Query psy246
Match_columns 615
No_of_seqs 388 out of 2664
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 16:50:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01416 SAICAR_synt_Ade5 Ade5_ 100.0 2.1E-67 4.6E-72 532.2 24.9 246 9-434 1-251 (252)
2 PRK09362 phosphoribosylaminoim 100.0 5.4E-65 1.2E-69 511.9 25.3 235 9-435 1-235 (238)
3 cd01415 SAICAR_synt_PurC bacte 100.0 8.6E-65 1.9E-69 508.0 24.2 229 14-434 1-229 (230)
4 cd00476 SAICAR_synt 5-aminoimi 100.0 1.8E-61 3.9E-66 484.4 23.6 229 14-434 1-230 (230)
5 TIGR00081 purC phosphoribosyla 100.0 2.8E-61 6E-66 484.6 23.4 232 8-430 2-236 (237)
6 COG0152 PurC Phosphoribosylami 100.0 6.5E-60 1.4E-64 474.6 21.7 234 11-435 3-236 (247)
7 PRK13961 phosphoribosylaminoim 100.0 1E-57 2.2E-62 470.8 21.0 248 13-434 13-291 (296)
8 cd01414 SAICAR_synt_Sc non-met 100.0 6E-57 1.3E-61 462.7 22.0 225 14-412 1-243 (279)
9 PRK12607 phosphoribosylaminoim 100.0 1.7E-56 3.8E-61 463.7 22.4 238 12-435 15-288 (313)
10 PF01259 SAICAR_synt: SAICAR s 100.0 4.5E-57 9.7E-62 457.4 13.5 232 13-434 2-245 (248)
11 PLN02544 phosphoribosylaminoim 100.0 2.1E-54 4.6E-59 454.4 22.4 236 12-435 75-350 (370)
12 PRK13960 phosphoribosylaminoim 100.0 1.7E-52 3.6E-57 440.2 21.8 249 6-435 13-342 (367)
13 PRK13959 phosphoribosylaminoim 100.0 3.7E-49 8E-54 412.8 22.1 223 17-413 1-271 (341)
14 COG0041 PurE Phosphoribosylcar 100.0 1.3E-48 2.8E-53 365.9 16.4 152 443-609 4-161 (162)
15 TIGR01162 purE phosphoribosyla 100.0 2.6E-48 5.7E-53 367.9 15.5 150 444-608 1-156 (156)
16 TIGR02735 purC_vibrio phosphor 100.0 1E-47 2.2E-52 403.9 19.7 243 78-435 19-341 (365)
17 PLN02948 phosphoribosylaminoim 100.0 1.6E-46 3.5E-51 419.1 23.2 324 244-609 217-569 (577)
18 KOG2835|consensus 100.0 2E-47 4.3E-52 399.7 11.4 352 76-612 11-368 (373)
19 PF00731 AIRC: AIR carboxylase 100.0 8.6E-45 1.9E-49 342.8 13.0 144 442-600 1-150 (150)
20 COG1691 NCAIR mutase (PurE)-re 100.0 6.6E-29 1.4E-33 246.0 8.9 138 425-581 97-250 (254)
21 TIGR02735 purC_vibrio phosphor 99.9 1.7E-26 3.7E-31 243.7 9.3 147 11-157 17-273 (365)
22 cd01416 SAICAR_synt_Ade5 Ade5_ 99.9 9.6E-23 2.1E-27 207.3 4.7 120 74-197 91-250 (252)
23 COG0152 PurC Phosphoribosylami 99.9 3.1E-22 6.7E-27 202.4 4.8 111 74-189 90-234 (247)
24 cd01415 SAICAR_synt_PurC bacte 99.8 1.3E-21 2.9E-26 196.9 4.1 109 74-187 85-226 (230)
25 PRK09362 phosphoribosylaminoim 99.8 2.9E-21 6.4E-26 195.3 4.6 106 74-184 90-228 (238)
26 KOG2835|consensus 99.8 2.4E-20 5.2E-25 196.6 9.7 290 10-544 10-323 (373)
27 TIGR00081 purC phosphoribosyla 99.8 4.2E-20 9.2E-25 186.8 3.3 108 74-186 92-236 (237)
28 cd00476 SAICAR_synt 5-aminoimi 99.7 5.9E-19 1.3E-23 177.9 3.4 109 74-187 84-227 (230)
29 PF01259 SAICAR_synt: SAICAR s 99.7 5.4E-18 1.2E-22 172.7 0.2 114 74-187 85-242 (248)
30 PRK13961 phosphoribosylaminoim 99.6 3.3E-16 7.1E-21 163.0 1.7 97 74-174 109-255 (296)
31 cd01414 SAICAR_synt_Sc non-met 99.6 7.6E-16 1.7E-20 159.3 2.5 98 74-173 96-240 (279)
32 PRK12607 phosphoribosylaminoim 99.6 1.1E-15 2.4E-20 159.8 2.5 99 74-174 98-251 (313)
33 PLN02544 phosphoribosylaminoim 99.5 1.9E-14 4.2E-19 152.9 2.4 98 74-174 157-312 (370)
34 PRK13960 phosphoribosylaminoim 99.3 3.6E-13 7.7E-18 143.4 2.4 85 74-158 128-275 (367)
35 PRK13959 phosphoribosylaminoim 99.1 1.8E-11 4E-16 129.7 2.7 118 49-174 94-268 (341)
36 COG0026 PurK Phosphoribosylami 96.6 0.00094 2E-08 72.3 2.0 150 243-420 193-353 (375)
37 cd08170 GlyDH Glycerol dehydro 96.0 0.029 6.3E-07 59.9 9.1 88 442-544 23-112 (351)
38 PRK00843 egsA NAD(P)-dependent 95.6 0.041 8.9E-07 59.1 8.3 86 442-543 35-121 (350)
39 cd08550 GlyDH-like Glycerol_de 95.5 0.034 7.3E-07 59.5 7.1 88 442-544 23-112 (349)
40 cd08171 GlyDH-like2 Glycerol d 95.3 0.056 1.2E-06 57.8 8.0 88 442-544 23-113 (345)
41 PRK09423 gldA glycerol dehydro 95.0 0.097 2.1E-06 56.4 8.9 88 442-544 30-119 (366)
42 cd08551 Fe-ADH iron-containing 95.0 0.062 1.3E-06 57.7 7.4 88 442-544 24-133 (370)
43 cd08185 Fe-ADH1 Iron-containin 94.9 0.081 1.8E-06 57.2 8.0 88 442-544 26-141 (380)
44 cd08173 Gro1PDH Sn-glycerol-1- 94.3 0.16 3.5E-06 54.1 8.5 87 442-544 26-113 (339)
45 cd08182 HEPD Hydroxyethylphosp 94.3 0.14 3E-06 55.1 8.1 86 442-544 24-134 (367)
46 cd08194 Fe-ADH6 Iron-containin 94.2 0.16 3.5E-06 54.9 8.3 88 442-544 24-133 (375)
47 cd08193 HVD 5-hydroxyvalerate 94.2 0.11 2.3E-06 56.3 6.8 88 442-544 27-136 (376)
48 cd08187 BDH Butanol dehydrogen 94.1 0.12 2.6E-06 56.1 7.2 88 442-544 29-139 (382)
49 cd08186 Fe-ADH8 Iron-containin 94.1 0.12 2.5E-06 56.2 7.0 87 442-543 27-137 (383)
50 cd07766 DHQ_Fe-ADH Dehydroquin 94.0 0.12 2.5E-06 54.6 6.6 87 442-544 24-115 (332)
51 TIGR01357 aroB 3-dehydroquinat 94.0 0.18 3.9E-06 53.8 8.1 86 442-542 21-116 (344)
52 cd08175 G1PDH Glycerol-1-phosp 93.9 0.13 2.8E-06 55.0 6.9 87 442-544 24-115 (348)
53 cd08199 EEVS 2-epi-5-epi-valio 93.8 0.52 1.1E-05 51.1 11.2 86 442-542 27-123 (354)
54 cd08183 Fe-ADH2 Iron-containin 93.7 0.24 5.2E-06 53.6 8.5 86 442-544 23-132 (374)
55 cd08195 DHQS Dehydroquinate sy 93.6 0.24 5.3E-06 53.0 8.3 86 442-542 25-120 (345)
56 cd08176 LPO Lactadehyde:propan 93.5 0.13 2.9E-06 55.6 6.2 87 443-544 30-138 (377)
57 cd08192 Fe-ADH7 Iron-containin 93.2 0.22 4.8E-06 53.6 7.2 88 442-544 25-138 (370)
58 TIGR02638 lactal_redase lactal 93.1 0.24 5.3E-06 53.7 7.4 87 443-544 31-141 (379)
59 cd08177 MAR Maleylacetate redu 93.0 0.23 4.9E-06 53.0 6.8 86 443-544 25-112 (337)
60 PRK00002 aroB 3-dehydroquinate 92.9 0.57 1.2E-05 50.5 9.7 87 442-543 32-128 (358)
61 PRK09860 putative alcohol dehy 92.8 0.29 6.3E-06 53.3 7.4 88 442-544 32-141 (383)
62 cd08181 PPD-like 1,3-propanedi 92.6 0.21 4.5E-06 53.8 6.0 88 442-544 26-135 (357)
63 cd08172 GlyDH-like1 Glycerol d 92.6 0.19 4E-06 53.8 5.6 87 442-544 24-111 (347)
64 cd08549 G1PDH_related Glycerol 92.6 0.25 5.4E-06 52.7 6.5 88 442-543 25-114 (332)
65 cd08189 Fe-ADH5 Iron-containin 92.6 0.18 4E-06 54.5 5.6 88 442-544 27-137 (374)
66 cd08178 AAD_C C-terminal alcoh 92.5 0.23 4.9E-06 54.3 6.1 66 442-522 22-90 (398)
67 PRK10586 putative oxidoreducta 92.1 0.55 1.2E-05 51.0 8.5 100 425-544 21-121 (362)
68 COG0371 GldA Glycerol dehydrog 92.1 0.33 7.1E-06 53.0 6.7 101 442-557 31-135 (360)
69 cd08191 HHD 6-hydroxyhexanoate 92.0 0.45 9.7E-06 51.8 7.7 87 442-544 23-132 (386)
70 PRK15454 ethanol dehydrogenase 91.9 0.24 5.3E-06 54.2 5.6 87 443-544 51-159 (395)
71 cd08174 G1PDH-like Glycerol-1- 91.8 0.37 8E-06 51.2 6.7 83 442-544 26-110 (331)
72 cd08179 NADPH_BDH NADPH-depend 91.8 0.38 8.3E-06 52.1 6.9 88 442-544 24-137 (375)
73 cd08197 DOIS 2-deoxy-scyllo-in 91.2 3.7 8E-05 44.6 13.5 88 442-543 24-120 (355)
74 PRK10624 L-1,2-propanediol oxi 91.1 0.62 1.3E-05 50.6 7.6 87 443-544 32-142 (382)
75 cd08180 PDD 1,3-propanediol de 90.8 0.57 1.2E-05 49.9 6.8 87 442-544 23-120 (332)
76 cd08169 DHQ-like Dehydroquinat 90.7 0.56 1.2E-05 50.6 6.7 85 442-542 24-118 (344)
77 PF13685 Fe-ADH_2: Iron-contai 90.4 0.28 6E-06 51.0 4.0 137 442-591 20-180 (250)
78 cd08188 Fe-ADH4 Iron-containin 90.2 0.51 1.1E-05 51.2 5.9 88 442-544 29-138 (377)
79 PF00465 Fe-ADH: Iron-containi 89.8 0.28 6E-06 52.7 3.5 87 443-544 23-132 (366)
80 cd08190 HOT Hydroxyacid-oxoaci 89.6 0.9 1.9E-05 50.1 7.3 67 442-523 24-93 (414)
81 PRK15138 aldehyde reductase; P 89.0 0.69 1.5E-05 50.6 5.8 64 442-522 30-97 (387)
82 PRK06019 phosphoribosylaminoim 88.6 0.53 1.2E-05 50.8 4.6 77 280-369 221-299 (372)
83 PRK14021 bifunctional shikimat 88.3 1.9 4.2E-05 49.3 9.0 90 443-542 211-304 (542)
84 COG3199 Predicted inorganic po 87.8 2.1 4.5E-05 46.7 8.3 91 464-580 65-157 (355)
85 PRK00286 xseA exodeoxyribonucl 87.2 16 0.00034 40.6 15.1 50 414-465 98-157 (438)
86 cd08196 DHQS-like1 Dehydroquin 85.7 2.1 4.6E-05 46.4 7.1 85 442-543 20-112 (346)
87 COG1454 EutG Alcohol dehydroge 85.6 2.5 5.4E-05 46.6 7.6 88 442-544 30-139 (377)
88 TIGR00237 xseA exodeoxyribonuc 84.9 25 0.00053 39.4 15.1 50 414-465 92-151 (432)
89 PRK13805 bifunctional acetalde 83.9 2.3 5E-05 51.2 7.1 66 442-522 481-551 (862)
90 cd08184 Fe-ADH3 Iron-containin 81.9 4.1 8.8E-05 44.2 7.3 86 443-544 27-134 (347)
91 PF02222 ATP-grasp: ATP-grasp 80.7 1.4 2.9E-05 43.4 2.9 83 244-343 87-172 (172)
92 TIGR03405 Phn_Fe-ADH phosphona 79.7 3.6 7.9E-05 44.4 6.1 85 442-544 24-137 (355)
93 TIGR01161 purK phosphoribosyla 77.8 2.8 6.1E-05 44.7 4.5 78 280-370 219-298 (352)
94 PRK00696 sucC succinyl-CoA syn 77.2 73 0.0016 34.8 15.2 119 441-578 256-385 (388)
95 PRK06203 aroB 3-dehydroquinate 76.1 7.7 0.00017 42.8 7.3 92 442-542 43-146 (389)
96 PF00532 Peripla_BP_1: Peripla 76.0 43 0.00093 34.6 12.5 129 442-598 2-147 (279)
97 PLN02834 3-dehydroquinate synt 74.2 9.5 0.00021 42.7 7.6 87 442-542 101-198 (433)
98 cd06305 PBP1_methylthioribose_ 72.3 33 0.00072 33.8 10.2 81 443-539 1-86 (273)
99 PRK10017 colanic acid biosynth 72.2 58 0.0013 36.5 13.1 81 450-558 289-370 (426)
100 cd06283 PBP1_RegR_EndR_KdgR_li 71.8 55 0.0012 32.0 11.5 108 444-579 2-113 (267)
101 cd01537 PBP1_Repressors_Sugar_ 71.4 80 0.0017 30.3 12.4 82 444-542 2-88 (264)
102 PF06506 PrpR_N: Propionate ca 71.1 7.5 0.00016 37.8 5.2 82 483-580 18-101 (176)
103 PRK14569 D-alanyl-alanine synt 71.1 9.3 0.0002 40.0 6.3 82 442-544 4-93 (296)
104 PF13407 Peripla_BP_4: Peripla 70.9 53 0.0012 32.3 11.3 82 444-540 1-87 (257)
105 PRK01372 ddl D-alanine--D-alan 66.9 11 0.00025 38.9 5.8 77 443-541 6-90 (304)
106 COG1570 XseA Exonuclease VII, 66.8 1.7E+02 0.0036 33.4 15.0 125 413-557 97-251 (440)
107 COG1609 PurR Transcriptional r 66.2 1.9E+02 0.0041 30.9 15.6 132 440-598 57-203 (333)
108 TIGR00365 monothiol glutaredox 66.2 27 0.00058 30.9 7.2 32 441-472 11-45 (97)
109 TIGR01016 sucCoAbeta succinyl- 65.6 91 0.002 34.1 12.7 118 441-577 256-384 (386)
110 COG2515 Acd 1-aminocyclopropan 64.4 17 0.00036 39.4 6.5 36 508-544 179-218 (323)
111 cd03028 GRX_PICOT_like Glutare 63.7 23 0.0005 30.6 6.3 32 441-472 7-41 (90)
112 COG0337 AroB 3-dehydroquinate 63.6 23 0.00049 39.1 7.5 142 443-596 35-206 (360)
113 cd06275 PBP1_PurR Ligand-bindi 63.2 1.2E+02 0.0025 29.9 11.9 83 444-541 2-87 (269)
114 PF02601 Exonuc_VII_L: Exonucl 63.0 2E+02 0.0044 30.4 14.4 25 440-466 13-37 (319)
115 COG4126 Hydantoin racemase [Am 62.8 20 0.00044 37.2 6.5 83 443-538 111-202 (230)
116 PRK09526 lacI lac repressor; R 62.3 1.4E+02 0.0031 30.8 12.9 131 441-597 63-208 (342)
117 cd06280 PBP1_LacI_like_4 Ligan 62.0 1.7E+02 0.0036 28.9 12.9 126 444-597 2-141 (263)
118 PRK14571 D-alanyl-alanine synt 61.9 12 0.00027 38.9 5.0 80 443-543 2-89 (299)
119 cd08198 DHQS-like2 Dehydroquin 60.1 28 0.0006 38.4 7.5 87 442-542 31-134 (369)
120 cd06320 PBP1_allose_binding Pe 57.7 74 0.0016 31.5 9.5 83 443-540 1-89 (275)
121 cd03786 GT1_UDP-GlcNAc_2-Epime 57.6 47 0.001 34.6 8.5 88 443-540 30-119 (363)
122 cd01541 PBP1_AraR Ligand-bindi 57.0 1.4E+02 0.003 29.6 11.3 109 444-579 2-118 (273)
123 cd05017 SIS_PGI_PMI_1 The memb 56.4 22 0.00048 32.0 5.1 63 473-553 48-110 (119)
124 cd06298 PBP1_CcpA_like Ligand- 56.0 1.7E+02 0.0036 28.7 11.6 107 444-578 2-112 (268)
125 PRK15424 propionate catabolism 55.8 44 0.00096 38.7 8.5 128 446-594 17-153 (538)
126 TIGR00147 lipid kinase, YegS/R 55.5 34 0.00074 35.4 6.9 83 443-543 3-93 (293)
127 PF01297 TroA: Periplasmic sol 55.5 36 0.00078 34.6 7.0 68 463-542 163-231 (256)
128 PRK10423 transcriptional repre 54.8 2.5E+02 0.0055 28.7 13.1 84 441-539 56-142 (327)
129 PRK10076 pyruvate formate lyas 53.6 47 0.001 33.7 7.4 70 403-479 100-169 (213)
130 PRK11914 diacylglycerol kinase 53.0 39 0.00085 35.4 7.0 82 442-541 9-96 (306)
131 cd06300 PBP1_ABC_sugar_binding 52.9 1.1E+02 0.0023 30.3 9.8 83 443-540 1-92 (272)
132 cd03027 GRX_DEP Glutaredoxin ( 52.9 87 0.0019 25.5 7.6 28 443-472 2-29 (73)
133 TIGR00236 wecB UDP-N-acetylglu 52.3 36 0.00078 36.0 6.6 83 442-539 30-116 (365)
134 PRK13055 putative lipid kinase 51.2 37 0.00081 36.3 6.6 75 449-541 14-93 (334)
135 PRK10481 hypothetical protein; 50.7 60 0.0013 33.6 7.6 82 441-538 129-211 (224)
136 PF04392 ABC_sub_bind: ABC tra 50.2 39 0.00085 35.1 6.4 83 443-542 1-90 (294)
137 cd06273 PBP1_GntR_like_1 This 49.3 2.3E+02 0.005 27.8 11.4 78 444-539 2-84 (268)
138 cd06281 PBP1_LacI_like_5 Ligan 49.2 1.6E+02 0.0035 29.1 10.4 79 444-539 2-85 (269)
139 TIGR01481 ccpA catabolite cont 49.2 3E+02 0.0066 28.2 12.7 131 441-598 59-205 (329)
140 KOG3857|consensus 48.8 35 0.00076 37.8 5.8 86 443-544 72-186 (465)
141 PRK14046 malate--CoA ligase su 48.8 4.2E+02 0.0091 29.5 15.8 197 347-579 177-386 (392)
142 PF00148 Oxidored_nitro: Nitro 47.7 1.8E+02 0.0039 31.5 11.2 103 421-544 123-227 (398)
143 cd01574 PBP1_LacI Ligand-bindi 47.6 2.8E+02 0.0061 27.1 12.4 29 444-472 2-33 (264)
144 cd06321 PBP1_ABC_sugar_binding 46.4 1.7E+02 0.0038 28.8 10.1 82 444-540 2-89 (271)
145 TIGR03702 lip_kinase_YegS lipi 46.1 1.1E+02 0.0024 31.9 9.0 80 445-543 4-90 (293)
146 cd01391 Periplasmic_Binding_Pr 45.8 1.7E+02 0.0036 27.6 9.5 83 444-541 2-90 (269)
147 PRK10653 D-ribose transporter 45.4 2.4E+02 0.0052 28.6 11.2 84 441-540 26-114 (295)
148 PRK01966 ddl D-alanyl-alanine 45.3 33 0.00072 36.5 5.1 31 442-472 4-39 (333)
149 TIGR02329 propionate_PrpR prop 45.1 41 0.00089 38.8 6.0 85 505-594 50-143 (526)
150 cd06290 PBP1_LacI_like_9 Ligan 45.0 2.9E+02 0.0063 27.1 11.4 107 444-579 2-112 (265)
151 cd06274 PBP1_FruR Ligand bindi 44.8 2.8E+02 0.006 27.3 11.2 107 444-579 2-113 (264)
152 cd06310 PBP1_ABC_sugar_binding 44.5 1.7E+02 0.0037 28.8 9.7 82 443-539 1-88 (273)
153 cd06267 PBP1_LacI_sugar_bindin 44.0 3E+02 0.0065 26.4 11.9 81 444-540 2-85 (264)
154 cd06318 PBP1_ABC_sugar_binding 44.0 2.6E+02 0.0057 27.7 11.0 81 443-539 1-86 (282)
155 PRK13337 putative lipid kinase 43.5 44 0.00095 35.1 5.6 65 449-532 13-78 (304)
156 cd01575 PBP1_GntR Ligand-bindi 43.5 2.8E+02 0.006 27.0 10.9 78 444-539 2-84 (268)
157 cd06311 PBP1_ABC_sugar_binding 43.3 3.1E+02 0.0068 27.1 11.4 81 444-539 2-91 (274)
158 TIGR02417 fruct_sucro_rep D-fr 43.2 3.9E+02 0.0084 27.5 16.5 130 441-598 60-206 (327)
159 PRK14572 D-alanyl-alanine synt 42.7 25 0.00054 37.7 3.7 100 443-544 3-125 (347)
160 TIGR03568 NeuC_NnaA UDP-N-acet 42.5 61 0.0013 35.1 6.6 33 506-539 90-123 (365)
161 cd06292 PBP1_LacI_like_10 Liga 42.5 2.7E+02 0.0059 27.4 10.8 110 444-578 2-118 (273)
162 PRK13951 bifunctional shikimat 42.4 32 0.00069 39.2 4.6 51 477-542 216-272 (488)
163 cd06301 PBP1_rhizopine_binding 42.4 2.9E+02 0.0062 27.2 10.9 27 444-471 2-33 (272)
164 PRK13054 lipid kinase; Reviewe 41.3 85 0.0019 32.9 7.3 72 443-532 5-77 (300)
165 cd06302 PBP1_LsrB_Quorum_Sensi 40.9 1.7E+02 0.0038 29.8 9.4 82 443-539 1-87 (298)
166 cd06296 PBP1_CatR_like Ligand- 40.9 3.6E+02 0.0078 26.4 11.6 78 444-539 2-84 (270)
167 cd01542 PBP1_TreR_like Ligand- 40.5 3.6E+02 0.0077 26.3 11.3 78 444-539 2-84 (259)
168 cd01545 PBP1_SalR Ligand-bindi 40.2 3.7E+02 0.0079 26.3 12.5 29 444-472 2-33 (270)
169 cd01536 PBP1_ABC_sugar_binding 38.9 3E+02 0.0065 26.6 10.3 82 443-540 1-87 (267)
170 cd06294 PBP1_ycjW_transcriptio 38.7 3.9E+02 0.0084 26.1 11.6 96 455-578 21-118 (270)
171 cd07943 DRE_TIM_HOA 4-hydroxy- 38.6 1E+02 0.0022 31.9 7.2 66 446-526 103-169 (263)
172 cd06273 PBP1_GntR_like_1 This 38.5 2E+02 0.0044 28.2 9.1 32 441-472 116-151 (268)
173 TIGR02717 AcCoA-syn-alpha acet 38.0 3.1E+02 0.0067 30.9 11.4 132 443-591 178-335 (447)
174 COG2984 ABC-type uncharacteriz 37.9 1E+02 0.0022 33.7 7.3 80 443-539 32-115 (322)
175 KOG0091|consensus 37.6 1.4E+02 0.0029 30.3 7.5 105 392-503 61-178 (213)
176 cd06308 PBP1_sensor_kinase_lik 37.5 3.8E+02 0.0081 26.5 10.9 81 443-539 1-87 (270)
177 TIGR01205 D_ala_D_alaTIGR D-al 37.3 66 0.0014 33.4 5.7 90 443-543 1-99 (315)
178 cd06299 PBP1_LacI_like_13 Liga 36.6 4.2E+02 0.009 25.9 11.5 58 444-516 2-62 (265)
179 COG0075 Serine-pyruvate aminot 36.4 1.7E+02 0.0038 32.6 8.9 108 441-565 80-207 (383)
180 TIGR01506 ribC_arch riboflavin 36.0 60 0.0013 31.8 4.7 106 444-581 2-130 (151)
181 PLN02958 diacylglycerol kinase 35.6 3.5E+02 0.0077 30.9 11.5 74 441-532 111-189 (481)
182 PRK10703 DNA-binding transcrip 35.5 5.2E+02 0.011 26.7 12.5 80 442-539 60-145 (341)
183 COG0859 RfaF ADP-heptose:LPS h 35.5 90 0.0019 33.3 6.5 87 423-543 194-280 (334)
184 cd06289 PBP1_MalI_like Ligand- 35.2 4.3E+02 0.0094 25.7 11.2 79 444-539 2-85 (268)
185 PF00462 Glutaredoxin: Glutare 35.0 1.3E+02 0.0028 23.5 5.8 21 452-472 7-27 (60)
186 cd01539 PBP1_GGBP Periplasmic 34.9 1.5E+02 0.0032 30.5 7.8 82 443-539 1-88 (303)
187 cd06277 PBP1_LacI_like_1 Ligan 34.8 4.1E+02 0.009 26.1 10.7 20 453-472 17-36 (268)
188 cd06286 PBP1_CcpB_like Ligand- 34.7 3.9E+02 0.0084 26.1 10.4 58 444-516 2-62 (260)
189 cd01988 Na_H_Antiporter_C The 34.7 79 0.0017 27.6 5.0 50 457-524 58-108 (132)
190 cd06284 PBP1_LacI_like_6 Ligan 34.6 4.4E+02 0.0095 25.6 10.8 78 444-539 2-83 (267)
191 cd01019 ZnuA Zinc binding prot 34.5 1E+02 0.0022 32.3 6.6 66 463-540 192-258 (286)
192 cd06278 PBP1_LacI_like_2 Ligan 33.8 4.4E+02 0.0095 25.6 10.6 29 444-472 2-33 (266)
193 cd06293 PBP1_LacI_like_11 Liga 33.6 3.8E+02 0.0082 26.4 10.2 80 444-540 2-85 (269)
194 PF13844 Glyco_transf_41: Glyc 33.4 1.3E+02 0.0028 34.5 7.5 49 422-479 301-349 (468)
195 PF00763 THF_DHG_CYH: Tetrahyd 33.3 2.1E+02 0.0046 26.2 7.7 49 440-491 29-79 (117)
196 PF14398 ATPgrasp_YheCD: YheC/ 33.0 82 0.0018 32.8 5.5 25 281-305 183-207 (262)
197 COG0695 GrxC Glutaredoxin and 32.9 1.1E+02 0.0025 26.1 5.5 38 450-491 7-45 (80)
198 PRK11303 DNA-binding transcrip 32.8 5.6E+02 0.012 26.2 12.7 111 441-579 61-176 (328)
199 cd06312 PBP1_ABC_sugar_binding 32.6 5E+02 0.011 25.7 11.6 30 443-472 1-34 (271)
200 TIGR03609 S_layer_CsaB polysac 32.3 2.3E+02 0.0049 29.3 8.7 83 445-557 210-292 (298)
201 TIGR02955 TMAO_TorT TMAO reduc 32.3 3.9E+02 0.0084 27.2 10.3 81 443-539 1-87 (295)
202 PRK09492 treR trehalose repres 32.2 5.5E+02 0.012 26.1 11.4 127 441-598 62-204 (315)
203 PRK11041 DNA-binding transcrip 32.2 2.4E+02 0.0052 28.5 8.7 134 424-578 135-279 (309)
204 PRK02842 light-independent pro 32.0 3.7E+02 0.0081 29.9 10.8 34 441-476 166-199 (427)
205 COG1740 HyaA Ni,Fe-hydrogenase 32.0 48 0.001 36.4 3.7 38 499-540 139-189 (355)
206 cd00758 MoCF_BD MoCF_BD: molyb 31.9 2E+02 0.0044 26.5 7.4 98 458-575 22-125 (133)
207 PF00532 Peripla_BP_1: Peripla 31.3 1.5E+02 0.0032 30.6 7.1 119 442-578 119-255 (279)
208 cd06295 PBP1_CelR Ligand bindi 31.1 5.3E+02 0.011 25.5 11.4 31 442-472 4-44 (275)
209 cd06282 PBP1_GntR_like_2 Ligan 30.8 5.1E+02 0.011 25.2 11.8 29 444-472 2-33 (266)
210 PRK00861 putative lipid kinase 30.4 1.1E+02 0.0023 32.1 5.9 73 449-541 14-89 (300)
211 cd01538 PBP1_ABC_xylose_bindin 30.3 5.8E+02 0.013 25.7 13.8 80 444-539 2-86 (288)
212 PRK14568 vanB D-alanine--D-lac 30.2 67 0.0014 34.4 4.5 96 443-562 5-148 (343)
213 COG3340 PepE Peptidase E [Amin 30.0 1.1E+02 0.0023 31.9 5.6 46 443-491 34-82 (224)
214 TIGR02990 ectoine_eutA ectoine 29.6 97 0.0021 32.1 5.3 94 442-555 121-223 (239)
215 PRK14842 undecaprenyl pyrophos 29.1 2.3E+02 0.005 29.7 8.0 85 438-528 6-111 (241)
216 cd06271 PBP1_AglR_RafR_like Li 28.9 3.1E+02 0.0068 26.7 8.6 32 441-472 120-154 (268)
217 PRK10014 DNA-binding transcrip 28.8 6.6E+02 0.014 25.9 13.3 82 441-539 64-150 (342)
218 TIGR01481 ccpA catabolite cont 28.7 4.1E+02 0.0088 27.3 9.8 118 441-578 176-302 (329)
219 TIGR02149 glgA_Coryne glycogen 28.2 7E+02 0.015 26.0 16.0 104 417-549 214-318 (388)
220 cd04165 GTPBP1_like GTPBP1-lik 27.7 5.2E+02 0.011 26.2 10.1 109 441-558 111-224 (224)
221 cd06300 PBP1_ABC_sugar_binding 27.5 4.3E+02 0.0094 26.0 9.5 32 441-472 125-160 (272)
222 cd00763 Bacterial_PFK Phosphof 26.9 1.6E+02 0.0034 32.0 6.5 39 503-543 86-125 (317)
223 PRK14830 undecaprenyl pyrophos 26.7 4E+02 0.0088 28.0 9.3 82 441-528 23-125 (251)
224 PF02670 DXP_reductoisom: 1-de 26.1 5E+02 0.011 24.7 9.0 29 499-527 80-108 (129)
225 KOG4435|consensus 26.1 1.9E+02 0.0042 32.8 7.0 115 420-557 36-164 (535)
226 PF01297 TroA: Periplasmic sol 26.0 3.7E+02 0.008 27.3 8.8 110 476-611 31-145 (256)
227 TIGR02717 AcCoA-syn-alpha acet 26.0 3.4E+02 0.0073 30.5 9.2 59 406-471 264-322 (447)
228 cd06298 PBP1_CcpA_like Ligand- 25.9 4.5E+02 0.0098 25.6 9.2 118 441-578 116-243 (268)
229 cd06314 PBP1_tmGBP Periplasmic 25.8 6.6E+02 0.014 24.8 10.7 81 444-539 2-85 (271)
230 COG0431 Predicted flavoprotein 25.3 2.9E+02 0.0064 27.1 7.7 105 443-561 2-140 (184)
231 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.2 3.5E+02 0.0076 28.3 8.6 70 444-526 107-177 (275)
232 PRK14573 bifunctional D-alanyl 24.9 97 0.0021 37.3 5.0 125 422-562 433-584 (809)
233 PF12745 HGTP_anticodon2: Anti 24.9 2.6E+02 0.0057 29.7 7.6 75 526-601 148-247 (273)
234 PRK12757 cell division protein 24.7 1.3E+02 0.0027 32.0 5.2 68 442-520 183-256 (256)
235 cd00860 ThrRS_anticodon ThrRS 24.5 3.4E+02 0.0073 22.4 6.9 59 443-520 3-61 (91)
236 cd06291 PBP1_Qymf_like Ligand 24.4 6.7E+02 0.015 24.5 12.0 99 444-573 2-103 (265)
237 PRK10916 ADP-heptose:LPS hepto 24.3 1.3E+02 0.0029 31.9 5.4 91 424-543 200-290 (348)
238 cd06299 PBP1_LacI_like_13 Liga 24.1 6.4E+02 0.014 24.6 9.9 32 441-472 116-150 (265)
239 TIGR02470 sucr_synth sucrose s 24.1 1.4E+03 0.031 28.1 15.1 113 456-592 604-723 (784)
240 TIGR03217 4OH_2_O_val_ald 4-hy 24.1 2.6E+02 0.0056 30.4 7.6 60 450-524 109-169 (333)
241 cd06292 PBP1_LacI_like_10 Liga 24.1 4.8E+02 0.01 25.6 9.1 39 441-479 122-165 (273)
242 cd06323 PBP1_ribose_binding Pe 24.0 5.9E+02 0.013 24.7 9.6 44 444-491 2-48 (268)
243 cd03418 GRX_GRXb_1_3_like Glut 23.8 3.1E+02 0.0067 21.9 6.4 37 451-491 7-43 (75)
244 cd01018 ZntC Metal binding pro 23.7 1.7E+02 0.0036 30.3 5.9 67 463-542 183-249 (266)
245 COG4026 Uncharacterized protei 23.6 2E+02 0.0042 30.3 6.1 58 442-517 7-65 (290)
246 PRK10310 PTS system galactitol 23.5 4.1E+02 0.0088 23.5 7.5 30 443-472 4-35 (94)
247 COG0796 MurI Glutamate racemas 23.3 2.4E+02 0.0051 30.2 6.9 92 441-542 5-100 (269)
248 PRK11175 universal stress prot 23.1 2.6E+02 0.0057 28.6 7.2 39 503-542 101-147 (305)
249 cd06322 PBP1_ABC_sugar_binding 22.8 7.2E+02 0.016 24.3 10.1 81 444-540 2-87 (267)
250 COG0777 AccD Acetyl-CoA carbox 22.5 60 0.0013 34.8 2.3 34 531-564 155-201 (294)
251 PRK13059 putative lipid kinase 22.3 2.2E+02 0.0048 29.8 6.5 75 449-543 13-92 (295)
252 PF01177 Asp_Glu_race: Asp/Glu 22.3 1.3E+02 0.0028 29.3 4.5 73 441-522 107-188 (216)
253 cd06270 PBP1_GalS_like Ligand 22.3 7.5E+02 0.016 24.3 11.1 59 444-518 2-63 (268)
254 PF13421 Band_7_1: SPFH domain 22.2 1.7E+02 0.0036 29.9 5.4 32 285-316 160-191 (211)
255 cd01452 VWA_26S_proteasome_sub 21.9 8.2E+02 0.018 24.6 10.2 68 421-491 86-158 (187)
256 PF00448 SRP54: SRP54-type pro 21.8 1.9E+02 0.0041 28.8 5.6 72 441-526 29-100 (196)
257 PF01177 Asp_Glu_race: Asp/Glu 21.8 1.2E+02 0.0026 29.4 4.2 95 444-540 1-96 (216)
258 PF02645 DegV: Uncharacterised 21.4 4.3E+02 0.0094 27.5 8.4 44 443-491 1-51 (280)
259 cd03129 GAT1_Peptidase_E_like 21.3 7.4E+02 0.016 24.5 9.7 34 441-474 29-63 (210)
260 PRK08195 4-hyroxy-2-oxovalerat 21.2 3.8E+02 0.0082 29.2 8.1 62 449-525 109-171 (337)
261 TIGR02181 GRX_bact Glutaredoxi 21.1 2.8E+02 0.0062 22.6 5.7 22 451-472 6-27 (79)
262 PRK00865 glutamate racemase; P 20.7 2.5E+02 0.0054 29.1 6.4 87 442-539 6-97 (261)
263 PRK11175 universal stress prot 20.3 2.3E+02 0.005 29.1 6.0 66 460-542 228-301 (305)
264 PRK10569 NAD(P)H-dependent FMN 20.2 8.6E+02 0.019 24.1 11.7 146 443-601 2-173 (191)
265 cd06316 PBP1_ABC_sugar_binding 20.1 3.6E+02 0.0078 27.2 7.4 30 443-472 1-33 (294)
266 PF06490 FleQ: Flagellar regul 20.1 2.3E+02 0.005 25.6 5.3 70 451-543 6-79 (109)
267 PRK03202 6-phosphofructokinase 20.0 2.2E+02 0.0047 30.9 6.0 39 503-543 87-126 (320)
No 1
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic group of SAICAR synthetases represented by the Drosophila melanogaster, N-terminal, SAICAR synthetase domain of bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs) catalyzes the sixth and seventh steps of the de novo biosynthesis of purine nucleotides (also reported as seventh and eighth steps). SAICAR synthetase converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=2.1e-67 Score=532.15 Aligned_cols=246 Identities=58% Similarity=1.019 Sum_probs=228.7
Q ss_pred cCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceee
Q psy246 9 KNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKI 88 (615)
Q Consensus 9 m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkr 88 (615)
|+.+++|||||||+||+++++|+.++++|||++|||||+++++|+|||.+||+||+++|++|++.
T Consensus 1 ~~~~~~lyeGK~K~iY~~~~~~~~li~~fkD~~sAfd~~~~~~I~gKG~~~~~is~~~F~~L~~~--------------- 65 (252)
T cd01416 1 LKLGKKLIEGKTKIVYELPDQPGLVLIQSKDRITAGDGARKDEIEGKAAISNKTTSNVFELLQEA--------------- 65 (252)
T ss_pred CcccccccccCceEEEecCCCCCEEEEEEeCCCcCCCCcccCCCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 45678999999999999756789999999999999999999999999999999999999988853
Q ss_pred eecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccc
Q psy246 89 HLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKD 168 (615)
Q Consensus 89 y~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lD 168 (615)
| |+|
T Consensus 66 --------------------------------------------------G---------------------I~t----- 69 (252)
T cd01416 66 --------------------------------------------------G---------------------IKT----- 69 (252)
T ss_pred --------------------------------------------------C---------------------CCc-----
Confidence 6 778
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccC
Q psy246 169 KQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRF 248 (615)
Q Consensus 169 Kd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l 248 (615)
|| + +.+++++|+||+|+|||||||||||||||+|+||+|+++|++|
T Consensus 70 --------------------Hf---------i-----~~~~~~~~lvkk~~~iPlEvIvR~~a~GS~~kry~g~~eg~~l 115 (252)
T cd01416 70 --------------------HF---------V-----KQCSPTAFIARKCEMIPIEWVCRRIATGSFLKRNPGVKEGYRF 115 (252)
T ss_pred --------------------ee---------e-----cccCCCeEEEEEeeeeeEEEEEEeeeecchHhhcCCCCCcccC
Confidence 99 7 4568999999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCCCCCCHHHHHhccC--CC--CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCC
Q psy246 249 CPPCQETFFKDDANHDPQWSDEQILSANL--DN--VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGK 324 (615)
Q Consensus 249 ~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~--~~--~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~ 324 (615)
++|++||+||+|+.|||+||++|++++|+ .. +++++++.|+++|++||++++++|+++|++|||||+|||+
T Consensus 116 ~~PivE~~~K~d~~~Dp~I~~~~~~~~~~~~~~~~~t~~e~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~----- 190 (252)
T cd01416 116 SPPKLEFFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMTKSTIAIFEILEKAWATQDCTLVDMKIEFGV----- 190 (252)
T ss_pred CCCeeeEEeeCCCCCCCCCCHHHHHHcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeE-----
Confidence 99999999999999999999999999884 12 8999999999999999999999999999999999999994
Q ss_pred cccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCC-CCEEEEecccCCCcccccCCCccccc
Q psy246 325 VSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNE-GNILVSDVIDSDSWRLWPEGKKELMK 403 (615)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~-g~ivLaD~itpDs~Rlw~~~~~~~~~ 403 (615)
+.+ |+|+|+|||||||||||+.++++.++
T Consensus 191 --------------------------------------------------~~~~g~ivL~DEisPDs~RlW~~~~~~~~l 220 (252)
T cd01416 191 --------------------------------------------------DVTTGEILLADVIDNDSWRLWPSGDKRLMK 220 (252)
T ss_pred --------------------------------------------------eCCCCeEEEEEEECCCceeeeECCCCCccC
Confidence 445 99999999999999999999988889
Q ss_pred ccccccccccccccccchhhhhHHHHHHHhh
Q psy246 404 DKQVYRNLSNVTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 404 DKq~~R~~~~~~~~~l~~VkenY~eVA~~L~ 434 (615)
|||+||+|..++...++.|+.||.|++..+.
