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
Length = 238
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 59/201 (29%)
Query: 214 LARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWSDEQIL 273
L + V ++P+E + R +A GS KR G +E Y E +KDD+ DP +D +
Sbjct: 84 LCKKVEIVPLEVIVRNVAAGSMAKR-LGLEEGYELKTTVFELSYKDDSLGDPLINDYHAV 142
Query: 274 SANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPM 333
+ FE L K++
Sbjct: 143 G----------------IGATTFEELNKIY------------------------------ 156
Query: 334 KLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRL 393
+ K+ EIL++ + N L+D K+EFG N G IL++D I D+ R
Sbjct: 157 -----------EITAKVNEILKEAFKKQNINLIDFKLEFGRYN-GEILLADEISPDTCRF 204
Query: 394 WPEGKKELMKDKQVYRNLSNV 414
W E M + R++ NV
Sbjct: 205 WDATTGEKMDKDRFRRDMGNV 225
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 71 NASENVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTL 130
NA N ++L EGK KKI+ + + V+V KD TA +G + ++ K + + +L
Sbjct: 2 NAMVNQLEMLYEGKAKKIYATDKE-DMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSL 60
Query: 131 VFDILN 136
+F++LN
Sbjct: 61 IFEMLN 66
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 13 DLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNA 72
++L EGK KKI+ + + V+V KD TA +G + ++ K + + +L+F++LN
Sbjct: 9 EMLYEGKAKKIYATDKE-DMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLN- 66
Query: 73 SENVGDLLIEGKTKKIHLLKS---DPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNT 129
E + +E + L K P V+V N + AG A+ L+ E+ T
Sbjct: 67 KEGIKTHFVEKLNDRDQLCKKVEIVPLEVIVRN---VAAGSMAKRLGLEEGYELKTTVFE 123
Query: 130 LVF 132
L +
Sbjct: 124 LSY 126
>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|B Chain B, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|C Chain C, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|D Chain D, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|E Chain E, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|F Chain F, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|G Chain G, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|H Chain H, Crystal Structure Of Treponema Denticola Pure
Length = 159
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEIL 501
LV++ +GSSSD+ A KI A+ + E I + A V ++K +E L
Sbjct: 4 LVIILMGSSSDMGHAEKI--ASELKTFGIEYAIRIGSAHKTAEHVVSMLKE-----YEAL 56
Query: 502 VMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDST--GRDVWSSLNLPAGI 559
+ ++I +AG+SN L + G I CPP + G D++SSL +P+GI
Sbjct: 57 -------DRPKLYITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGI 109
Query: 560 ACSTVTAPSN 569
+ + V P N
Sbjct: 110 SPALVLEPKN 119
>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|B Chain B, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|C Chain C, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|D Chain D, Crystal Structure Of Treponema Denticola Pure Bound To Air
Length = 159
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEIL 501
LV++ +GSSSD+ A KI A+ + E I + A V ++K +E L
Sbjct: 4 LVIILMGSSSDMGHAEKI--ASELKTFGIEYAIRIGSAHKTAEHVVSMLKE-----YEAL 56
Query: 502 VMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDST--GRDVWSSLNLPAGI 559
+ ++I +AG+SN L + G I CPP + G D++SSL +P+GI
Sbjct: 57 -------DRPKLYITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGI 109
Query: 560 ACSTVTAPSN 569
+ + V P N
Sbjct: 110 SPALVLEPKN 119
>pdb|1KUT|A Chain A, Structural Genomics, Protein Tm1243, (Saicar Synthetase)
pdb|1KUT|B Chain B, Structural Genomics, Protein Tm1243, (Saicar Synthetase)
Length = 230
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 208 VSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW 267
+ P + P+E V R GS+++R+ G E P E F KDD HDP
Sbjct: 67 IPPRTLKVIPLKXFPLEVVVRLKKAGSFVRRYGGA-EGEDLPVPLVEFFIKDDERHDPXV 125
Query: 268 SDE--QILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
+ +IL A + +++L + E E+ N L D+K EFG+D +G V
Sbjct: 126 CVDHLEILGIATKKQAEKXKEAAVKITLALKEFFERA----NFELWDIKYEFGLDKDGNV 181
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 354 LEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRN 410
L++ + N L D+K EFG+D +GN+++ D I D++RL +G+ + DK VYR
Sbjct: 155 LKEFFERANFELWDIKYEFGLDKDGNVVLGDEISPDTFRLRKKGE---IFDKDVYRR 208
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 17 EGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENV 76
EGKTK ++K + ++ KD ITAGDG + L GK I +T ++ L + + +
Sbjct: 4 EGKTK---IVKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILXKYL-SEKGI 59
Query: 77 GDLLIE---GKTKKIHLLKSDPNTVVV 100