T Consensus 221 DK~~~R~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (252)
T cd01416 221 DKQVYRNLKEVTDEALQEVKKNYEWVADKLE 251 (252)
T ss_pred CcHHHhcCcccchHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998653
No 2
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed
Probab=100.00 E-value=5.4e-65 Score=511.90 Aligned_cols=235 Identities=31% Similarity=0.518 Sum_probs=219.8
Q ss_pred cCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceee
Q psy246 9 KNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKI 88 (615)
Q Consensus 9 m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkr 88 (615)
|++.++|||||+|.||++ ++|+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 1 ~~~~~~ly~GK~K~vy~~-~~~~~ll~~f~D~isafD~~~~~~i~gKG~~~~~is~~~F~~L~----------------- 62 (238)
T PRK09362 1 MEKKELLYEGKAKIVYST-DDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKKLE----------------- 62 (238)
T ss_pred CCcccccccccceEEEEc-CCCCEEEEEEeCCceecCcccCCCCCCHHHHHHHHHHHHHHHHH-----------------
Confidence 344689999999999999 68999999999999999999999999999999999999999998
Q ss_pred eecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccc
Q psy246 89 HLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKD 168 (615)
Q Consensus 89 y~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lD 168 (615)
++| |+|
T Consensus 63 ------------------------------------------------~~G---------------------I~t----- 68 (238)
T PRK09362 63 ------------------------------------------------EAG---------------------IPT----- 68 (238)
T ss_pred ------------------------------------------------hCC---------------------CCc-----
Confidence 556 888
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccC
Q psy246 169 KQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRF 248 (615)
Q Consensus 169 Kd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l 248 (615)
|| + +.+++++|+||+|+|||||||||||+|||+|+|| |+++|++|
T Consensus 69 --------------------H~---------i-----~~~~~~~~lv~k~~~iPiEvIvR~~a~GS~~~ry-g~~eg~~l 113 (238)
T PRK09362 69 --------------------HF---------I-----EKLSDREQLVKKVEIIPLEVVVRNVAAGSLVKRL-GIEEGTVL 113 (238)
T ss_pred --------------------eE---------e-----cccCCCeEEEEEcceeeEEEEEeeeeceehhhhc-CCccCCcC
Confidence 99 7 5678999999999999999999999999999998 68999999
Q ss_pred CCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccC
Q psy246 249 CPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF 328 (615)
Q Consensus 249 ~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~ 328 (615)
++|++||+||+|++|||+||++|+.++| ++|++|++.|+++|++||++++++|+++||+|||||+|||+
T Consensus 114 ~~Pive~~~K~d~~~Dp~i~~~~~~~~~--~~t~~e~~~i~~~al~i~~~l~~~~~~~Gl~LvD~K~EFG~--------- 182 (238)
T PRK09362 114 PPPIVEFYYKNDALGDPMINEDHILALG--WATPEELAEIKELALKINDVLKGLFAGAGIRLVDFKLEFGR--------- 182 (238)
T ss_pred CCCeEEEEecCCCCCCCCCCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeeE---------
Confidence 9999999999999999999999999988 49999999999999999999999999999999999999994
Q ss_pred CCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcccccccccc
Q psy246 329 PQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVY 408 (615)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~ 408 (615)
+.+|+|+|+|||||||||||+.+++ .++|||+|
T Consensus 183 ----------------------------------------------~~~g~ivL~DEispDs~R~W~~~~~-~~lDK~~~ 215 (238)
T PRK09362 183 ----------------------------------------------DKDGEIVLADEISPDTCRLWDKETN-EKLDKDRF 215 (238)
T ss_pred ----------------------------------------------cCCCCEEEEEeeCCcccccccCCCC-cccChHHH
Confidence 5679999999999999999999884 46899999
Q ss_pred cccccccccccchhhhhHHHHHHHhhc
Q psy246 409 RNLSNVTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 409 R~~~~~~~~~l~~VkenY~eVA~~L~~ 435 (615)
|+ ++++|.++|+||++|+..
T Consensus 216 R~-------~~~~~~~~Y~~v~~rl~~ 235 (238)
T PRK09362 216 RR-------DLGGVIEAYEEVLKRLGE 235 (238)
T ss_pred hc-------ccchHHHHHHHHHHHHhc
Confidence 96 577899999999999864
No 3
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=8.6e-65 Score=508.03 Aligned_cols=229 Identities=32% Similarity=0.553 Sum_probs=215.1
Q ss_pred cccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeecCC
Q psy246 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLKS 93 (615)
Q Consensus 14 llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~lKd 93 (615)
+|||||+|+||++ ++|+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 1 ~ly~GK~K~vy~~-~~~~~l~~~f~D~~tafDg~~~~~i~gKG~~~~~~s~~~F~~L~---------------------- 57 (230)
T cd01415 1 LLYEGKAKIVYAT-DDPDVLIVEFKDDATAFNGKKKDTIEGKGVLNNEISALIFKYLE---------------------- 57 (230)
T ss_pred CcccccceEEEEc-CCCCEEEEEEeCCccccCCccCCCCCCHhHHHHHHHHHHHHHHH----------------------
Confidence 5899999999999 67789999999999999999999999999999999999999998
Q ss_pred CCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccccc
Q psy246 94 DPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR 173 (615)
Q Consensus 94 D~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR 173 (615)
++| |+|
T Consensus 58 -------------------------------------------~~g---------------------I~t---------- 63 (230)
T cd01415 58 -------------------------------------------ENG---------------------IKT---------- 63 (230)
T ss_pred -------------------------------------------hCC---------------------CCC----------
Confidence 456 888
Q ss_pred cCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccCCCCce
Q psy246 174 NLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQ 253 (615)
Q Consensus 174 dLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l~~Pi~ 253 (615)
|| + +.+++++|+||+|+|||||||||||||||+|+||+ +++|++|++|++
T Consensus 64 ---------------H~---------i-----~~~~~~~~~v~k~~miPlEvIvR~~a~GS~~~ry~-~~eg~~l~~Piv 113 (230)
T cd01415 64 ---------------HF---------I-----EKLSDREQLVKKVEIIPLEVVVRNIAAGSLVKRLG-IEEGTVLDPPIV 113 (230)
T ss_pred ---------------ee---------e-----cccCCCEEEEEEcccccEEEEEecccccccHhhcC-CCCCCcCCCCEE
Confidence 99 7 56789999999999999999999999999999985 999999999999
Q ss_pred eeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCcc
Q psy246 254 ETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPM 333 (615)
Q Consensus 254 e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~ 333 (615)
||+||+|++|||+||++++.++|+ +|++|++.|+++|++||++++++|+++||+|||+|+|||+
T Consensus 114 e~~~K~d~~~Dp~i~~~~~~~~~~--~~~~e~~~i~~~~l~v~~~l~~~~~~~gl~LvD~K~EFG~-------------- 177 (230)
T cd01415 114 EFYYKNDELGDPLINEDHILALGL--ATEEELKEIKELALKINEVLSEFFAEIGIILVDFKLEFGR-------------- 177 (230)
T ss_pred EEEecCCCCCCCCCCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeE--------------
Confidence 999999999999999999999884 9999999999999999999999999999999999999994
Q ss_pred chhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCccccccccccccccc
Q psy246 334 KLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSN 413 (615)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~R~~~~ 413 (615)
+.+|+|+|+|||||||||||+.++. .++|||+||+
T Consensus 178 -----------------------------------------~~~g~ivL~DEispDs~R~w~~~~~-~~lDK~~~R~--- 212 (230)
T cd01415 178 -----------------------------------------DKDGEIVLADEISPDTCRLWDKETG-EKLDKDRFRR--- 212 (230)
T ss_pred -----------------------------------------cCCCCEEEEEeeCCCccccccCCCC-cccCHHHHhc---
Confidence 4579999999999999999999874 4789999997
Q ss_pred ccccccchhhhhHHHHHHHhh
Q psy246 414 VTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 414 ~~~~~l~~VkenY~eVA~~L~ 434 (615)
+++++.++|+||++++.
T Consensus 213 ----~~~~~~~~Y~~v~~r~~ 229 (230)
T cd01415 213 ----DLGDVIEAYEEVLKRLG 229 (230)
T ss_pred ----ccchHHHHHHHHHHHhc
Confidence 57789999999999874
No 4
>cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. SAICAR synthetase (the PurC gene product) catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=1.8e-61 Score=484.38 Aligned_cols=229 Identities=35% Similarity=0.554 Sum_probs=213.3
Q ss_pred cccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeecCC
Q psy246 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLKS 93 (615)
Q Consensus 14 llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~lKd 93 (615)
+|||||+|+||++ ++ +.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 1 ~ly~GK~K~vy~~-~~-~~l~~~f~D~isafd~~~~~~i~gKG~~~~~is~~~F~~L~---------------------- 56 (230)
T cd00476 1 TLYRGKTKIVYET-KD-GVLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLS---------------------- 56 (230)
T ss_pred CCcCccCceEEEc-CC-CEEEEEEeCcccccCcccCCCCCCHHHHHHHHHHHHHHHHH----------------------
Confidence 4899999999998 45 89999999999999999999999999999999999999998
Q ss_pred CCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccccc
Q psy246 94 DPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR 173 (615)
Q Consensus 94 D~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR 173 (615)
++| |+|
T Consensus 57 -------------------------------------------~~g---------------------I~t---------- 62 (230)
T cd00476 57 -------------------------------------------EAG---------------------IPT---------- 62 (230)
T ss_pred -------------------------------------------hCC---------------------CCC----------
Confidence 335 788
Q ss_pred cCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccCCCCce
Q psy246 174 NLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQ 253 (615)
Q Consensus 174 dLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l~~Pi~ 253 (615)
|| + +.+++++|+|++|+|||||||||||||||+|+||+|+++|++|++|++
T Consensus 63 ---------------H~---------i-----~~~~~~~~~v~k~~miPlEvIvR~~a~GS~~rry~g~~eg~~l~~Piv 113 (230)
T cd00476 63 ---------------HF---------V-----ERLGPRTLLVDKLKXIPLEVVVRNRATGSFVKRYGGFKEGREFPPPLV 113 (230)
T ss_pred ---------------ee---------e-----eecCCCEEEEEecCcccEEEEEeeeeccchhhhcCCCCCCCcCCCCEE
Confidence 99 6 567899999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCcc
Q psy246 254 ETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPM 333 (615)
Q Consensus 254 e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~ 333 (615)
||+||+|+.|||+||+++++++|+ ++++|++.|+++|++||++++++|+++|++|||||+|||+
T Consensus 114 e~~~K~d~~~Dp~i~~~~~~~~~~--~~~~e~~~i~~~al~v~~~l~~~~~~~gl~LvD~K~EFG~-------------- 177 (230)
T cd00476 114 EFFYKDDAEHDPIVSEDQLERLGF--IGKVDVERXKELAVKINTVLKKLFSPAGLELWDFKLEFGL-------------- 177 (230)
T ss_pred EeeccCccCCCCCCCHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeEe--------------
Confidence 999999999999999999999885 9999999999999999999999999999999999999994
Q ss_pred chhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCccccccc-ccccccc
Q psy246 334 KLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDK-QVYRNLS 412 (615)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DK-q~~R~~~ 412 (615)
+.+|+|+|+|||+|||||||+.++++.. +| +++|
T Consensus 178 -----------------------------------------~~~g~ivL~DEi~pDs~R~w~~~~~~~~-~~~~~~~--- 212 (230)
T cd00476 178 -----------------------------------------DEEGEIVLGDEISPDSSRLWRKGGEPYD-KDLFRRR--- 212 (230)
T ss_pred -----------------------------------------cCCCCEEEEEEECCCceeeccCcccccC-CcccCCH---
Confidence 4579999999999999999999998754 44 7777
Q ss_pred cccccccchhhhhHHHHHHHhh
Q psy246 413 NVTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 413 ~~~~~~l~~VkenY~eVA~~L~ 434 (615)
+.++++.++|.++.++++
T Consensus 213 ----~~~~~~~~~Y~ev~~rl~ 230 (230)
T cd00476 213 ----ASLGQIIEKYEEVAELVR 230 (230)
T ss_pred ----HHHHHHHHHHHHHHHHhC
Confidence 479999999999999874
No 5
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes.
Probab=100.00 E-value=2.8e-61 Score=484.59 Aligned_cols=232 Identities=30% Similarity=0.528 Sum_probs=216.6
Q ss_pred ccCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCccee
Q psy246 8 TKNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKK 87 (615)
Q Consensus 8 ~m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kk 87 (615)
.|++.++|||||+|+||++ ++|+.++++|||++|||||+++++|+|||++||+||+++|++|+++
T Consensus 2 ~~~~~~~ly~GK~K~vy~~-~~~~~li~~f~D~~tafdg~~~~~i~gKG~~~~~is~~~F~~L~~~-------------- 66 (237)
T TIGR00081 2 QIKKRQKLYSGKAKDIYET-DDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEKLEEA-------------- 66 (237)
T ss_pred CcccccccccccceEEEEC-CCCCEEEEEEeCCccccCcccCCCCCCHHHHHHHHHHHHHHHHHhC--------------
Confidence 4666789999999999998 7889999999999999999999999999999999999999999965
Q ss_pred eeecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccc
Q psy246 88 IHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMK 167 (615)
Q Consensus 88 ry~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~l 167 (615)
| |+|
T Consensus 67 ---------------------------------------------------G---------------------I~t---- 70 (237)
T TIGR00081 67 ---------------------------------------------------G---------------------IPT---- 70 (237)
T ss_pred ---------------------------------------------------C---------------------CCc----
Confidence 6 788
Q ss_pred cccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCccccc
Q psy246 168 DKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYR 247 (615)
Q Consensus 168 DKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~ 247 (615)
|| + +.+++++|+||+|+|||||||||||||||+|+|+ ++++|.+
T Consensus 71 ---------------------H~---------i-----~~~~~~~~lv~k~~~iPlEvIvR~~a~GS~~rr~-~~~eG~~ 114 (237)
T TIGR00081 71 ---------------------HY---------I-----DLIEDREMLVKKLDIIPLEVIVRNIAAGSLLKRL-GIPEGLE 114 (237)
T ss_pred ---------------------ce---------e-----cccCCCEEEEEEcceecEEEEEeccccccceecc-CCCCCCc
Confidence 99 7 5778999999999999999999999999999996 5999999
Q ss_pred CCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCccc
Q psy246 248 FCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSF 327 (615)
Q Consensus 248 l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~ 327 (615)
|++|++||+||+|+.|||.++.+++..+| +++++|++.|+++|++||++++++|+++|++|||||+|||+
T Consensus 115 ~~~pl~E~~~k~d~~~Dp~i~~~~~~~~~--~~~~~e~~~i~~~a~~v~~~l~~~~~~~gl~LvD~K~EFG~-------- 184 (237)
T TIGR00081 115 LEQPLVEFIFKPDEVGDPMLNESYAEALG--LATEEELERIKELALKVNEVLKKYFDEKGIILVDFKLEFGL-------- 184 (237)
T ss_pred CCCCccceEEcccccCCCCCCHhHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeE--------
Confidence 99999999999999999999999999988 49999999999999999999999999999999999999994
Q ss_pred CCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcc---cccc
Q psy246 328 FPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKE---LMKD 404 (615)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~---~~~D 404 (615)
+.+|+|+|+|||||||||||+.++++ +.+|
T Consensus 185 -----------------------------------------------~~~g~ivL~DEIsPDs~R~w~~~~~~~g~p~ld 217 (237)
T TIGR00081 185 -----------------------------------------------DEEGNLILADEVSPDTCRLWDKETYEVGAPKLD 217 (237)
T ss_pred -----------------------------------------------cCCCCEEEEEEEcCcceeecccccCCcCCCCCC
Confidence 56899999999999999999999876 3479
Q ss_pred cccccccccccccccchhhhhHHHHH
Q psy246 405 KQVYRNLSNVTAEGLNQVKLNFTWIA 430 (615)
Q Consensus 405 Kq~~R~~~~~~~~~l~~VkenY~eVA 430 (615)
||+||. +++.+.++|++++
T Consensus 218 kdv~r~-------~~~~~~eaY~~i~ 236 (237)
T TIGR00081 218 KDIFRR-------TLGKLIEAYETVA 236 (237)
T ss_pred HHHHHh-------hHHHHHHHHHHHh
Confidence 999994 7889999999875
No 6
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.5e-60 Score=474.58 Aligned_cols=234 Identities=32% Similarity=0.529 Sum_probs=216.6
Q ss_pred ccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeee
Q psy246 11 VGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHL 90 (615)
Q Consensus 11 ~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~ 90 (615)
+..++||||+|+||++ +|++.++++|||++|||||+++++|+|||++||+||+++|++|++
T Consensus 3 ~~~~ly~GKaK~vY~~-~d~~~li~~f~D~~sAfdg~~~~~i~gKG~~n~~iS~~~F~~L~~------------------ 63 (247)
T COG0152 3 KLRLLYEGKAKDLYET-DDPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEE------------------ 63 (247)
T ss_pred ccccccccccceeeEc-CCCCEEEEEEeccceeccccccccCCChhHHHHHHHHHHHHHHHH------------------
Confidence 3458999999999999 789989999999999999999999999999999999999998763
Q ss_pred cCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccccc
Q psy246 91 LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQ 170 (615)
Q Consensus 91 lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd 170 (615)
+| |+|
T Consensus 64 -----------------------------------------------~g---------------------i~t------- 68 (247)
T COG0152 64 -----------------------------------------------AG---------------------IPT------- 68 (247)
T ss_pred -----------------------------------------------cC---------------------CCc-------
Confidence 23 567
Q ss_pred ccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccCCC
Q psy246 171 VYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCP 250 (615)
Q Consensus 171 ~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l~~ 250 (615)
|| + ...++|++++++++|||||||||||+|||+|||| |..||+.++.
T Consensus 69 ------------------H~---------i-----~~~~~~~~lvkk~~iiPlEvVvRn~~aGS~~kr~-~~~eg~~~~~ 115 (247)
T COG0152 69 ------------------HF---------I-----ELLSDREQLVKKLEIIPLEVVVRNYAAGSLLKRY-GIEEGTVLGI 115 (247)
T ss_pred ------------------ce---------e-----eccCCCeEEEEEeeEEeEEEEEeceecchhHHHh-ccccceECCC
Confidence 88 6 5568999999999999999999999999999997 5789999999
Q ss_pred CceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCC
Q psy246 251 PCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQ 330 (615)
Q Consensus 251 Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~ 330 (615)
|++|+++|+|+.|||.++++++..++ +++++++++|+++|++||++|+++|+++|++|||||+|||+
T Consensus 116 ~l~e~~~k~d~l~dPiv~d~~i~~~~--~~~~ee~~~i~~~alkin~~l~~~~~~~GiilvD~KlEFG~----------- 182 (247)
T COG0152 116 PLVEFLYKNDELPDPIVTDEHISALG--IATPEEIEEIKELALKINEVLKDLFAKRGIILVDFKLEFGL----------- 182 (247)
T ss_pred CCccccccchhcCCCccchhhcchhc--cCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeeEEeeE-----------
Confidence 99999999999999999999999988 58899999999999999999999999999999999999994
Q ss_pred CccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcccccccccccc
Q psy246 331 APMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRN 410 (615)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~R~ 410 (615)
+.+|+|+|+|||+|||||||+..+++.++|||+||+
T Consensus 183 --------------------------------------------d~~g~iiLaDEisPDs~R~Wd~~t~~~~~DKd~~R~ 218 (247)
T COG0152 183 --------------------------------------------DEDGEIVLADEISPDSCRLWDAETYEKSLDKDFFRR 218 (247)
T ss_pred --------------------------------------------cCCCCEEEEeeeCCCccccccccccccccchHHHhh
Confidence 567999999999999999999999987689999996
Q ss_pred cccccccccchhhhhHHHHHHHhhc
Q psy246 411 LSNVTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 411 ~~~~~~~~l~~VkenY~eVA~~L~~ 435 (615)
+++.+.+.|++++++++.
T Consensus 219 -------~~g~~~~~y~ev~~r~~~ 236 (247)
T COG0152 219 -------DLGDLPELYEEVLERLSD 236 (247)
T ss_pred -------cCCCccccHHHHHHHHHH
Confidence 566999999999998854
No 7
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=1e-57 Score=470.85 Aligned_cols=248 Identities=23% Similarity=0.337 Sum_probs=207.0
Q ss_pred ccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeecC
Q psy246 13 DLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLK 92 (615)
Q Consensus 13 ~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~lK 92 (615)
+++||||+|+||++ + ++.++++|||++|||||+++++|+|||++||+||+++|++|+ .++ + -+++.
T Consensus 13 ~~iy~GKvK~vY~~-~-~~~ll~~~~DriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~-~~I--p---------tH~i~ 78 (296)
T PRK13961 13 PLLGRGKVRDIYAV-D-DDRLLMVATDRISAFDVILPEPIPDKGRVLTQMSNFWFDKLA-HIV--P---------NHLTG 78 (296)
T ss_pred cccccccCceEEEc-C-CCEEEEEEeCCccccCcccCCCCCCHHHHHHHHHHHHHHHHh-ccC--C---------cceec
Confidence 58999999999998 3 678999999999999999999999999999999999999998 332 1 12222
Q ss_pred CCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccccccc
Q psy246 93 SDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVY 172 (615)
Q Consensus 93 dD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~f 172 (615)
.++ ++++ . +
T Consensus 79 ~~~--~~~~-----------~-------------------------------------------------~--------- 87 (296)
T PRK13961 79 IDV--DDVV-----------P-------------------------------------------------A--------- 87 (296)
T ss_pred ccc--cccc-----------c-------------------------------------------------h---------
Confidence 111 0000 0 0
Q ss_pred ccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCC------------
Q psy246 173 RNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHP------------ 240 (615)
Q Consensus 173 RdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~------------ 240 (615)
++ - ..+++|+|+||+|+|||||||||||+|||+|+||.
T Consensus 88 ----------------~~---------~-----~~~~~~~m~vrk~~~iPlEvIvR~y~~GS~~kry~~~~~~~g~~lp~ 137 (296)
T PRK13961 88 ----------------DE---------A-----DQVLGRAVVVKKLKPLPVECVVRGYLTGSGWKDYQATGTVCGIKLPA 137 (296)
T ss_pred ----------------hh---------h-----hccCCceeEEEEccEeeEEEEEecccchhhHHHhhccCcccCccCCC
Confidence 01 0 24578999999999999999999999999999993
Q ss_pred CCcccccCCCCceeeeecCCCC-CCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeec
Q psy246 241 GTQECYRFCPPCQETFFKDDAN-HDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGI 319 (615)
Q Consensus 241 g~~~g~~l~~Pi~e~~~K~d~~-~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~ 319 (615)
|+++|++|++|++||+||+|.+ |||+||++++.+ +++++|+++|+++|++||++++++|+++|++|||||+|||+
T Consensus 138 gl~eg~~L~~Pi~e~~tK~d~~~hDp~Is~~~~~~----~~~~~e~~~i~~~al~v~~~l~~~~~~~GiiLvD~K~EFG~ 213 (296)
T PRK13961 138 GLVEASKLPEPIFTPATKAELGDHDENISFEEVVE----LVGAELAAQLRDATLAIYKEAADYAATRGIIIADTKFEFGL 213 (296)
T ss_pred CccccCcCCCCEEeeeecccccCCCCCCCHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeEEcee
Confidence 7899999999999999999999 999999999986 48999999999999999999999999999999999999994
Q ss_pred CCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecc-cCCCcccccCCC
Q psy246 320 DNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI-DSDSWRLWPEGK 398 (615)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~i-tpDs~Rlw~~~~ 398 (615)
+.+|+|+|+||| ||||||||+.++
T Consensus 214 -------------------------------------------------------~~~g~iiL~DEI~TPDs~R~Wd~~~ 238 (296)
T PRK13961 214 -------------------------------------------------------DEDGTLTLMDEVLTPDSSRFWPADS 238 (296)
T ss_pred -------------------------------------------------------cCCCcEEEEeeccCCCcceeccccc
Confidence 467999999999 999999999998
Q ss_pred cc-----ccccccccccccccc------------ccccchhhhhHHHHHHHhh
Q psy246 399 KE-----LMKDKQVYRNLSNVT------------AEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 399 ~~-----~~~DKq~~R~~~~~~------------~~~l~~VkenY~eVA~~L~ 434 (615)
++ .++|||+||+|..-+ ++=.......|.++.++++
T Consensus 239 ~e~g~~~~~lDKq~~R~~l~~~~~~~~~~~p~lP~ei~~~~~~~Y~~~~e~it 291 (296)
T PRK13961 239 YQPGTSQPSFDKQFVRDWLETSGWDKTAPAPPLPADVIEKTRAKYREALERLT 291 (296)
T ss_pred cccCCcccccCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 74 579999999885422 1112445666766666664
No 8
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=6e-57 Score=462.74 Aligned_cols=225 Identities=27% Similarity=0.400 Sum_probs=196.7
Q ss_pred cccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeecCC
Q psy246 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLKS 93 (615)
Q Consensus 14 llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~lKd 93 (615)
++|+||+|.||++ ++ +.++++|||++||||+.++.+|+|||++||+||+++|++|++ ++- + +++..
T Consensus 1 ~~y~GKvK~iY~~-~~-~~ll~~f~DriSafD~~~~~~IpgKG~~l~~iS~~~F~~l~~-gIp--t---------H~i~~ 66 (279)
T cd01414 1 LIYSGKVRDVYDL-GD-GRLLFVATDRISAFDVILPPDIPGKGEVLTQISAFWFELTED-IIP--N---------HLIST 66 (279)
T ss_pred CcccccceEEEEc-CC-CEEEEEEeCCccccccccCCCCCCHHHHHHHHHHHHHHHHhc-cCC--c---------cEecc
Confidence 4899999999998 44 899999999999999999999999999999999999999997 332 1 22221
Q ss_pred CCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccccc
Q psy246 94 DPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR 173 (615)
Q Consensus 94 D~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR 173 (615)
++...+ . ..+
T Consensus 67 ~~~~~~--~----------------------------------~~~---------------------------------- 76 (279)
T cd01414 67 DVEDLP--E----------------------------------IKE---------------------------------- 76 (279)
T ss_pred cccccc--c----------------------------------ccc----------------------------------
Confidence 111100 0 111
Q ss_pred cCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCC------------C
Q psy246 174 NLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHP------------G 241 (615)
Q Consensus 174 dLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~------------g 241 (615)
. ..+++++|+||+|+|||||||||||+|||+|+||. |
T Consensus 77 --------------------------~-----~~~~~~~~~v~k~~~iPlE~IvR~y~~GS~~~ry~~~~~~~g~~lp~g 125 (279)
T cd01414 77 --------------------------P-----EDPDGRSMVVKKAKPIPIECIVRGYLTGSGWKEYQKGGTVCGIKLPEG 125 (279)
T ss_pred --------------------------c-----ccCCCceeEEEeeeEEeEEEEEeeeecchhHHHhhccCccccccCCCC
Confidence 0 23578999999999999999999999999999993 7
Q ss_pred CcccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCC
Q psy246 242 TQECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDN 321 (615)
Q Consensus 242 ~~~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~ 321 (615)
+++|++|++|++||+||+|++|||+||++++.++ +++++++.|+++|++||++++++|+++|++|||||||||+
T Consensus 126 ~~eg~~L~~Pi~e~~tK~d~~~D~~Is~~~~~~~----~~~~~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~-- 199 (279)
T cd01414 126 LREAQKLPEPIFTPSTKAEEGHDENISFEEAVEI----IGAELADELRELALALYERAAEYAAKRGLILADTKFEFGL-- 199 (279)
T ss_pred ccccCcCCCCEEecccccccCCCCCCCHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeEeeE--
Confidence 8999999999999999999999999999999985 8999999999999999999999999999999999999994
Q ss_pred CCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecc-cCCCcccccCCCcc
Q psy246 322 EGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI-DSDSWRLWPEGKKE 400 (615)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~i-tpDs~Rlw~~~~~~ 400 (615)
+.+|+|+|+||| ||||||||+.++++
T Consensus 200 -----------------------------------------------------~~~g~ivL~DEi~TPDs~R~W~~~~~~ 226 (279)
T cd01414 200 -----------------------------------------------------DENGEIILIDEVLTPDSSRFWPADSYE 226 (279)
T ss_pred -----------------------------------------------------cCCCcEEEEEecCCCCcceeeeccccc
Confidence 457999999999 99999999999886
Q ss_pred -----cccccccccccc
Q psy246 401 -----LMKDKQVYRNLS 412 (615)
Q Consensus 401 -----~~~DKq~~R~~~ 412 (615)
.++|||+||+|.
T Consensus 227 ~g~~~~~lDK~~~R~~l 243 (279)
T cd01414 227 PGKEQPSFDKQFVRDWL 243 (279)
T ss_pred cCCCccccChHHHHHHH
Confidence 579999999873
No 9
>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=1.7e-56 Score=463.74 Aligned_cols=238 Identities=24% Similarity=0.323 Sum_probs=208.1
Q ss_pred cccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeec
Q psy246 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLL 91 (615)
Q Consensus 12 ~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~l 91 (615)
-+++|+||+|.||++ ++ +.++++|||++|||||++. +|+|||+++|+||+++|++|+. .
T Consensus 15 ~~~~y~GKvKdvY~~-~~-~~ll~v~~DriSAfD~~~~-~IpgKG~vl~~iS~~wF~~l~~-~----------------- 73 (313)
T PRK12607 15 LPNVYRGKVRDNYDL-PD-GRRVMVATDRISAFDRVLP-AIPYKGQVLNQTAAFWFEATKD-I----------------- 73 (313)
T ss_pred CchhccccCceEEEc-CC-CEEEEEEeCCccccCcccC-CCCChHHHHHHHHHHHHHHHhc-c-----------------
Confidence 367999999999998 33 7899999999999999999 9999999999999999987751 1
Q ss_pred CCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccc
Q psy246 92 KSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQV 171 (615)
Q Consensus 92 KdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~ 171 (615)
|+|
T Consensus 74 ---------------------------------------------------------------------ip~-------- 76 (313)
T PRK12607 74 ---------------------------------------------------------------------CPN-------- 76 (313)
T ss_pred ---------------------------------------------------------------------CCc--------
Confidence 234
Q ss_pred cccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccC------------
Q psy246 172 YRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRH------------ 239 (615)
Q Consensus 172 fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~------------ 239 (615)
|| + +.+++++|+||+|+|||||||||||+|||+|+||
T Consensus 77 -----------------H~---------i-----~~~~~~~m~vrk~~~iPiEvIvR~y~~GS~~kry~~g~~~~~gi~l 125 (313)
T PRK12607 77 -----------------HV---------L-----AVPDPNVVVGKRCEPFPVEMVVRGYLAGSTWRLYKAGKREMYGVTL 125 (313)
T ss_pred -----------------ce---------e-----cCCCCceeeeeeeeeeeEEEEEEeeecchhHHHhhccCCcccCccC
Confidence 66 4 3346789999999999999999999999999999
Q ss_pred -CCCcccccCCCCceeeeecCCC-CCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEee
Q psy246 240 -PGTQECYRFCPPCQETFFKDDA-NHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEF 317 (615)
Q Consensus 240 -~g~~~g~~l~~Pi~e~~~K~d~-~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Ef 317 (615)
.|+++|++|++|++||+||+|. .|||+||+++++++|+ +++++++.|+++|++||++++++|+++|++|||+||||
T Consensus 126 p~gl~eg~~Lp~Pi~tpstK~d~g~hD~~Is~~~~~~~~~--~~~~~~~~i~~~al~i~~~~~~~~~~~GiiLvD~K~EF 203 (313)
T PRK12607 126 PDGLRENQKLPEPIITPTTKAEEGGHDEPISPEEILAQGL--LTPEDWDELSKYALALFARGQEMAAERGLILVDTKYEF 203 (313)
T ss_pred CccccccCcCCCCeEeeeecCcccCCCCCCCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEee
Confidence 2789999999999999999998 5999999999999884 99999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecc-cCCCcccccC
Q psy246 318 GIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI-DSDSWRLWPE 396 (615)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~i-tpDs~Rlw~~ 396 (615)
|+ +.+|+|+|+||| ||||||||+.
T Consensus 204 G~-------------------------------------------------------d~~G~ivL~DEI~TPDssR~W~~ 228 (313)
T PRK12607 204 GK-------------------------------------------------------DADGRIVLIDEIHTPDSSRYWYA 228 (313)
T ss_pred ee-------------------------------------------------------cCCCcEEEEEeccCCCceeeeec
Confidence 94 467999999999 9999999999
Q ss_pred CCcc---------cccccccccccccccc------------cccchhhhhHHHHHHHhhc
Q psy246 397 GKKE---------LMKDKQVYRNLSNVTA------------EGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 397 ~~~~---------~~~DKq~~R~~~~~~~------------~~l~~VkenY~eVA~~L~~ 435 (615)
++++ .++|||+||+|..-+. +=...+.+.|.+..++++.
T Consensus 229 ~~y~~~~~~G~~~~slDKq~~R~wl~~~~~~~~~~~p~lP~evv~~t~~~Y~~~~e~iTg 288 (313)
T PRK12607 229 DGYEERFAAGEPQEQLDKEFVRQWLIERCGPYGQEIPEIPDEVIVSVSERYIELYEKITG 288 (313)
T ss_pred cccccccccCCCccccCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8886 5899999999854221 1124566778888777764
No 10
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR []. In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see IPR000031 from INTERPRO).; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process; PDB: 2GQS_A 2GQR_B 3KRE_A 3R9R_A 2H31_A 1A48_A 1OBD_A 2CNV_A 1OBG_A 2CNU_A ....
Probab=100.00 E-value=4.5e-57 Score=457.40 Aligned_cols=232 Identities=33% Similarity=0.588 Sum_probs=199.7
Q ss_pred ccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeecC
Q psy246 13 DLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLK 92 (615)
Q Consensus 13 ~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~lK 92 (615)
++|||||+|+||++ ++ +.++++|||++|||||+++++|+|||++||+||+++|++|++.
T Consensus 2 ~~ly~GK~K~vY~~-~d-~~l~~~~~D~isafD~~~~~~IpgKG~~~~~is~~~F~~L~~~------------------- 60 (248)
T PF01259_consen 2 KLLYEGKVKDVYET-DD-DTLLLVFKDRISAFDGVKPDTIPGKGELLNQISAFWFELLEDI------------------- 60 (248)
T ss_dssp EEEEE-SSEEEEEE-SS-TEEEEEE-SEEEETTTTEEEE-TTHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred CccccCCCeEEEEc-CC-CEEEEEEccCCccccccccCCCCchhHHHHHHHHHHHHHHhhh-------------------
Confidence 58999999999999 45 8999999999999999999999999999999999999999842
Q ss_pred CCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccccccc
Q psy246 93 SDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVY 172 (615)
Q Consensus 93 dD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~f 172 (615)
|+|
T Consensus 61 --------------------------------------------------------------------I~t--------- 63 (248)
T PF01259_consen 61 --------------------------------------------------------------------IPT--------- 63 (248)
T ss_dssp --------------------------------------------------------------------SEB---------
T ss_pred --------------------------------------------------------------------CCc---------
Confidence 245
Q ss_pred ccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccC-CCCcccccCCCC
Q psy246 173 RNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRH-PGTQECYRFCPP 251 (615)
Q Consensus 173 RdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~-~g~~~g~~l~~P 251 (615)
|| + +.+++++|++|+|+|||||||||||||||+|+|| +|+.+|.+|++|
T Consensus 64 ----------------Hf---------i-----~~~~~~~~lv~k~~~iPlEvIvR~~a~GS~~~ry~~G~~~G~~l~~p 113 (248)
T PF01259_consen 64 ----------------HF---------I-----ERLDPREMLVRKCEMIPLEVIVRNYATGSFWRRYEPGVEEGIKLPPP 113 (248)
T ss_dssp ----------------SE---------E-----EEESSSEEEEE-EEE-SEEEEEEEEE-HHHHHHHHHTEETTEEEEEE
T ss_pred ----------------cc---------c-----ccCCCceEEEEeccccceeEEEeeeecceeeecccCCcccCcccCCc
Confidence 87 6 5556899999999999999999999999999999 999999999999
Q ss_pred ceeeeecCCCCCCCCCCHH-HHHhccCCC----CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcc
Q psy246 252 CQETFFKDDANHDPQWSDE-QILSANLDN----VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVS 326 (615)
Q Consensus 252 i~e~~~K~d~~~D~~i~~~-~~~~~~~~~----~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~ 326 (615)
++|+++|+|+.+||.++.+ +...+++.. ++++|++.|+++|++||++|+++|+++||+|||+|+|||+
T Consensus 114 ~~e~~~k~d~l~dP~~k~e~~~~~l~~~~~~~~i~~~e~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~------- 186 (248)
T PF01259_consen 114 LVEFFYKDDPLFDPLTKEEEHDEALGIASAQEIIGEEELEEIREIALKINEILEEYFAKRGLILVDFKLEFGR------- 186 (248)
T ss_dssp EEEEEEEEGGGTS-EE-HHSHHHHTTSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEE-------
T ss_pred hhhhcccCCCCCCCcccchhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeeeEEEEe-------
Confidence 9999999999999999999 999987522 3459999999999999999999999999999999999994
Q ss_pred cCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEeccc-CCCcccccCCCccc----
Q psy246 327 FFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVID-SDSWRLWPEGKKEL---- 401 (615)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~it-pDs~Rlw~~~~~~~---- 401 (615)
+.+|+|+|+|||+ |||||||+.++++.
T Consensus 187 ------------------------------------------------~~~G~ivL~DEi~TpDs~Rlw~~~~~e~g~~~ 218 (248)
T PF01259_consen 187 ------------------------------------------------DEDGEIVLADEISTPDSSRLWDKETYEKGENQ 218 (248)
T ss_dssp ------------------------------------------------ETTTEEEEES--SSTTTEEEEETTT--BTS--
T ss_pred ------------------------------------------------cCCCcEEEEEEecCCCceeEEEcCCCcccccc
Confidence 5689999999998 99999999998875
Q ss_pred -ccccccccccccccccccchhhhhHHHHHHHhh
Q psy246 402 -MKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 402 -~~DKq~~R~~~~~~~~~l~~VkenY~eVA~~L~ 434 (615)
++|||+||+ ++.+...+|++++.++.
T Consensus 219 ~~lDK~~~R~-------~l~~~~~~y~~v~~~l~ 245 (248)
T PF01259_consen 219 ESLDKDFFRD-------WLGDLGEAYEEVLPRLP 245 (248)
T ss_dssp --TSTHHHHT-------THSCHHHHHHHHHHHHT
T ss_pred cccccccccc-------cccccchhhHHHHhhcc
Confidence 689999997 47888999999998874
No 11
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=100.00 E-value=2.1e-54 Score=454.40 Aligned_cols=236 Identities=24% Similarity=0.308 Sum_probs=204.9
Q ss_pred cccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeec
Q psy246 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLL 91 (615)
Q Consensus 12 ~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~l 91 (615)
=+++||||+|+||++ + +.++++|||++|||||.+ ++|+|||++||+||+++|++|+.
T Consensus 75 l~~lyeGKvKdvY~~-~--d~ll~vfkDriSAFD~~~-~~IpgKG~vln~iS~~wF~~l~~------------------- 131 (370)
T PLN02544 75 LGSRRRGKVRDIYDL-G--DYLVLVTTDRQSAFDRVL-ASIPFKGQVLNQTSAWWFNNTKH------------------- 131 (370)
T ss_pred CccccccccceEEec-C--CeEEEEEeCCcccccccC-CCCCChhHHHHHHHHHHHHHhhC-------------------
Confidence 367999999999997 3 458999999999999986 68999999999999999996420
Q ss_pred CCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccc
Q psy246 92 KSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQV 171 (615)
Q Consensus 92 KdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~ 171 (615)
| |+|
T Consensus 132 -----------------------------------------------~---------------------Ipt-------- 135 (370)
T PLN02544 132 -----------------------------------------------I---------------------TPN-------- 135 (370)
T ss_pred -----------------------------------------------c---------------------CCc--------
Confidence 1 445
Q ss_pred cccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccc----cccCC-------
Q psy246 172 YRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSY----LKRHP------- 240 (615)
Q Consensus 172 fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~----~~r~~------- 240 (615)
|| + +.+++++|+||+|+|||||||||||+|||+ |+||.
T Consensus 136 -----------------H~---------i-----~~~~~~~mlVkk~~~iPlEvVvR~y~tGS~~~slw~~Y~~g~~~~~ 184 (370)
T PLN02544 136 -----------------AL---------V-----SSPDPNVTIAKKCSVFPVEFVVRGYMTGSTSTSLWTVYNKGVRNYC 184 (370)
T ss_pred -----------------ce---------e-----ccCCCceEEEEEeeeeeEEEEEEeeeeccchHHHHHHHhccCcccc
Confidence 77 5 345689999999999999999999999996 77772
Q ss_pred ------CCcccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeee
Q psy246 241 ------GTQECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMK 314 (615)
Q Consensus 241 ------g~~~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K 314 (615)
|+++|++|++|++||+||+|+ |||+||++|++++| +++++|+++|+++|++||++++++|+++|++|||||
T Consensus 185 Gi~lpeGl~eg~kLp~PI~tpstK~d~-hD~~Is~~~i~~~g--~~~~ee~~~i~~~alki~~~l~~~~~~~GiiLvD~K 261 (370)
T PLN02544 185 GNDLPDGMVKNQKLPANILTPTTKAAD-HDVPISPEEIVEEG--LMTQEDFDEVSSKALALFAFGQEVAAEHGLILVDTK 261 (370)
T ss_pred cccCCCCccccCCCCCCeEEEeecccc-CCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 679999999999999999997 99999999999988 499999999999999999999999999999999999
Q ss_pred EeeecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecc-cCCCccc
Q psy246 315 IEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI-DSDSWRL 393 (615)
Q Consensus 315 ~Efg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~i-tpDs~Rl 393 (615)
||||+ +.+|+|+|+||| |||||||
T Consensus 262 ~EFG~-------------------------------------------------------d~~G~IvL~DEI~TPDSsR~ 286 (370)
T PLN02544 262 YEFGK-------------------------------------------------------DADGTILLIDEVHTPDSSRY 286 (370)
T ss_pred EEeeE-------------------------------------------------------CCCCcEEEEEeccCCCceee
Confidence 99994 467999999999 9999999
Q ss_pred ccCCCcc---------ccccccccccccccc-------------ccccchhhhhHHHHHHHhhc
Q psy246 394 WPEGKKE---------LMKDKQVYRNLSNVT-------------AEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 394 w~~~~~~---------~~~DKq~~R~~~~~~-------------~~~l~~VkenY~eVA~~L~~ 435 (615)
|+.++++ .++|||++|+|..-+ ++=...+...|.++.++++.
T Consensus 287 Wd~~tye~~~~~G~~~~s~DKq~vR~wl~~~~~~~~~~~~P~lP~evv~~ts~rY~~~ye~iTG 350 (370)
T PLN02544 287 WLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKDEVLPEAPAELVCELSWRYIKLYETITG 350 (370)
T ss_pred eecCCccccccCCCCCCCcChHHHHHHHHccCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 9988776 589999999985432 11234677788888888864
No 12
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=1.7e-52 Score=440.22 Aligned_cols=249 Identities=20% Similarity=0.305 Sum_probs=209.8
Q ss_pred ccccCccccccccccceeeeccCC-C---------------CeEEEEEccCccccCCcccc-----cccchHHHhHHHHH
Q psy246 6 DLTKNVGDLLIEGKTKKIHLLKSD-P---------------NTVVVINKDRITAGDGARAH-----DLKGKAEIATKTNT 64 (615)
Q Consensus 6 ~~~m~~~~llyEGKaK~Vy~~~~d-p---------------~~vll~fKDdiTA~ng~kk~-----~i~GKG~lnn~iSs 64 (615)
|+.|...+.+|+||+|.||.++++ + +.++++|||++||||+++++ .|+|||++||+||+
T Consensus 13 ~~~~~~~~~vy~GKvr~vY~~~~~~~~~l~~~~~~~~~~~~~l~i~v~~DriSAFD~v~~~~~~~~~IpgKG~vln~iS~ 92 (367)
T PRK13960 13 DLPIRTDKPVHSGKVRSVYWLTEEDSRRLIKEKGYNVPADAPLAIMVISDRISAFDCIWHGEGGLNGVPGKGAALNAISN 92 (367)
T ss_pred CCCCCCCCccccceeeEEEecCCCCcchhhhccccccCCCCCEEEEEEeCCcccccccccCccCCCCCCchhHHHHHHHH
Confidence 566878899999999999999542 3 35699999999999999985 49999999999999
Q ss_pred HHHHHHhccccccceeccCcceeeeecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhcccccee
Q psy246 65 LVFDILNASENVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIK 144 (615)
Q Consensus 65 ~iF~~L~~~evv~RniaaGs~kkry~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaD 144 (615)
++|++|+ ++|
T Consensus 93 ~wF~~l~-----------------------------------------------------------------~~G----- 102 (367)
T PRK13960 93 HWFKLFK-----------------------------------------------------------------ENG----- 102 (367)
T ss_pred HHHHHHH-----------------------------------------------------------------hcC-----
Confidence 9999988 344
Q ss_pred ccCCCccccCCCCCCCC-cccccccccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeee
Q psy246 145 YSEENEYDKIPPGGSGL-RKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPI 223 (615)
Q Consensus 145 eIspDt~RlWd~~~~~i-~T~~~lDKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPl 223 (615)
| +| || + +.+++++|+||+|+||||
T Consensus 103 ----------------I~pn-------------------------H~---------i-----~~~~~~~mlVrk~~~iPi 127 (367)
T PRK13960 103 ----------------LADS-------------------------HI---------L-----DIPHPFVWIVQKARPVMI 127 (367)
T ss_pred ----------------CCCc-------------------------ce---------e-----ccCCCceEEEEEeeeeeE
Confidence 4 46 88 6 345689999999999999
Q ss_pred EEEeeceeeccccccCC-------------CCcccccCCCCceeeeecCC--------CCCCCCCC----HHHHHhccCC
Q psy246 224 EWVTRRLATGSYLKRHP-------------GTQECYRFCPPCQETFFKDD--------ANHDPQWS----DEQILSANLD 278 (615)
Q Consensus 224 E~v~R~~a~GS~~~r~~-------------g~~~g~~l~~Pi~e~~~K~d--------~~~D~~i~----~~~~~~~~~~ 278 (615)
|||||||+|||+|+||. |++++++|++|+++++||++ +.|||+|| .+++.++|
T Consensus 128 EvIvR~y~tGS~~rry~~g~~~~cGi~LpeGl~~~~~L~epi~tpsTK~~~g~~~~~~e~hD~~Is~~~~~~~i~~~~-- 205 (367)
T PRK13960 128 EAICRQYITGSMWRAYSKGEREFCGITLPEGLEKDQKLPELLITPSTKGILTGIPGVPEADDVNISRSDIEANYQAFN-- 205 (367)
T ss_pred EEEEeeeecchhHHHhcccCccccCcccCccccCCCcCCCceEecccccccccccCccccCCCcCCHHHHHHHHHHhc--
Confidence 99999999999999996 36788999999999999998 66999999 55555566
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHH
Q psy246 279 NVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVW 358 (615)
Q Consensus 279 ~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (615)
+++.+|++.|+++++++|++++++|+++|++|||||||||++
T Consensus 206 ~~s~~e~~~~~~l~~~v~~~l~~~~~~~GiiLvDtK~EFG~~-------------------------------------- 247 (367)
T PRK13960 206 FSSADDIDLYEKLLKEGFKVISDALAKLDQIFVDTKFEFGYV-------------------------------------- 247 (367)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeECccc--------------------------------------
Confidence 489999999999999999999999999999999999999952
Q ss_pred hhhhhhhhcceeeeeecCC--CCEEEEecc-cCCCcccccCCCcc-----ccccccccccccccc---------------
Q psy246 359 ASLNCVLVDMKIEFGIDNE--GNILVSDVI-DSDSWRLWPEGKKE-----LMKDKQVYRNLSNVT--------------- 415 (615)
Q Consensus 359 ~~~~~~lvd~~~~~g~~~~--g~ivLaD~i-tpDs~Rlw~~~~~~-----~~~DKq~~R~~~~~~--------------- 415 (615)
.+.+ |+|+|+||| ||||||||+..+++ .+ |||++|+|..-+
T Consensus 248 ---------------~d~~g~~~iiL~DEI~TPDSsR~Wd~~~Y~~G~~~~~-dKe~vR~wl~~~~~~~~~~~~k~~~~e 311 (367)
T PRK13960 248 ---------------TDAAGNEKLIYMDEVGTPDSSRIWDGAAYRDGKIVEN-SKEGFRQFLLNHFPDPDILLNKDRMPE 311 (367)
T ss_pred ---------------ccCCCCeeEEEEEecCCCCcccccccccccCCCCCcc-hHHHHHHHHHhcCCCcccccccccccc
Confidence 1223 489999999 99999999987764 46 999999885422
Q ss_pred -----------ccccchhhhhHHHHHHHhhc
Q psy246 416 -----------AEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 416 -----------~~~l~~VkenY~eVA~~L~~ 435 (615)
++=...+.+.|.++.++++.
T Consensus 312 r~~~~~~p~LP~evv~~~s~~Y~~~~e~iTG 342 (367)
T PRK13960 312 REALARDNALPLEAMMDVSRTYTGIAEKITG 342 (367)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 11234577788888888864
No 13
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=3.7e-49 Score=412.83 Aligned_cols=223 Identities=22% Similarity=0.242 Sum_probs=184.9
Q ss_pred ccccceeeeccCCC-----CeEEEEEccCccccC-CcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeee
Q psy246 17 EGKTKKIHLLKSDP-----NTVVVINKDRITAGD-GARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHL 90 (615)
Q Consensus 17 EGKaK~Vy~~~~dp-----~~vll~fKDdiTA~n-g~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~ 90 (615)
.||+|.||.+ +++ |.++++|+|++|||| |++.++|+|||+++|+||+++|++|++.++--. +
T Consensus 1 ~GKvkd~Y~~-~d~~~~~~~~ll~vfsDriSAFD~~v~~~~IpgKG~~l~~iS~~~Fe~l~~~gI~tH-----------~ 68 (341)
T PRK13959 1 MGSVKDFYVD-EEPTETDLGRGRFVFSDRYSVFDWGIMPDEIPDKGASLCTMGAYNFELLEEEGIKTH-----------Y 68 (341)
T ss_pred CCCccEEEEC-CCcccccCCEEEEEEeCCcCCCCccccCCCCCCHhHHHHHHHHHHHHHHHhCCCCcc-----------e
Confidence 3999999999 566 689999999999999 999999999999999999999999997544211 1
Q ss_pred cCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccccc
Q psy246 91 LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQ 170 (615)
Q Consensus 91 lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd 170 (615)
+...+. +.+ .+ +.+
T Consensus 69 i~~~~~--~~~-----------~~--------------------~~~--------------------------------- 82 (341)
T PRK13959 69 IGVVED--GEV-----------VR--------------------LAE--------------------------------- 82 (341)
T ss_pred eccccc--ccc-----------cc--------------------ccc---------------------------------
Confidence 110000 000 00 000
Q ss_pred ccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeee------------------------eeeeEEE
Q psy246 171 VYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVT------------------------MIPIEWV 226 (615)
Q Consensus 171 ~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~------------------------~iPlE~v 226 (615)
..+.+|+|+||+|+ |||||||
T Consensus 83 -----------------------------------~~~~~r~mlVkk~~v~~~~~~~~~~~~~~~~~~~~~~~~iPlEvI 127 (341)
T PRK13959 83 -----------------------------------ASEPPNEMAVKLTQVPDLPFEGGSYDYDAYHEAAGENYLIPLEVI 127 (341)
T ss_pred -----------------------------------ccCCCceEEEEEeeccccccccccccccccccccccCcceeEEEE
Confidence 12235666666665 9999999
Q ss_pred eecee--eccccccC---------CCC------cccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHH
Q psy246 227 TRRLA--TGSYLKRH---------PGT------QECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMK 289 (615)
Q Consensus 227 ~R~~a--~GS~~~r~---------~g~------~~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~ 289 (615)
||||+ +||+++|+ .|+ ++|++|++|++||+||+|+ ||++||.+++.+++ +++++++++|+
T Consensus 128 vR~yl~~~gS~~~r~~~G~v~~~~~Gi~l~~~~~eg~kLp~Pi~e~stK~d~-~D~~Is~~~~~~l~--g~s~~e~~~i~ 204 (341)
T PRK13959 128 FRNYVPVGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEFSTKYEE-QDRYLSRKEADEIA--GLSRAEIEELE 204 (341)
T ss_pred EeeeecCcccHHHhhhcCcccccccCcCCCCCCcccCcCCCCeEEeeecccc-cCCCCCHHHHHHHc--CCCHHHHHHHH
Confidence 99999 99988883 256 8999999999999999999 79999999999976 58999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcce
Q psy246 290 RLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMK 369 (615)
Q Consensus 290 ~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~ 369 (615)
++|++||++++++|+++||+|||+|||||+
T Consensus 205 e~al~i~~~l~~~~~~~GiiLvD~K~EFG~-------------------------------------------------- 234 (341)
T PRK13959 205 ELALKVDEIITEEAEKRGLIHEDGKIEFAL-------------------------------------------------- 234 (341)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeeeECee--------------------------------------------------
Confidence 999999999999999999999999999994
Q ss_pred eeeeecCCCCEEEEecc-cCCCcccccCCCccccccccccccccc
Q psy246 370 IEFGIDNEGNILVSDVI-DSDSWRLWPEGKKELMKDKQVYRNLSN 413 (615)
Q Consensus 370 ~~~g~~~~g~ivLaD~i-tpDs~Rlw~~~~~~~~~DKq~~R~~~~ 413 (615)
+.+|+|+|+||| ||||||||+.+ .++|||+||+|..
T Consensus 235 -----d~~g~ivL~DEI~TPDssRf~y~~---~~lDKq~~R~~l~ 271 (341)
T PRK13959 235 -----YEEREIRVVDVVGTFDENRFSYEG---QELSKEVVRQYYR 271 (341)
T ss_pred -----cCCCCEEEEEECCCCccccccCCC---CccCHHHHHHHHH
Confidence 467999999999 99999998865 3589999998854
No 14
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=365.89 Aligned_cols=152 Identities=27% Similarity=0.299 Sum_probs=147.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
+|+|||||+|||++|++|.++|++|||+|| +|+|||| ||+++.+|+ ++++++|++ ||||+||++
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR---TPe~m~~ya-----------~~a~~~g~~-viIAgAGgA 68 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHR---TPEKMFEYA-----------EEAEERGVK-VIIAGAGGA 68 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccC---CHHHHHHHH-----------HHHHHCCCe-EEEecCcch
Confidence 899999999999999999999999999999 9999999 999999999 999999998 999999999
Q ss_pred CCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHHHH
Q psy246 522 NGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596 (615)
Q Consensus 522 ~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~ 596 (615)
||||||+|++|++||||||+.+. |+|+|+|++|||+||||+|+ +++.|||++|+|||++.|+.|++||.+||+++
T Consensus 69 AHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~~ 148 (162)
T COG0041 69 AHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREAQ 148 (162)
T ss_pred hhcchhhhhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999975 99999999999999999997 79999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHH
Q psy246 597 YIALNKEDKKSRQ 609 (615)
Q Consensus 597 ~~~~~~~d~~l~~ 609 (615)
.+++.+.+.++++
T Consensus 149 ~~~V~~~~~~l~~ 161 (162)
T COG0041 149 TEEVLEDDEELEE 161 (162)
T ss_pred HHHHHhCchhhhc
Confidence 9999999988764
No 15
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=2.6e-48 Score=367.88 Aligned_cols=150 Identities=30% Similarity=0.335 Sum_probs=145.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC
Q psy246 444 VVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN 522 (615)
Q Consensus 444 V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~ 522 (615)
|+|+|||+||+++|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++++|.+ ||||+|||+|
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHR---tp~~~~~~~-----------~~a~~~g~~-viIa~AG~aa 65 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHR---TPELMLEYA-----------KEAEERGIK-VIIAGAGGAA 65 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECccc---CHHHHHHHH-----------HHHHHCCCe-EEEEeCCccc
Confidence 78999999999999999999999999999 9999999 999999999 999999997 9999999999
Q ss_pred CchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q psy246 523 GLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQTKLY 597 (615)
Q Consensus 523 ~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~~ 597 (615)
|||||+||+|++||||||++++ |+|+||||+|||+|+||+|| +|++|||++|+|||++.|+.||+||+.||++++
T Consensus 66 ~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~~~ 145 (156)
T TIGR01162 66 HLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQK 145 (156)
T ss_pred hhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999775 99999999999999999998 799999999999999999999999999999999
Q ss_pred HHHHHhhHHHH
Q psy246 598 IALNKEDKKSR 608 (615)
Q Consensus 598 ~~~~~~d~~l~ 608 (615)
+++.+++++|+
T Consensus 146 ~~v~~~~~~l~ 156 (156)
T TIGR01162 146 EEVLKKNKKLE 156 (156)
T ss_pred HHHHhhhhccC
Confidence 99999998863
No 16
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type. Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence and gap pattern from a form (see TIGR00081) shared by a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukarote Guillardia theta.
Probab=100.00 E-value=1e-47 Score=403.88 Aligned_cols=243 Identities=23% Similarity=0.305 Sum_probs=206.1
Q ss_pred ceeccCcceeeeecCC----------------CCCCCeEEeccccccCCccCcc-----chhhHHHHHHHHHHHHHHHHH
Q psy246 78 DLLIEGKTKKIHLLKS----------------DPNTVVVINKDRITAGDGARAH-----DLKGKAEIATKTNTLVFDILN 136 (615)
Q Consensus 78 RniaaGs~kkry~lKd----------------D~~~dpli~~D~i~A~d~a~~~-----eI~~k~el~~kin~~lfe~le 136 (615)
..++.||++..|.+.+ |+....|+++|+++|||+..++ .|++||+++++|+.+||+.|+
T Consensus 19 ~~v~~gkvr~vy~l~~~~~~~~~~~~~~~~~~d~~~~i~v~sDriSAFD~i~~~~g~l~~IpgKG~vln~IS~~wF~~l~ 98 (365)
T TIGR02735 19 EPVHSGKVRSVYWLTEEDSRRLIEEKGYPVAHDAPLAIMVISDRISAFDCIWHAEGGLNGVPGKGAALNAISNHWFKLFA 98 (365)
T ss_pred CCcccceeeeeEecCccchhhhhhhccCcCCCCCCEEEEEEeCCcccccccccCcccCCCCCChhHHHHHHHHHHHHHHH
Confidence 4679999999997654 3355789999999999988874 599999999999999999999
Q ss_pred hccccceeccCCCccccCCCCCCCC-cccccccccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEE
Q psy246 137 AAEMSMIKYSEENEYDKIPPGGSGL-RKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLA 215 (615)
Q Consensus 137 ~~gi~LaDeIspDt~RlWd~~~~~i-~T~~~lDKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~ 215 (615)
+.| | +| || + +.+++++|+|
T Consensus 99 ~~G---------------------I~pn-------------------------H~---------i-----~~~~~~~mlV 118 (365)
T TIGR02735 99 EAG---------------------LAES-------------------------HI---------L-----DIPHPFVWIV 118 (365)
T ss_pred HcC---------------------CCCc-------------------------ce---------e-----ccCCCCeEEE
Confidence 998 6 68 99 6 4457899999
Q ss_pred eeeeeeeeEEEeeceeeccccccCC-------------CCcccccCCCCceeeeecC--------CCCCCCCCCHHHH--
Q psy246 216 RNVTMIPIEWVTRRLATGSYLKRHP-------------GTQECYRFCPPCQETFFKD--------DANHDPQWSDEQI-- 272 (615)
Q Consensus 216 ~~~~~iPlE~v~R~~a~GS~~~r~~-------------g~~~g~~l~~Pi~e~~~K~--------d~~~D~~i~~~~~-- 272 (615)
|+|+|||||||||||+|||+|+||. |++++++|++|++||+||+ |+.|||+||++++
T Consensus 119 kk~~~iPiEvIvR~y~tGS~~rrY~~g~~~~cGi~LpeGl~~~~~Lpepi~tpstK~~~g~~~g~de~hD~~Is~~~~~~ 198 (365)
T TIGR02735 119 QKAKPVKIEAICRQYITGSMWRAYAKGERVFCGIDLPEGLAKDQRLPELLITPSTKGILEGIPGVPAIDDVNITRADIER 198 (365)
T ss_pred EEcceeeEEEEEeeeecchhHHHhcccCCcccCccCCccccCCCcCCCCeechhhcccccCccCccccCCCCCCHHHHHH
Confidence 9999999999999999999999995 6789999999999999998 6679999999555
Q ss_pred --HhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccchhhhhhccccchhhHH
Q psy246 273 --LSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKL 350 (615)
Q Consensus 273 --~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (615)
.+++ +++.+|++.|+++++++|++++++|+++|++|||||||||++
T Consensus 199 ~i~~~~--~~~~~ei~~i~~~~~~v~~~l~~~~~~~GiiLvDtK~EFG~~------------------------------ 246 (365)
T TIGR02735 199 NWSAFN--FEQPEDIDHYERLLREGFAVISDRLSKLGQLFVDTKFEFGYV------------------------------ 246 (365)
T ss_pred HHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeeECccc------------------------------
Confidence 4456 489999999999999999999999999999999999999952
Q ss_pred HHHHHHHHhhhhhhhhcceeeeeecCCC--CEEEEecc-cCCCcccccCCCccc-----ccc---cccccccccc-----
Q psy246 351 LEILEKVWASLNCVLVDMKIEFGIDNEG--NILVSDVI-DSDSWRLWPEGKKEL-----MKD---KQVYRNLSNV----- 414 (615)
Q Consensus 351 ~~~~~~~~~~~~~~lvd~~~~~g~~~~g--~ivLaD~i-tpDs~Rlw~~~~~~~-----~~D---Kq~~R~~~~~----- 414 (615)
.+.+| +|+|+||| ||||||||+++.|+. +.+ ||++|+|..-
T Consensus 247 -----------------------~d~~G~~~IiLiDEI~TPDSsR~Wd~~~Y~~G~~~~~ske~~rQ~lr~~~~~~~~~~ 303 (365)
T TIGR02735 247 -----------------------TDVEGTRKLIYMDEVGTPDSSRIWDAGAYAQGKIVENSKEGFRQALLNWFPDPDILL 303 (365)
T ss_pred -----------------------ccCCCCeeEEEEEecCCCCcccccccccccCCCCCccccHHHHHHHHHhhhccCccc
Confidence 12356 89999999 999999999887642 223 9999988532
Q ss_pred -----------------cccccchhhhhHHHHHHHhhc
Q psy246 415 -----------------TAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 415 -----------------~~~~l~~VkenY~eVA~~L~~ 435 (615)
+++=...+.+.|.++.++++.
T Consensus 304 ~k~~~~~r~~~~~~p~LP~evv~~~s~~Y~~~~e~iTG 341 (365)
T TIGR02735 304 NKDRMVERAALARDNALPQEMLMDVSETYLGIAEKITG 341 (365)
T ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 222235677888888888864
No 17
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=1.6e-46 Score=419.12 Aligned_cols=324 Identities=21% Similarity=0.261 Sum_probs=253.5
Q ss_pred ccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCC
Q psy246 244 ECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEG 323 (615)
Q Consensus 244 ~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~ 323 (615)
.|.....|++|..+++...+ -.+.+ . .++++..+++++++.++++.| ...|+..+||++ +++|
T Consensus 217 ~G~i~~~p~~E~~~~~~~~~-~~~~P-----a---~l~~~~~~~~~~~A~~~~~aL----g~~Gv~~vEffv----~~dG 279 (577)
T PLN02948 217 DGSTRCYPVVETIHKDNICH-VVEAP-----A---NVPWKVAKLATDVAEKAVGSL----EGAGVFGVELFL----LKDG 279 (577)
T ss_pred CCCEEEecCcccEEECCeeE-EEEEC-----C---CCCHHHHHHHHHHHHHHHHHh----CCCeEEEEEEEE----cCCC
Confidence 44444457777766543221 00101 1 157777888999999988887 368888888776 4678
Q ss_pred CcccCCCCccch--hhhhhccccchhhHHHHHHHHHHhhhhhhhhcceee---------eeecCC-CCEE-E---Ee-cc
Q psy246 324 KVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIE---------FGIDNE-GNIL-V---SD-VI 386 (615)
Q Consensus 324 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~---------~g~~~~-g~iv-L---aD-~i 386 (615)
++.+++.+|+++ +|.+.++|..+||+ .++++.+|.+|-+.... .|.+.. +.+. . .+ ..
T Consensus 280 ~v~v~EInpRpg~sGh~t~ea~~~s~fe-----~~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~ 354 (577)
T PLN02948 280 QILLNEVAPRPHNSGHYTIEACYTSQFE-----QHLRAVLGLPLGDTSMKVPAAIMYNILGEDEGEAGFRLAHQLMGRAL 354 (577)
T ss_pred cEEEEEEeCCCCCCCceeeecccCCHHH-----HHHHHHcCCCCCCccccCCcEEEEEEeccccccccccchhhHHHHHh
Confidence 899999999999 89999999999998 78999999999875432 121100 1011 1 11 11
Q ss_pred c-CCCcccccCCCcccccccccccccccccccc--cchhhhhHHHHHHHhhcc---cCCCCCeEEEEeCCCCCHHHHHHH
Q psy246 387 D-SDSWRLWPEGKKELMKDKQVYRNLSNVTAEG--LNQVKLNFTWIADTLASV---KRPTDNLVVLALGSSSDLPFANKI 460 (615)
Q Consensus 387 t-pDs~Rlw~~~~~~~~~DKq~~R~~~~~~~~~--l~~VkenY~eVA~~L~~~---k~~~~~~V~Ii~gs~SD~~~~~~~ 460 (615)
. |+.-=.|+.. .+ ...-|.+|+++..| ..++...-+.+.+.+... ..+..++|+|+|||+||+++|++|
T Consensus 355 ~~p~~~v~~ygk-~~----~r~~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~gs~sd~~~~~~~ 429 (577)
T PLN02948 355 NIPGASVHWYGK-PE----MRKQRKMGHITVVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMGSDSDLPTMKDA 429 (577)
T ss_pred hCCCCEEEEecC-CC----CCCCCeeEEEEEecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEECchhhHHHHHHH
Confidence 2 4432333322 11 12238899988665 445555555555555432 223467999999999999999999
Q ss_pred HHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeecc
Q psy246 461 DDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 461 ~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~v 539 (615)
..+|++|||+++ +|+|||| +|+++.+|+ ++++.+|++ ||||+|||+|||||||||+|++|||||
T Consensus 430 ~~~l~~~g~~~~~~v~sahr---~~~~~~~~~-----------~~~~~~~~~-v~i~~ag~~~~l~~~~a~~t~~pvi~v 494 (577)
T PLN02948 430 AEILDSFGVPYEVTIVSAHR---TPERMFSYA-----------RSAHSRGLQ-VIIAGAGGAAHLPGMVASMTPLPVIGV 494 (577)
T ss_pred HHHHHHcCCCeEEEEECCcc---CHHHHHHHH-----------HHHHHCCCC-EEEEEcCccccchHHHhhccCCCEEEc
Confidence 999999999999 9999999 999999999 999999998 999999999999999999999999999
Q ss_pred CCCCC---chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy246 540 PPLDS---TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQ 609 (615)
Q Consensus 540 P~~~~---g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~~~~~~~~d~~l~~ 609 (615)
|++++ |+|+||||||||+|+||+|| +|++|||++|+|||++.|+.||+||+.||.++.+++.+++++|++
T Consensus 495 p~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (577)
T PLN02948 495 PVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVLEKAEKLEE 569 (577)
T ss_pred CCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 99875 99999999999999999998 699999999999999999999999999999999999999999975
No 18
>KOG2835|consensus
Probab=100.00 E-value=2e-47 Score=399.74 Aligned_cols=352 Identities=41% Similarity=0.628 Sum_probs=316.4
Q ss_pred ccceeccCcceeeeecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCC
Q psy246 76 VGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIP 155 (615)
Q Consensus 76 v~RniaaGs~kkry~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd 155 (615)
.+..+|.|+++.+|.+..-+....++.+|+|++++.+++.+|++|+.++++++..+|+.|...|
T Consensus 11 ~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a~~I~~ka~il~k~t~~~F~~l~~~g---------------- 74 (373)
T KOG2835|consen 11 LGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMANSIQGKAAILNKITSFVFELLGEAG---------------- 74 (373)
T ss_pred hhhhhheeeeeeecccccCCCeeEEeeccccchhhhhhhcchhhHHHHHHHhhhhhHhhhhhhh----------------
Confidence 3467899999999998877788899999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccc
Q psy246 156 PGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSY 235 (615)
Q Consensus 156 ~~~~~i~T~~~lDKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~ 235 (615)
+++ +| . +.++.+.+.+++|.|+|+||++|+.++|||
T Consensus 75 -----v~~-------------------------~~---------~-----~~~~~t~~~~~p~~~~~~~~v~~~~~ts~f 110 (373)
T KOG2835|consen 75 -----IET-------------------------AF---------T-----EQCGETAFEARPCPMTPIEWVTRRCATSSF 110 (373)
T ss_pred -----hhe-------------------------ee---------c-----cccchhhhhcCCCCCCCceeEEeecchhhH
Confidence 666 77 4 455788999999999999999999999999
Q ss_pred cccCCCCcccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeE
Q psy246 236 LKRHPGTQECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKI 315 (615)
Q Consensus 236 ~~r~~g~~~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~ 315 (615)
.+++|++++|++|.+|..+.++|+++.+||.|.++|+......++.++++..|.++.+.+|+.+++.|+..++.++|+|+
T Consensus 111 ~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~~~~ifes~k~~~~~h~~~I~d~~i 190 (373)
T KOG2835|consen 111 EKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKLPLYIFESLKAAWAGHNCAISDMKI 190 (373)
T ss_pred HHhCccCccceeecCccccccccchhhcCcccchhhhhhhhhhhcchhhcccccccccchhhhhhhhhcCCccccccchh
Confidence 99999999999999999999999999999999999997544445899999999999999999999999999999999999
Q ss_pred eeecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEE-ecccCCCcccc
Q psy246 316 EFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVS-DVIDSDSWRLW 394 (615)
Q Consensus 316 Efg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLa-D~itpDs~Rlw 394 (615)
|||.+ -..++++++ |+++.|+||.|
T Consensus 191 e~gv~------------------------------------------------------~~~~~~~~a~~v~~~~~~r~~ 216 (373)
T KOG2835|consen 191 EFGVD------------------------------------------------------VTLGEIVLASDVIDNDSWRMW 216 (373)
T ss_pred hhccc------------------------------------------------------hhhhhhhhhhcccchhheEEc
Confidence 99952 136889999 99999999999
Q ss_pred cCCCcccccccccccccccccccccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEE
Q psy246 395 PEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQI 474 (615)
Q Consensus 395 ~~~~~~~~~DKq~~R~~~~~~~~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V 474 (615)
+.++...|.||++|+++.++|.+++.-+.++|.|+..+..
T Consensus 217 ~~~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a---------------------------------------- 256 (373)
T KOG2835|consen 217 PDGDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVMSRYA---------------------------------------- 256 (373)
T ss_pred ccCCcceeeeeeEEeccccCCccceEEEeecCchhHhhhh----------------------------------------
Confidence 9999999999999999888887777666666666655443
Q ss_pred EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC---chhhhhh
Q psy246 475 LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS---TGRDVWS 551 (615)
Q Consensus 475 ~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S 551 (615)
..+..+|+. ++||.||.++|+|++|++.+..| |+|+... |.++++|
T Consensus 257 ----------------------------~~a~~~~~~-~~iaga~~~~~~p~~v~a~f~~~--gvp~~~~~~dg~~~~l~ 305 (373)
T KOG2835|consen 257 ----------------------------TSAKSRGVV-LWIAGAYKAGHEPLMVDAEFERP--GVPVVFVAVDGRDNLLS 305 (373)
T ss_pred ----------------------------hhcccCceE-EEEeccCCCCCChhhHHhhcccc--Ccceeeeeccccccccc
Confidence 333334665 99999999999999999999999 9998765 9999999
Q ss_pred hhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy246 552 SLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQENQ 612 (615)
Q Consensus 552 ~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~~~~~~~~d~~l~~~~~ 612 (615)
+||||.|+||+|+ .+|.|||++||+||+..|+.||.|++.|+.++++.+.++++||+++..
T Consensus 306 ~V~~~~~~~~~~v~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l~~~~~~~~~~~Kle~~~~ 368 (373)
T KOG2835|consen 306 IVQMPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQLNQQIIILNKDRKLETVGW 368 (373)
T ss_pred ceeccCCccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcccccHHHHHHhhhHhhccC
Confidence 9999999999886 799999999999999999999999999999999999999999998754
No 19
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=8.6e-45 Score=342.84 Aligned_cols=144 Identities=32% Similarity=0.395 Sum_probs=126.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|+|+|||+||+++++|+..+|++||++|+ +|+|||| +|+++.+++ ++++.++++ ||||+||+
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR---~p~~l~~~~-----------~~~~~~~~~-viIa~AG~ 65 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHR---TPERLLEFV-----------KEYEARGAD-VIIAVAGM 65 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTT---SHHHHHHHH-----------HHTTTTTES-EEEEEEES
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccC---CHHHHHHHH-----------HHhccCCCE-EEEEECCC
Confidence 5899999999999999999999999999999 9999999 999999999 999988998 99999999
Q ss_pred CCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q psy246 521 SNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQTK 595 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~ 595 (615)
+||||||+||+|++||||||++++ |+|+|+|++|||+|+||+|+ +|++|||++|+|||++.|+.+|+||+.||++
T Consensus 66 ~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~ 145 (150)
T PF00731_consen 66 SAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREK 145 (150)
T ss_dssp S--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999986 89999999999999999998 5999999999999999999999999999999
Q ss_pred HHHHH
Q psy246 596 LYIAL 600 (615)
Q Consensus 596 ~~~~~ 600 (615)
+.+++
T Consensus 146 ~~~~v 150 (150)
T PF00731_consen 146 MKEKV 150 (150)
T ss_dssp HHHHH
T ss_pred HHccC
Confidence 98875
No 20
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.95 E-value=6.6e-29 Score=245.95 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=119.4
Q ss_pred hHHHHHHHhhcccCC----CCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-----EEEecccCCcchHHHHHHHHhhH
Q psy246 425 NFTWIADTLASVKRP----TDNLVVLALGSSSDLPFANKIDDANHDPQWSDE-----QILSANLDNVARDEVQIMKRLSL 495 (615)
Q Consensus 425 nY~eVA~~L~~~k~~----~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-----~V~saHR~~~~p~~~~~~~~~~~ 495 (615)
.|++.++.+....++ ..++|+|++++|||+|+++||+.+++.+|+++. +|++.|| ....+.++
T Consensus 97 ~y~e~ar~~~i~~~~~~~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHR---Ll~~l~r~----- 168 (254)
T COG1691 97 EYNEAARTLAIKDPNYEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHR---LLSALKRL----- 168 (254)
T ss_pred EEcccCcEEEecCCCCCcccCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHh---hhhHHHHH-----
Confidence 677777777554442 357899999999999999999999999999976 8999999 44444333
Q ss_pred HHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC------chhhhhhhhcC-CCCceeeeecChh
Q psy246 496 VVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS------TGRDVWSSLNL-PAGIACSTVTAPS 568 (615)
Q Consensus 496 ~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~------g~~~l~S~lqm-p~Gv~v~tv~~~~ 568 (615)
..++.+ ++|++|||+++||+||||+++.||||||+|.+ |..+|++|||+ .|||.|+|||||+
T Consensus 169 ----------~~~~~~-~lIVvAGMEGaLPsvvagLvD~PVIavPTsVGYG~g~gGiaaLltMLqSCspGv~VVNIdNGf 237 (254)
T COG1691 169 ----------KIEDAD-VLIVVAGMEGALPSVVAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQSCSPGVGVVNIDNGF 237 (254)
T ss_pred ----------HhhCCC-eEEEEcccccchHHHHHhccCCCeEecccccccCcCCccHHHHHHHHHhcCCCeEEEEccCch
Confidence 334676 99999999999999999999999999999996 78999999998 7899999999999
Q ss_pred hHHHHHHHHHccC
Q psy246 569 NAALAAAQILAQR 581 (615)
Q Consensus 569 nAa~~A~~Il~~~ 581 (615)
+||.+|+||+...
T Consensus 238 GAa~~A~~I~r~~ 250 (254)
T COG1691 238 GAAVLAVQILRRI 250 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999764
No 21
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type. Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence and gap pattern from a form (see TIGR00081) shared by a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukarote Guillardia theta.
Probab=99.93 E-value=1.7e-26 Score=243.74 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=130.7
Q ss_pred ccccccccccceeeeccC----------------CCCeEEEEEccCccccCCcccc-----cccchHHHhHHHHHHHHHH
Q psy246 11 VGDLLIEGKTKKIHLLKS----------------DPNTVVVINKDRITAGDGARAH-----DLKGKAEIATKTNTLVFDI 69 (615)
Q Consensus 11 ~~~llyEGKaK~Vy~~~~----------------dp~~vll~fKDdiTA~ng~kk~-----~i~GKG~lnn~iSs~iF~~ 69 (615)
..+-+|+||...||.+++ +++.++++|||++||||+.+++ .|+|||+++|+||+++|++
T Consensus 17 ~~~~v~~gkvr~vy~l~~~~~~~~~~~~~~~~~~d~~~~i~v~sDriSAFD~i~~~~g~l~~IpgKG~vln~IS~~wF~~ 96 (365)
T TIGR02735 17 TDEPVHSGKVRSVYWLTEEDSRRLIEEKGYPVAHDAPLAIMVISDRISAFDCIWHAEGGLNGVPGKGAALNAISNHWFKL 96 (365)
T ss_pred CCCCcccceeeeeEecCccchhhhhhhccCcCCCCCCEEEEEEeCCcccccccccCcccCCCCCChhHHHHHHHHHHHHH
Confidence 346799999999999854 2478999999999999999985 4999999999999999999
Q ss_pred Hhcc--------------------------ccccceeccCcceeeee-----------------------------cCC-
Q psy246 70 LNAS--------------------------ENVGDLLIEGKTKKIHL-----------------------------LKS- 93 (615)
Q Consensus 70 L~~~--------------------------evv~RniaaGs~kkry~-----------------------------lKd- 93 (615)
|+++ |+|+|++++||+.++|. +|.