L+E +T K+ LK P VVV
Sbjct: 60 KTHLVEYIPPRTLKVIPLKXFPLEVVV 86
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 82 EGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN--AAE 139
EGKTK ++K + ++ KD ITAGDG + L GK I +T ++ L+ +
Sbjct: 4 EGKTK---IVKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILXKYLSEKGIK 60
Query: 140 MSMIKYSEENEYDKIPP 156
+++Y IPP
Sbjct: 61 THLVEY--------IPP 69
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 481 NVARDEVQIMKRLSLVVFEILVMKSWSSGKNV----------VFIAVAGKSNGLGPVISG 530
+A V I+K V FE+ V + + + V VFIA+AG + L V++
Sbjct: 13 KIAEKAVNILKEFG-VEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVAS 71
Query: 531 NTCYPVINCPPLDST--GRD-VWSSLNLPAGIACSTVTA--PSNXXXXXXXXXXXRDFFI 585
T PVI P+D+ G D + SS+ +P GI +TV N +D I
Sbjct: 72 LTTKPVIAV-PVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENI 130
Query: 586 WSKLRMYQTKLYIALNKEDKKSRQ 609
KL Y+ K+ + D+K ++
Sbjct: 131 AKKLIEYREKMKKKVYASDEKVKE 154
>pdb|3R9R|A Chain A, Structure Of A
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 301
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 362 NCVLVDMKIEFGIDNEGNILVSD-VIDSDSWRLW-----PEGKKELMKDKQVYRN 410
+L D K EFG+D EGN++++D V DS R W G + DKQ RN
Sbjct: 195 GIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQPGVVQDSFDKQFVRN 249
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 25/130 (19%)
Query: 213 FLARNVTMIPIEWVTRRLATGSYLKRHP------------GTQECYRFCPPCQETFFKDD 260
L R + M+P+E V R TGS L + G E R PP K D
Sbjct: 92 LLVRRLDMLPVECVARGYLTGSGLLDYQRTGAVCGHVLPQGLGEASRLDPPLFTPATKAD 151
Query: 261 -ANHDPQWSDEQILS---ANLDNVARDE-VQIMKRLSLVVFEILEKVWASLNCVLVDMKI 315
HD ++ A N RDE ++I R + L K +L D K
Sbjct: 152 IGEHDMNVDFAAVVGLVGAVRANQLRDETIKIYTRAAA---HALHK-----GIILADTKF 203
Query: 316 EFGIDNEGKV 325
EFG+D EG +
Sbjct: 204 EFGVDIEGNL 213
>pdb|1A48|A Chain A, Saicar Synthase
pdb|2CNQ|A Chain A, Atomic Resolution Structure Of Saicar-Synthase From
Saccharomyces Cerevisiae Complexed With Adp, Aicar,
Succinate
pdb|2CNU|A Chain A, Atomic Resolution Structure Of Saicar-Synthase From
Saccharomyces Cerevisiae Complexed With Aspartic Acid
pdb|2CNV|A Chain A, Saicar-Synthase From Saccharomyces Cerevisiae Complexed
Saicar
pdb|1OBD|A Chain A, Saicar-Synthase Complexed With Atp
Length = 306
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 362 NCVLVDMKIEFGIDNEGN--ILVSDVIDSDSWRLW-----PEGKKELMKDKQVYRN-LSN 413
++ D K EFGID + N ILV +V+ DS R W G+ + DKQ R+ L+
Sbjct: 210 GIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGASYKVGESQDSYDKQFLRDWLTA 269
Query: 414 VTAEGLNQVKL 424
G+N VK+
Sbjct: 270 NKLNGVNGVKM 280
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 213 FLARNVTMIPIEWVTRRLATGSY------------LKRHPGTQECYRFCPPCQETFFK-D 259
L +IP+E + R TGS LK+ G +E F P K +
Sbjct: 107 LLVHKHKLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAE 166
Query: 260 DANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGI 319
HD S Q +A L V D + + L++ ++ + ++ D K EFGI
Sbjct: 167 QGEHDENISPAQ--AAEL--VGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGI 222
Query: 320 DNE 322
D +
Sbjct: 223 DEK 225
>pdb|1OBG|A Chain A, Saicar-Synthase Complexed With Atp
Length = 305
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 362 NCVLVDMKIEFGIDNEGN--ILVSDVIDSDSWRLW-----PEGKKELMKDKQVYRN-LSN 413
++ D K EFGID + N ILV +V+ DS R W G+ + DKQ R+ L+
Sbjct: 209 GIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGASYKVGESQDSYDKQFLRDWLTA 268
Query: 414 VTAEGLNQVKL 424
G+N VK+
Sbjct: 269 NKLNGVNGVKM 279
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 213 FLARNVTMIPIEWVTRRLATGSY------------LKRHPGTQECYRFCPPCQETFFK-D 259
L +IP+E + R TGS LK+ G +E F P K +
Sbjct: 106 LLVHKHKLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAE 165
Query: 260 DANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGI 319
HD S Q +A L V D + + L++ ++ + ++ D K EFGI
Sbjct: 166 QGEHDENISPAQ--AAEL--VGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGI 221
Query: 320 DNE 322
D +
Sbjct: 222 DEK 224
>pdb|3TEW|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.45-A Resolution
pdb|3TEX|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.7-A Resolution
Length = 715
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 354 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 409
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 374 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 429
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 374 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 429