T Consensus 97 l~~~GI~pnH~i~~~~~~~mlVkk~~~iPiEvIvR~y~tGS~~rrY~~g~~~~cGi~LpeGl~~~~~Lpepi~tpstK~~ 176 (365)
T TIGR02735 97 FAEAGLAESHILDIPHPFVWIVQKAKPVKIEAICRQYITGSMWRAYAKGERVFCGIDLPEGLAKDQRLPELLITPSTKGI 176 (365)
T ss_pred HHHcCCCCcceeccCCCCeEEEEEcceeeEEEEEeeeecchhHHHhcccCCcccCccCCccccCCCcCCCCeechhhccc
Confidence 9862 78999999999999981 354
Q ss_pred -------CCCCCeEEec----cccccCCccCccchhhHHHHHHHHHHHHHHHHHhcc---------------------cc
Q psy246 94 -------DPNTVVVINK----DRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAE---------------------MS 141 (615)
Q Consensus 94 -------D~~~dpli~~----D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~g---------------------i~ 141 (615)
|+.|||+|+. +++.++++++.+++..+.+++.++|.++.++|+++| |+
T Consensus 177 ~g~~~g~de~hD~~Is~~~~~~~i~~~~~~~~~ei~~i~~~~~~v~~~l~~~~~~~GiiLvDtK~EFG~~~d~~G~~~Ii 256 (365)
T TIGR02735 177 LEGIPGVPAIDDVNITRADIERNWSAFNFEQPEDIDHYERLLREGFAVISDRLSKLGQLFVDTKFEFGYVTDVEGTRKLI 256 (365)
T ss_pred ccCccCccccCCCCCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeeECcccccCCCCeeEE
Confidence 5669999998 788889999999999999999999999999999985 67
Q ss_pred ceecc-CCCccccCCCC
Q psy246 142 MIKYS-EENEYDKIPPG 157 (615)
Q Consensus 142 LaDeI-spDt~RlWd~~ 157 (615)
|+||| ||||||+||.+
T Consensus 257 LiDEI~TPDSsR~Wd~~ 273 (365)
T TIGR02735 257 YMDEVGTPDSSRIWDAG 273 (365)
T ss_pred EEEecCCCCcccccccc
Confidence 78999 99999999975
No 22
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic group of SAICAR synthetases represented by the Drosophila melanogaster, N-terminal, SAICAR synthetase domain of bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs) catalyzes the sixth and seventh steps of the de novo biosynthesis of purine nucleotides (also reported as seventh and eighth steps). SAICAR synthetase converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=99.86 E-value=9.6e-23 Score=207.33 Aligned_cols=120 Identities=27% Similarity=0.392 Sum_probs=110.7
Q ss_pred ccccceeccCcceeee----------------ecCCCCCCCeEEeccccccCCc------cCccchhhHHHHHHHHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH----------------LLKSDPNTVVVINKDRITAGDG------ARAHDLKGKAEIATKTNTLV 131 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------~lKdD~~~dpli~~D~i~A~d~------a~~~eI~~k~el~~kin~~l 131 (615)
|+|+||+++||+.+|| ++|+|++|||+++.||+.++++ ++.++++.+.+++.++|.++
T Consensus 91 EvIvR~~a~GS~~kry~g~~eg~~l~~PivE~~~K~d~~~Dp~I~~~~~~~~~~~~~~~~~t~~e~~~i~~~al~i~~~l 170 (252)
T cd01416 91 EWVCRRIATGSFLKRNPGVKEGYRFSPPKLEFFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMTKSTIAIFEIL 170 (252)
T ss_pred EEEEEeeeecchHhhcCCCCCcccCCCCeeeEEeeCCCCCCCCCCHHHHHHcCCccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 3688999999999999999999 99999999999999999999
Q ss_pred HHHHHhcc------------------ccceeccCCCccccCCCCCCCCcccccccccccccCcccchhhhhhhhhhhhhh
Q psy246 132 FDILNAAE------------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWI 193 (615)
Q Consensus 132 fe~le~~g------------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fRdLg~v~~~y~e~vk~hf~wv 193 (615)
.++|.++| |+|+||||||||||||.++ ...++|||+||++..+..+-++.|+++|+||
T Consensus 171 ~~~~~~~Gi~LvD~K~EFG~~~~~g~ivL~DEisPDs~RlW~~~~----~~~~lDK~~~R~~~~~~~~~~~~v~~~~~~~ 246 (252)
T cd01416 171 EKAWATQDCTLVDMKIEFGVDVTTGEILLADVIDNDSWRLWPSGD----KRLMKDKQVYRNLKEVTDEALQEVKKNYEWV 246 (252)
T ss_pred HHHHHHCCCEEEEEeEEeeEeCCCCeEEEEEEECCCceeeeECCC----CCccCCcHHHhcCcccchHHHHHHHHHHHHH
Confidence 99999986 7788999999999999873 2356999999999999999999999999999
Q ss_pred hhcc
Q psy246 194 ADTL 197 (615)
Q Consensus 194 a~~~ 197 (615)
++..
T Consensus 247 ~~~~ 250 (252)
T cd01416 247 ADKL 250 (252)
T ss_pred HHHh
Confidence 8754
No 23
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=99.85 E-value=3.1e-22 Score=202.43 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=103.1
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.+|| ++|+|.++|||++.+|++.+++++++++..+.+++.++|.++.++|.++
T Consensus 90 EvVvRn~~aGS~~kr~~~~eg~~~~~~l~e~~~k~d~l~dPiv~d~~i~~~~~~~~ee~~~i~~~alkin~~l~~~~~~~ 169 (247)
T COG0152 90 EVVVRNYAAGSLLKRYGIEEGTVLGIPLVEFLYKNDELPDPIVTDEHISALGIATPEEIEEIKELALKINEVLKDLFAKR 169 (247)
T ss_pred EEEEeceecchhHHHhccccceECCCCCccccccchhcCCCccchhhcchhccCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999997 4689999999999999999999999999999999999999999999999
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCccccc-ccccccc-cCcccchhhhhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELM-KDKQVYR-NLSNVTAEGLNQVKLN 189 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~-lDKd~fR-dLg~v~~~y~e~vk~h 189 (615)
| |+|+||||||||||||.. |.++ +|||+|| +++++.+.|.+.+.+-
T Consensus 170 GiilvD~KlEFG~d~~g~iiLaDEisPDs~R~Wd~~-----t~~~~~DKd~~R~~~g~~~~~y~ev~~r~ 234 (247)
T COG0152 170 GIILVDFKLEFGLDEDGEIVLADEISPDSCRLWDAE-----TYEKSLDKDFFRRDLGDLPELYEEVLERL 234 (247)
T ss_pred CcEEEeeeEEeeEcCCCCEEEEeeeCCCcccccccc-----ccccccchHHHhhcCCCccccHHHHHHHH
Confidence 8 777899999999999986 4556 9999999 9999999999977643
No 24
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=99.83 E-value=1.3e-21 Score=196.87 Aligned_cols=109 Identities=22% Similarity=0.172 Sum_probs=100.7
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.+|| ++|+|++|||+++++++.++++++++++..+.+++.++|.++.++|.++
T Consensus 85 EvIvR~~a~GS~~~ry~~~eg~~l~~Pive~~~K~d~~~Dp~i~~~~~~~~~~~~~~e~~~i~~~~l~v~~~l~~~~~~~ 164 (230)
T cd01415 85 EVVVRNIAAGSLVKRLGIEEGTVLDPPIVEFYYKNDELGDPLINEDHILALGLATEEELKEIKELALKINEVLSEFFAEI 164 (230)
T ss_pred EEEEecccccccHhhcCCCCCCcCCCCEEEEEecCCCCCCCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999997 4699999999999999999999999999999999999999999999998
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
| |+|+||||||||||||.+ +++++|||+|| +++++.++|.+-.+
T Consensus 165 gl~LvD~K~EFG~~~~g~ivL~DEispDs~R~w~~~-----~~~~lDK~~~R~~~~~~~~~Y~~v~~ 226 (230)
T cd01415 165 GIILVDFKLEFGRDKDGEIVLADEISPDTCRLWDKE-----TGEKLDKDRFRRDLGDVIEAYEEVLK 226 (230)
T ss_pred CCEEEEEeEEeeEcCCCCEEEEEeeCCCccccccCC-----CCcccCHHHHhcccchHHHHHHHHHH
Confidence 7 778899999999999986 47899999999 99999998865444
No 25
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed
Probab=99.82 E-value=2.9e-21 Score=195.33 Aligned_cols=106 Identities=22% Similarity=0.163 Sum_probs=98.8
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.+|| ++|+|++|||+++++++.++++++++++..+.+++.++|.++.++|.++
T Consensus 90 EvIvR~~a~GS~~~ryg~~eg~~l~~Pive~~~K~d~~~Dp~i~~~~~~~~~~~t~~e~~~i~~~al~i~~~l~~~~~~~ 169 (238)
T PRK09362 90 EVVVRNVAAGSLVKRLGIEEGTVLPPPIVEFYYKNDALGDPMINEDHILALGWATPEELAEIKELALKINDVLKGLFAGA 169 (238)
T ss_pred EEEEeeeeceehhhhcCCccCCcCCCCeEEEEecCCCCCCCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999997 4699999999999999999999999999999999999999999999998
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLN 184 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e 184 (615)
| |+|+||||||||||||.+ +.+++|||+|| ++++|.++|.+
T Consensus 170 Gl~LvD~K~EFG~~~~g~ivL~DEispDs~R~W~~~-----~~~~lDK~~~R~~~~~~~~~Y~~ 228 (238)
T PRK09362 170 GIRLVDFKLEFGRDKDGEIVLADEISPDTCRLWDKE-----TNEKLDKDRFRRDLGGVIEAYEE 228 (238)
T ss_pred CCEEEEEEEEeeEcCCCCEEEEEeeCCcccccccCC-----CCcccChHHHhcccchHHHHHHH
Confidence 7 777899999999999986 47899999999 99999998744
No 26
>KOG2835|consensus
Probab=99.82 E-value=2.4e-20 Score=196.56 Aligned_cols=290 Identities=25% Similarity=0.253 Sum_probs=218.1
Q ss_pred CccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeee
Q psy246 10 NVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIH 89 (615)
Q Consensus 10 ~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry 89 (615)
..+++|++||+|.+|+..+.|+.|+...||+|||+|++.+++|+|||.+.|++|+++|+.|+..++- .
T Consensus 10 ~~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a~~I~~ka~il~k~t~~~F~~l~~~gv~-----------~- 77 (373)
T KOG2835|consen 10 PLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMANSIQGKAAILNKITSFVFELLGEAGIE-----------T- 77 (373)
T ss_pred chhhhhheeeeeeecccccCCCeeEEeeccccchhhhhhhcchhhHHHHHHHhhhhhHhhhhhhhhh-----------e-
Confidence 3578899999999999988899999999999999999999999999999999999999999965441 1
Q ss_pred ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccc
Q psy246 90 LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDK 169 (615)
Q Consensus 90 ~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDK 169 (615)
++.++.+. ++| +..-.. + +
T Consensus 78 ~~~~~~~~---------t~~-----------------------~~~p~~---------------------~--~------ 96 (373)
T KOG2835|consen 78 AFTEQCGE---------TAF-----------------------EARPCP---------------------M--T------ 96 (373)
T ss_pred eeccccch---------hhh-----------------------hcCCCC---------------------C--C------
Confidence 12211110 011 111000 0 1
Q ss_pred cccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCC---------
Q psy246 170 QVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHP--------- 240 (615)
Q Consensus 170 d~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~--------- 240 (615)
+-+||. +.-.|.++.+++..||.|.++|+|-+||+++.+-
T Consensus 97 -------------------~~~~v~------------~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e 145 (373)
T KOG2835|consen 97 -------------------PIEWVT------------RRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDE 145 (373)
T ss_pred -------------------CceeEE------------eecchhhHHHhCccCccceeecCccccccccchhhcCcccchh
Confidence 223442 3346888899999999999999999999999871
Q ss_pred -------------CCcccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy246 241 -------------GTQECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLN 307 (615)
Q Consensus 241 -------------g~~~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g 307 (615)
|+.++++++.+++|..-+...+||-.|++.++... +...+.+...+....-|+..+-...+-|
T Consensus 146 ~~~~~~~~li~r~~~~~~~~~~~~ifes~k~~~~~h~~~I~d~~ie~g----v~~~~~~~~~a~~v~~~~~~r~~~~~d~ 221 (373)
T KOG2835|consen 146 QIIDCAGLLIGRDEVKIMQKLPLYIFESLKAAWAGHNCAISDMKIEFG----VDVTLGEIVLASDVIDNDSWRMWPDGDG 221 (373)
T ss_pred hhhhhhhhhcchhhcccccccccchhhhhhhhhcCCccccccchhhhc----cchhhhhhhhhhcccchhheEEcccCCc
Confidence 35789999999995444456669999999998762 5566666666667777778888888889
Q ss_pred CeEEeeeEeeecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEe-cc
Q psy246 308 CVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSD-VI 386 (615)
Q Consensus 308 ~~lvD~K~Efg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD-~i 386 (615)
.+++|.|+|||++ +...++ ++|+| ..
T Consensus 222 ~im~D~~~~~d~~----------------------------------------------------~vt~e~-~ilv~~~~ 248 (373)
T KOG2835|consen 222 RIMKDKKVYFDLD----------------------------------------------------EVTNEG-LILVDENT 248 (373)
T ss_pred ceeeeeeEEeccc----------------------------------------------------cCCccc-eEEEeecC
Confidence 9999999999953 133334 55555 66
Q ss_pred cCCCcccccCCCcccccccccccccccccccccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhc
Q psy246 387 DSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHD 466 (615)
Q Consensus 387 tpDs~Rlw~~~~~~~~~DKq~~R~~~~~~~~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~ 466 (615)
+||++|+=....+ | |
T Consensus 249 t~~msr~a~~a~~---------~--------~------------------------------------------------ 263 (373)
T KOG2835|consen 249 TPVMSRYATSAKS---------R--------G------------------------------------------------ 263 (373)
T ss_pred chhHhhhhhhccc---------C--------c------------------------------------------------
Confidence 8998887432211 1 1
Q ss_pred cCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC
Q psy246 467 PQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 467 ~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+. .++|||. .+.+-..+. ++++..|.+.++++++|+++.|+.|+++++ .||=.++++.+
T Consensus 264 ----~~~~iaga~~---~~~~p~~v~-----------a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v~~p 323 (373)
T KOG2835|consen 264 ----VVLWIAGAYK---AGHEPLMVD-----------AEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAVNNP 323 (373)
T ss_pred ----eEEEEeccCC---CCCChhhHH-----------hhccccCcceeeeecccccccccceeccCC-ccccccccCCH
Confidence 34 7888999 888888887 888888999999999999999999999999 67766666553
No 27
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes.
Probab=99.78 E-value=4.2e-20 Score=186.80 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=100.1
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.+|| ++|+|+.+||+++.+++.++++++++++..+.+++.++|.++.++|+++
T Consensus 92 EvIvR~~a~GS~~rr~~~~eG~~~~~pl~E~~~k~d~~~Dp~i~~~~~~~~~~~~~~e~~~i~~~a~~v~~~l~~~~~~~ 171 (237)
T TIGR00081 92 EVIVRNIAAGSLLKRLGIPEGLELEQPLVEFIFKPDEVGDPMLNESYAEALGLATEEELERIKELALKVNEVLKKYFDEK 171 (237)
T ss_pred EEEEeccccccceeccCCCCCCcCCCCccceEEcccccCCCCCCHhHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999996 4688999999999999999999999999999999999999999999998
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccc----cccccccc-cCcccchhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKEL----MKDKQVYR-NLSNVTAEGLNQV 186 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~----~lDKd~fR-dLg~v~~~y~e~v 186 (615)
| |+|+||||||||||||.+ +.+ +||||+|| +++++.++|.+-.
T Consensus 172 gl~LvD~K~EFG~~~~g~ivL~DEIsPDs~R~w~~~-----~~~~g~p~ldkdv~r~~~~~~~eaY~~i~ 236 (237)
T TIGR00081 172 GIILVDFKLEFGLDEEGNLILADEVSPDTCRLWDKE-----TYEVGAPKLDKDIFRRTLGKLIEAYETVA 236 (237)
T ss_pred CCEEEEEeEEeeEcCCCCEEEEEEEcCcceeecccc-----cCCcCCCCCCHHHHHhhHHHHHHHHHHHh
Confidence 7 777899999999999986 466 79999999 9999999997643
No 28
>cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. SAICAR synthetase (the PurC gene product) catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=99.74 E-value=5.9e-19 Score=177.89 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=98.6
Q ss_pred ccccceeccCcceeee----------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHh
Q psy246 74 ENVGDLLIEGKTKKIH----------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNA 137 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~ 137 (615)
|+|+||+++||+.+|| ++|+|++|||++++|++.++++++++++..+.+++.++|.++.++|.+
T Consensus 84 EvIvR~~a~GS~~rry~g~~eg~~l~~Pive~~~K~d~~~Dp~i~~~~~~~~~~~~~~e~~~i~~~al~v~~~l~~~~~~ 163 (230)
T cd00476 84 EVVVRNRATGSFVKRYGGFKEGREFPPPLVEFFYKDDAEHDPIVSEDQLERLGFIGKVDVERXKELAVKINTVLKKLFSP 163 (230)
T ss_pred EEEEeeeeccchhhhcCCCCCCCcCCCCEEEeeccCccCCCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 268999999999999999999999999999999999999999999999
Q ss_pred cc-----------------ccceeccCCCccccCCCCCCCCcccccccc-cccc-cCcccchhhhhhhh
Q psy246 138 AE-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDK-QVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 138 ~g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDK-d~fR-dLg~v~~~y~e~vk 187 (615)
+| |+|+||||||||||||.+ +...+|| ++|| +++++.+.|.|-.+
T Consensus 164 ~gl~LvD~K~EFG~~~~g~ivL~DEi~pDs~R~w~~~-----~~~~~~~~~~~~~~~~~~~~~Y~ev~~ 227 (230)
T cd00476 164 AGLELWDFKLEFGLDEEGEIVLGDEISPDSSRLWRKG-----GEPYDKDLFRRRASLGQIIEKYEEVAE 227 (230)
T ss_pred CCCEEEEEeEEeEecCCCCEEEEEEECCCceeeccCc-----ccccCCcccCCHHHHHHHHHHHHHHHH
Confidence 86 778899999999999986 3455666 9999 99999999876443
No 29
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR []. In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see IPR000031 from INTERPRO).; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process; PDB: 2GQS_A 2GQR_B 3KRE_A 3R9R_A 2H31_A 1A48_A 1OBD_A 2CNV_A 1OBG_A 2CNU_A ....
Probab=99.67 E-value=5.4e-18 Score=172.69 Aligned_cols=114 Identities=16% Similarity=0.083 Sum_probs=92.7
Q ss_pred ccccceeccCcceeee-----------------ecCCCCCCCeEEecc-ccccCCccCc------cchhhHHHHHHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH-----------------LLKSDPNTVVVINKD-RITAGDGARA------HDLKGKAEIATKTNT 129 (615)
Q Consensus 74 evv~RniaaGs~kkry-----------------~lKdD~~~dpli~~D-~i~A~d~a~~------~eI~~k~el~~kin~ 129 (615)
|+|+||+++||+.+|| ++|+|+.++|+++.+ |+.++++++. +++..+.+++.++|.
T Consensus 85 EvIvR~~a~GS~~~ry~~G~~~G~~l~~p~~e~~~k~d~l~dP~~k~e~~~~~l~~~~~~~~i~~~e~~~i~~~a~~i~~ 164 (248)
T PF01259_consen 85 EVIVRNYATGSFWRRYEPGVEEGIKLPPPLVEFFYKDDPLFDPLTKEEEHDEALGIASAQEIIGEEELEEIREIALKINE 164 (248)
T ss_dssp EEEEEEEE-HHHHHHHHHTEETTEEEEEEEEEEEEEEGGGTS-EE-HHSHHHHTTSSHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred eEEEeeeecceeeecccCCcccCcccCCchhhhcccCCCCCCCcccchhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 8999999999999996 368899999999999 9999999998 999999999999999
Q ss_pred HHHHHHHhcc-----------------ccceeccC-CCccccCCCCCCCC-cccccccccccc-cCcccchhhhhhhh
Q psy246 130 LVFDILNAAE-----------------MSMIKYSE-ENEYDKIPPGGSGL-RKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 130 ~lfe~le~~g-----------------i~LaDeIs-pDt~RlWd~~~~~i-~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
++.++|.++| |+|+|||| ||||||||.++... .+-.+||||+|| .+++..++|.+-.+
T Consensus 165 ~l~~~~~~~Gl~LvD~K~EFG~~~~G~ivL~DEi~TpDs~Rlw~~~~~e~g~~~~~lDK~~~R~~l~~~~~~y~~v~~ 242 (248)
T PF01259_consen 165 ILEEYFAKRGLILVDFKLEFGRDEDGEIVLADEISTPDSSRLWDKETYEKGENQESLDKDFFRDWLGDLGEAYEEVLP 242 (248)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEETTTEEEEES--SSTTTEEEEETTT--BTS----TSTHHHHTTHSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEeeeEEEEecCCCcEEEEEEecCCCceeEEEcCCCcccccccccccccccccccccchhhHHHHh
Confidence 9999999997 78899999 99999999874100 011249999999 99999999975433
No 30
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=99.58 E-value=3.3e-16 Score=163.02 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=85.1
Q ss_pred ccccceeccCcceeee----------------------------ecCCCCC-CCeEEeccccccCCccCccchhhHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH----------------------------LLKSDPN-TVVVINKDRITAGDGARAHDLKGKAEIA 124 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------------------~lKdD~~-~dpli~~D~i~A~d~a~~~eI~~k~el~ 124 (615)
|+|+||+++||+.++| ++|+|.+ |||+|+++++.+ +++.+++..+.+++
T Consensus 109 EvIvR~y~~GS~~kry~~~~~~~g~~lp~gl~eg~~L~~Pi~e~~tK~d~~~hDp~Is~~~~~~--~~~~~e~~~i~~~a 186 (296)
T PRK13961 109 ECVVRGYLTGSGWKDYQATGTVCGIKLPAGLVEASKLPEPIFTPATKAELGDHDENISFEEVVE--LVGAELAAQLRDAT 186 (296)
T ss_pred EEEEecccchhhHHHhhccCcccCccCCCCccccCcCCCCEEeeeecccccCCCCCCCHHHHHH--HcCHHHHHHHHHHH
Confidence 8999999999999987 2588888 999999999975 89999999999999
Q ss_pred HHHHHHHHHHHHhcc-----------------ccceecc-CCCccccCCCCCCCCc---cccccccccccc
Q psy246 125 TKTNTLVFDILNAAE-----------------MSMIKYS-EENEYDKIPPGGSGLR---KELMKDKQVYRN 174 (615)
Q Consensus 125 ~kin~~lfe~le~~g-----------------i~LaDeI-spDt~RlWd~~~~~i~---T~~~lDKd~fRd 174 (615)
.++|.++.++|.++| |+|+||| |||||||||.++ -. ...++|||+||+
T Consensus 187 l~v~~~l~~~~~~~GiiLvD~K~EFG~~~~g~iiL~DEI~TPDs~R~Wd~~~--~e~g~~~~~lDKq~~R~ 255 (296)
T PRK13961 187 LAIYKEAADYAATRGIIIADTKFEFGLDEDGTLTLMDEVLTPDSSRFWPADS--YQPGTSQPSFDKQFVRD 255 (296)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeEEceecCCCcEEEEeeccCCCcceeccccc--cccCCcccccCHHHHHH
Confidence 999999999999997 6778999 999999999864 11 125799999984
No 31
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=99.56 E-value=7.6e-16 Score=159.33 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=85.7
Q ss_pred ccccceeccCcceeee----------------------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH----------------------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIAT 125 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~ 125 (615)
|+|+||+++||+.++| ++|+|.+|||+|+.+++.++ ++++++..+.+++.
T Consensus 96 E~IvR~y~~GS~~~ry~~~~~~~g~~lp~g~~eg~~L~~Pi~e~~tK~d~~~D~~Is~~~~~~~--~~~~~~~~i~~~al 173 (279)
T cd01414 96 ECIVRGYLTGSGWKEYQKGGTVCGIKLPEGLREAQKLPEPIFTPSTKAEEGHDENISFEEAVEI--IGAELADELRELAL 173 (279)
T ss_pred EEEEeeeecchhHHHhhccCccccccCCCCccccCcCCCCEEecccccccCCCCCCCHHHHHHh--cCHHHHHHHHHHHH
Confidence 8999999999999997 15888899999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhcc-----------------ccceecc-CCCccccCCCCCCC-Ccccccccccccc
Q psy246 126 KTNTLVFDILNAAE-----------------MSMIKYS-EENEYDKIPPGGSG-LRKELMKDKQVYR 173 (615)
Q Consensus 126 kin~~lfe~le~~g-----------------i~LaDeI-spDt~RlWd~~~~~-i~T~~~lDKd~fR 173 (615)
++|.++.+++.++| |+|+||| |||||||||.++.. =..-.++|||+||
T Consensus 174 ~i~~~l~~~~~~~GiiLvD~K~EFG~~~~g~ivL~DEi~TPDs~R~W~~~~~~~g~~~~~lDK~~~R 240 (279)
T cd01414 174 ALYERAAEYAAKRGLILADTKFEFGLDENGEIILIDEVLTPDSSRFWPADSYEPGKEQPSFDKQFVR 240 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEeeeEeeEcCCCcEEEEEecCCCCcceeeeccccccCCCccccChHHHH
Confidence 99999999999997 7778999 99999999987300 0011479999998
No 32
>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=99.55 E-value=1.1e-15 Score=159.82 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=87.5
Q ss_pred ccccceeccCcceeee-----------------------------ecCCCC-CCCeEEeccccccCCccCccchhhHHHH
Q psy246 74 ENVGDLLIEGKTKKIH-----------------------------LLKSDP-NTVVVINKDRITAGDGARAHDLKGKAEI 123 (615)
Q Consensus 74 evv~RniaaGs~kkry-----------------------------~lKdD~-~~dpli~~D~i~A~d~a~~~eI~~k~el 123 (615)
|+|+|++++||+.++| ++|+|. +|||+|+.+++.++++++.+++..+.++
T Consensus 98 EvIvR~y~~GS~~kry~~g~~~~~gi~lp~gl~eg~~Lp~Pi~tpstK~d~g~hD~~Is~~~~~~~~~~~~~~~~~i~~~ 177 (313)
T PRK12607 98 EMVVRGYLAGSTWRLYKAGKREMYGVTLPDGLRENQKLPEPIITPTTKAEEGGHDEPISPEEILAQGLLTPEDWDELSKY 177 (313)
T ss_pred EEEEEeeecchhHHHhhccCCcccCccCCccccccCcCCCCeEeeeecCcccCCCCCCCHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999998 147787 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-----------------ccceecc-CCCccccCCCCCCCCc-------cccccccccccc
Q psy246 124 ATKTNTLVFDILNAAE-----------------MSMIKYS-EENEYDKIPPGGSGLR-------KELMKDKQVYRN 174 (615)
Q Consensus 124 ~~kin~~lfe~le~~g-----------------i~LaDeI-spDt~RlWd~~~~~i~-------T~~~lDKd~fRd 174 (615)
+.++|.++.+++.++| |+|+||| ||||||+||.++ -. ...++|||+||+
T Consensus 178 al~i~~~~~~~~~~~GiiLvD~K~EFG~d~~G~ivL~DEI~TPDssR~W~~~~--y~~~~~~G~~~~slDKq~~R~ 251 (313)
T PRK12607 178 ALALFARGQEMAAERGLILVDTKYEFGKDADGRIVLIDEIHTPDSSRYWYADG--YEERFAAGEPQEQLDKEFVRQ 251 (313)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeEeeeecCCCcEEEEEeccCCCceeeeeccc--cccccccCCCccccCHHHHHH
Confidence 9999999999999997 6678999 999999999864 11 124799999983
No 33
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=99.45 E-value=1.9e-14 Score=152.91 Aligned_cols=98 Identities=14% Similarity=0.043 Sum_probs=82.6
Q ss_pred ccccceeccCcceeee---------------------------------ecCCCCCCCeEEeccccccCCccCccchhhH
Q psy246 74 ENVGDLLIEGKTKKIH---------------------------------LLKSDPNTVVVINKDRITAGDGARAHDLKGK 120 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------------------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k 120 (615)
|+|+||+++||+.+++ ++|+|+ |||+|+.+++.++++++.++++.+
T Consensus 157 EvVvR~y~tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~-hD~~Is~~~i~~~g~~~~ee~~~i 235 (370)
T PLN02544 157 EFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAAD-HDVPISPEEIVEEGLMTQEDFDEV 235 (370)
T ss_pred EEEEEeeeeccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeecccc-CCCCCCHHHHHHhcCCCHHHHHHH
Confidence 8999999999975432 357775 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc-----------------ccceecc-CCCccccCCCCCCCCcc-------ccccccccccc
Q psy246 121 AEIATKTNTLVFDILNAAE-----------------MSMIKYS-EENEYDKIPPGGSGLRK-------ELMKDKQVYRN 174 (615)
Q Consensus 121 ~el~~kin~~lfe~le~~g-----------------i~LaDeI-spDt~RlWd~~~~~i~T-------~~~lDKd~fRd 174 (615)
.+++.++|.++.+++.++| |+|+||| |||||||||.++ ... -.++||+..||
T Consensus 236 ~~~alki~~~l~~~~~~~GiiLvD~K~EFG~d~~G~IvL~DEI~TPDSsR~Wd~~t--ye~~~~~G~~~~s~DKq~vR~ 312 (370)
T PLN02544 236 SSKALALFAFGQEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYWLADS--YEERHAAGLEPENIDKEFLRL 312 (370)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeeEEeeECCCCcEEEEEeccCCCceeeeecCC--ccccccCCCCCCCcChHHHHH
Confidence 9999999999999999997 7778999 999999999764 221 24567776663
No 34
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=99.33 E-value=3.6e-13 Score=143.40 Aligned_cols=85 Identities=13% Similarity=0.052 Sum_probs=76.0
Q ss_pred ccccceeccCcceeeee-----------------------------cCCC--------CCCCeEEe----ccccccCCcc
Q psy246 74 ENVGDLLIEGKTKKIHL-----------------------------LKSD--------PNTVVVIN----KDRITAGDGA 112 (615)
Q Consensus 74 evv~RniaaGs~kkry~-----------------------------lKdD--------~~~dpli~----~D~i~A~d~a 112 (615)
|+|+|++++||+.++|. .|.+ +.|||+|+ .+++.+++++
T Consensus 128 EvIvR~y~tGS~~rry~~g~~~~cGi~LpeGl~~~~~L~epi~tpsTK~~~g~~~~~~e~hD~~Is~~~~~~~i~~~~~~ 207 (367)
T PRK13960 128 EAICRQYITGSMWRAYSKGEREFCGITLPEGLEKDQKLPELLITPSTKGILTGIPGVPEADDVNISRSDIEANYQAFNFS 207 (367)
T ss_pred EEEEeeeecchhHHHhcccCccccCcccCccccCCCcCCCceEecccccccccccCccccCCCcCCHHHHHHHHHHhccC
Confidence 89999999999999983 2444 57999999 8899999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhcc---------------------ccceecc-CCCccccCCCCC
Q psy246 113 RAHDLKGKAEIATKTNTLVFDILNAAE---------------------MSMIKYS-EENEYDKIPPGG 158 (615)
Q Consensus 113 ~~~eI~~k~el~~kin~~lfe~le~~g---------------------i~LaDeI-spDt~RlWd~~~ 158 (615)
+.+++..+.+++.++|.++.++|+++| |+|+||| ||||||+||..+
T Consensus 208 s~~e~~~~~~l~~~v~~~l~~~~~~~GiiLvDtK~EFG~~~d~~g~~~iiL~DEI~TPDSsR~Wd~~~ 275 (367)
T PRK13960 208 SADDIDLYEKLLKEGFKVISDALAKLDQIFVDTKFEFGYVTDAAGNEKLIYMDEVGTPDSSRIWDGAA 275 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeECcccccCCCCeeEEEEEecCCCCccccccccc
Confidence 999999999999999999999999985 6678999 999999999763
No 35
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=99.13 E-value=1.8e-11 Score=129.69 Aligned_cols=118 Identities=8% Similarity=0.019 Sum_probs=95.1
Q ss_pred cccccchHHHhHHHHHHHHHHHhcc------ccccceec--cCcceee----------e---------------------
Q psy246 49 AHDLKGKAEIATKTNTLVFDILNAS------ENVGDLLI--EGKTKKI----------H--------------------- 89 (615)
Q Consensus 49 k~~i~GKG~lnn~iSs~iF~~L~~~------evv~Rnia--aGs~kkr----------y--------------------- 89 (615)
+-++.++...++.--..+|..+... |+|+|+++ +||+.+| +
T Consensus 94 k~~v~~~~~~~~~~~~~~~~~~~~~~~~iPlEvIvR~yl~~~gS~~~r~~~G~v~~~~~Gi~l~~~~~eg~kLp~Pi~e~ 173 (341)
T PRK13959 94 LTQVPDLPFEGGSYDYDAYHEAAGENYLIPLEVIFRNYVPVGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEF 173 (341)
T ss_pred EeeccccccccccccccccccccccCcceeEEEEEeeeecCcccHHHhhhcCcccccccCcCCCCCCcccCcCCCCeEEe
Confidence 3344455555555455566665552 89999999 9999888 3
Q ss_pred ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhcc-----------------ccceecc-CCCcc
Q psy246 90 LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAE-----------------MSMIKYS-EENEY 151 (615)
Q Consensus 90 ~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~g-----------------i~LaDeI-spDt~ 151 (615)
++|+|. +|+.++.+++.++++++.+++..+.+++.++|.++.+++.+.| |+|+||| |||||
T Consensus 174 stK~d~-~D~~Is~~~~~~l~g~s~~e~~~i~e~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~~g~ivL~DEI~TPDss 252 (341)
T PRK13959 174 STKYEE-QDRYLSRKEADEIAGLSRAEIEELEELALKVDEIITEEAEKRGLIHEDGKIEFALYEEREIRVVDVVGTFDEN 252 (341)
T ss_pred eecccc-cCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeECeecCCCCEEEEEECCCCccc
Confidence 246665 5888999999999999999999999999999999999999997 7778999 99999
Q ss_pred ccCCCCCCCCccccccccccccc
Q psy246 152 DKIPPGGSGLRKELMKDKQVYRN 174 (615)
Q Consensus 152 RlWd~~~~~i~T~~~lDKd~fRd 174 (615)
|||.. ..++|||+||+
T Consensus 253 Rf~y~-------~~~lDKq~~R~ 268 (341)
T PRK13959 253 RFSYE-------GQELSKEVVRQ 268 (341)
T ss_pred cccCC-------CCccCHHHHHH
Confidence 99764 35699999984
No 36
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.00094 Score=72.25 Aligned_cols=150 Identities=14% Similarity=0.175 Sum_probs=96.6
Q ss_pred cccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCC
Q psy246 243 QECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNE 322 (615)
Q Consensus 243 ~~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~ 322 (615)
..|+....|+.|..+++..++- .+-+ +. ++++..+..++++.+| -+.|.=.|+.- +||=..++
T Consensus 193 ~~G~~~~yP~~eN~h~~gIl~~-siaP-----a~---i~~~~~~~A~~~a~~i----~~~L~yvGVl~----vE~Fv~~d 255 (375)
T COG0026 193 NDGEVAFYPVAENVHRNGILRT-SIAP-----AR---IPDDLQAQAEEMAKKI----AEELDYVGVLA----VEFFVTPD 255 (375)
T ss_pred CCCCEEEecccceeeecCEEEE-EEec-----Cc---CCHHHHHHHHHHHHHH----HHHcCceEEEE----EEEEEECC
Confidence 4677777899999888754331 0000 00 3444444444444444 44445556655 45555678
Q ss_pred CCcccCCCCccch--hhhhhccccchhhHHHHHHHHHHhhhhhhhhccee-----e---eeecCCCCEEEEecc-cCCCc
Q psy246 323 GKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKI-----E---FGIDNEGNILVSDVI-DSDSW 391 (615)
Q Consensus 323 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~-----~---~g~~~~g~ivLaD~i-tpDs~ 391 (615)
|+++-|+-||++| +|+++.+|..+||+ .|+++..|++|.+++. | +|-+.+-. ..-+.. -|++-
T Consensus 256 g~llvNEiAPRvHNSGH~T~~gc~~SQFE-----qHlRAv~glPLg~~~~~~p~vMvNlLG~~~~~~-~~~~~l~~p~~~ 329 (375)
T COG0026 256 GELLVNEIAPRVHNSGHWTIDGCETSQFE-----QHLRAVLGLPLGSTTLLSPSVMVNLLGDDVPPD-DVKAVLALPGAH 329 (375)
T ss_pred CcEEEeeccCCCCCccccchhhccccHHH-----HHHHHHhCCCCCCccccCceEEEEecCCCCchh-hhHHHHhCCCCE
Confidence 9999999999999 89999999999999 7999999999999776 2 33321100 011222 47777
Q ss_pred ccccCCCcccccccccccccccccccccc
Q psy246 392 RLWPEGKKELMKDKQVYRNLSNVTAEGLN 420 (615)
Q Consensus 392 Rlw~~~~~~~~~DKq~~R~~~~~~~~~l~ 420 (615)
-+|+.... .---|++||+|--+-+
T Consensus 330 lH~YGK~e-----~R~gRKmGHvn~~~~~ 353 (375)
T COG0026 330 LHWYGKAE-----ARPGRKMGHVNVLGSD 353 (375)
T ss_pred EEEecCcc-----CCCCCeeeeEEeecCC
Confidence 77875531 0113888888866554
No 37
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.98 E-value=0.029 Score=59.91 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=67.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.++.||+|+.+--...+++...|+.-|+.+. .....+- +.+.+.+.+ +.+...+++ +|||+.|+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavGGG 87 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGEC---TRAEIERLA-----------EIARDNGAD-VVIGIGGG 87 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcC---CHHHHHHHH-----------HHHhhcCCC-EEEEecCc
Confidence 4799999876655899999999999999875 3344454 667777776 666777888 99999998
Q ss_pred CCC-chhhhcccCCCCeeccCCCCC
Q psy246 521 SNG-LGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~~-L~gvva~~t~~PVI~vP~~~~ 544 (615)
|.. .+-.+|.....|+|.||+..+
T Consensus 88 S~iD~aK~ia~~~~~P~iaIPTTag 112 (351)
T cd08170 88 KTLDTAKAVADYLGAPVVIVPTIAS 112 (351)
T ss_pred hhhHHHHHHHHHcCCCEEEeCCccc
Confidence 654 555777777899999999764
No 38
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=95.57 E-value=0.041 Score=59.05 Aligned_cols=86 Identities=14% Similarity=0.243 Sum_probs=68.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.+|.||++..+--...+++...|+..| .+..+...|. +.+.+.++. +.+.+.+.+ +|||+.|++
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~---t~~~v~~~~-----------~~~~~~~~d-~IIaiGGGs 98 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVVIVDEA---TMEEVEKVE-----------EKAKDVNAG-FLIGVGGGK 98 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEEeCCCC---CHHHHHHHH-----------HHhhccCCC-EEEEeCCch
Confidence 479999999887667888999998888 6664455677 888888777 666666787 999998864
Q ss_pred -CCchhhhcccCCCCeeccCCCC
Q psy246 522 -NGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 522 -~~L~gvva~~t~~PVI~vP~~~ 543 (615)
.-+++++|-....|+|.|||..
T Consensus 99 v~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 99 VIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCc
Confidence 4588888888889999999965
No 39
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.45 E-value=0.034 Score=59.51 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=66.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.++.||+|+.+--...+++...|+.-|+..+ .+.+-+- +.+.+.+.+ +.+.+.+++ +|||+.|+
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIavGGG 87 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGEC---STEEVVKAL-----------CGAEEQEAD-VIIGVGGG 87 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEecCc
Confidence 3688999876655778999999998888765 3434344 677777776 666666787 99999887
Q ss_pred CC-CchhhhcccCCCCeeccCCCCC
Q psy246 521 SN-GLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~-~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+. -.+..+|.....|+|.||+..+
T Consensus 88 s~~D~aK~ia~~~~~p~i~VPTtag 112 (349)
T cd08550 88 KTLDTAKAVADRLDKPIVIVPTIAS 112 (349)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCccc
Confidence 54 4666888778899999999764
No 40
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.26 E-value=0.056 Score=57.82 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=66.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.+|.||+|+.+-....+++...|+.-|+.+. .....|- +-+.+.+.+ +.+...+++ +|||+.|
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~iiavGG 87 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGES---TYENVERLK-----------KNPAVQEAD-MIFAVGG 87 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCC---CHHHHHHHH-----------HHHhhcCCC-EEEEeCC
Confidence 4799999987767778889999998898775 2233444 666666666 666677888 9999988
Q ss_pred CCC-CchhhhcccCCCCeeccCCCCC
Q psy246 520 KSN-GLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~-~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+|. -++..+|.....|+|.||+..+
T Consensus 88 Gs~~D~aK~ia~~~~~p~i~VPTt~g 113 (345)
T cd08171 88 GKAIDTVKVLADKLGKPVFTFPTIAS 113 (345)
T ss_pred cHHHHHHHHHHHHcCCCEEEecCccc
Confidence 754 4666777777899999999654
No 41
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.99 E-value=0.097 Score=56.45 Aligned_cols=88 Identities=10% Similarity=0.192 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.++.||+|..+--...+++...|+.-|+.+. .....+- +-+.+.+.+ +.+...+++ +|||+.|+
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep---~~~~v~~~~-----------~~~~~~~~d-~IIavGGG 94 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGEC---SDNEIDRLV-----------AIAEENGCD-VVIGIGGG 94 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEecCh
Confidence 4789999876655588889999999898774 2233444 556666665 566666787 99999888
Q ss_pred CC-CchhhhcccCCCCeeccCCCCC
Q psy246 521 SN-GLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~-~L~gvva~~t~~PVI~vP~~~~ 544 (615)
|. -++.++|.....|+|.||+..+
T Consensus 95 sv~D~aK~iA~~~~~p~i~IPTtag 119 (366)
T PRK09423 95 KTLDTAKAVADYLGVPVVIVPTIAS 119 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCccc
Confidence 54 5777888888899999999653
No 42
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=94.98 E-value=0.062 Score=57.73 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=65.6
Q ss_pred CeEEEEeCCCCCH-HHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDL-PFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~-~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|+.+-- ...+++...|+.-|+.+... ...|- +.+.+.+.+ +.+...+++ +|||+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IiaiG 88 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNP---TLSNVDAAV-----------AAYREEGCD-GVIAVG 88 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 4799999887655 78889999999888877522 33466 778888777 666667888 999999
Q ss_pred CCCC-CchhhhcccC------------------CCCeeccCCCCC
Q psy246 519 GKSN-GLGPVISGNT------------------CYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~-~L~gvva~~t------------------~~PVI~vP~~~~ 544 (615)
|++. -++-++|... ..|+|.||+..+
T Consensus 89 GGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~g 133 (370)
T cd08551 89 GGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAG 133 (370)
T ss_pred CchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCc
Confidence 8754 3444555443 789999999764
No 43
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=94.88 E-value=0.081 Score=57.23 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=63.0
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSS--DLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~S--D~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.||+|..+ .....+++.+.|+..|+.+... ...|= +-+.+.+.+ +.+.+.+++ +|||+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~Iiav 90 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNP---TTTTVMEGA-----------ALAREEGCD-FVVGL 90 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 47999999876 6788999999999999987521 22343 667777776 666667888 99999
Q ss_pred cCCCCCchh-hhcc-----------------------cCCCCeeccCCCCC
Q psy246 518 AGKSNGLGP-VISG-----------------------NTCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~L~g-vva~-----------------------~t~~PVI~vP~~~~ 544 (615)
.|+|..=.+ .+|. ...+|+|.||+..|
T Consensus 91 GGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 141 (380)
T cd08185 91 GGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAG 141 (380)
T ss_pred CCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCCh
Confidence 998753211 2221 13689999999764
No 44
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=94.32 E-value=0.16 Score=54.13 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=64.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.+|.||+|...--...+++...|+..| .+..+...+= +.+.+.+++ +.+.+.+++ +|||+.|++
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~---~~~~v~~~~-----------~~~~~~~~d-~iIaiGGGs 89 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIVEDA---TYEEVEKVE-----------SSARDIGAD-FVIGVGGGR 89 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEeCCC---CHHHHHHHH-----------HHhhhcCCC-EEEEeCCch
Confidence 478999988776678889999999888 6653333333 666666666 556656787 999888864
Q ss_pred -CCchhhhcccCCCCeeccCCCCC
Q psy246 522 -NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 522 -~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
.-++..+|-....|+|.||+..+
T Consensus 90 ~~D~aK~~a~~~~~p~i~iPTT~~ 113 (339)
T cd08173 90 VIDVAKVAAYKLGIPFISVPTAAS 113 (339)
T ss_pred HHHHHHHHHHhcCCCEEEecCccc
Confidence 45777888778899999998753
No 45
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=94.30 E-value=0.14 Score=55.13 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=61.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.++.||+|+.+= ..+++.+.|+..|+.+... ...|- +-+.+.+.+ +.+.+.+++ +|||+.|
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavGG 86 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNP---DLEDLAAGI-----------RLLREFGPD-AVLAVGG 86 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCc---CHHHHHHHH-----------HHHHhcCcC-EEEEeCC
Confidence 379999988774 6788889999999876522 33455 667777777 666667888 9999999
Q ss_pred CCCC-chhhhccc----------------------CCCCeeccCCCCC
Q psy246 520 KSNG-LGPVISGN----------------------TCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~~-L~gvva~~----------------------t~~PVI~vP~~~~ 544 (615)
++.. .+.++|.. ...|+|.||+..+
T Consensus 87 Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 134 (367)
T cd08182 87 GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAG 134 (367)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCC
Confidence 7542 33344332 3589999999764
No 46
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=94.19 E-value=0.16 Score=54.94 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=63.0
Q ss_pred CeEEEEeCCCCC-HHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD-LPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.||+|..+- ....+++...|++.|+.+... ...|- +.+.+.+.+ +.+...+++ +|||+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiG 88 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEP---TDESVEEGV-----------KLAKEGGCD-VIIALG 88 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 379999987654 347899999999999987522 33455 677777777 666777888 999999
Q ss_pred CCCCCc-hhhhc------------------ccCCCCeeccCCCCC
Q psy246 519 GKSNGL-GPVIS------------------GNTCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~L-~gvva------------------~~t~~PVI~vP~~~~ 544 (615)
|+|..= +-++| ....+|+|.||+..+
T Consensus 89 GGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtag 133 (375)
T cd08194 89 GGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAG 133 (375)
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCc
Confidence 986532 22333 134689999999764
No 47
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=94.15 E-value=0.11 Score=56.28 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=63.3
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSS-DLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~S-D~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|+.- .....+++...|++-|+.+... ...|- +.+.+.+.+ +.+.+.+++ +|||+.
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiG 91 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADP---PEAVVEAAV-----------EAARAAGAD-GVIGFG 91 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 37888887642 5567889999999999877522 22455 777787777 666667888 999999
Q ss_pred CCCCC-chhhhccc------------------CCCCeeccCCCCC
Q psy246 519 GKSNG-LGPVISGN------------------TCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~-L~gvva~~------------------t~~PVI~vP~~~~ 544 (615)
|+|.. .+..+|.. ..+|+|.|||..+
T Consensus 92 GGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTag 136 (376)
T cd08193 92 GGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAG 136 (376)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCc
Confidence 99764 33344442 3689999999763
No 48
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=94.13 E-value=0.12 Score=56.05 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=62.2
Q ss_pred CeEEEEeCCCCC--HHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSD--LPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD--~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.||+|..+- .+..+++.+.|+..|+.+... ...|- +.+.+.+.+ +.++..+++ +|||+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIai 93 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNP---RLETVREGI-----------ELCKEEKVD-FILAV 93 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 379999987554 356789999999999876522 23344 667777777 666677888 99999
Q ss_pred cCCCCCchh-hhcc------------------cCCCCeeccCCCCC
Q psy246 518 AGKSNGLGP-VISG------------------NTCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~L~g-vva~------------------~t~~PVI~vP~~~~ 544 (615)
.|+|..=.+ ++|. ....|+|.||+..+
T Consensus 94 GGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTag 139 (382)
T cd08187 94 GGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAA 139 (382)
T ss_pred CChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCc
Confidence 998754222 3333 24689999999653
No 49
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=94.10 E-value=0.12 Score=56.25 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=60.9
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSS--DLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~S--D~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.||+|..+ -....+++...|+..|+.+... ...+- +.+.+.+.+ +.+++.+++ +|||+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIai 91 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNP---TVDQVDEAA-----------KLGREFGAQ-AVIAI 91 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 37999998664 2566789999999999977521 22344 667777777 666777888 99999
Q ss_pred cCCCCC-chhhhcc-------------------cCCCCeeccCCCC
Q psy246 518 AGKSNG-LGPVISG-------------------NTCYPVINCPPLD 543 (615)
Q Consensus 518 AG~~~~-L~gvva~-------------------~t~~PVI~vP~~~ 543 (615)
.|++.. .+.++|. ....|+|.||+..
T Consensus 92 GGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 137 (383)
T cd08186 92 GGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTH 137 (383)
T ss_pred CCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCC
Confidence 997643 2323332 1257999999965
No 50
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=93.99 E-value=0.12 Score=54.63 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=63.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.++.||+|...--...+++...|++. +.+. .....+- +-+.+.+.+ +.+.+.+++ +|||+.|
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIaiGG 87 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNP---TFEEVKEAV-----------ERARAAEVD-AVIAVGG 87 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCc---CHHHHHHHH-----------HHHHhcCcC-EEEEeCC
Confidence 36888888765448889999999876 6664 2233455 777777776 555556787 9999988
Q ss_pred CC-CCchhhhcccC--CCCeeccCCCCC
Q psy246 520 KS-NGLGPVISGNT--CYPVINCPPLDS 544 (615)
Q Consensus 520 ~~-~~L~gvva~~t--~~PVI~vP~~~~ 544 (615)
++ .-++.++|... ..|+|.|||..+
T Consensus 88 Gs~~D~aK~ia~~~~~~~p~i~iPTt~~ 115 (332)
T cd07766 88 GSTLDTAKAVAALLNRGLPIIIVPTTAA 115 (332)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 75 45677777766 899999999764
No 51
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=93.97 E-value=0.18 Score=53.78 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEec---ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSA---NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~sa---HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~ 514 (615)
.+|.|+++...--.+.+++...|+..|+++. .+.+. +. +.+.+.+++ +.+.+.++ + ++
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~---~~~~v~~~~-----------~~~~~~~~~r~d-~I 85 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESK---SLETVQRLY-----------DQLLEAGLDRSS-TI 85 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCC-EE
Confidence 4799999887665688999999999999876 34432 33 556666665 44544444 5 99
Q ss_pred EEecCCCCC-chhhhcc--cCCCCeeccCCC
Q psy246 515 IAVAGKSNG-LGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 515 Ia~AG~~~~-L~gvva~--~t~~PVI~vP~~ 542 (615)
||+.|++.. +++++|+ ....|+|.|||.
T Consensus 86 IavGGGsv~D~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 86 IALGGGVVGDLAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred EEEcChHHHHHHHHHHHHHccCCCEEEecCc
Confidence 999888554 7777773 457899999995
No 52
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=93.94 E-value=0.13 Score=54.96 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EE-Eecc--cCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QI-LSAN--LDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V-~saH--R~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.||++..+--...+++...|+..|+++. .+ .... . +.+.+.+.+ +.+.. +++ +|||+
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~p---t~~~v~~~~-----------~~~~~-~~d-~IIaI 87 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIA---DEKAVGRVL-----------KELER-DTD-LIIAV 87 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccC---CHHHHHHHH-----------HHhhc-cCC-EEEEE
Confidence 3688999875544447889999999999875 22 2222 4 667776666 54544 677 99999
Q ss_pred cCCCC-CchhhhcccCCCCeeccCCCCC
Q psy246 518 AGKSN-GLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~-~L~gvva~~t~~PVI~vP~~~~ 544 (615)
.|++. -.+..+|.....|+|.||+..|
T Consensus 88 GGGs~~D~aK~vA~~~~~p~i~IPTTag 115 (348)
T cd08175 88 GSGTINDITKYVSYKTGIPYISVPTAPS 115 (348)
T ss_pred CCcHHHHHHHHHHHhcCCCEEEecCccc
Confidence 98754 4677888888899999999753
No 53
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=93.80 E-value=0.52 Score=51.07 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=63.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEe---cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC----CEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILS---ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK----NVV 513 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~s---aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~----~~V 513 (615)
.++.||+++...--+.+++.+.|+..|+++. -+.. .+. +.+.+.++. +.+...++ + +
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~---s~~~v~~~~-----------~~l~~~~~~r~~d-~ 91 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAK---TMDTVLKIV-----------DALDAFGISRRRE-P 91 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCCC-E
Confidence 4789999876655577889999999999876 2333 355 667777665 44444444 7 8
Q ss_pred EEEecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 514 FIAVAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 514 ~Ia~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
|||+.|+ ..-+++++|+ ....|.|.|||.
T Consensus 92 IVaiGGG~v~D~ak~~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 92 VLAIGGGVLTDVAGLAASLYRRGTPYVRIPTT 123 (354)
T ss_pred EEEECCcHHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 9988885 6778999984 678999999994
No 54
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=93.67 E-value=0.24 Score=53.57 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=60.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEE-EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQI-LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V-~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||+|+.+= ..+++...|+..|+.+... ...+= +.+.+.+.+ +.+++.+++ +|||+.|+
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiGGG 85 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEP---SVELVDAAV-----------AEARNAGCD-VVIAIGGG 85 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEecCc
Confidence 479999987663 8889999999999987621 12232 556666666 667777898 99999998
Q ss_pred CCC-chhhhcc----------------------cCCCCeeccCCCCC
Q psy246 521 SNG-LGPVISG----------------------NTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~~-L~gvva~----------------------~t~~PVI~vP~~~~ 544 (615)
|.. .+-++|. ...+|+|.||+..+
T Consensus 86 S~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 132 (374)
T cd08183 86 SVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAG 132 (374)
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCc
Confidence 653 2223332 13689999999754
No 55
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.60 E-value=0.24 Score=52.95 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=64.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEec---ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSA---NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~sa---HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~ 514 (615)
.++.|++++...-.+.+++...|+.-|+++. -+... +. +.+.+.+++ +.+.+.++ + +|
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~---~~~~v~~~~-----------~~~~~~~~~r~d-~I 89 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASK---SLETLEKLY-----------DALLEAGLDRKS-LI 89 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcC---CHHHHHHHH-----------HHHHHcCCCCCC-eE
Confidence 4799999887766899999999999898876 33332 55 667777666 55555555 5 89
Q ss_pred EEecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 515 IAVAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 515 Ia~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
||+.|+ ..-+++++|+ ....|+|.|||.
T Consensus 90 IaiGGGsv~D~ak~vA~~~~rgip~i~VPTT 120 (345)
T cd08195 90 IALGGGVVGDLAGFVAATYMRGIDFIQIPTT 120 (345)
T ss_pred EEECChHHHhHHHHHHHHHhcCCCeEEcchh
Confidence 998887 4567888884 667899999996
No 56
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=93.52 E-value=0.13 Score=55.58 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=61.8
Q ss_pred eEEEEeCCCCCH-HHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSDL-PFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD~-~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|.|++|....- ...+++...|+..|+.+... ...|- +-+.+.+.+ +.+...+++ +|||+.|
T Consensus 30 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavGG 94 (377)
T cd08176 30 KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNP---TITNVKDGL-----------AVFKKEGCD-FIISIGG 94 (377)
T ss_pred eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeCC
Confidence 688888876544 68899999999999987622 22355 777777777 667777888 9999999
Q ss_pred CCC-----Cchhh--------------hcccCCCCeeccCCCCC
Q psy246 520 KSN-----GLGPV--------------ISGNTCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~-----~L~gv--------------va~~t~~PVI~vP~~~~ 544 (615)
+|. +++-+ ......+|+|.||+..+
T Consensus 95 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtag 138 (377)
T cd08176 95 GSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAG 138 (377)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCc
Confidence 876 11110 01135689999999764
No 57
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=93.17 E-value=0.22 Score=53.63 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=61.1
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHhhccCCCeeEEE--ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSS-DLPFANKIDDANHDPQWSDEQIL--SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~S-D~~~~~~~~~~l~~~gi~~~~V~--saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|... .....+++.+.|++-|+++..+. ..|- +-+.+.+.+ +.+...+++ +|||+.
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIaiG 89 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNP---TEAAVEAGL-----------AAYRAGGCD-GVIAFG 89 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 37888887544 34578999999999999875332 3344 666777776 667777888 999999
Q ss_pred CCCCC-chhhhccc----------------------CCCCeeccCCCCC
Q psy246 519 GKSNG-LGPVISGN----------------------TCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~-L~gvva~~----------------------t~~PVI~vP~~~~ 544 (615)
|+|.. .+-.+|.. ...|+|.||+..+
T Consensus 90 GGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 138 (370)
T cd08192 90 GGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAG 138 (370)
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCc
Confidence 97643 22233322 2489999999764
No 58
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=93.15 E-value=0.24 Score=53.70 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=60.7
Q ss_pred eEEEEeCCCCC-HHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD-LPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|.|++|...- ....+++...|++.|+.+... ...|- +-+.+.+.+ +.+...+++ +|||+.|
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IiaiGG 95 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNP---TITVVKAGV-----------AAFKASGAD-YLIAIGG 95 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeCC
Confidence 78899886543 337889999999999987622 22355 667777776 666667888 9999999
Q ss_pred CCCC-chhhhc---c-----------------cCCCCeeccCCCCC
Q psy246 520 KSNG-LGPVIS---G-----------------NTCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~~-L~gvva---~-----------------~t~~PVI~vP~~~~ 544 (615)
+|.. .+=.|| . ....|+|.||+..+
T Consensus 96 GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 141 (379)
T TIGR02638 96 GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAG 141 (379)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCc
Confidence 8754 221111 1 23589999999764
No 59
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=92.96 E-value=0.23 Score=53.03 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=60.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
++.|++|...--...+++.+.|+..++... .+. .|- +.+.+.+.+ +.+...+++ +|||+.|++
T Consensus 25 ~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~~p---~~~~v~~~~-----------~~~~~~~~d-~IIaiGGGs 88 (337)
T cd08177 25 RALVLTTPSLATKLAERVASALGDRVAGTFDGAV-MHT---PVEVTEAAV-----------AAAREAGAD-GIVAIGGGS 88 (337)
T ss_pred eEEEEcChHHHHHHHHHHHHHhccCCcEEeCCCC-CCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeCCcH
Confidence 788999876544478888889987654222 222 344 556666665 666667888 999998875
Q ss_pred C-CchhhhcccCCCCeeccCCCCC
Q psy246 522 N-GLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 522 ~-~L~gvva~~t~~PVI~vP~~~~ 544 (615)
. -++.++|.....|+|.|||..+
T Consensus 89 ~iD~aK~ia~~~~~p~i~IPTtat 112 (337)
T cd08177 89 TIDLAKAIALRTGLPIIAIPTTLS 112 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEcCCch
Confidence 4 4666777777899999998654
No 60
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=92.88 E-value=0.57 Score=50.52 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=63.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEe-c--ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILS-A--NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~s-a--HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~ 514 (615)
.++.|++++...-...+++.+.|+.-|+.+. .+.+ . +. +-+.+.+.+ +.+.+.++ + ++
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~---~~~~v~~~~-----------~~~~~~~~~r~d-~I 96 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYK---SLETLEKIY-----------DALLEAGLDRSD-TL 96 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCC-EE
Confidence 4799999988766799999999999999887 3322 2 34 556666655 44544454 6 88
Q ss_pred EEecCCC-CCchhhhcc--cCCCCeeccCCCC
Q psy246 515 IAVAGKS-NGLGPVISG--NTCYPVINCPPLD 543 (615)
Q Consensus 515 Ia~AG~~-~~L~gvva~--~t~~PVI~vP~~~ 543 (615)
||+.|++ .-+++++|+ ....|+|.|||..
T Consensus 97 IavGGGsv~D~aK~iA~~~~~gip~i~IPTT~ 128 (358)
T PRK00002 97 IALGGGVIGDLAGFAAATYMRGIRFIQVPTTL 128 (358)
T ss_pred EEEcCcHHHHHHHHHHHHhcCCCCEEEcCchh
Confidence 9888874 457777773 5578999999963
No 61
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=92.75 E-value=0.29 Score=53.33 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=60.8
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHHhhccCCCeeEEEe--cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSS-SDLPFANKIDDANHDPQWSDEQILS--ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~-SD~~~~~~~~~~l~~~gi~~~~V~s--aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|+. ......+++.+.|++.|+.+....+ .+= +-+.+.+.+ +.+...+++ +|||+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np---~~~~v~~~~-----------~~~~~~~~D-~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNP---TTENVAAGL-----------KLLKENNCD-SVISLG 96 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCc---CHHHHHHHH-----------HHHHHcCCC-EEEEeC
Confidence 3788888764 3567888999999999997642212 233 667777777 667777898 999999
Q ss_pred CCCCCchh-hhcc------------------cCCCCeeccCCCCC
Q psy246 519 GKSNGLGP-VISG------------------NTCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~L~g-vva~------------------~t~~PVI~vP~~~~ 544 (615)
|+|.-=.+ ++|. ....|+|.||+..+
T Consensus 97 GGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTag 141 (383)
T PRK09860 97 GGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAG 141 (383)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCc
Confidence 98652111 1111 24689999998664
No 62
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=92.63 E-value=0.21 Score=53.82 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=62.9
Q ss_pred CeEEEEeCCCC-C-HHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSS-D-LPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~S-D-~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.||+|..+ . ....+++...|+..|+.+... ...|- +-+.+.+.+ +.+.+.+++ +|||+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIav 90 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENP---SLETIMEAV-----------EIAKKFNAD-FVIGI 90 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEe
Confidence 37999998776 3 446788999999999987532 22344 677777777 777778898 99999
Q ss_pred cCCCCCchh-hhcc-----------------cCCCCeeccCCCCC
Q psy246 518 AGKSNGLGP-VISG-----------------NTCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~L~g-vva~-----------------~t~~PVI~vP~~~~ 544 (615)
.|+|..=.+ .+|. ....|+|.||+..+
T Consensus 91 GGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtag 135 (357)
T cd08181 91 GGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAG 135 (357)
T ss_pred CCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCc
Confidence 999764222 3331 23689999999764
No 63
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.63 E-value=0.19 Score=53.83 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=61.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.++.||++..+=-...++....|+..++.+....+. - +-+.+.+.+ +.+...+++ +|||+.|++
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~~~~~-p---~~~~v~~~~-----------~~~~~~~~D-~iIavGGGs 87 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLRYDGE-C---SEENIERLA-----------AQAKENGAD-VIIGIGGGK 87 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEEeCCC-C---CHHHHHHHH-----------HHHHhcCCC-EEEEeCCcH
Confidence 378999987664456666667776666655312122 4 667777776 666667888 999998875
Q ss_pred -CCchhhhcccCCCCeeccCCCCC
Q psy246 522 -NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 522 -~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
--++..+|.....|+|.||+..+
T Consensus 88 ~~D~aK~ia~~~~~p~i~VPTT~g 111 (347)
T cd08172 88 VLDTAKAVADRLGVPVITVPTLAA 111 (347)
T ss_pred HHHHHHHHHHHhCCCEEEecCccc
Confidence 45778888888899999999753
No 64
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=92.62 E-value=0.25 Score=52.72 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=62.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEE-ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQIL-SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~-saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||+++.+--...+++...|+.-|+.+.-.. .... +-+.+.+.+.+ +.+.. +++ +|||+.|+
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~-~p~~~~v~~~~-----------~~~~~-~~d-~IIaiGGG 90 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLL-IPDEYELGEVL-----------IKLDK-DTE-FLLGIGSG 90 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCC-CCCHHHHHHHH-----------HHhhc-CCC-EEEEECCc
Confidence 3799999987765567899999998888765211 2222 11455566555 44444 676 99999887
Q ss_pred -CCCchhhhcccCCCCeeccCCCC
Q psy246 521 -SNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 521 -~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
..-+++++|-....|+|.||+..
T Consensus 91 sv~D~aK~iA~~~gip~I~VPTT~ 114 (332)
T cd08549 91 TIIDLVKFVSFKVGKPFISVPTAP 114 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCc
Confidence 45688888888899999999974
No 65
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=92.61 E-value=0.18 Score=54.51 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=60.3
Q ss_pred CeEEEEeCCCCC-HHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD-LPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|+..- ....+++...|+..|+.+... ...|- +.+.+.+.+ +.+.+.+++ +|||+.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIaiG 91 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDP---TIENVEAGL-----------ALYRENGCD-AILAVG 91 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 378999887543 346788999999999977522 22344 667777776 666667888 999999
Q ss_pred CCCCC-chhhhccc---C----------------CCCeeccCCCCC
Q psy246 519 GKSNG-LGPVISGN---T----------------CYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~-L~gvva~~---t----------------~~PVI~vP~~~~ 544 (615)
|+|.. .+-.+|.. . ..|+|.||+..+
T Consensus 92 GGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 137 (374)
T cd08189 92 GGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAG 137 (374)
T ss_pred CccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCc
Confidence 98653 22233322 1 279999999764
No 66
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=92.47 E-value=0.23 Score=54.29 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=48.7
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSS-SDLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~-SD~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.||+|.. .+.++.+++.+.|+..|+.+... ...+- +.+.+.+.+ +.+.+.+++ +|||+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiG 86 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDP---SLETVRKGL-----------ELMNSFKPD-TIIALG 86 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 4788998764 34458889999999999887522 23455 667777777 666667888 999999
Q ss_pred CCCC
Q psy246 519 GKSN 522 (615)
Q Consensus 519 G~~~ 522 (615)
|+|.
T Consensus 87 GGS~ 90 (398)
T cd08178 87 GGSP 90 (398)
T ss_pred CccH
Confidence 9764
No 67
>PRK10586 putative oxidoreductase; Provisional
Probab=92.15 E-value=0.55 Score=50.99 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=65.2
Q ss_pred hHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhh
Q psy246 425 NFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMK 504 (615)
Q Consensus 425 nY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~ 504 (615)
.+.++.+.+..+.. .++.||+|+.+=-.....+...|++-|+.+. +.+-+- +.+.+.++. +.
T Consensus 21 a~~~l~~~~~~~g~---~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~-~~~g~~---~~~~v~~l~-----------~~ 82 (362)
T PRK10586 21 SIDHLHDFFTDEQL---SRAVWIYGERAIAAAQPYLPPAFELPGAKHI-LFRGHC---SESDVAQLA-----------AA 82 (362)
T ss_pred HHHHHHHHHHhcCC---CeEEEEEChHHHHHHHHHHHHHHHHcCCeEE-EeCCCC---CHHHHHHHH-----------HH
Confidence 44555555543321 3688999988766666777888888887664 222233 455565554 44
Q ss_pred hhcCCCCEEEEEecCCCCCc-hhhhcccCCCCeeccCCCCC
Q psy246 505 SWSSGKNVVFIAVAGKSNGL-GPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 505 ~~~~~~~~V~Ia~AG~~~~L-~gvva~~t~~PVI~vP~~~~ 544 (615)
.+ .+++ +||++.|++..= +=.+|.....|+|.||+..+
T Consensus 83 ~~-~~~d-~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~ 121 (362)
T PRK10586 83 SG-DDRQ-VVIGVGGGALLDTAKALARRLGLPFVAIPTIAA 121 (362)
T ss_pred hc-cCCC-EEEEecCcHHHHHHHHHHhhcCCCEEEEeCCcc
Confidence 43 4677 999999876543 33666777899999999764
No 68
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=92.12 E-value=0.33 Score=53.04 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=76.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.++.|++|-.+---..++..+.|+..|+...-+..-+= +-+++.++. +.+...+.+ |+|++.|+.
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~a---~~~ev~~~~-----------~~~~~~~~d-~vIGVGGGk 95 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGLVVHVVFVGEA---SEEEVERLA-----------AEAGEDGAD-VVIGVGGGK 95 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCcceeeeecCcc---CHHHHHHHH-----------HHhcccCCC-EEEEecCcH
Confidence 57999999999999999999999999985544444444 778888777 655545677 999998874
Q ss_pred C-CchhhhcccCCCCeeccCCCCC--chhhh-hhhhcCCC
Q psy246 522 N-GLGPVISGNTCYPVINCPPLDS--TGRDV-WSSLNLPA 557 (615)
Q Consensus 522 ~-~L~gvva~~t~~PVI~vP~~~~--g~~~l-~S~lqmp~ 557 (615)
. -.+=++|-...+|+|.|||..| |..+- +|....+.
T Consensus 96 ~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp~aSv~~~~~ 135 (360)
T COG0371 96 TIDTAKAAAYRLGLPFISVPTIASTDAITSPVASVIYNGK 135 (360)
T ss_pred HHHHHHHHHHHcCCCEEEecCccccccccCCceeeEEcCC
Confidence 4 3677888899999999999887 55443 55444333
No 69
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=92.02 E-value=0.45 Score=51.80 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred CeEEEEeCCCCC-HHHHHHHHHHhhccCCCee---EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSD-LPFANKIDDANHDPQWSDE---QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~---~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.||+|+..- ....+++...|+.-|+.+. +|.+ +- +.+.+.+.+ +.+.+.+++ +|||+
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~-~~---~~~~v~~~~-----------~~~~~~~~D-~IIai 86 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLP-DL---PRSELCDAA-----------SAAARAGPD-VIIGL 86 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCC-Cc---CHHHHHHHH-----------HHHHhcCCC-EEEEe
Confidence 378999986654 4788999999999999876 3332 21 233344443 444556787 99999
Q ss_pred cCCCCC-chhhhcccC------------------CCCeeccCCCCC
Q psy246 518 AGKSNG-LGPVISGNT------------------CYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~-L~gvva~~t------------------~~PVI~vP~~~~ 544 (615)
.|+|.. .+-.+|... ..|+|.||+..+
T Consensus 87 GGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 132 (386)
T cd08191 87 GGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAG 132 (386)
T ss_pred CCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCc
Confidence 998653 222333322 689999999763
No 70
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=91.94 E-value=0.24 Score=54.23 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=57.4
Q ss_pred eEEEEeCCC-CCHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSS-SDLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~-SD~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
++.|++|+. ...+..+++.+.|++-|+.+... ...+= +.+.+.+.+ +.+.+.+++ +|||+.|
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P---~~~~v~~~~-----------~~~r~~~~D-~IiavGG 115 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEP---CITDVCAAV-----------AQLRESGCD-GVIAFGG 115 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCc---CHHHHHHHH-----------HHHHhcCcC-EEEEeCC
Confidence 566665532 34567899999999999987511 12222 456677776 667777898 9999999
Q ss_pred CCCCch----hhhccc---------------CCCCeeccCCCCC
Q psy246 520 KSNGLG----PVISGN---------------TCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~~L~----gvva~~---------------t~~PVI~vP~~~~ 544 (615)
+|.-=. ++++.+ ..+|+|.||+..+
T Consensus 116 GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaG 159 (395)
T PRK15454 116 GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAG 159 (395)
T ss_pred hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCc
Confidence 975311 122111 3579999999764
No 71
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=91.84 E-value=0.37 Score=51.20 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=55.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCC-CeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQW-SDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi-~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.++.||+|..+ .+++.+.|+..++ .+..+. +..+-+.+++.+.+ +... +.+ +|||+.|+
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~i~~~~-----------~~~~--~~d-~iIaiGGG 85 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFSAEVEAVE--EVSNSDAEEIGARA-----------RSIP--NVD-AVVGIGGG 85 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccCceEEEec--CCCccCHHHHHHHH-----------Hhcc--CCC-EEEEeCCc
Confidence 47999998776 7788888887777 222222 22111334444333 3222 466 89988886
Q ss_pred -CCCchhhhcccCCCCeeccCCCCC
Q psy246 521 -SNGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 -~~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
..-+++++|.....|+|.|||..+
T Consensus 86 sv~D~aK~vA~~~~~p~i~vPTt~~ 110 (331)
T cd08174 86 KVIDVAKYAAFLRGIPLSVPTTNLN 110 (331)
T ss_pred HHHHHHHHHHhhcCCCEEEecCccc
Confidence 556888999999999999999764
No 72
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=91.81 E-value=0.38 Score=52.06 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=61.9
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSS--DLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~S--D~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.||+|..+ .....+++.+.|+..|+++... ...|- +.+.+.+.+ +.+...+++ +|||+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIav 88 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDP---SVETVLKGA-----------EAMREFEPD-WIIAL 88 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEe
Confidence 47899998654 3577799999999999987522 22355 777787777 667777888 99999
Q ss_pred cCCCCCchh-hhcc---------------------cCCCCeeccCCCCC
Q psy246 518 AGKSNGLGP-VISG---------------------NTCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~L~g-vva~---------------------~t~~PVI~vP~~~~ 544 (615)
.|+|..=.+ ++|. ...+|+|.||+..+
T Consensus 89 GGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtag 137 (375)
T cd08179 89 GGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSG 137 (375)
T ss_pred CCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCc
Confidence 998753111 2211 23579999999764
No 73
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=91.17 E-value=3.7 Score=44.63 Aligned_cols=88 Identities=9% Similarity=0.142 Sum_probs=61.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEec---ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCC--EEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSA---NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKN--VVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~sa---HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~--~V~I 515 (615)
.+|.|++++...-...+++.+.|+..|+++. .+.+. +. +.+.+.++. +.+.+.+++ .+||
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k---~~~~v~~~~-----------~~~~~~~~dr~~~II 89 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHK---TLSTLSDLV-----------ERALALGATRRSVIV 89 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCcEEE
Confidence 4788999876554578899999999999876 44332 44 666666665 444444553 4888
Q ss_pred EecCC-CCCchhhhccc--CCCCeeccCCCC
Q psy246 516 AVAGK-SNGLGPVISGN--TCYPVINCPPLD 543 (615)
Q Consensus 516 a~AG~-~~~L~gvva~~--t~~PVI~vP~~~ 543 (615)
|+.|+ ..-+++++|+. ...|+|.|||..
T Consensus 90 AvGGGsv~D~ak~~A~~~~rgip~I~IPTTl 120 (355)
T cd08197 90 ALGGGVVGNIAGLLAALLFRGIRLVHIPTTL 120 (355)
T ss_pred EECCcHHHHHHHHHHHHhccCCCEEEecCcc
Confidence 88876 45677788753 478999999954
No 74
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=91.15 E-value=0.62 Score=50.64 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=59.3
Q ss_pred eEEEEeCCC-CCHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSS-SDLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~-SD~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|.|++|+. .+.+..+++...|++-|+.+... ...+- +.+.+.+.+ +.+.+.+++ +|||+.|
T Consensus 32 ~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiGG 96 (382)
T PRK10624 32 KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNP---TIEVVKEGV-----------EVFKASGAD-YLIAIGG 96 (382)
T ss_pred EEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeCC
Confidence 788888754 34558899999999999987522 12244 556676666 666667888 9999999
Q ss_pred CCCCchh-hhc---c-----------------cCCCCeeccCCCCC
Q psy246 520 KSNGLGP-VIS---G-----------------NTCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~~L~g-vva---~-----------------~t~~PVI~vP~~~~ 544 (615)
+|..=.+ ++| . ...+|+|.|||..+
T Consensus 97 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTag 142 (382)
T PRK10624 97 GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAG 142 (382)
T ss_pred hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCc
Confidence 7643211 221 1 12479999999764
No 75
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=90.76 E-value=0.57 Score=49.86 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=56.8
Q ss_pred CeEEEEeCCCCC-HHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD-LPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.++.|++|.... .+..+++...|+.- +.+. .-...+. +.+.+.+.+ +.+.+.+++ +||++.
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~d-~IiaiG 86 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDP---PIEVVAKGI-----------KKFLDFKPD-IVIALG 86 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEEC
Confidence 478888876433 34677788888765 5553 1123444 667777776 666667888 999999
Q ss_pred CCCCC-chhhhc---cc----CCCCeeccCCCCC
Q psy246 519 GKSNG-LGPVIS---GN----TCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~-L~gvva---~~----t~~PVI~vP~~~~ 544 (615)
|+|.. .+..+| ++ ...|+|.||+..+
T Consensus 87 GGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtag 120 (332)
T cd08180 87 GGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSG 120 (332)
T ss_pred CchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCc
Confidence 98765 333332 22 2479999999764
No 76
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=90.74 E-value=0.56 Score=50.55 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=60.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhc-cCCCeeEEEe---cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC---CCEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHD-PQWSDEQILS---ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG---KNVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~-~gi~~~~V~s---aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~---~~~V~ 514 (615)
.++.|++++.-.-.+.+++...|+. .++.+. +.+ .+. +.+.+.++. +.+...+ .+ +|
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~~-~~~~~e~~k---~~~~v~~~~-----------~~~~~~~~~r~d-~I 87 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVHIL-VIEGGEEYK---TFETVTRIL-----------ERAIALGANRRT-AI 87 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCceEE-EeCCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCc-EE
Confidence 4789999887766799999999987 676653 333 245 666666655 3333223 66 89
Q ss_pred EEecCCC-CCchhhhcc--cCCCCeeccCCC
Q psy246 515 IAVAGKS-NGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 515 Ia~AG~~-~~L~gvva~--~t~~PVI~vP~~ 542 (615)
||+.|++ .-+++++|+ .-..|.|.|||.
T Consensus 88 IaiGGGsv~D~ak~vA~~~~rgip~i~VPTT 118 (344)
T cd08169 88 VAVGGGATGDVAGFVASTLFRGIAFIRVPTT 118 (344)
T ss_pred EEECCcHHHHHHHHHHHHhccCCcEEEecCC
Confidence 9998874 458888887 457899999995
No 77
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=90.44 E-value=0.28 Score=50.98 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=86.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC-
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK- 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~- 520 (615)
.++.||+|...--...+++.+.|+..|+++..+...+. ..+.+.+.++. +.+...+++ ++|++.|+
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~d-~ii~vGgG~ 86 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVG-DADEDEVEKLV-----------EALRPKDAD-LIIGVGGGT 86 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE----BHHHHHHHH-----------TTS--TT---EEEEEESHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCC-CCCHHHHHHHH-----------HHhcccCCC-EEEEeCCcH
Confidence 47999999998777889999999999999873321111 12555565555 666556787 77776654
Q ss_pred CCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcC---------CCCceeeee-c-----------ChhhHHHHHHHH
Q psy246 521 SNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNL---------PAGIACSTV-T-----------APSNAALAAAQI 577 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqm---------p~Gv~v~tv-~-----------~~~nAa~~A~~I 577 (615)
.+=++=++|..+.+|.|.|||..| |..+-.+.+.. |.-.|.+.+ | ...+.|=+.+.+
T Consensus 87 i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~ 166 (250)
T PF13685_consen 87 IIDIAKYAAFELGIPFISVPTAASHDGFASPVASLTVDDGFKVSYGPAKAPIAIIADTDIIANAPRRLIAAGFGDLISKY 166 (250)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSGGGTSSEEEEEET-TEEEEE-E----SEEEEEHHHHHTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEeccccccccccCCCeeEEecCCCceeecCCCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhh
Confidence 667888999999999999999887 66544444422 344455554 1 234555567889
Q ss_pred HccCCHHHHHHHHH
Q psy246 578 LAQRDFFIWSKLRM 591 (615)
Q Consensus 578 l~~~d~~l~~kl~~ 591 (615)
-++.|+.|..++.+
T Consensus 167 tA~~DW~La~~~~e 180 (250)
T PF13685_consen 167 TALADWKLAHEYGE 180 (250)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHhhh
Confidence 99999999886643
No 78
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=90.22 E-value=0.51 Score=51.22 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=57.5
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHhhccCCCeeEEE--ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSS-DLPFANKIDDANHDPQWSDEQIL--SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~S-D~~~~~~~~~~l~~~gi~~~~V~--saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|+.. +....+++...|+..|+.+.... ..+- +.+.+.+.+ +.+...+++ +|||+.
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIaiG 93 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNP---RDEEVMAGA-----------ELYLENGCD-VIIAVG 93 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 37889988654 33467889999999998875221 1233 556666665 556666787 999999
Q ss_pred CCCCCch----hhhccc---------------CCCCeeccCCCCC
Q psy246 519 GKSNGLG----PVISGN---------------TCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~L~----gvva~~---------------t~~PVI~vP~~~~ 544 (615)
|+|..=. ++++.+ ...|+|.||+..+
T Consensus 94 GGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~g 138 (377)
T cd08188 94 GGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAG 138 (377)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCc
Confidence 9864322 222211 1479999999763
No 79
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=89.78 E-value=0.28 Score=52.72 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=61.5
Q ss_pred eEEEEeCCCCC-HHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD-LPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|.||+|..-. .+.++++.+.|++-|+.+... ...|= +.+.+.+.+ +.+...+++ +|||+.|
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiGG 87 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNP---TLEDVDEAA-----------EQARKFGAD-CIIAIGG 87 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS----BHHHHHHHH-----------HHHHHTTSS-EEEEEES
T ss_pred CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCC---cHHHHHHHH-----------HHHHhcCCC-EEEEcCC
Confidence 89999988322 227899999999999999733 35555 778888777 777777898 9999999
Q ss_pred CCCC----chhhhccc----------------CCCCeeccCCCCC
Q psy246 520 KSNG----LGPVISGN----------------TCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~~----L~gvva~~----------------t~~PVI~vP~~~~ 544 (615)
+|.- .-++..++ ..+|+|.||+..+
T Consensus 88 GS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 88 GSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp HHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred CCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 8642 11222221 1389999999765
No 80
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=89.65 E-value=0.9 Score=50.09 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=48.5
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSS-DLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~S-D~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.|++|... .....+++...|+..|+.+... ...+- +.+.+.+.+ +.+.+.+++ +|||+.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIaiG 88 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEP---TDESFKDAI-----------AFAKKGQFD-AFVAVG 88 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 37888887653 3346799999999999988622 22454 667777766 667777888 999999
Q ss_pred CCCCC
Q psy246 519 GKSNG 523 (615)
Q Consensus 519 G~~~~ 523 (615)
|+|..
T Consensus 89 GGSvi 93 (414)
T cd08190 89 GGSVI 93 (414)
T ss_pred CccHH
Confidence 98653
No 81
>PRK15138 aldehyde reductase; Provisional
Probab=88.97 E-value=0.69 Score=50.57 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=44.6
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSS--DLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~S--D~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.|++|+.| -....+++.+.|+ |+.+... ...|= +.+.+.+.+ +.++..+++ +|||+
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIai 92 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNP---TYETLMKAV-----------KLVREEKIT-FLLAV 92 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 47999998654 2456678888886 6655422 12333 677787777 777777898 99999
Q ss_pred cCCCC
Q psy246 518 AGKSN 522 (615)
Q Consensus 518 AG~~~ 522 (615)
.|+|.
T Consensus 93 GGGS~ 97 (387)
T PRK15138 93 GGGSV 97 (387)
T ss_pred CChHH
Confidence 99764
No 82
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=88.62 E-value=0.53 Score=50.79 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHH
Q psy246 280 VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKV 357 (615)
Q Consensus 280 ~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (615)
++++..+++++++.++.+.|. + .|+..+||.+ +++|++.+++-+|++| +|++..+|..+||+ .|+
T Consensus 221 ~~~~~~~~~~~~a~~i~~~L~-~---~G~~~vEff~----~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~-----~~i 287 (372)
T PRK06019 221 ISAELQAQAEEIASRIAEELD-Y---VGVLAVEFFV----TGDGELLVNEIAPRPHNSGHWTIEACSTSQFE-----QHL 287 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHcC-c---cceeEEEEEE----cCCCeEEEEEecCCccCcccEEhhhcCccHHH-----HHH
Confidence 566777788888888887765 2 5888888775 4678999999999999 68899999999998 788
Q ss_pred Hhhhhhhhhcce
Q psy246 358 WASLNCVLVDMK 369 (615)
Q Consensus 358 ~~~~~~~lvd~~ 369 (615)
++..|.+|-++.