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 374 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 429
>pdb|3KWV|A Chain A, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|B Chain B, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|D Chain D, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|E Chain E, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 548
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 187 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 242
>pdb|3HVD|A Chain A, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|B Chain B, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|C Chain C, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|D Chain D, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|E Chain E, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|F Chain F, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|G Chain G, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|H Chain H, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
Length = 548
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 187 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 242
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 375 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 430
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 354 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 409
>pdb|1TZN|A Chain A, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|B Chain B, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|C Chain C, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|D Chain D, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|E Chain E, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|F Chain F, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|G Chain G, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|H Chain H, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|I Chain I, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|J Chain J, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|K Chain K, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|L Chain L, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|M Chain M, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|O Chain O, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZO|A Chain A, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|B Chain B, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|C Chain C, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|D Chain D, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|E Chain E, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|F Chain F, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|G Chain G, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|H Chain H, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|I Chain I, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|J Chain J, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|K Chain K, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|L Chain L, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|M Chain M, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|O Chain O, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
Length = 562
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 201 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 256
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 374 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 429
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552
++ +L S GKN + K N L +++ N YP N P+ +D +SS
Sbjct: 374 IYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSS 429
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 26 LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATK--TNTLVFDILNASENVGDLL 80
LK+ PN VV+ + R G G + +KG AE A+K ++T +F + + + LL
Sbjct: 286 LKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLL 342
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 116 DLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNL 175
DL G +E+ F+++N + K + + E+ +P G + R+ + +VY NL
Sbjct: 136 DLAGNSEVILPVPA--FNVINGGSHAGNKLAMQ-EFMILPVGAANFREAMRIGAEVYHNL 192
Query: 176 SNVTAE 181
NV E
Sbjct: 193 KNVIKE 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,147,198
Number of Sequences: 62578
Number of extensions: 749595
Number of successful extensions: 1536
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 97
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)