T Consensus 288 ra~~Glpl~~~~ 299 (372)
T PRK06019 288 RAILGLPLGTTR 299 (372)
T ss_pred HHHcCCCCCCcc
Confidence 888898887644
No 83
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=88.26 E-value=1.9 Score=49.28 Aligned_cols=90 Identities=9% Similarity=0.113 Sum_probs=56.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC-
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK- 520 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~- 520 (615)
+++||+..... ...+++...|+..|+.+. .+...--..-+.+.+.++. +.+.+. .....+ ++||+.|+
T Consensus 211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~-------~~l~~~-~~~r~D-~IIAIGGGs 280 (542)
T PRK14021 211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIW-------QRLGNE-GFTRSD-AIVGLGGGA 280 (542)
T ss_pred eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHH-------HHHHhc-CCCCCc-EEEEEcChH
Confidence 57777766553 478889999998888654 4433211000333333332 222221 112466 89988886
Q ss_pred CCCchhhhcc--cCCCCeeccCCC
Q psy246 521 SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 521 ~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
..-+++++|+ .-..|+|.|||.
T Consensus 281 v~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 281 ATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCh
Confidence 5678999997 689999999994
No 84
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=87.77 E-value=2.1 Score=46.66 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=62.8
Q ss_pred hhccCCCeeEE-EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcc-cCCCCeeccCC
Q psy246 464 NHDPQWSDEQI-LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISG-NTCYPVINCPP 541 (615)
Q Consensus 464 l~~~gi~~~~V-~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~-~t~~PVI~vP~ 541 (615)
+..++.+++.+ --.|-..-|.+.+...+ +.+.++|++ +|++||+.+...-|.++ -...||+|+|.
T Consensus 65 ~~~~~~~~~v~~~~~~~~~tTa~DT~~~~-----------r~~~~~gVd--lIvfaGGDGTarDVa~av~~~vPvLGipa 131 (355)
T COG3199 65 AEASGFKYRVIRFQESTPRTTAEDTINAV-----------RRMVERGVD--LIVFAGGDGTARDVAEAVGADVPVLGIPA 131 (355)
T ss_pred HHhhcCcceEEeecccCCCccHHHHHHHH-----------HHHHhcCce--EEEEeCCCccHHHHHhhccCCCceEeecc
Confidence 34566666533 12221112566676666 777788987 89999999999999988 88999999997
Q ss_pred CCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc
Q psy246 542 LDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ 580 (615)
Q Consensus 542 ~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~ 580 (615)
-+. |-+||+- ..|..||.++.+.+.-
T Consensus 132 Gvk----------~~SgvfA---~~P~~aa~l~~~~lkg 157 (355)
T COG3199 132 GVK----------NYSGVFA---LSPEDAARLLGAFLKG 157 (355)
T ss_pred ccc----------eeccccc---cChHHHHHHHHHHhcc
Confidence 552 3333322 3688888888887765
No 85
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.18 E-value=16 Score=40.56 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=34.1
Q ss_pred ccccccchhhhhHHHHHHHhh---cc----cCC---CCCeEEEEeCCCCCHHHHHHHHHHhh
Q psy246 414 VTAEGLNQVKLNFTWIADTLA---SV----KRP---TDNLVVLALGSSSDLPFANKIDDANH 465 (615)
Q Consensus 414 ~~~~~l~~VkenY~eVA~~L~---~~----k~~---~~~~V~Ii~gs~SD~~~~~~~~~~l~ 465 (615)
+.+.|.+.+...|+++-++|. .| +.| .+.+|||||+.++.. .+.+..+++
T Consensus 98 i~~~g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa--~~D~~~~~~ 157 (438)
T PRK00286 98 IEPAGIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAA--IRDILTVLR 157 (438)
T ss_pred eeeCCccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHH--HHHHHHHHH
Confidence 556788888999999888873 22 112 256899999998864 445555553
No 86
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=85.71 E-value=2.1 Score=46.41 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=58.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~Ia 516 (615)
.++.||++..---.+.+.+.+.|+ ++++..+ .-.+. +.+.+.+.. +.+.+.++ + ++||
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~~~~~~~~~e~~k---~l~~v~~~~-----------~~~~~~~~~r~d-~iIa 82 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AAPVIAIDATEENK---SLEAVSSVI-----------ESLRQNGARRNT-HLVA 82 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CCeEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCc-EEEE
Confidence 468888887654447788888776 4444322 22366 777777766 55555666 5 8888
Q ss_pred ecCCC-CCchhhhcc--cCCCCeeccCCCC
Q psy246 517 VAGKS-NGLGPVISG--NTCYPVINCPPLD 543 (615)
Q Consensus 517 ~AG~~-~~L~gvva~--~t~~PVI~vP~~~ 543 (615)
+.|++ .-+++++|+ .-..|.|.+|+.-
T Consensus 83 iGGGsv~D~ak~vA~~~~rgi~~i~iPTTl 112 (346)
T cd08196 83 IGGGIIQDVTTFVASIYMRGVSWSFVPTTL 112 (346)
T ss_pred ECChHHHHHHHHHHHHHHcCCCeEEecccH
Confidence 88875 568888885 4477999999743
No 87
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=85.55 E-value=2.5 Score=46.64 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=62.6
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSS-SDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~-SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.++.||++.. .....++++.+.|+.-|+++. .=...+= +-+.+.+-+ +.+++.+++ +|||+.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P---~~~~v~~~~-----------~~~~~~~~D-~iIalG 94 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEP---TIETVEAGA-----------EVAREFGPD-TIIALG 94 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 3688998876 667899999999999998886 2222232 455555555 667777888 999999
Q ss_pred CCCCC----chhhhcccC---------------CCCeeccCCCCC
Q psy246 519 GKSNG----LGPVISGNT---------------CYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~----L~gvva~~t---------------~~PVI~vP~~~~ 544 (615)
|+|.. +-.+++.+. ..|+|+||+..|
T Consensus 95 GGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaG 139 (377)
T COG1454 95 GGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAG 139 (377)
T ss_pred CccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCc
Confidence 99853 333444432 279999999763
No 88
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=84.89 E-value=25 Score=39.41 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=34.2
Q ss_pred ccccccchhhhhHHHHHHHhh---cc----cCC---CCCeEEEEeCCCCCHHHHHHHHHHhh
Q psy246 414 VTAEGLNQVKLNFTWIADTLA---SV----KRP---TDNLVVLALGSSSDLPFANKIDDANH 465 (615)
Q Consensus 414 ~~~~~l~~VkenY~eVA~~L~---~~----k~~---~~~~V~Ii~gs~SD~~~~~~~~~~l~ 465 (615)
+.+.|++.+...|+++-++|. .| +.| .+.+|||||+.++.. ...+..++.
T Consensus 92 i~~~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa--~~D~~~~~~ 151 (432)
T TIGR00237 92 MQPAGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAA--LADILHILK 151 (432)
T ss_pred eccCChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHH--HHHHHHHHH
Confidence 556789999999999988873 22 112 356899999988753 344445553
No 89
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=83.93 E-value=2.3 Score=51.24 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=47.5
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHhh--ccCCCeeEEEe--cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSS-DLPFANKIDDANH--DPQWSDEQILS--ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~S-D~~~~~~~~~~l~--~~gi~~~~V~s--aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
.+|.||+|+.. .....+++...|+ .-|+.+..... .|- +.+.+.+.+ +.+.+.+++ +|||
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np---~~~~v~~~~-----------~~~~~~~~D-~IIa 545 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDP---TLSTVRKGA-----------ELMRSFKPD-TIIA 545 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCC-EEEE
Confidence 57889987543 3447889999998 77777652222 344 667787777 666777888 9999
Q ss_pred ecCCCC
Q psy246 517 VAGKSN 522 (615)
Q Consensus 517 ~AG~~~ 522 (615)
+.|+|.
T Consensus 546 iGGGSv 551 (862)
T PRK13805 546 LGGGSP 551 (862)
T ss_pred eCCchH
Confidence 999864
No 90
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=81.87 E-value=4.1 Score=44.17 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=52.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcC---CCCEEEEEecC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSS---GKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~---~~~~V~Ia~AG 519 (615)
++.|+++... .. .++.+.|+.-|+.+.......- +-+.+.+.+.+ +.+... +++ +|||+.|
T Consensus 27 ~~lvvtd~~~-~~--~~v~~~L~~~g~~~~~f~~v~~-nPt~~~v~~~~-----------~~~~~~~~~~~D-~IIaiGG 90 (347)
T cd08184 27 PAVFFVDDVF-QG--KDLISRLPVESEDMIIWVDATE-EPKTDQIDALT-----------AQVKSFDGKLPC-AIVGIGG 90 (347)
T ss_pred eEEEEECcch-hh--hHHHHHHHhcCCcEEEEcCCCC-CcCHHHHHHHH-----------HHHHhhCCCCCC-EEEEeCC
Confidence 4667775433 32 6677778888888763222222 33666677776 555554 788 9999999
Q ss_pred CCCCchh-hhcc------------------cCCCCeeccCCCCC
Q psy246 520 KSNGLGP-VISG------------------NTCYPVINCPPLDS 544 (615)
Q Consensus 520 ~~~~L~g-vva~------------------~t~~PVI~vP~~~~ 544 (615)
+|.-=.+ .+|. ....|+|.||+..+
T Consensus 91 GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaG 134 (347)
T cd08184 91 GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSG 134 (347)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCc
Confidence 8642111 1111 12478999999653
No 91
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=80.67 E-value=1.4 Score=43.40 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=54.1
Q ss_pred ccccCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCC
Q psy246 244 ECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEG 323 (615)
Q Consensus 244 ~g~~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~ 323 (615)
.|..-..|++|..+++..++ --|.+ + .++++-.++++++|.+|-+.| .-.|+.- +||-++++|
T Consensus 87 ~G~~~~yp~~en~~~~~il~-~s~~P-----a---~i~~~~~~~a~~ia~~i~~~l----~~vGv~~----VE~Fv~~~g 149 (172)
T PF02222_consen 87 DGEIRFYPPVENVHRDGILH-ESIAP-----A---RISDEVEEEAKEIARKIAEAL----DYVGVLA----VEFFVTKDG 149 (172)
T ss_dssp TSEEEEEEEEEEEEETTEEE-EEEES-----C---SS-HHHHHHHHHHHHHHHHHH----TSSEEEE----EEEEEETTS
T ss_pred CCCEEEEcCceEEEECCEEE-EEECC-----C---CCCHHHHHHHHHHHHHHHHHc----CcEEEEE----EEEEEecCC
Confidence 45455568889998875443 11111 1 145665566666666666655 4567655 566667889
Q ss_pred C-cccCCCCccch--hhhhhccc
Q psy246 324 K-VSFFPQAPMKL--YAIEVSDC 343 (615)
Q Consensus 324 ~-~~~~~~~~~~~--~~~~~~~~ 343 (615)
. ++.+.-||++| +|+++++|
T Consensus 150 ~~v~vNEiaPRpHnSGh~Ti~~c 172 (172)
T PF02222_consen 150 DEVLVNEIAPRPHNSGHWTIEAC 172 (172)
T ss_dssp TEEEEEEEESS--GGGGGHHHHB
T ss_pred CEEEEEeccCCccCcccEeeecC
Confidence 7 99999999999 89999998
No 92
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=79.68 E-value=3.6 Score=44.38 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=52.0
Q ss_pred CeEEEEeCCCC-CHHHHHHHHHHhhccCCCeeEEE---ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC--CCEEEE
Q psy246 442 NLVVLALGSSS-DLPFANKIDDANHDPQWSDEQIL---SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG--KNVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~S-D~~~~~~~~~~l~~~gi~~~~V~---saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~--~~~V~I 515 (615)
.+|.|++|... .....+++...|+.. .+ .+. ..|- +.+.+.+.+ +.+...+ ++ +||
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~-~~~~~v~~~p---t~~~v~~~~-----------~~~~~~~~~~D-~II 85 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR--LA-ALIDDVAPNP---DVAQLDGLY-----------ARLWGDEGACD-LVI 85 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC--cE-EEeCCCCCCc---CHHHHHHHH-----------HHHHhcCCCCC-EEE
Confidence 47899997653 346778888888643 22 222 2244 556666665 4444434 77 999
Q ss_pred EecCCCCCchh-hhccc----------------------CCCCeeccCCCCC
Q psy246 516 AVAGKSNGLGP-VISGN----------------------TCYPVINCPPLDS 544 (615)
Q Consensus 516 a~AG~~~~L~g-vva~~----------------------t~~PVI~vP~~~~ 544 (615)
|+.|+|..=.+ ++|.. ..+|+|.||+..+
T Consensus 86 aiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTag 137 (355)
T TIGR03405 86 ALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAG 137 (355)
T ss_pred EeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCc
Confidence 99999753211 22221 2579999999764
No 93
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=77.83 E-value=2.8 Score=44.66 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHH
Q psy246 280 VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKV 357 (615)
Q Consensus 280 ~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (615)
++++..+++++++.++.+.|. =.|+..+|+++ +++|++.+.+.+|+++ ++.+..+|..+||+ .++
T Consensus 219 ~~~~~~~~~~~~a~~i~~~l~----~~G~~~ve~~~----~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~-----~~~ 285 (352)
T TIGR01161 219 VPDAIQARAEEIARRLMEELG----YVGVLAVEMFV----LPDGRLLINELAPRVHNSGHYTLDGCSTSQFE-----QHL 285 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHcC----ceeEEEEEEEE----eCCCcEEEEEecCCCCCcCcCchhhccccHHH-----HHH
Confidence 455566777887777777664 14777777664 5678899999999999 68899999999997 688
Q ss_pred Hhhhhhhhhccee
Q psy246 358 WASLNCVLVDMKI 370 (615)
Q Consensus 358 ~~~~~~~lvd~~~ 370 (615)
++..|++|-+.+.
T Consensus 286 ra~~g~~l~~~~~ 298 (352)
T TIGR01161 286 RAILGLPLGSTEL 298 (352)
T ss_pred HHHcCCCCCCccc
Confidence 8888888887554
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=77.18 E-value=73 Score=34.80 Aligned_cols=119 Identities=10% Similarity=0.006 Sum_probs=71.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee---EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE---QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~---~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++|+|++.| --.+--+.+.+...|.+.. -+.+. - +++.+.+.+ +...+..+++.|+|.+
T Consensus 256 ~~~i~ii~ng---~G~~~~~~D~l~~~g~~~~NPvDl~g~-~---~~e~~~~aL----------~~l~~d~~vd~vlv~~ 318 (388)
T PRK00696 256 DGNIGCMVNG---AGLAMATMDIIKLYGGEPANFLDVGGG-A---TAERVAEAF----------KIILSDPNVKAILVNI 318 (388)
T ss_pred CCcEEEEECC---chHHHHHHHHHHHcCCCcCCeEEecCC-C---CHHHHHHHH----------HHHhcCCCCCEEEEEe
Confidence 5789999988 3456667888988888765 45443 3 666665544 3333455677566544
Q ss_pred cCCCCCc---h-hhhcc--c--CCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHH
Q psy246 518 AGKSNGL---G-PVISG--N--TCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQIL 578 (615)
Q Consensus 518 AG~~~~L---~-gvva~--~--t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il 578 (615)
.|..... + +++.+ . +.+||+.+ ......+....+++- .|+|+....++..|+-..+++.
T Consensus 319 ~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~~L~~-~Gi~ip~f~~pe~A~~al~~~~ 385 (388)
T PRK00696 319 FGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKKILAE-SGLNIIAADTLDDAAQKAVEAA 385 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHHHHH-CCCCceecCCHHHHHHHHHHHh
Confidence 4332211 1 22211 1 67899554 322233444554543 6888888889999888777653
No 95
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=76.07 E-value=7.7 Score=42.80 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=54.7
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCee---EE---EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCE
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDE---QI---LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNV 512 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~---~V---~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 512 (615)
.++.||+++.-. .+..+++...|+.-|+++. .+ -+-+...-+++.+.++. +.+.+ ......+
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~-------~~~~~-~~~dr~d- 113 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALH-------AAINR-HGIDRHS- 113 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHH-------HHHHH-cCCCCCc-
Confidence 579999876543 2567888888988887653 22 11122011234455444 22222 1222233
Q ss_pred EEEEecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 513 VFIAVAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 513 V~Ia~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
+|||+.|+ ..-+++++|+ +-..|.|.|||.
T Consensus 114 ~IIaiGGGsv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 114 YVLAIGGGAVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred eEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 88888877 4567888886 345899999996
No 96
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=76.02 E-value=43 Score=34.63 Aligned_cols=129 Identities=10% Similarity=0.095 Sum_probs=80.5
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+.|+||.-+.++- .++..+.+.+++.|... -++.... .++.- +++ +....+.++-+|++..
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l-~l~~t~~---~~~~e-~~i-----------~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQL-LLCNTGD---DEEKE-EYI-----------ELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEE-EEEEETT---THHHH-HHH-----------HHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEE-EEecCCC---chHHH-HHH-----------HHHHhcCCCEEEEecc
Confidence 4789999999886 44567777888888866 5566666 66655 666 5556667886777733
Q ss_pred CCC-CCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCCH-------------H
Q psy246 519 GKS-NGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRDF-------------F 584 (615)
Q Consensus 519 G~~-~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d~-------------~ 584 (615)
..+ .+|.-.... ..||+-+=....+ |.++|++.+|+-..+-.++-.++..... .
T Consensus 66 ~~~~~~l~~~~~~--~iPvV~~~~~~~~----------~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~ 133 (279)
T PF00532_consen 66 ENDDEELRRLIKS--GIPVVLIDRYIDN----------PEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSST 133 (279)
T ss_dssp SCTCHHHHHHHHT--TSEEEEESS-SCT----------TCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHH
T ss_pred cCChHHHHHHHHc--CCCEEEEEeccCC----------cccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecCcchHH
Confidence 333 234444443 6888877554321 3578999988555554444444443322 3
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
-.+|++.|+..+.+
T Consensus 134 ~~~R~~Gy~~Al~~ 147 (279)
T PF00532_consen 134 SRERLQGYRDALKE 147 (279)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777776554
No 97
>PLN02834 3-dehydroquinate synthase
Probab=74.21 E-value=9.5 Score=42.74 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=59.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee---EEEec---ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC--CEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE---QILSA---NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK--NVV 513 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~---~V~sa---HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~--~~V 513 (615)
.+|.||++....-...+++...|+.-|+.+. .+... +. +.+.+.+++ +.+.+.++ ..+
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~k---sl~~v~~~~-----------~~l~~~~~dr~~~ 166 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYK---DMETLMKVF-----------DKALESRLDRRCT 166 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCC---CHHHHHHHH-----------HHHHhcCCCcCcE
Confidence 4799999887666688999999999888654 23332 34 556565554 33333332 238
Q ss_pred EEEecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 514 FIAVAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 514 ~Ia~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
|||+.|+ ..-+++++|+ ....|+|.|||.
T Consensus 167 VIAiGGGsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 167 FVALGGGVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred EEEECChHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 8888876 5567778764 557899999995
No 98
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.31 E-value=33 Score=33.83 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=45.5
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|+++..+.+| ....+.+.++++++|+.+.-+.+. . .++...+.+ +.+-.++++ .||..++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~---~~~~~~~~l-----------~~~~~~~vd-gii~~~~ 64 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAG-G---DDAKQADQI-----------DQAIAQKVD-AIIIQHG 64 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCC-C---CHHHHHHHH-----------HHHHHcCCC-EEEEecC
Confidence 36777776665 334566777888888877533232 2 455444444 333334677 6666655
Q ss_pred CCCCchhhhcc--cCCCCeecc
Q psy246 520 KSNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 520 ~~~~L~gvva~--~t~~PVI~v 539 (615)
.......++.- .-..|||.+
T Consensus 65 ~~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 65 RAEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred ChhhhHHHHHHHHHcCCCEEEe
Confidence 44444444422 234677766
No 99
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=72.24 E-value=58 Score=36.49 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhh
Q psy246 450 SSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVI 528 (615)
Q Consensus 450 s~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvv 528 (615)
...|..+++++.+.+.. +.. +|..-+- ++.++..++ . .++ ++|+. -=| +.+.
T Consensus 289 ~~dD~~~~~~l~~~~~~---~~~~~vi~~~~---~~~e~~~iI-----------s-----~~d-l~ig~---RlH-a~I~ 341 (426)
T PRK10017 289 NKDDRMVALNLRQHVSD---PARYHVVMDEL---NDLEMGKIL-----------G-----ACE-LTVGT---RLH-SAII 341 (426)
T ss_pred CCchHHHHHHHHHhccc---ccceeEecCCC---ChHHHHHHH-----------h-----hCC-EEEEe---cch-HHHH
Confidence 36688888888777653 222 5655554 677776666 2 465 66653 122 5677
Q ss_pred cccCCCCeeccCCCCCchhhhhhhhcCCCC
Q psy246 529 SGNTCYPVINCPPLDSTGRDVWSSLNLPAG 558 (615)
Q Consensus 529 a~~t~~PVI~vP~~~~g~~~l~S~lqmp~G 558 (615)
|..+..|+|+++-+. -++.++..+.+|..
T Consensus 342 a~~~gvP~i~i~Y~~-K~~~~~~~lg~~~~ 370 (426)
T PRK10017 342 SMNFGTPAIAINYEH-KSAGIMQQLGLPEM 370 (426)
T ss_pred HHHcCCCEEEeeehH-HHHHHHHHcCCccE
Confidence 788999999999754 56778888888874
No 100
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=71.78 E-value=55 Score=32.01 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=59.2
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++..+.+| ..+.+.+..+++++|+... +..... .++...+.+ +.+..++++-|||.....
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~~dgiii~~~~~ 66 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQVL-VCNSDN---DPEKEKEYL-----------ESLLAYQVDGLIVNPTGN 66 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEE-EEcCCC---CHHHHHHHH-----------HHHHHcCcCEEEEeCCCC
Confidence 6777766655 5667788888999997764 333333 444444444 334445677455544333
Q ss_pred CCC-chhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc
Q psy246 521 SNG-LGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA 579 (615)
Q Consensus 521 ~~~-L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~ 579 (615)
... +.-. -....|||.+-.... +.+++++..|+-..+.++|-.++.
T Consensus 67 ~~~~l~~~--~~~~ipvV~~~~~~~-----------~~~~~~v~~d~~~~g~~~~~~l~~ 113 (267)
T cd06283 67 NKELYQRL--AKNGKPVVLVDRKIP-----------ELGVDTVTLDNYEAAKEAVDHLIE 113 (267)
T ss_pred ChHHHHHH--hcCCCCEEEEcCCCC-----------CCCCCEEEeccHHHHHHHHHHHHH
Confidence 221 1111 123568877643211 235677777766655555554444
No 101
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=71.40 E-value=80 Score=30.26 Aligned_cols=82 Identities=7% Similarity=0.024 Sum_probs=47.3
Q ss_pred EEEEeCCCC---CHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSS---DLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~S---D~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++.-..+ -..+.+.+..+++++|+... +...+. +++...+.+ +..-..+++ .+|+.+..
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~-~~~~~~---~~~~~~~~~-----------~~~~~~~~d-~ii~~~~~ 65 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVL-LANSQN---DAEKQLSAL-----------ENLIARGVD-GIIIAPSD 65 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCCeEE-EEeCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEecCC
Confidence 566664432 23455666777888998764 444444 666655555 333445777 66666555
Q ss_pred CCCchhhhcc--cCCCCeeccCCC
Q psy246 521 SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 521 ~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
...+. ++.- ....|||.+...
T Consensus 66 ~~~~~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 66 LTAPT-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred Ccchh-HHHHhhhcCCCEEEeccC
Confidence 44444 2333 456899887543
No 102
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=71.11 E-value=7.5 Score=37.77 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=45.5
Q ss_pred chHHHHHHHHhhHHHHHHHHhhh-hcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC-chhhhhhhhcCCCCce
Q psy246 483 ARDEVQIMKRLSLVVFEILVMKS-WSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS-TGRDVWSSLNLPAGIA 560 (615)
Q Consensus 483 ~p~~~~~~~~~~~~~~~~l~~~~-~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~-g~~~l~S~lqmp~Gv~ 560 (615)
+.++..+.+ +.. ...|++ |||+-.|. +-++..+++.|||.+|++.. =+.+|.-.-+..+-|+
T Consensus 18 ~~e~~v~~a-----------~~~~~~~g~d-ViIsRG~t----a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Ia 81 (176)
T PF06506_consen 18 SLEEAVEEA-----------RQLLESEGAD-VIISRGGT----AELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIA 81 (176)
T ss_dssp -HHHHHHHH-----------HHHHTTTT-S-EEEEEHHH----HHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEE
T ss_pred cHHHHHHHH-----------HHhhHhcCCe-EEEECCHH----HHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEE
Confidence 445666665 555 668898 99998665 56677788999999998653 2223322223344566
Q ss_pred eeeecChhhHHHHHHHHHcc
Q psy246 561 CSTVTAPSNAALAAAQILAQ 580 (615)
Q Consensus 561 v~tv~~~~nAa~~A~~Il~~ 580 (615)
++.-.+.....-...++|++
T Consensus 82 vv~~~~~~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 82 VVGYPNIIPGLESIEELLGV 101 (176)
T ss_dssp EEEESS-SCCHHHHHHHHT-
T ss_pred EEecccccHHHHHHHHHhCC
Confidence 66655555545556777766
No 103
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=71.10 E-value=9.3 Score=40.03 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=53.4
Q ss_pred CeEEEEeCCCCC-----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSSD-----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
-+|+|++||.|- +.-++.+.++|++.|..+.-+ -.+. .+-+.. ......+.||++
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~-~~~~----~~~~~~---------------l~~~~~d~vf~~ 63 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGV-DASG----KELVAK---------------LLELKPDKCFVA 63 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEE-cCCc----hhHHHH---------------hhccCCCEEEEe
Confidence 379999999998 466788899999999887533 2232 111111 112356779998
Q ss_pred ecCCC---CCchhhhcccCCCCeeccCCCCC
Q psy246 517 VAGKS---NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 517 ~AG~~---~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+-|.. +.+++++.. ..+|++|+.+.++
T Consensus 64 lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~ 93 (296)
T PRK14569 64 LHGEDGENGRVSALLEM-LEIKHTSSSMKSS 93 (296)
T ss_pred CCCCCCCChHHHHHHHH-cCCCeeCCCHHHH
Confidence 87654 446666543 4688888776553
No 104
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=70.93 E-value=53 Score=32.28 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=58.7
Q ss_pred EEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|++.+.++- .+.+.+...++++|+...-+....- ++++..+.+ +++-.++++ .||....-
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---d~~~q~~~i-----------~~~i~~~~d-~Iiv~~~~ 65 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQN---DPEEQIEQI-----------EQAISQGVD-GIIVSPVD 65 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTT---THHHHHHHH-----------HHHHHTTES-EEEEESSS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCC---CHHHHHHHH-----------HHHHHhcCC-EEEecCCC
Confidence 67888888884 3556788888999999874456666 777777666 566667888 77777666
Q ss_pred CCCchhhhcccC--CCCeeccC
Q psy246 521 SNGLGPVISGNT--CYPVINCP 540 (615)
Q Consensus 521 ~~~L~gvva~~t--~~PVI~vP 540 (615)
...+..++.-.. ..|||.+=
T Consensus 66 ~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 66 PDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp TTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHhhcCceEEEEe
Confidence 667777665443 57888854
No 105
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=66.85 E-value=11 Score=38.88 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=50.2
Q ss_pred eEEEEeCCCCCHHHH-----HHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 443 LVVLALGSSSDLPFA-----NKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~-----~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
+|+|++||.|+...+ ..+.++|++.|+.+..|- .+. .+.+. + +..+.+.||+.+
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~-~~~------~~~~~----------~----~~~~~D~v~~~~ 64 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID-PGE------DIAAQ----------L----KELGFDRVFNAL 64 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe-cCc------chHHH----------h----ccCCCCEEEEec
Confidence 799999999976655 899999999999987543 221 11111 1 223577666664
Q ss_pred c---CCCCCchhhhcccCCCCeeccCC
Q psy246 518 A---GKSNGLGPVISGNTCYPVINCPP 541 (615)
Q Consensus 518 A---G~~~~L~gvva~~t~~PVI~vP~ 541 (615)
- |..+++++++... .+|++|.++
T Consensus 65 ~g~~~~~~~~~~~le~~-gi~~~g~~~ 90 (304)
T PRK01372 65 HGRGGEDGTIQGLLELL-GIPYTGSGV 90 (304)
T ss_pred CCCCCCccHHHHHHHHc-CCCccCCCH
Confidence 3 4455677766544 778877653
No 106
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=66.81 E-value=1.7e+02 Score=33.41 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=70.5
Q ss_pred cccccccchhhhhHHHHHHHhh---cc----cCC---CCCeEEEEeCCCCCHHHHHHHHHHhh--ccCCCee----EEEe
Q psy246 413 NVTAEGLNQVKLNFTWIADTLA---SV----KRP---TDNLVVLALGSSSDLPFANKIDDANH--DPQWSDE----QILS 476 (615)
Q Consensus 413 ~~~~~~l~~VkenY~eVA~~L~---~~----k~~---~~~~V~Ii~gs~SD~~~~~~~~~~l~--~~gi~~~----~V~s 476 (615)
++.+.|++.+...|++.=.+|. .| ++| .+.+|||||+.++ .....+..++. ...++.. .|-+
T Consensus 97 ~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tg--AairDIl~~~~rR~P~~~viv~pt~VQG 174 (440)
T COG1570 97 SMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTG--AALRDILHTLSRRFPSVEVIVYPTLVQG 174 (440)
T ss_pred cCCcCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCch--HHHHHHHHHHHhhCCCCeEEEEeccccC
Confidence 4667899999999999877773 12 222 3568999999875 44555555553 3444443 2333
Q ss_pred cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC-CCEEEEEecCCCCCc-----------hhhhcccCCCCeeccC-CCC
Q psy246 477 ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG-KNVVFIAVAGKSNGL-----------GPVISGNTCYPVINCP-PLD 543 (615)
Q Consensus 477 aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~-~~~V~Ia~AG~~~~L-----------~gvva~~t~~PVI~vP-~~~ 543 (615)
.- .+.++.+.+ +.+..++ ++ |+|.+=|+ |.+ .=.| .....|||.-= =.+
T Consensus 175 ~~----A~~eIv~aI-----------~~an~~~~~D-vlIVaRGG-GSiEDLW~FNdE~vaRAi-~~s~iPvISAVGHEt 236 (440)
T COG1570 175 EG----AAEEIVEAI-----------ERANQRGDVD-VLIVARGG-GSIEDLWAFNDEIVARAI-AASRIPVISAVGHET 236 (440)
T ss_pred CC----cHHHHHHHH-----------HHhhccCCCC-EEEEecCc-chHHHHhccChHHHHHHH-HhCCCCeEeecccCC
Confidence 22 344444444 4455455 77 66666555 222 2223 24677887521 111
Q ss_pred C-chhhhhhhhcCCC
Q psy246 544 S-TGRDVWSSLNLPA 557 (615)
Q Consensus 544 ~-g~~~l~S~lqmp~ 557 (615)
. .+.++-+=+..|-
T Consensus 237 D~tL~DfVAD~RApT 251 (440)
T COG1570 237 DFTLADFVADLRAPT 251 (440)
T ss_pred CccHHHhhhhccCCC
Confidence 1 5667766666654
No 107
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=66.22 E-value=1.9e+02 Score=30.92 Aligned_cols=132 Identities=11% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 440 TDNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
..+.|++++-+.++ .++++.+...+.+.|... -++..+. ++++..+++ +....++++-+||+
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~-~l~~~~~---~~~~e~~~~-----------~~l~~~~vdGiIi~ 121 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSL-LLANTDD---DPEKEREYL-----------ETLLQKRVDGLILL 121 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEE-EEECCCC---CHHHHHHHH-----------HHHHHcCCCEEEEe
Confidence 35689999887776 445667777778888766 5666665 788877777 55566678866666
Q ss_pred ecCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------CHH
Q psy246 517 VAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------DFF 584 (615)
Q Consensus 517 ~AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d~~ 584 (615)
.......+.-.+... ..|++-+=.... .++++++..|+-.++-.++-.++.+. ...
T Consensus 122 ~~~~~~~~~~~l~~~-~~P~V~i~~~~~-----------~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~ 189 (333)
T COG1609 122 GERPNDSLLELLAAA-GIPVVVIDRSPP-----------GLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSA 189 (333)
T ss_pred cCCCCHHHHHHHHhc-CCCEEEEeCCCc-----------cCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCcccc
Confidence 644444444455444 677766543321 35677888887666655555555542 234
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
-..|+..|+..+..
T Consensus 190 ~~~R~~Gf~~al~~ 203 (333)
T COG1609 190 SRERLEGYRAALRE 203 (333)
T ss_pred HhHHHHHHHHHHHH
Confidence 57778888766543
No 108
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=66.16 E-value=27 Score=30.89 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
.+.|+|.|-|++| =|++.++...|++.|++++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~ 45 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFA 45 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEE
Confidence 4579999987754 4788899999999999997
No 109
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=65.65 E-value=91 Score=34.08 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=67.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee---EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE---QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~---~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
++.|+|++.|. -.+--+.+++..+|.... -+.+. - +++.+.+.+ +...+..+++.|+|.+
T Consensus 256 ~G~i~~i~nG~---Gl~~~t~D~~~~~g~~~aNplDlgg~-a---~~~~~~~al----------~~l~~dp~vd~ilv~i 318 (386)
T TIGR01016 256 DGNIGCMVNGA---GLAMATMDIIKLYGGEPANFLDVGGG-A---SAERVREAL----------KLVLSDKSVKVVFINI 318 (386)
T ss_pred CCcEEEEECCc---cHHHHHHHHHHHcCCCCCCcEEecCC-C---CHHHHHHHH----------HHHHcCCCCCEEEEEC
Confidence 68899998774 355567788888888775 44333 3 566665544 2333445677566544
Q ss_pred cCCCCCch----hhhcc--cCC--CCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHH
Q psy246 518 AGKSNGLG----PVISG--NTC--YPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQI 577 (615)
Q Consensus 518 AG~~~~L~----gvva~--~t~--~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~I 577 (615)
.|...... +++.+ .+. +||+.+-. ....+....+++ .+|+++....++..|+..|+++
T Consensus 319 ~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~-g~~~~~~~~~L~-~~G~~ip~~~~~~~Av~~~~~~ 384 (386)
T TIGR01016 319 FGGITRCDLVAKGLVEALKEVGVNVPVVVRLE-GTNVEEGKKILA-ESGLNIIFATSMEEAAEKAVEA 384 (386)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeC-CccHHHHHHHHH-HcCCCccccCCHHHHHHHHHHh
Confidence 44322221 22222 123 78855442 212333444444 3575555677888888887764
No 110
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=64.43 E-value=17 Score=39.39 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=31.2
Q ss_pred CCCCEEEEEecCCCCCchhhhcccC----CCCeeccCCCCC
Q psy246 508 SGKNVVFIAVAGKSNGLGPVISGNT----CYPVINCPPLDS 544 (615)
Q Consensus 508 ~~~~~V~Ia~AG~~~~L~gvva~~t----~~PVI~vP~~~~ 544 (615)
...+ -+|++.|..+..+|+++|.. ..||||||++.+
T Consensus 179 ~~fD-~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~ 218 (323)
T COG2515 179 LKFD-SVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSAD 218 (323)
T ss_pred cCCC-EEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCC
Confidence 3566 78888899999999999987 899999999885
No 111
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=63.69 E-value=23 Score=30.61 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=26.5
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~ 472 (615)
.+.|+|+|-|++|. |.+.++...|++.|++|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~ 41 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFG 41 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeE
Confidence 35699998877655 577899999999999998
No 112
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=63.60 E-value=23 Score=39.11 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=90.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEec---ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSA---NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~sa---HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|+|++-.+=.--+.++....|+..|+..+ .++.. ++ +.+.+. .+++.|-+.--.| +..+||+.
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~K---sl~~~~-------~i~~~ll~~~~~R--~s~iialG 102 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYK---SLETLE-------KIYDALLEAGLDR--KSTLIALG 102 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccc---cHHHHH-------HHHHHHHHcCCCC--CcEEEEEC
Confidence 789998887777789999999999999987 44432 33 333332 3344443332223 34888888
Q ss_pred CC-CCCchhhhcc--cCCCCeeccCCCC------C-----ch-----hhhhhhhcCCCCceeeee------cChhhHHHH
Q psy246 519 GK-SNGLGPVISG--NTCYPVINCPPLD------S-----TG-----RDVWSSLNLPAGIACSTV------TAPSNAALA 573 (615)
Q Consensus 519 G~-~~~L~gvva~--~t~~PVI~vP~~~------~-----g~-----~~l~S~lqmp~Gv~v~tv------~~~~nAa~~ 573 (615)
|+ -+-|+|++|| +--.|.|.||+.- | |+ -.|....-.|..|=+-+- ..-..++++
T Consensus 103 GGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G~A 182 (360)
T COG0337 103 GGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAGMA 182 (360)
T ss_pred ChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEEEEchHHhccCCHHHHHHhHH
Confidence 77 5679999998 5689999999853 1 22 223333344554433221 144555554
Q ss_pred -HHHHHccCCHHHHHHHHHHHHHH
Q psy246 574 -AAQILAQRDFFIWSKLRMYQTKL 596 (615)
Q Consensus 574 -A~~Il~~~d~~l~~kl~~~~~~~ 596 (615)
+...-.+.|+.+++.|.....+.
T Consensus 183 EvIK~g~I~D~~~f~~Le~~~~~l 206 (360)
T COG0337 183 EVIKYGLIADPEFFDWLEENLDAL 206 (360)
T ss_pred HHHHHhhhcCHHHHHHHHHHHHHH
Confidence 24555667999999998874443
No 113
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=63.19 E-value=1.2e+02 Score=29.89 Aligned_cols=83 Identities=4% Similarity=-0.011 Sum_probs=46.3
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++..+.++ ..+.+.+..+++++|+... +..... .+++..+.+ +....++++-|||.....
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vdgiii~~~~~ 66 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGYNLI-LCNTEG---DPERQRSYL-----------RMLAQKRVDGLLVMCSEY 66 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCEEE-EEeCCC---ChHHHHHHH-----------HHHHHcCCCEEEEecCCC
Confidence 6777765443 3345667778888997664 444455 666666555 444556777455544333
Q ss_pred CCCchhhhcccCCCCeeccCC
Q psy246 521 SNGLGPVISGNTCYPVINCPP 541 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~ 541 (615)
....-..+......||+-+-.
T Consensus 67 ~~~~~~~l~~~~~ipvV~i~~ 87 (269)
T cd06275 67 DQPLLAMLERYRHIPMVVMDW 87 (269)
T ss_pred ChHHHHHHHhcCCCCEEEEec
Confidence 322212232234678876643
No 114
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=63.00 E-value=2e+02 Score=30.39 Aligned_cols=25 Identities=0% Similarity=-0.081 Sum_probs=16.1
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHhhc
Q psy246 440 TDNLVVLALGSSSDLPFANKIDDANHD 466 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD~~~~~~~~~~l~~ 466 (615)
.+.+||||++.++- ....+..+++.
T Consensus 13 ~p~~I~vITs~~gA--a~~D~~~~~~~ 37 (319)
T PF02601_consen 13 FPKRIAVITSPTGA--AIQDFLRTLKR 37 (319)
T ss_pred CCCEEEEEeCCchH--HHHHHHHHHHH
Confidence 35689999987653 34555555544
No 115
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=62.82 E-value=20 Score=37.15 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=56.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee---------EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEE
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE---------QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVV 513 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~---------~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V 513 (615)
+++|++--.-=.+.. .+.++.+|+.-. .|...|. .|++.+..+ +.++. +..++.|++.|
T Consensus 111 rfsViTtt~rs~~il---~~lv~~~g~s~~~~~vrstdl~vL~l~~---~~~~~~~~l-----~~~~~-~a~~edgAeaI 178 (230)
T COG4126 111 RFSVITTTERSRPIL---EELVRSYGLSRHCRSVRSTDLPVLALEG---PPEEAEALL-----VIEAA-EALKEDGAEAI 178 (230)
T ss_pred eEEEEecCcccHHHH---HHHHHhcCccccccceeeCCCCcccccC---ChHHHHHHH-----HHHHH-HHhhhcCCCEE
Confidence 688887654444443 455678888765 2455566 677776554 44444 44455688889
Q ss_pred EEEecCCCCCchhhhcccCCCCeec
Q psy246 514 FIAVAGKSNGLGPVISGNTCYPVIN 538 (615)
Q Consensus 514 ~Ia~AG~~~~L~gvva~~t~~PVI~ 538 (615)
++.+|||+ +|.-.+.-.+..|||.
T Consensus 179 iLGCAGms-~la~~Lq~~~gvPVID 202 (230)
T COG4126 179 ILGCAGMS-DLADQLQKAFGVPVID 202 (230)
T ss_pred EEcCccHH-HHHHHHHHHhCCCccc
Confidence 99999995 5688888888888885
No 116
>PRK09526 lacI lac repressor; Reviewed
Probab=62.33 E-value=1.4e+02 Score=30.83 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+.|++++.+.++ ..+.+.+...+.+.|+...-..+.+. .+++..+++ +....++++-+||..
T Consensus 63 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~~~---~~~~~~~~l-----------~~l~~~~vdGiii~~ 128 (342)
T PRK09526 63 SLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVERS---GVEACQAAV-----------NELLAQRVSGVIINV 128 (342)
T ss_pred CceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCCCC---hHHHHHHHH-----------HHHHhcCCCEEEEec
Confidence 4579999987554 24567777888889977652222222 234333443 334445777455532
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------CHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------DFFI 585 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d~~l 585 (615)
.-.+..+..+..-....||+-+-... +..++.+..|+..++.+++-.++... ...-
T Consensus 129 ~~~~~~~~~~~~~~~~iPvV~~d~~~------------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~l~g~~~~~~~ 196 (342)
T PRK09526 129 PLEDADAEKIVADCADVPCLFLDVSP------------QSPVNSVSFDPEDGTRLGVEHLVELGHQRIALLAGPESSVSA 196 (342)
T ss_pred CCCcchHHHHHhhcCCCCEEEEeccC------------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCccccH
Confidence 21222222233222356777553211 12356666676555444443333321 1123
Q ss_pred HHHHHHHHHHHH
Q psy246 586 WSKLRMYQTKLY 597 (615)
Q Consensus 586 ~~kl~~~~~~~~ 597 (615)
..|...|+..+.
T Consensus 197 ~~R~~Gf~~al~ 208 (342)
T PRK09526 197 RLRLAGWLEYLT 208 (342)
T ss_pred HHHHHHHHHHHH
Confidence 566677776554
No 117
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.02 E-value=1.7e+02 Score=28.88 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=63.6
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++..+.+| ..+.+.+...+++.|+... +...+. .++...+++ +....++++-+||..+
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~~dgiii~~~-- 64 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGLRVI-LCNTDE---DPEKEAMYL-----------ELMEEERVTGVIFAPT-- 64 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHHHHHHHH-----------HHHHhCCCCEEEEeCC--
Confidence 6666655544 3455677788889997764 444455 666555555 4444556774444332
Q ss_pred CCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCC-----------HHHHHHH
Q psy246 521 SNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRD-----------FFIWSKL 589 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d-----------~~l~~kl 589 (615)
....+-.-......|||.+=.... +...+++..|+-..+..+|-.++.... .....|+
T Consensus 65 ~~~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~v~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~~R~ 133 (263)
T cd06280 65 RATLRRLAELRLSFPVVLIDRAGP-----------AGRVDAVVLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTGAERR 133 (263)
T ss_pred CCCchHHHHHhcCCCEEEECCCCC-----------CCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCHHHHH
Confidence 222221111123568877643221 123455555555444444444433321 1224666
Q ss_pred HHHHHHHH
Q psy246 590 RMYQTKLY 597 (615)
Q Consensus 590 ~~~~~~~~ 597 (615)
..|+..+.
T Consensus 134 ~gf~~~~~ 141 (263)
T cd06280 134 AGYEDAMR 141 (263)
T ss_pred HHHHHHHH
Confidence 66666553
No 118
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=61.90 E-value=12 Score=38.85 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred eEEEEeCCCCC-----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 443 LVVLALGSSSD-----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 443 ~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
+|+|++|+.|= +..++.+.++|++.|..+..+- .++ +-+..+ . +....+.||+.+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~-~~~-----~~~~~~------------~--~~~~~D~v~~~~ 61 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFD-VDE-----DFLKKV------------D--QLKSFDVVFNVL 61 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEc-cCc-----hHHHHh------------h--hccCCCEEEEeC
Confidence 69999999884 4567889999999999987543 333 111111 1 112367788887
Q ss_pred cCC---CCCchhhhcccCCCCeeccCCCC
Q psy246 518 AGK---SNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 518 AG~---~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
-|. .+++++++.. ..+|++|.++.+
T Consensus 62 ~g~~ge~~~~~~~le~-~gip~~G~~~~a 89 (299)
T PRK14571 62 HGTFGEDGTLQAILDF-LGIRYTGSDAFS 89 (299)
T ss_pred CCCCCCccHHHHHHHH-cCCCccCCCHHH
Confidence 665 6777777764 568888876654
No 119
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.07 E-value=28 Score=38.39 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=54.2
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCee---EE--Eec---ccCCcc-hHHHHHHHHhhHHHHHHHHhhhhcCC
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDE---QI--LSA---NLDNVA-RDEVQIMKRLSLVVFEILVMKSWSSG 509 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~---~V--~sa---HR~~~~-p~~~~~~~~~~~~~~~~l~~~~~~~~ 509 (615)
.++.||+.+.-.- +..+.....|+.-|++++ .+ ... ++ + ++.+.++. +.+.+.+
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k---~~~~~v~~i~-----------~~l~~~~ 96 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACK---NDPDLVEALH-----------AAINRHG 96 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCC---ChHHHHHHHH-----------HHHHHcC
Confidence 4788998876553 456888888887786543 11 111 22 3 23344343 3333333
Q ss_pred CC--EEEEEecCCC-CCchhhhcc--cCCCCeeccCCC
Q psy246 510 KN--VVFIAVAGKS-NGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 510 ~~--~V~Ia~AG~~-~~L~gvva~--~t~~PVI~vP~~ 542 (615)
++ .++||+.|++ .-+++++|+ +-..|.|.|||.
T Consensus 97 ~~r~~~IIalGGG~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 97 IDRHSYVIAIGGGAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred CCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 32 3888888874 568888886 457899999987
No 120
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=57.67 E-value=74 Score=31.53 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=41.7
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|+++.-+.++ ..+++.+...+++.|+... ..+...+ +++.-.+.+ +....++++ .+|...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~~ 65 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEG---DQQGQLSIA-----------ENMINKGYK-GLLFSP 65 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCC---CHHHHHHHH-----------HHHHHhCCC-EEEECC
Confidence 36677765554 2334566677788887664 2222234 444444443 333345676 544443
Q ss_pred CCCCCchhhhcc--cCCCCeeccC
Q psy246 519 GKSNGLGPVISG--NTCYPVINCP 540 (615)
Q Consensus 519 G~~~~L~gvva~--~t~~PVI~vP 540 (615)
..+..+...+.. .-..|||.+-
T Consensus 66 ~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 66 ISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred CChHHhHHHHHHHHHCCCeEEEEC
Confidence 333333333332 2356887664
No 121
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=57.59 E-value=47 Score=34.55 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=45.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
..+|++|..-|..........+ +.+.++ .+.-... ++.......++...+++.+.+ ...+ |+++.....
T Consensus 30 ~~~~~tg~h~~~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~----~~pD-vV~~~g~~~ 99 (363)
T cd03786 30 LVLVVTGQHYDMEMGVTFFEIL--FIIKPDYDLLLGSD---SQSLGAQTAGLLIGLEAVLLE----EKPD-LVLVLGDTN 99 (363)
T ss_pred EEEEEeCCCCChhhhHHHHHhh--CCCCCCEEEecCCC---CCCHHHHHHHHHHHHHHHHHH----hCCC-EEEEeCCch
Confidence 4556666666666555555554 333332 2211122 333333333333444444433 3466 777775455
Q ss_pred CCchhhhcc-cCCCCeeccC
Q psy246 522 NGLGPVISG-NTCYPVINCP 540 (615)
Q Consensus 522 ~~L~gvva~-~t~~PVI~vP 540 (615)
..+++.+++ ....||+.+.
T Consensus 100 ~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 100 ETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 667665555 5688999864
No 122
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=56.97 E-value=1.4e+02 Score=29.57 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=58.4
Q ss_pred EEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|++.+.+|. .+.+.+...++++|+... +..... .++.-.+.+ +..-.++++ .+|..++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vd-gii~~~~~ 65 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYSLL-LASTNN---DPERERKCL-----------ENMLSQGID-GLIIEPTK 65 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCEEE-EEeCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeccc
Confidence 67777665543 566788888999998875 333344 555444444 334446787 55555443
Q ss_pred CCCch---hhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc
Q psy246 521 SNGLG---PVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA 579 (615)
Q Consensus 521 ~~~L~---gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~ 579 (615)
+.... ..+. -....|||.+=.... +++++.+..|+-..+.+++-.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~ipvV~~~~~~~-----------~~~~~~V~~D~~~~g~~~~~~l~~ 118 (273)
T cd01541 66 SALPNPNIDLYLKLEKLGIPYVFINASYE-----------ELNFPSLVLDDEKGGYKATEYLIE 118 (273)
T ss_pred cccccccHHHHHHHHHCCCCEEEEecCCC-----------CCCCCEEEECcHHHHHHHHHHHHH
Confidence 32211 2222 234578887632211 124556666655554444444443
No 123
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=56.39 E-value=22 Score=32.01 Aligned_cols=63 Identities=14% Similarity=0.038 Sum_probs=42.5
Q ss_pred EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCCchhhhhhh
Q psy246 473 QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSS 552 (615)
Q Consensus 473 ~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~ 552 (615)
-+.|-.. ...++.+.+ +.+.++|++ +|++.+.+ .|+.+.... ..|+|-||....|--++|+|
T Consensus 48 I~iS~SG---~t~e~i~~~-----------~~a~~~g~~--iI~IT~~~-~l~~~~~~~-~~~~~~~p~~~~~r~s~~~~ 109 (119)
T cd05017 48 IAVSYSG---NTEETLSAV-----------EQAKERGAK--IVAITSGG-KLLEMAREH-GVPVIIIPKGLQPRAAFPYL 109 (119)
T ss_pred EEEECCC---CCHHHHHHH-----------HHHHHCCCE--EEEEeCCc-hHHHHHHHc-CCcEEECCCCCCCceeHHHH
Confidence 4666666 666777666 667778887 44444433 477765444 78999999777676777766
Q ss_pred h
Q psy246 553 L 553 (615)
Q Consensus 553 l 553 (615)
+
T Consensus 110 ~ 110 (119)
T cd05017 110 F 110 (119)
T ss_pred H
Confidence 4
No 124
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=56.03 E-value=1.7e+02 Score=28.68 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=55.9
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++..+.+| ..+.+.+...+++.|.... +...+. .++...+++ +.....+++-||| .+..
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vdgiii-~~~~ 65 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKYNII-LSNSDN---DKEKELKVL-----------NNLLAKQVDGIIF-MGGK 65 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCCeEE-EEeCCC---CHHHHHHHH-----------HHHHHhcCCEEEE-eCCC
Confidence 6677765444 3445677777888887664 445566 677666665 3333456773444 3322
Q ss_pred -CCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHH
Q psy246 521 -SNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQIL 578 (615)
Q Consensus 521 -~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il 578 (615)
+...-..+ .....|||.+-.... ...++.+..|+...+..++-.++
T Consensus 66 ~~~~~~~~l-~~~~ipvV~~~~~~~-----------~~~~~~v~~d~~~~~~~~~~~l~ 112 (268)
T cd06298 66 ISEEHREEF-KRSPTPVVLAGSVDE-----------DNELPSVNIDYKKAAFEATELLI 112 (268)
T ss_pred CcHHHHHHH-hcCCCCEEEEccccC-----------CCCCCEEEECcHHHHHHHHHHHH
Confidence 21111112 133678877632210 12355666666665554444443
No 125
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=55.84 E-value=44 Score=38.67 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=79.1
Q ss_pred EEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCch
Q psy246 446 LALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLG 525 (615)
Q Consensus 446 Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~ 525 (615)
|.+=|.|- ..+-+.++..+++-..+ |.-... ..++..+++ .+..+..+++ |||+-.|. +
T Consensus 17 ~~~~~~~~--l~~~~~~i~~~~~~~~~-~~~~~~---~~~~~v~~~----------~~~~~~~~~d-viIsrG~t----a 75 (538)
T PRK15424 17 IWTVSVSR--LFELFRDISLEFDHLAN-ITPIQL---GFEKAVTYI----------RKRLATERCD-AIIAAGSN----G 75 (538)
T ss_pred EEEeeHHH--HHHHHHHHHHhcCCCce-EEehhh---hHHHHHHHH----------HHHHhhCCCc-EEEECchH----H
Confidence 33334444 66778888888887654 322333 445554444 2335556787 99987665 4
Q ss_pred hhhcccCCCCeeccCCCCC-chhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC--------CHHHHHHHHHHHH
Q psy246 526 PVISGNTCYPVINCPPLDS-TGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR--------DFFIWSKLRMYQT 594 (615)
Q Consensus 526 gvva~~t~~PVI~vP~~~~-g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~--------d~~l~~kl~~~~~ 594 (615)
.++-.++++|||-++++.- =+.+|.-.-+.++-+++++-.+....+-.-.++|++. ..+++..++..+.
T Consensus 76 ~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 76 AYLKSRLSVPVILIKPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred HHHHhhCCCCEEEecCCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 4566788999999998653 2223222224466678888777777777777888763 2456666655544
No 126
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=55.52 E-value=34 Score=35.44 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=50.4
Q ss_pred eEEEEe----CCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLAL----GSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~----gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+++||. |+.......+++...|++.|+++.-...-++ . +..+++ +.....+.+ + |.++
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~---~--~~~~~~-----------~~~~~~~~d-~-ivv~ 64 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEK---G--DAARYV-----------EEARKFGVD-T-VIAG 64 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCc---c--cHHHHH-----------HHHHhcCCC-E-EEEE
Confidence 455654 4444456778899999999998863333332 1 122223 222233566 4 4457
Q ss_pred CCCCCchhhhcccC---CCCeec-cCCCC
Q psy246 519 GKSNGLGPVISGNT---CYPVIN-CPPLD 543 (615)
Q Consensus 519 G~~~~L~gvva~~t---~~PVI~-vP~~~ 543 (615)
|+.+.+-.|+.+.- ..|.|| +|.-+
T Consensus 65 GGDGTl~~v~~~l~~~~~~~~lgiiP~Gt 93 (293)
T TIGR00147 65 GGDGTINEVVNALIQLDDIPALGILPLGT 93 (293)
T ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCcC
Confidence 88899998887743 457788 77654
No 127
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=55.49 E-value=36 Score=34.59 Aligned_cols=68 Identities=9% Similarity=0.008 Sum_probs=51.6
Q ss_pred HhhccCCCeeEEE-ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCC
Q psy246 463 ANHDPQWSDEQIL-SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPP 541 (615)
Q Consensus 463 ~l~~~gi~~~~V~-saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~ 541 (615)
.+++||+....+. ..|-...+|.++.++. +.+++.+++ +|++=.+.+..+.-.+|-.+..||+-+.+
T Consensus 163 ~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~-----------~~ik~~~v~-~i~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 163 FAKRYGLKVIGVIEISPGEEPSPKDLAELI-----------KLIKENKVK-CIFTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp HHHHTT-EEEEEESSSSSSSS-HHHHHHHH-----------HHHHHTT-S-EEEEETTS-THHHHHHHHCCT-EEEESST
T ss_pred HHHhcCCceeeeeccccccCCCHHHHHHHH-----------HHhhhcCCc-EEEecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 4478999987555 2334578999999988 888888998 88888999999999999999999988887
Q ss_pred C
Q psy246 542 L 542 (615)
Q Consensus 542 ~ 542 (615)
.
T Consensus 231 l 231 (256)
T PF01297_consen 231 L 231 (256)
T ss_dssp T
T ss_pred C
Confidence 7
No 128
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=54.85 E-value=2.5e+02 Score=28.69 Aligned_cols=84 Identities=4% Similarity=0.052 Sum_probs=46.6
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++ ..+.+.+...+.+.|+.. .+..... .+++..+++ +....++++-||+..
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdGiI~~~ 120 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFERGYSL-VLCNTEG---DEQRMNRNL-----------ETLMQKRVDGLLLLC 120 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEE-EEEeCCC---CHHHHHHHH-----------HHHHHcCCCEEEEeC
Confidence 4579999876543 345667778888888665 3444444 565555554 444456777455443
Q ss_pred cCCCCCchhhhcccCCCCeecc
Q psy246 518 AGKSNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~v 539 (615)
...+......+......||+.+
T Consensus 121 ~~~~~~~~~~l~~~~~iPvV~i 142 (327)
T PRK10423 121 TETHQPSREIMQRYPSVPTVMM 142 (327)
T ss_pred CCcchhhHHHHHhcCCCCEEEE
Confidence 2222222223332235687765
No 129
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=53.64 E-value=47 Score=33.74 Aligned_cols=70 Identities=14% Similarity=-0.007 Sum_probs=50.1
Q ss_pred cccccccccccccccccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc
Q psy246 403 KDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL 479 (615)
Q Consensus 403 ~DKq~~R~~~~~~~~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR 479 (615)
+|.+.||. +|..+++.+.+|..++++.- .+-.-++.+|-|-..+.+..+++++.+..+++..-++...|.
T Consensus 100 ~d~~~~~~---~tG~~~~~il~nl~~l~~~g----~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpyh~ 169 (213)
T PRK10076 100 MDATQARD---VVKMNLPRVLENLRLLVSEG----VNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPFHQ 169 (213)
T ss_pred CCHHHHHH---HHCCCHHHHHHHHHHHHhCC----CcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecCCc
Confidence 35566665 45566788889988876531 112337888999888889999999999988865227787776
No 130
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.02 E-value=39 Score=35.40 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=52.3
Q ss_pred CeEEEEe----CCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLAL----GSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~----gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.+|. |+.......+++...|++.|+.+..+.+- .+.+..+++ +++...+.+ + |.+
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~-----~~~~~~~~a-----------~~~~~~~~d-~-vvv 70 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT-----DAHDARHLV-----------AAALAKGTD-A-LVV 70 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC-----CHHHHHHHH-----------HHHHhcCCC-E-EEE
Confidence 3566654 44455677888899999999887533221 345666666 555556677 4 447
Q ss_pred cCCCCCchhhhcccC--CCCeeccCC
Q psy246 518 AGKSNGLGPVISGNT--CYPVINCPP 541 (615)
Q Consensus 518 AG~~~~L~gvva~~t--~~PVI~vP~ 541 (615)
+|+.+.+.-|+.++. ..|+--+|.
T Consensus 71 ~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 71 VGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred ECCchHHHHHhHHhccCCCcEEEEeC
Confidence 788899888887754 344444443
No 131
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=52.91 E-value=1.1e+02 Score=30.32 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=38.0
Q ss_pred eEEEEeCCCCCH---HHHHHHHHHhhcc---CCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 443 LVVLALGSSSDL---PFANKIDDANHDP---QWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 443 ~V~Ii~gs~SD~---~~~~~~~~~l~~~---gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
+|+++....++. ...+.+..+++++ |...+ .+....- .++...+.+ +.+..++++ .||
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~---~~~~~~~~~-----------~~~~~~~vd-giI 65 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADG---DVAQQIADI-----------RNLIAQGVD-AII 65 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC---CHHHHHHHH-----------HHHHHcCCC-EEE
Confidence 355665544441 2344555666666 76544 4443332 444444444 333334566 444
Q ss_pred EecCCCCCchhhhc--ccCCCCeeccC
Q psy246 516 AVAGKSNGLGPVIS--GNTCYPVINCP 540 (615)
Q Consensus 516 a~AG~~~~L~gvva--~~t~~PVI~vP 540 (615)
..+.....+..++. ..-..|||.+-
T Consensus 66 i~~~~~~~~~~~l~~~~~~~iPvv~~~ 92 (272)
T cd06300 66 INPASPTALNPVIEEACEAGIPVVSFD 92 (272)
T ss_pred EeCCChhhhHHHHHHHHHCCCeEEEEe
Confidence 44433232333321 23355777653
No 132
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=52.85 E-value=87 Score=25.53 Aligned_cols=28 Identities=4% Similarity=-0.200 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~ 472 (615)
+|.|.+.+.. |.+.+|...|++.|++++
T Consensus 2 ~v~ly~~~~C--~~C~ka~~~L~~~gi~~~ 29 (73)
T cd03027 2 RVTIYSRLGC--EDCTAVRLFLREKGLPYV 29 (73)
T ss_pred EEEEEecCCC--hhHHHHHHHHHHCCCceE
Confidence 4556655444 899999999999999998
No 133
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=52.32 E-value=36 Score=35.97 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=48.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee---EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE---QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~---~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
....|+||..- +-...+++.||++++ .+.+ |- ......+.++...+-+++ .....+ ++++..
T Consensus 30 ~~~~~~tg~h~-----~~~~~~~~~~~i~~~~~~~~~~-~~----~~~~~~~~~~~~~l~~~l----~~~~pD-iv~~~g 94 (365)
T TIGR00236 30 DSYVIVTAQHR-----EMLDQVLDLFHLPPDYDLNIMS-PG----QTLGEITSNMLEGLEELL----LEEKPD-IVLVQG 94 (365)
T ss_pred CEEEEEeCCCH-----HHHHHHHHhcCCCCCeeeecCC-CC----CCHHHHHHHHHHHHHHHH----HHcCCC-EEEEeC
Confidence 46788899863 556667777999865 2333 42 111222332233333444 334456 777776
Q ss_pred CCCCCchhhhcc-cCCCCeecc
Q psy246 519 GKSNGLGPVISG-NTCYPVINC 539 (615)
Q Consensus 519 G~~~~L~gvva~-~t~~PVI~v 539 (615)
-...+|++.+|+ ....||+.+
T Consensus 95 d~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 95 DTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred CchHHHHHHHHHHHhCCCEEEE
Confidence 567778766665 568899854
No 134
>PRK13055 putative lipid kinase; Reviewed
Probab=51.15 E-value=37 Score=36.33 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh
Q psy246 449 GSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV 527 (615)
Q Consensus 449 gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv 527 (615)
|+.+.....+++...|++.|+.++ ....-+ +.+..+++ +.+...+.+ ++| ++|+.+.+--|
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~-----~~~a~~~~-----------~~~~~~~~d-~vv-v~GGDGTl~ev 75 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE-----PNSAKNEA-----------KRAAEAGFD-LII-AAGGDGTINEV 75 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC-----CccHHHHH-----------HHHhhcCCC-EEE-EECCCCHHHHH
Confidence 555556667888999999999886 333222 22334444 444445676 555 66888999988
Q ss_pred hcccCC---CCeec-cCC
Q psy246 528 ISGNTC---YPVIN-CPP 541 (615)
Q Consensus 528 va~~t~---~PVI~-vP~ 541 (615)
+.|+.. .|.+| +|.
T Consensus 76 vngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 76 VNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHhhcCCCCcEEEECC
Confidence 888642 35566 443
No 135
>PRK10481 hypothetical protein; Provisional
Probab=50.69 E-value=60 Score=33.59 Aligned_cols=82 Identities=11% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
..+++|++=...- .++...-...+|.+.. ..+|..- .+++.+.+.+ +.....|++.+|+.++|
T Consensus 129 g~riGVitP~~~q---i~~~~~kw~~~G~~v~~~~aspy~--~~~~~l~~aa-----------~~L~~~gaD~Ivl~C~G 192 (224)
T PRK10481 129 GHQVGVIVPVEEQ---LAQQAQKWQVLQKPPVFALASPYH--GSEEELIDAG-----------KELLDQGADVIVLDCLG 192 (224)
T ss_pred CCeEEEEEeCHHH---HHHHHHHHHhcCCceeEeecCCCC--CCHHHHHHHH-----------HHhhcCCCCEEEEeCCC
Confidence 3589999865433 3333344444588876 5555432 2566776666 55556789999999999
Q ss_pred CCCCchhhhcccCCCCeec
Q psy246 520 KSNGLGPVISGNTCYPVIN 538 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~ 538 (615)
++......+.-.+.+|||.
T Consensus 193 ~~~~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 193 YHQRHRDLLQKALDVPVLL 211 (224)
T ss_pred cCHHHHHHHHHHHCcCEEc
Confidence 9977799999999999985
No 136
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=50.16 E-value=39 Score=35.08 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=52.6
Q ss_pred eEEEEeCCCCC--HHHHHHHHHHhhccCCCe---e-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 443 LVVLALGSSSD--LPFANKIDDANHDPQWSD---E-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 443 ~V~Ii~gs~SD--~~~~~~~~~~l~~~gi~~---~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
+|+|+--...| -...+...+.|++.|+.. + .+..+++ .++.+.+++ +.+.....+ +||+
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~---d~~~~~~~~-----------~~l~~~~~D-lIi~ 65 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEG---DPEKLRQIA-----------RKLKAQKPD-LIIA 65 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT----HHHHHHHH-----------HHHCCTS-S-EEEE
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCC---CHHHHHHHH-----------HHHhcCCCC-EEEE
Confidence 46666665555 566788889999999987 4 6889999 899888887 666666777 8888
Q ss_pred ecCCCCCchhhhcccCC-CCeeccCCC
Q psy246 517 VAGKSNGLGPVISGNTC-YPVINCPPL 542 (615)
Q Consensus 517 ~AG~~~~L~gvva~~t~-~PVI~vP~~ 542 (615)
+...++ .. +...... .||+-|-+.
T Consensus 66 ~gt~aa-~~-~~~~~~~~iPVVf~~V~ 90 (294)
T PF04392_consen 66 IGTPAA-QA-LAKHLKDDIPVVFCGVS 90 (294)
T ss_dssp ESHHHH-HH-HHHH-SS-S-EEEECES
T ss_pred eCcHHH-HH-HHHhcCCCcEEEEEecc
Confidence 855542 22 3333444 899988773
No 137
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=49.35 E-value=2.3e+02 Score=27.76 Aligned_cols=78 Identities=6% Similarity=0.036 Sum_probs=43.0
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|++.+.+| ..+.+.+...++++|+... +.+... .+++..+++ +....++++ .+|.++..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giii~~~~ 65 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGYTLL-VASSGY---DLDREYAQA-----------RKLLERGVD-GLALIGLD 65 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCCEEE-EecCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeCCC
Confidence 6777765555 3445677888888886654 444445 566555554 334445676 44444322
Q ss_pred CCCchhhhc--ccCCCCeecc
Q psy246 521 SNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvva--~~t~~PVI~v 539 (615)
. .+.++. -....||+.+
T Consensus 66 ~--~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 66 H--SPALLDLLARRGVPYVAT 84 (268)
T ss_pred C--CHHHHHHHHhCCCCEEEE
Confidence 1 222222 2345788775
No 138
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.22 E-value=1.6e+02 Score=29.09 Aligned_cols=79 Identities=8% Similarity=-0.012 Sum_probs=43.0
Q ss_pred EEEEeCCC---CCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSS---SDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~---SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|+..+. ....+.+.+...++++|+... +..... .++...+.+ +.....+++ -+|...+.
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vd-gii~~~~~ 65 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYSLL-IANSLN---DPERELEIL-----------RSFEQRRMD-GIIIAPGD 65 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCEEE-EEeCCC---ChHHHHHHH-----------HHHHHcCCC-EEEEecCC
Confidence 56666443 345566777888889998764 333344 565555554 444445677 44444443
Q ss_pred CCCchhhhc--ccCCCCeecc
Q psy246 521 SNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvva--~~t~~PVI~v 539 (615)
... +..+. .....|||-+
T Consensus 66 ~~~-~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 66 ERD-PELVDALASLDLPIVLL 85 (269)
T ss_pred CCc-HHHHHHHHhCCCCEEEE
Confidence 221 22322 1235677665
No 139
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=49.17 E-value=3e+02 Score=28.18 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=66.5
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++. .+.+.+...+++.|... .+...+. .++...+++ +....++++-+||..
T Consensus 59 ~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~-~i~~~~~---~~~~~~~~~-----------~~l~~~~vdGiIi~~ 123 (329)
T TIGR01481 59 TTTVGVIIPDISNIYYAELARGIEDIATMYKYNI-ILSNSDE---DPEKEVQVL-----------NTLLSKQVDGIIFMG 123 (329)
T ss_pred CCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEE-EEEeCCC---CHHHHHHHH-----------HHHHhCCCCEEEEeC
Confidence 45799999766552 22345566677777654 4555555 555555444 333445677455432
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCC------------H-H
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRD------------F-F 584 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d------------~-~ 584 (615)
...+..+-..+ .....||+-+=.... ..+++++.+|+..++..++-.++.... . .
T Consensus 124 ~~~~~~~~~~l-~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~ 191 (329)
T TIGR01481 124 GTITEKLREEF-SRSPVPVVLAGTVDK-----------ENELPSVNIDYKQATKEAVGELIAKGHKSIAFVGGPLSDSIN 191 (329)
T ss_pred CCCChHHHHHH-HhcCCCEEEEecCCC-----------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccccc
Confidence 22222221222 234578876521110 234567777776554444443443321 1 1
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
-..|+..|+..+.+
T Consensus 192 ~~~R~~Gf~~~l~~ 205 (329)
T TIGR01481 192 GEDRLEGYKEALNK 205 (329)
T ss_pred hHHHHHHHHHHHHH
Confidence 25667777665543
No 140
>KOG3857|consensus
Probab=48.85 E-value=35 Score=37.82 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=53.7
Q ss_pred eEEEEeC-CCCCHHHHHHHHHHhhccCCCee---EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALG-SSSDLPFANKIDDANHDPQWSDE---QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~g-s~SD~~~~~~~~~~l~~~gi~~~---~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
++.+++- .-+-++-.+.+.+.|++-||+++ .|- ..- |-.-+.+-+ +-+++..++ .|||+.
T Consensus 72 k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~-~eP---tv~s~~~al-----------efak~~~fD-s~vaiG 135 (465)
T KOG3857|consen 72 KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQ-PEP---TVGSVTAAL-----------EFAKKKNFD-SFVAIG 135 (465)
T ss_pred ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCcc-CCC---chhhHHHHH-----------HHHHhcccc-eEEEEc
Confidence 4556653 44567778899999999999997 111 000 111222222 333445687 999999
Q ss_pred CCCCCc----hhhh---------------------cccCCCCeeccCCCCC
Q psy246 519 GKSNGL----GPVI---------------------SGNTCYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~L----~gvv---------------------a~~t~~PVI~vP~~~~ 544 (615)
|+|+|= +.+. ++..-+|.|++|+..+
T Consensus 136 GGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaG 186 (465)
T KOG3857|consen 136 GGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAG 186 (465)
T ss_pred CcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEecccCCC
Confidence 999762 2222 2344689999999763
No 141
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=48.81 E-value=4.2e+02 Score=29.46 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEe-cccCCCcccccCCCcccccccccccccccccccccchhhhh
Q psy246 347 CYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSD-VIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLN 425 (615)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD-~itpDs~Rlw~~~~~~~~~DKq~~R~~~~~~~~~l~~Vken 425 (615)
...+++-|-+++.++.|.|+-.-- +.++.+|+++-.| -++-|-.-+.... |..-+|+....+ -.+.
T Consensus 177 ~~~~~~~l~~~f~~~d~~l~EINP-l~~~~~g~~~alD~k~~~Ddna~~r~~------~~~~~~~~~~~~------~~e~ 243 (392)
T PRK14046 177 AVKTIMGCYRAFRDLDATMLEINP-LVVTKDDRVLALDAKMSFDDNALFRRP------NIAEMRDPSQED------PREA 243 (392)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEEc-ceEcCCCcEEEEeeeECccCCchhcCh------hHHhhcCcccCC------hhHH
Confidence 345566666677777777765110 4455689999999 4444443333211 112234332211 1122
Q ss_pred HHHHHHHhhc-ccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee---EEEecccCCcchHHHHHHHHhhHHHHHHH
Q psy246 426 FTWIADTLAS-VKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDE---QILSANLDNVARDEVQIMKRLSLVVFEIL 501 (615)
Q Consensus 426 Y~eVA~~L~~-~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~---~V~saHR~~~~p~~~~~~~~~~~~~~~~l 501 (615)
+ ++.... +.. .++.|+++..|.. -+.-+.+++..+|.+.. -+.+. - +|+.+.+.+ ++
T Consensus 244 ~---a~~~~l~yv~-l~G~ig~i~nGaG---l~m~t~D~i~~~gg~paNPlDlgg~-a---~~e~~~~aL-------~~- 304 (392)
T PRK14046 244 Q---AAEHGLSYVG-LDGDIGCIVNGAG---LAMATMDMIKLAGGEPANFLDVGGG-A---SPERVAKAF-------RL- 304 (392)
T ss_pred H---HHHcCCceEc-cCCcEEEEeCCcc---HHHHHHHHHHhcCCCCcCCEEecCC-C---CHHHHHHHH-------HH-
Confidence 2 222111 112 3678999987743 45556677778887765 45333 3 666666554 22
Q ss_pred HhhhhcCCCCEEEEEecCCCCC----chhhhcc--c--CCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHH
Q psy246 502 VMKSWSSGKNVVFIAVAGKSNG----LGPVISG--N--TCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALA 573 (615)
Q Consensus 502 ~~~~~~~~~~~V~Ia~AG~~~~----L~gvva~--~--t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~ 573 (615)
..+..+++.|+|-+.|.... ..+++.+ . +..||+.+- .....+....+++ -+|+||..-++-..||-.
T Consensus 305 --ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l-~G~~~e~~~~iL~-~~Gipvf~~~~~~~a~~~ 380 (392)
T PRK14046 305 --VLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRL-AGTNVEEGRKILA-ESGLPIITADTLAEAAEK 380 (392)
T ss_pred --HHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEc-CCCCHHHHHHHHH-HcCCCeeecCCHHHHHHH
Confidence 23345677566544433221 1222322 1 568985543 2212223333333 369999988999999999
Q ss_pred HHHHHc
Q psy246 574 AAQILA 579 (615)
Q Consensus 574 A~~Il~ 579 (615)
|+++..
T Consensus 381 ~v~~~~ 386 (392)
T PRK14046 381 AVEAWK 386 (392)
T ss_pred HHHHHh
Confidence 887653
No 142
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=47.73 E-value=1.8e+02 Score=31.48 Aligned_cols=103 Identities=9% Similarity=0.051 Sum_probs=64.4
Q ss_pred hhhhhHHHHHHHhhc-ccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHH
Q psy246 421 QVKLNFTWIADTLAS-VKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFE 499 (615)
Q Consensus 421 ~VkenY~eVA~~L~~-~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~ 499 (615)
.....+..+.+.+.. .....++.|-|+-++.-...-.+++...|+.+|+.+..+...-. +.+++.++.
T Consensus 123 G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~---t~~e~~~~~-------- 191 (398)
T PF00148_consen 123 GYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGT---TLEEIRKAP-------- 191 (398)
T ss_dssp HHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTB---CHHHHHHGG--------
T ss_pred hHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCC---CHHHHHhCC--------
Confidence 344455555555522 22224567888755544458889999999999998876655555 777776553
Q ss_pred HHHhhhhcCCCCEEEEEecCCCCC-chhhhcccCCCCeeccCCCCC
Q psy246 500 ILVMKSWSSGKNVVFIAVAGKSNG-LGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 500 ~l~~~~~~~~~~~V~Ia~AG~~~~-L~gvva~~t~~PVI~vP~~~~ 544 (615)
.+. +-|++-.-.+. ++-.+.-....|.+.+|.+-+
T Consensus 192 ---------~A~-lniv~~~~~~~~~a~~L~e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 192 ---------EAA-LNIVLCPEGGPYAAEWLEERFGIPYLYFPSPYG 227 (398)
T ss_dssp ---------GSS-EEEESSCCHHHHHHHHHHHHHT-EEEEEC-SBS
T ss_pred ---------cCc-EEEEeccchhhHHHHHHHHHhCCCeeecccccc
Confidence 233 56665555444 556666667889999876664
No 143
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=47.62 E-value=2.8e+02 Score=27.10 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=19.5
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
|+++.-+.++ ..+.+.+.+.+++.|+...
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 33 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVT 33 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEE
Confidence 5666654444 4567778888888887765
No 144
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.37 E-value=1.7e+02 Score=28.84 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=40.5
Q ss_pred EEEEeCCCCCH---HHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 444 VVLALGSSSDL---PFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 444 V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
|+++..+.+|. .+.+.+...++++|..+. .+..... .++...+++ +.+..++++ -+|..+.
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i-----------~~~~~~~~d-giIi~~~ 66 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADY---DLNKQVSQI-----------DNFIAAKVD-LILLNAV 66 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCC---CHHHHHHHH-----------HHHHHhCCC-EEEEeCC
Confidence 56666554442 334455566677555555 4444445 565555554 334445666 3443433
Q ss_pred CCCCchhhhcc--cCCCCeeccC
Q psy246 520 KSNGLGPVISG--NTCYPVINCP 540 (615)
Q Consensus 520 ~~~~L~gvva~--~t~~PVI~vP 540 (615)
........+.- ....|||.+-
T Consensus 67 ~~~~~~~~i~~~~~~~ipvv~~~ 89 (271)
T cd06321 67 DSKGIAPAVKRAQAAGIVVVAVD 89 (271)
T ss_pred ChhHhHHHHHHHHHCCCeEEEec
Confidence 32222333322 2346777763
No 145
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=46.09 E-value=1.1e+02 Score=31.91 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=48.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCC
Q psy246 445 VLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNG 523 (615)
Q Consensus 445 ~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~ 523 (615)
.|+=|..+......++...|++.|++++ ... - .+.+..+++ +++...+.+ ++ +++|+.+.
T Consensus 4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t-~-----~~~~a~~~a-----------~~~~~~~~d-~v-v~~GGDGT 64 (293)
T TIGR03702 4 LILNGKQADNEDVREAVGDLRDEGIQLHVRVT-W-----EKGDAQRYV-----------AEALALGVS-TV-IAGGGDGT 64 (293)
T ss_pred EEEeCCccchhHHHHHHHHHHHCCCeEEEEEe-c-----CCCCHHHHH-----------HHHHHcCCC-EE-EEEcCChH
Confidence 3444444455567788888999999886 422 2 223344444 444445666 44 47788999
Q ss_pred chhhhcccCC------CCeeccCCCC
Q psy246 524 LGPVISGNTC------YPVINCPPLD 543 (615)
Q Consensus 524 L~gvva~~t~------~PVI~vP~~~ 543 (615)
+.-|+.|+.. .|.--+|.-+
T Consensus 65 i~ev~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 65 LREVATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEcCCc
Confidence 9999888742 2444456544
No 146
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=45.84 E-value=1.7e+02 Score=27.57 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=42.1
Q ss_pred EEEEeCCC-C---CHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 444 VVLALGSS-S---DLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 444 V~Ii~gs~-S---D~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
|+++..+. + -....+.+...+++.|..++ .+...+. .++...+.+ +.+...+++ .+|...
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~-----------~~~~~~~~d-~ii~~~ 66 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQS---DPERALEAL-----------RDLIQQGVD-GIIGPP 66 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCC---CHHHHHHHH-----------HHHHHcCCC-EEEecC
Confidence 56666443 2 23344556667777444444 4555555 555555554 334444676 555544
Q ss_pred CCCCCc-hhhhcccCCCCeeccCC
Q psy246 519 GKSNGL-GPVISGNTCYPVINCPP 541 (615)
Q Consensus 519 G~~~~L-~gvva~~t~~PVI~vP~ 541 (615)
...... ..-.+.....|||.+-.
T Consensus 67 ~~~~~~~~~~~~~~~~ip~v~~~~ 90 (269)
T cd01391 67 SSSSALAVVELAAAAGIPVVSLDA 90 (269)
T ss_pred CCHHHHHHHHHHHHcCCcEEEecC
Confidence 332222 11223356788887644
No 147
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=45.39 E-value=2.4e+02 Score=28.61 Aligned_cols=84 Identities=10% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|+++..+.+| ..+.+.+...+++.|+... +...+. .+++..++. +....++++ .+|..
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~-~~~~~~---d~~~~~~~~-----------~~l~~~~~d-giii~ 89 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV-VLDSQN---NPAKELANV-----------QDLTVRGTK-ILLIN 89 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEE-EecCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEc
Confidence 5589999987665 3445566778888997774 344455 666555554 334445676 55555
Q ss_pred cCCCCCchhhhcc--cCCCCeeccC
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCP 540 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP 540 (615)
+.....+...+.- ....|||.+-
T Consensus 90 ~~~~~~~~~~l~~~~~~~ipvV~~~ 114 (295)
T PRK10653 90 PTDSDAVGNAVKMANQANIPVITLD 114 (295)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEEc
Confidence 4433332222221 2356887764
No 148
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=45.30 E-value=33 Score=36.54 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCC-----HHHHHHHHHHhhccCCCee
Q psy246 442 NLVVLALGSSSD-----LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 442 ~~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~ 472 (615)
.+|+|++||.|. +.-++.+.++|+..|..+.
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 379999999999 4667888999988888775
No 149
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=45.14 E-value=41 Score=38.76 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=55.6
Q ss_pred hhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC-chhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC--
Q psy246 505 SWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS-TGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR-- 581 (615)
Q Consensus 505 ~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~-g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~-- 581 (615)
+...|++ |||+-.|. +.++-.++++|||-++++.- =+.+|.-.-+.+.-++++.-.+..+.+-.-..+|+..
T Consensus 50 ~~~~~~d-viIsrG~t----a~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~ 124 (526)
T TIGR02329 50 LGAERCD-VVVAGGSN----GAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIV 124 (526)
T ss_pred HHhCCCc-EEEECchH----HHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceE
Confidence 4556787 99987665 45666788999999998653 2222222224466677777777777777778888763
Q ss_pred ------CHHHHHHHHHHHH
Q psy246 582 ------DFFIWSKLRMYQT 594 (615)
Q Consensus 582 ------d~~l~~kl~~~~~ 594 (615)
..++...++..+.
T Consensus 125 ~~~~~~~~e~~~~~~~l~~ 143 (526)
T TIGR02329 125 QRSYVTEEDARSCVNDLRA 143 (526)
T ss_pred EEEecCHHHHHHHHHHHHH
Confidence 2356666655544
No 150
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.03 E-value=2.9e+02 Score=27.08 Aligned_cols=107 Identities=11% Similarity=0.051 Sum_probs=57.2
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++.-+.++ ..+.+.+.+.+++.|+... +...+- .+++..+++ +....++++-|||. ...
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~~dgiii~-~~~ 65 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGYSPI-IATGHW---NQSRELEAL-----------ELLKSRRVDALILL-GGD 65 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHHHHHHHH-----------HHHHHCCCCEEEEe-CCC
Confidence 6666655444 2345567788888996663 444455 666666666 55566678845554 332
Q ss_pred CCCchhhhcc-cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc
Q psy246 521 SNGLGPVISG-NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA 579 (615)
Q Consensus 521 ~~~L~gvva~-~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~ 579 (615)
... ..+.. ....||+.+=.... ..+++.+..++...+..++-.++.
T Consensus 66 ~~~--~~~~~~~~~iPvV~i~~~~~-----------~~~~~~V~~d~~~a~~~~~~~l~~ 112 (265)
T cd06290 66 LPE--EEILALAEEIPVLAVGRRVP-----------GPGAASIAVDNFQGGYLATQHLID 112 (265)
T ss_pred CCh--HHHHHHhcCCCEEEECCCcC-----------CCCCCEEEECcHHHHHHHHHHHHH
Confidence 111 11111 22578776532211 134566666666555554444543
No 151
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=44.83 E-value=2.8e+02 Score=27.26 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=54.2
Q ss_pred EEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|++++.+.+|. ...+.+.+.+++.|+.+. +..... .++...+++ +....++++ .+|..+..
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giii~~~~ 65 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQLL-IACSDD---DPETERETV-----------ETLIARQVD-ALIVAGSL 65 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEcCCC
Confidence 67777665552 233455566778887664 333344 555555555 444556787 55555543
Q ss_pred CCC--chhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc
Q psy246 521 SNG--LGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA 579 (615)
Q Consensus 521 ~~~--L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~ 579 (615)
... +.-... -..||+.+=.... .+.++.+..|+-..+..+|-.++.
T Consensus 66 ~~~~~~~~~~~--~~ipvV~~~~~~~-----------~~~~~~V~~d~~~~g~~~~~~l~~ 113 (264)
T cd06274 66 PPDDPYYLCQK--AGLPVVALDRPGD-----------PSRFPSVVSDNRDGAAELTRELLA 113 (264)
T ss_pred CchHHHHHHHh--cCCCEEEecCccC-----------CCCCCEEEEccHHHHHHHHHHHHH
Confidence 222 222222 3457766522111 123455555655555444444443
No 152
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.54 E-value=1.7e+02 Score=28.84 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=43.5
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEe-cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILS-ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~s-aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|+|+....+| ..+++.+.+.+++.|+...-+.+ ... ++++..+++ +..-.++++-||| ..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~i-----------~~l~~~~vdgvii-~~ 65 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASET---DVAGQVNLL-----------ENAIARGPDAILL-AP 65 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCC---CHHHHHHHH-----------HHHHHhCCCEEEE-cC
Confidence 47777765444 23455666777888877652222 244 666665555 3334446774444 33
Q ss_pred CCCCCchhhhcc--cCCCCeecc
Q psy246 519 GKSNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 519 G~~~~L~gvva~--~t~~PVI~v 539 (615)
.........+.. ....|||.+
T Consensus 66 ~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 66 TDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred CChhhhHHHHHHHHHCCCCEEEe
Confidence 333222334333 345688775
No 153
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=44.03 E-value=3e+02 Score=26.39 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=47.5
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++.-+.++ ....+.+...++.+|+... +..... .+++..+.+ +.+-.++++ .+|.....
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~~~~~~~d-~iii~~~~ 65 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVL-LCNSDE---DPEKEREAL-----------ELLLSRRVD-GIILAPSR 65 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEE-EEcCCC---CHHHHHHHH-----------HHHHHcCcC-EEEEecCC
Confidence 5556544322 3344567777788887775 333444 565555555 444456787 77766666
Q ss_pred CCCchhhhcccCCCCeeccC
Q psy246 521 SNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP 540 (615)
+..+.--.+.....|||.+=
T Consensus 66 ~~~~~~~~~~~~~ipvv~~~ 85 (264)
T cd06267 66 LDDELLEELAALGIPVVLVD 85 (264)
T ss_pred cchHHHHHHHHcCCCEEEec
Confidence 66655112345678888874
No 154
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.95 E-value=2.6e+02 Score=27.67 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=41.6
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|++++...++ ...++.+.+.+++.|+... +...+. .++.-.+++ +.+..++++-+|| .+.
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~-~~~~~~---~~~~~~~~i-----------~~~~~~~~Dgiii-~~~ 64 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELI-STDAQG---DLTKQIADV-----------EDLLTRGVNVLII-NPV 64 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEE-EEcCCC---CHHHHHHHH-----------HHHHHcCCCEEEE-ecC
Confidence 36777766555 2334456677777887653 334444 555555554 4444567773444 333
Q ss_pred CCCCchhhhcc--cCCCCeecc
Q psy246 520 KSNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 520 ~~~~L~gvva~--~t~~PVI~v 539 (615)
...++...+.- .-..|||-+
T Consensus 65 ~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 65 DPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred CccchHHHHHHHHHCCCCEEEe
Confidence 33333333322 234576654
No 155
>PRK13337 putative lipid kinase; Reviewed
Probab=43.54 E-value=44 Score=35.12 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh
Q psy246 449 GSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV 527 (615)
Q Consensus 449 gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv 527 (615)
|+.+.....+++...|++.|++++ ..... +.+..+++ +++...+.+ + |.++|+.+.+..|
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~~------~~~a~~~a-----------~~~~~~~~d-~-vvv~GGDGTl~~v 73 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATTG------PGDATLAA-----------ERAVERKFD-L-VIAAGGDGTLNEV 73 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEecC------CCCHHHHH-----------HHHHhcCCC-E-EEEEcCCCHHHHH
Confidence 333334566778888999999886 33332 23444444 444445666 4 4577888999999
Q ss_pred hcccC
Q psy246 528 ISGNT 532 (615)
Q Consensus 528 va~~t 532 (615)
+.++.
T Consensus 74 v~gl~ 78 (304)
T PRK13337 74 VNGIA 78 (304)
T ss_pred HHHHh
Confidence 98754
No 156
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=43.51 E-value=2.8e+02 Score=27.05 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=43.1
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++.-+.++ ....+.+.+.++++|+... +..... .+++..+++ +.+..++++ .+|..+..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giii~~~~ 65 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQLL-LGNTGY---SPEREEELL-----------RTLLSRRPA-GLILTGLE 65 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCEEE-EecCCC---CchhHHHHH-----------HHHHHcCCC-EEEEeCCC
Confidence 5566644333 3445677788899997763 444455 565555555 444445677 45444433
Q ss_pred CCCchhhhcc--cCCCCeecc
Q psy246 521 SNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvva~--~t~~PVI~v 539 (615)
.. ...+.- ....||+.+
T Consensus 66 ~~--~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 66 HT--ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred CC--HHHHHHHHhcCCCEEEE
Confidence 22 223322 335788876
No 157
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.33 E-value=3.1e+02 Score=27.13 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=38.2
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccC---CCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQ---WSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~g---i~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
|+++..+.++ ..+.+.+...++++| ..+. .+.+... .++...++. +....++++ .||.
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~---~~~~~~~~~-----------~~l~~~~vD-giii 66 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASN---DTEQQNAQQ-----------DLLINRKID-ALVI 66 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCC---CHHHHHHHH-----------HHHHHcCCC-EEEE
Confidence 4555554444 234455556666653 3344 4444444 444444444 434445666 4444
Q ss_pred ecCCCCCchhhhc--ccCCCCeecc
Q psy246 517 VAGKSNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 517 ~AG~~~~L~gvva--~~t~~PVI~v 539 (615)
.......+...+. .....|||.+
T Consensus 67 ~~~~~~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 67 LPFESAPLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred eCCCchhhHHHHHHHHHCCCeEEEE
Confidence 4433333333332 2345677665
No 158
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=43.20 E-value=3.9e+02 Score=27.45 Aligned_cols=130 Identities=10% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++ ..+.+.+...+++.|+.. .+...+. .+++..+++ +....++++-+|| .
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~-~i~~~~~---~~~~~~~~~-----------~~l~~~~vdgiIi-~ 123 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGYQL-LIACSDD---NPDQEKVVI-----------ENLLARQVDALIV-A 123 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHHcCCCEEEE-e
Confidence 4579999876554 345667777788888776 4555555 666555554 4445567874444 3
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCC------------H
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRD------------F 583 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d------------~ 583 (615)
...... ...+.- ....||+-+=.... ..+++++..|+-.++..++..++.... .
T Consensus 124 ~~~~~~-~~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~~~~~ 191 (327)
T TIGR02417 124 SCMPPE-DAYYQKLQNEGLPVVALDRSLD-----------DEHFCSVISDDVDAAAELIERLLSQHADEFWYLGAQPELS 191 (327)
T ss_pred CCCCCC-hHHHHHHHhcCCCEEEEccccC-----------CCCCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEeCcccch
Confidence 322111 122221 23578775532211 123566667777766665555553321 2
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 ~l~~kl~~~~~~~~~ 598 (615)
....|++.|+..+.+
T Consensus 192 ~~~~R~~Gf~~al~~ 206 (327)
T TIGR02417 192 VSRDRLAGFRQALKQ 206 (327)
T ss_pred hHHHHHHHHHHHHHH
Confidence 234577777766544
No 159
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=42.72 E-value=25 Score=37.75 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=54.9
Q ss_pred eEEEEeCCCCCHH-----HHHHHHHHhhccCCCee--EEEecccCCcchHHHH-HHHH-----hhHHHHHHHH-------
Q psy246 443 LVVLALGSSSDLP-----FANKIDDANHDPQWSDE--QILSANLDNVARDEVQ-IMKR-----LSLVVFEILV------- 502 (615)
Q Consensus 443 ~V~Ii~gs~SD~~-----~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~-~~~~-----~~~~~~~~l~------- 502 (615)
+|+|++||.|-.. -++.+...|+..|..+. .+..-++ -+.|.... .+.. ......++..
T Consensus 3 ~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 3 KIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGG-WVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred EEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCC-Eeecccccccccccccccccccccccccccccccc
Confidence 6999999999743 45667777888888776 2222121 11222110 0000 0000000000
Q ss_pred hhhhcCCCCEEEEEecC---CCCCchhhhcccCCCCeeccCCCCC
Q psy246 503 MKSWSSGKNVVFIAVAG---KSNGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG---~~~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
........+.||++.-| -.+++++++. ...+|++|+++.++
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le-~~gipy~Gs~~~a~ 125 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLD-TLGIPYTGSGVLAS 125 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHH-HcCcCcCCCCHHHH
Confidence 00112346789999844 4678999998 45799999877554
No 160
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=42.51 E-value=61 Score=35.13 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=21.8
Q ss_pred hcCCCCEEEEEecCCCCCchhhhcc-cCCCCeecc
Q psy246 506 WSSGKNVVFIAVAGKSNGLGPVISG-NTCYPVINC 539 (615)
Q Consensus 506 ~~~~~~~V~Ia~AG~~~~L~gvva~-~t~~PVI~v 539 (615)
....-+ ++++..-....|++.+|| ...+||+.+
T Consensus 90 ~~~~Pd-~vlv~GD~~~~la~alaA~~~~IPv~Hv 123 (365)
T TIGR03568 90 ERLKPD-LVVVLGDRFEMLAAAIAAALLNIPIAHI 123 (365)
T ss_pred HHhCCC-EEEEeCCchHHHHHHHHHHHhCCcEEEE
Confidence 333455 666666577777766655 678899954
No 161
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.46 E-value=2.7e+02 Score=27.42 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=59.2
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|++++.+.++ ..+.+.+.+.+++.|+.. -+...+. +++.-.+++ +....++++.+||..+..
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~i-----------~~l~~~~vdgiIi~~~~~ 66 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYTV-LLCNTYR---GGVSEADYV-----------EDLLARGVRGVVFISSLH 66 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHHcCCCEEEEeCCCC
Confidence 6667655443 334567788888888765 4555555 666665555 555556787455543322
Q ss_pred C--CCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHH
Q psy246 521 S--NGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQIL 578 (615)
Q Consensus 521 ~--~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il 578 (615)
. .+++..+.. ....||+.+=....+ .+.++++..++-..+..++-.++
T Consensus 67 ~~~~~~~~~i~~~~~~~ipvV~i~~~~~~----------~~~~~~V~~d~~~~~~~~~~~l~ 118 (273)
T cd06292 67 ADTHADHSHYERLAERGLPVVLVNGRAPP----------PLKVPHVSTDDALAMRLAVRHLV 118 (273)
T ss_pred CcccchhHHHHHHHhCCCCEEEEcCCCCC----------CCCCCEEEECcHHHHHHHHHHHH
Confidence 1 233333432 346788776432211 12356666665555554444444
No 162
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=42.42 E-value=32 Score=39.23 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=37.6
Q ss_pred cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEEEEecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 477 ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVFIAVAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 477 aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~Ia~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
.|+ +.+.+.++. +.+.+.|+ + ++||+.|+ ..-++|++|+ .--.|.|.|||.
T Consensus 216 ~~k---~l~~v~~~~-----------~~l~~~~~~R~d-~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 216 EVK---TLEHVSRAY-----------YELVRMDFPRGK-TIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCC---CHHHHHHHH-----------HHHHHcCCCCCC-eEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 466 777776665 44444566 6 88888887 4678999998 458899999974
No 163
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=42.42 E-value=2.9e+02 Score=27.21 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=12.7
Q ss_pred EEEEeCCCCCHHHH----HHHHHHhhc-cCCCe
Q psy246 444 VVLALGSSSDLPFA----NKIDDANHD-PQWSD 471 (615)
Q Consensus 444 V~Ii~gs~SD~~~~----~~~~~~l~~-~gi~~ 471 (615)
|+++..+.+| ++. +.+.+++++ .|+..
T Consensus 2 igvi~~~~~~-~~~~~~~~gi~~~~~~~~~~~~ 33 (272)
T cd06301 2 IGVSMANFDD-NFLTLLRNAMKEHAKVLGGVEL 33 (272)
T ss_pred eeEeecccCC-HHHHHHHHHHHHHHHHcCCcEE
Confidence 5555554444 222 344444555 55444
No 164
>PRK13054 lipid kinase; Reviewed
Probab=41.26 E-value=85 Score=32.89 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=43.6
Q ss_pred eEEEEeCCCC-CHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSS-DLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~S-D~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
++.+|.-+.+ =.....++...|++-|++++-...- .+.+..+++ +++...+.+ ++| ++|+.
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~-----~~~~a~~~a-----------~~~~~~~~d-~vv-v~GGD 66 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTW-----EKGDAARYV-----------EEALALGVA-TVI-AGGGD 66 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEec-----CCCcHHHHH-----------HHHHHcCCC-EEE-EECCc
Confidence 4445444444 3456667777889999887522222 223344444 444445676 444 77889
Q ss_pred CCchhhhcccC
Q psy246 522 NGLGPVISGNT 532 (615)
Q Consensus 522 ~~L~gvva~~t 532 (615)
+.+..|+.++.
T Consensus 67 GTl~evv~~l~ 77 (300)
T PRK13054 67 GTINEVATALA 77 (300)
T ss_pred cHHHHHHHHHH
Confidence 99999998854
No 165
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.92 E-value=1.7e+02 Score=29.84 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=45.8
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|+++..+.++ ..+.+.+...++++|+.+.-+..... .++...+++ +.+..++++ -||..+.
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~---d~~~~~~~i-----------~~~~~~~~D-giIi~~~ 65 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTA---DAAGQVQII-----------EDLIAQGVD-AIAVVPN 65 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEecC
Confidence 47777776666 23456677778888887653334444 666665555 444445677 5555543
Q ss_pred CCCCchhhhc--ccCCCCeecc
Q psy246 520 KSNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 520 ~~~~L~gvva--~~t~~PVI~v 539 (615)
....+...+. .....|||.+
T Consensus 66 ~~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 66 DPDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred CHHHHHHHHHHHHHCCCeEEEE
Confidence 3222233322 2345687765
No 166
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.88 E-value=3.6e+02 Score=26.43 Aligned_cols=78 Identities=8% Similarity=0.030 Sum_probs=42.9
Q ss_pred EEEEeCCCC---CHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSS---DLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~S---D~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|+.-+.+ .....+.+.+.+++.|+.. .+...+. .++...+++ +....++++ .+|..+..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~i-----------~~l~~~~~d-giii~~~~ 65 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYDV-VLSESGR---RTSPERQWV-----------ERLSARRTD-GVILVTPE 65 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCeE-EEecCCC---chHHHHHHH-----------HHHHHcCCC-EEEEecCC
Confidence 566665533 3566677888888888766 4445555 554444444 334445677 55544433
Q ss_pred CCCchhhhc--ccCCCCeecc
Q psy246 521 SNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvva--~~t~~PVI~v 539 (615)
... ..+. ..-..||+.+
T Consensus 66 ~~~--~~~~~~~~~~ipvV~i 84 (270)
T cd06296 66 LTS--AQRAALRRTGIPFVVV 84 (270)
T ss_pred CCh--HHHHHHhcCCCCEEEE
Confidence 221 1222 2335687775
No 167
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=40.54 E-value=3.6e+02 Score=26.28 Aligned_cols=78 Identities=9% Similarity=-0.038 Sum_probs=44.1
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+|++...++ ....+.+.+.+++.|+... +...+. ++++..+++ +....++++ .+|.....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~~d-gii~~~~~ 65 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQML-LMNTNF---SIEKEIEAL-----------ELLARQKVD-GIILLATT 65 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeCCC
Confidence 6777765444 2456677788888897764 344566 677666665 444456787 44444322
Q ss_pred CCCchhhhcc--cCCCCeecc
Q psy246 521 SNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvva~--~t~~PVI~v 539 (615)
.. +.++.. ....|||.+
T Consensus 66 -~~-~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 66 -IT-DEHREAIKKLNVPVVVV 84 (259)
T ss_pred -CC-HHHHHHHhcCCCCEEEE
Confidence 11 122222 224688766
No 168
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=40.19 E-value=3.7e+02 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.036 Sum_probs=19.3
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
|+|++.+.++ ..+.+.+...+++.|+...
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 33 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQLV 33 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCeEE
Confidence 6777755443 4455677777888887765
No 169
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=38.92 E-value=3e+02 Score=26.56 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=41.0
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|++|....++ ..+.+.+...+++.|+.+. +...+. +++...+++ +....++++ .+|....
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-gvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELI-VLDAQN---DVSKQIQQI-----------EDLIAQGVD-GIIISPV 64 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEE-EECCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeCC
Confidence 36666654333 3355566677777777764 333333 555554444 333334676 5555443
Q ss_pred CCCCchhhhcc--cCCCCeeccC
Q psy246 520 KSNGLGPVISG--NTCYPVINCP 540 (615)
Q Consensus 520 ~~~~L~gvva~--~t~~PVI~vP 540 (615)
....+...+.- ....|||.+-
T Consensus 65 ~~~~~~~~~~~l~~~~ip~V~~~ 87 (267)
T cd01536 65 DSAALTPALKKANAAGIPVVTVD 87 (267)
T ss_pred CchhHHHHHHHHHHCCCcEEEec
Confidence 33322222222 2346777653
No 170
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.68 E-value=3.9e+02 Score=26.14 Aligned_cols=96 Identities=9% Similarity=0.122 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhc--ccC
Q psy246 455 PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVIS--GNT 532 (615)
Q Consensus 455 ~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva--~~t 532 (615)
...+.+...+++.|+... +...+. ..+....+. +.....+++ .+|..+...+ ...+. ...
T Consensus 21 ~~~~~~~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~~~~~~~d-giii~~~~~~--~~~~~~~~~~ 82 (270)
T cd06294 21 EVLRGISAVANENGYDIS-LATGKN---EEELLEEVK-----------KMIQQKRVD-GFILLYSRED--DPIIDYLKEE 82 (270)
T ss_pred HHHHHHHHHHHHCCCEEE-EecCCC---cHHHHHHHH-----------HHHHHcCcC-EEEEecCcCC--cHHHHHHHhc
Confidence 466778888889997764 433333 223333322 323334566 4454443322 22332 234
Q ss_pred CCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHH
Q psy246 533 CYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQIL 578 (615)
Q Consensus 533 ~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il 578 (615)
..||+.+-.... .+.+++.+..|+-..+..++-.++
T Consensus 83 ~ipvV~~~~~~~----------~~~~~~~v~~d~~~~g~~~~~~l~ 118 (270)
T cd06294 83 KFPFVVIGKPED----------DKENITYVDNDNIQAGYDATEYLI 118 (270)
T ss_pred CCCEEEECCCCC----------CCCCCCeEEECcHHHHHHHHHHHH
Confidence 568877643211 124567777776555555544444
No 171
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.57 E-value=1e+02 Score=31.86 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=51.2
Q ss_pred EEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCc
Q psy246 446 LALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGL 524 (615)
Q Consensus 446 Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L 524 (615)
-+.-+.||...+.++.+..++.|..+. .+..++| .+|+++.+++ +.+.+.|++ .|.++-..+.+
T Consensus 103 ri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~--~~~~~~~~~~-----------~~~~~~G~d--~i~l~DT~G~~ 167 (263)
T cd07943 103 RVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHM--ASPEELAEQA-----------KLMESYGAD--CVYVTDSAGAM 167 (263)
T ss_pred EEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccC--CCHHHHHHHH-----------HHHHHcCCC--EEEEcCCCCCc
Confidence 334588899999999999999999887 7766766 6889988888 666667887 45777777666
Q ss_pred hh
Q psy246 525 GP 526 (615)
Q Consensus 525 ~g 526 (615)
.+
T Consensus 168 ~P 169 (263)
T cd07943 168 LP 169 (263)
T ss_pred CH
Confidence 54
No 172
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=38.45 E-value=2e+02 Score=28.16 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCH----HHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSSSDL----PFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~----~~~~~~~~~l~~~gi~~~ 472 (615)
..+|+++.|+..+. ...+...+++++.|++..
T Consensus 116 ~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~ 151 (268)
T cd06273 116 HRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELP 151 (268)
T ss_pred CCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCC
Confidence 45899998765332 456777888999998765
No 173
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=38.00 E-value=3.1e+02 Score=30.87 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=70.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCc-chHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNV-ARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~-~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.-+|=+|...|+.+.+=..-..++... +++..|-..+ .+.++.+.+ +.+. ++.+ |++-.+|++
T Consensus 178 s~~vs~Gn~~d~~~~d~l~~l~~D~~t---~~I~ly~E~~~~~~~f~~aa-----------~~a~-~~KP-Vv~~k~Grs 241 (447)
T TIGR02717 178 SYFVSLGNKADIDESDLLEYLADDPDT---KVILLYLEGIKDGRKFLKTA-----------REIS-KKKP-IVVLKSGTS 241 (447)
T ss_pred ceEEECCchhhCCHHHHHHHHhhCCCC---CEEEEEecCCCCHHHHHHHH-----------HHHc-CCCC-EEEEecCCC
Confidence 466788999998766444333344333 4444442111 455555444 4443 3666 999999998
Q ss_pred CCchhhhcccCCCCee------------ccCCCCCchhhhhhhh------cCCCCceeeeecChhhHHHHHHHHHccC--
Q psy246 522 NGLGPVISGNTCYPVI------------NCPPLDSTGRDVWSSL------NLPAGIACSTVTAPSNAALAAAQILAQR-- 581 (615)
Q Consensus 522 ~~L~gvva~~t~~PVI------------~vP~~~~g~~~l~S~l------qmp~Gv~v~tv~~~~nAa~~A~~Il~~~-- 581 (615)
.+=.-...+||.-.+= |+..-. .++.|+.++ ..|.|=-++-|.++-+++.+++-.+...
T Consensus 242 ~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~~-~~~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl 320 (447)
T TIGR02717 242 EAGAKAASSHTGALAGSDEAYDAAFKQAGVIRAD-SIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGL 320 (447)
T ss_pred hhhhhhhhhccccccChHHHHHHHHHHCCeEEeC-CHHHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCC
Confidence 6533345566643320 111111 233333333 3356766777766666777776655432
Q ss_pred -----CHHHHHHHHH
Q psy246 582 -----DFFIWSKLRM 591 (615)
Q Consensus 582 -----d~~l~~kl~~ 591 (615)
.+...++|+.
T Consensus 321 ~lp~ls~~t~~~L~~ 335 (447)
T TIGR02717 321 ELAELSEATKNKLRN 335 (447)
T ss_pred CcCCCCHHHHHHHHH
Confidence 2455566654
No 174
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=37.86 E-value=1e+02 Score=33.66 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=61.0
Q ss_pred eEEEEe--CCCCCHHHHHHHHHHhhccCC-Cee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLAL--GSSSDLPFANKIDDANHDPQW-SDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~--gs~SD~~~~~~~~~~l~~~gi-~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|+|.. -..+=-...+.+.+.|+++|. ..+ .+-++|- ++....+++ +++..++-+ |+|+++
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~---~~~~a~~ia-----------rql~~~~~d-viv~i~ 96 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQG---DLGTAAQIA-----------RQLVGDKPD-VIVAIA 96 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCC---ChHHHHHHH-----------HHhhcCCCc-EEEecC
Confidence 466654 334445677889999999999 666 8999999 999999999 888777776 999998
Q ss_pred CCCCCchhhhcccCCCCeecc
Q psy246 519 GKSNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 519 G~~~~L~gvva~~t~~PVI~v 539 (615)
+-++. .+++.-.++||+--
T Consensus 97 tp~Aq--~~~s~~~~iPVV~a 115 (322)
T COG2984 97 TPAAQ--ALVSATKTIPVVFA 115 (322)
T ss_pred CHHHH--HHHHhcCCCCEEEE
Confidence 86443 56666677999843
No 175
>KOG0091|consensus
Probab=37.65 E-value=1.4e+02 Score=30.32 Aligned_cols=105 Identities=22% Similarity=0.232 Sum_probs=64.8
Q ss_pred ccccCCCcc--cccccccccccc------cccccccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHH-----HHH
Q psy246 392 RLWPEGKKE--LMKDKQVYRNLS------NVTAEGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLP-----FAN 458 (615)
Q Consensus 392 Rlw~~~~~~--~~~DKq~~R~~~------~~~~~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~-----~~~ 458 (615)
.||+....| .++-|.+|||-- ++|.....+-.+++-+-|.+-.. .+...|-.+.|-+||+. .++
T Consensus 61 qlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q---~P~k~VFlLVGhKsDL~SqRqVt~E 137 (213)
T KOG0091|consen 61 QLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ---GPDKVVFLLVGHKSDLQSQRQVTAE 137 (213)
T ss_pred EEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC---CCCeeEEEEeccccchhhhccccHH
Confidence 478765444 366799999632 22333223333333333433322 12346888999999997 578
Q ss_pred HHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHh
Q psy246 459 KIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVM 503 (615)
Q Consensus 459 ~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~ 503 (615)
||....+..|+.+-. .|+ |..-+-++...|+ |+.||..+.+
T Consensus 138 EaEklAa~hgM~FVE-TSa-k~g~NVeEAF~ml--aqeIf~~i~q 178 (213)
T KOG0091|consen 138 EAEKLAASHGMAFVE-TSA-KNGCNVEEAFDML--AQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHhcCceEEE-ecc-cCCCcHHHHHHHH--HHHHHHHHhc
Confidence 888888999998741 122 2223556666665 9999999977
No 176
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=37.48 E-value=3.8e+02 Score=26.50 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=45.5
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhcc-CCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDP-QWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~-gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|+++.++.++ ..+.+.+...+.+. |+... +..... .++...+++ +.+-.++++ .||..+
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~~~~~~vd-giii~~ 64 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDVELI-IADAAD---DNSKQVADI-----------ENFIRQGVD-LLIISP 64 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEE-EEcCCC---CHHHHHHHH-----------HHHHHhCCC-EEEEec
Confidence 47788887777 24456666777775 77664 334444 555555554 334445677 555554
Q ss_pred CCCCCchhhhcc--cCCCCeecc
Q psy246 519 GKSNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 519 G~~~~L~gvva~--~t~~PVI~v 539 (615)
.....+...+.. ....||+.+
T Consensus 65 ~~~~~~~~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 65 NEAAPLTPVVEEAYRAGIPVILL 87 (270)
T ss_pred CchhhchHHHHHHHHCCCCEEEe
Confidence 433333333332 346688766
No 177
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=37.34 E-value=66 Score=33.40 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred eEEEEeCCCCCH-----HHHHHHHHHhhccCCCeeEEEecccCCc-chHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 443 LVVLALGSSSDL-----PFANKIDDANHDPQWSDEQILSANLDNV-ARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 443 ~V~Ii~gs~SD~-----~~~~~~~~~l~~~gi~~~~V~saHR~~~-~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
+|+|++|+.|+. ..+..+.++|++.|+.+..| ....++. +..+..+.+ .+ ........+.||.+
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i-~~~~~~~~~~~~~~~~~------~~---~~~~~~~~D~v~~~ 70 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPV-DIDKMGSWTYKDLPQLI------LE---LGALLEGIDVVFPV 70 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEE-eecCCccccccchHHHH------hh---ccccCCCCCEEEEe
Confidence 599999999974 46788899999999987622 2222110 011121111 00 01112346745555
Q ss_pred ecC---CCCCchhhhcccCCCCeeccCCCC
Q psy246 517 VAG---KSNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 517 ~AG---~~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
.-| ..+++++++. ...+|++|.++..
T Consensus 71 ~~g~~~~~~~~~~~le-~~gip~~g~~~~~ 99 (315)
T TIGR01205 71 LHGRYGEDGTIQGLLE-LMGIPYTGSGVLA 99 (315)
T ss_pred cCCCCCCCcHHHHHHH-HcCCCccCCCHHH
Confidence 433 3556666665 3468998875433
No 178
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=36.56 E-value=4.2e+02 Score=25.90 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=32.7
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
|+++..+.++ ....+.+..++++.|+....+. ... .++...+++ +....++++-|||.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~---~~~~~~~~~-----------~~l~~~~vdgiIi~ 62 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGYSTIIGN-SDE---NPETENRYL-----------DNLLSQRVDGIIVV 62 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCEEEEEe-CCC---CHHHHHHHH-----------HHHHhcCCCEEEEc
Confidence 6666654433 3455667777888887665333 333 455444444 44445577745554
No 179
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=36.44 E-value=1.7e+02 Score=32.65 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=69.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec--
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA-- 518 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A-- 518 (615)
..+|.++..| .+.+.-.++++.+|.++..+..-....++|+++.+.+ + +...++.|+++=.
T Consensus 80 gdkVLv~~nG----~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L-----------~--~~~~~~~V~~vH~ET 142 (383)
T COG0075 80 GDKVLVVVNG----KFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEAL-----------D--KDPDIKAVAVVHNET 142 (383)
T ss_pred CCeEEEEeCC----hHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHH-----------h--cCCCccEEEEEeccC
Confidence 4467777766 5788888999999999885444455577888888777 3 2335665666543
Q ss_pred --CCCCCchh------------hhcccCCCCeeccCCCCCchhhhhhhhc----CCCCceeeeec
Q psy246 519 --GKSNGLGP------------VISGNTCYPVINCPPLDSTGRDVWSSLN----LPAGIACSTVT 565 (615)
Q Consensus 519 --G~~~~L~g------------vva~~t~~PVI~vP~~~~g~~~l~S~lq----mp~Gv~v~tv~ 565 (615)
|.-+-|.. +|.+-+++.-+-+++...|+|.+.|--| .|||++.+++.
T Consensus 143 STGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S 207 (383)
T COG0075 143 STGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVS 207 (383)
T ss_pred cccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEEC
Confidence 33333333 2333444333333333338998888776 49999999884
No 180
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=36.03 E-value=60 Score=31.80 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=61.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhc--cCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 444 VVLALGSSSDLPFANKIDDANHD--PQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 444 V~Ii~gs~SD~~~~~~~~~~l~~--~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
|+|+----+-+.....|.+.|+. .|+.++ +|-++.= .|--..+++ +..+++ .|||
T Consensus 2 ~~~~~ttf~~~~M~~gA~~~L~~~g~g~~i~v~~VPGa~E---iP~aak~l~--------------~~~~~D-aVIa--- 60 (151)
T TIGR01506 2 VGIADTTFARYDMGGAAIDELRKHTAGIKIIRRTVPGIKD---LPVAAKKLL--------------EEEGCE-MVIT--- 60 (151)
T ss_pred cceecchhhhhhHHHHHHHHHHhcCCCCeEEEEECCcHhH---HHHHHHHHH--------------hcCCCC-EEEE---
Confidence 34443344556667889999998 666665 6666665 454444443 224577 7775
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC-chhhhhhhhcCCCCceeeee------------------cChhhHHHHHHHHHcc
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS-TGRDVWSSLNLPAGIACSTV------------------TAPSNAALAAAQILAQ 580 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~-g~~~l~S~lqmp~Gv~v~tv------------------~~~~nAa~~A~~Il~~ 580 (615)
|+.||-|.|+-=-. | ..+ | +..+|+-.++||.+| +-|..||..|..|+.+
T Consensus 61 ----LG~VIrGeT~Hfd~-V--~vs~G----L~~lsl~~~~PVi~VlT~e~eeQA~~Rag~~~~nkG~eaA~aaleMi~l 129 (151)
T TIGR01506 61 ----LGWVGPEEKDKLSY-H--EASTG----LIQVQLMTNKHVIDVTVHEDEAEDPEELKVLADNRAREHAQNLIMLLFK 129 (151)
T ss_pred ----eceEEcCCCCcEeH-H--HHHHH----HHHHHhhhCCCEEEEEeeCCHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 55666666643211 1 222 4 334455556666554 2467778888777766
Q ss_pred C
Q psy246 581 R 581 (615)
Q Consensus 581 ~ 581 (615)
.
T Consensus 130 ~ 130 (151)
T TIGR01506 130 P 130 (151)
T ss_pred H
Confidence 3
No 181
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=35.56 E-value=3.5e+02 Score=30.87 Aligned_cols=74 Identities=9% Similarity=-0.074 Sum_probs=46.2
Q ss_pred CCeEEEE----eCCCCCHHHHH-HHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 441 DNLVVLA----LGSSSDLPFAN-KIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 441 ~~~V~Ii----~gs~SD~~~~~-~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
+.++.|| +|..+...... ++...|+..|++++-+..-| +.+..+++ +++...+.+ .||
T Consensus 111 ~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~-----~ghA~~la-----------~~~~~~~~D-~VV 173 (481)
T PLN02958 111 PKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKY-----QLHAKEVV-----------RTMDLSKYD-GIV 173 (481)
T ss_pred CcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccC-----ccHHHHHH-----------HHhhhcCCC-EEE
Confidence 3456666 35555556544 57779999999987222222 34445555 444445677 555
Q ss_pred EecCCCCCchhhhcccC
Q psy246 516 AVAGKSNGLGPVISGNT 532 (615)
Q Consensus 516 a~AG~~~~L~gvva~~t 532 (615)
++|+.+.+--|+-|+.
T Consensus 174 -~vGGDGTlnEVvNGL~ 189 (481)
T PLN02958 174 -CVSGDGILVEVVNGLL 189 (481)
T ss_pred -EEcCCCHHHHHHHHHh
Confidence 4678888888888775
No 182
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=35.52 E-value=5.2e+02 Score=26.70 Aligned_cols=80 Identities=8% Similarity=0.045 Sum_probs=46.3
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
..|+++..+.++ ..+.+.+.+.+++.|+.. .+...+. .+++..+++ +....++++ .||..+
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giii~~ 123 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTL-ILCNAWN---NLEKQRAYL-----------SMLAQKRVD-GLLVMC 123 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEec
Confidence 478888866544 234467777888899665 4555666 677666665 444445677 555444
Q ss_pred CCCCCchhhhcc--c-CCCCeecc
Q psy246 519 GKSNGLGPVISG--N-TCYPVINC 539 (615)
Q Consensus 519 G~~~~L~gvva~--~-t~~PVI~v 539 (615)
+... +..+.- . ...||+-+
T Consensus 124 ~~~~--~~~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 124 SEYP--EPLLAMLEEYRHIPMVVM 145 (341)
T ss_pred CCCC--HHHHHHHHhcCCCCEEEE
Confidence 3211 122222 1 45688765
No 183
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.47 E-value=90 Score=33.32 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=55.2
Q ss_pred hhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHH
Q psy246 423 KLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502 (615)
Q Consensus 423 kenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~ 502 (615)
.++|.++++.+.. .+..+++.||.-|.+.++++...+...-. +++=. +..++..++
T Consensus 194 ~e~~~~l~~~l~~-----~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~----l~~k~----sL~e~~~li----------- 249 (334)
T COG0859 194 LEHYAELAELLIA-----KGYQVVLFGGPDEEERAEEIAKGLPNAVI----LAGKT----SLEELAALI----------- 249 (334)
T ss_pred HHHHHHHHHHHHH-----CCCEEEEecChHHHHHHHHHHHhcCCccc----cCCCC----CHHHHHHHH-----------
Confidence 3578888888753 23577888988888887777766532211 33222 444444443
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
. +++ .+|+.-.+-.||+..+ ..|+|++=.++
T Consensus 250 ~-----~a~-l~I~~DSg~~HlAaA~----~~P~I~iyg~t 280 (334)
T COG0859 250 A-----GAD-LVIGNDSGPMHLAAAL----GTPTIALYGPT 280 (334)
T ss_pred h-----cCC-EEEccCChHHHHHHHc----CCCEEEEECCC
Confidence 2 466 8888877777776543 44999987555
No 184
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.19 E-value=4.3e+02 Score=25.69 Aligned_cols=79 Identities=8% Similarity=0.141 Sum_probs=43.8
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++..+.++ ..+.+.+...++++|+... +.+... .++...+++ +.+..++++ .+|..+..
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~~~~~~vd-giii~~~~ 65 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGYTVF-LANSGE---DVERQEQLL-----------STMLEHGVA-GIILCPAA 65 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCCeEE-EecCCC---ChHHHHHHH-----------HHHHHcCCC-EEEEeCCC
Confidence 5666654333 3355677778888997653 333334 555555555 444556787 45544443
Q ss_pred CCCchhhh--cccCCCCeecc
Q psy246 521 SNGLGPVI--SGNTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvv--a~~t~~PVI~v 539 (615)
..... ++ +-.-..|||.+
T Consensus 66 ~~~~~-~~~~~~~~~ipvV~~ 85 (268)
T cd06289 66 GTSPD-LLKRLAESGIPVVLV 85 (268)
T ss_pred CccHH-HHHHHHhcCCCEEEE
Confidence 33333 32 22346788866
No 185
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=35.00 E-value=1.3e+02 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHhhccCCCee
Q psy246 452 SDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 452 SD~~~~~~~~~~l~~~gi~~~ 472 (615)
+.=|.+.++...|++.|++++
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~ 27 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYE 27 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEE
T ss_pred CCCcCHHHHHHHHHHcCCeee
Confidence 556899999999999999996
No 186
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.89 E-value=1.5e+02 Score=30.45 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=46.8
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|+++..+.+| ..+.+.+.++++++|..+. .+...+. .++.-.+++ +.+-.++++ .||..+
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~---~~~~q~~~i-----------~~l~~~~vd-giii~~ 65 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKN---NQSTQNEQI-----------DTALAKGVD-LLAVNL 65 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEec
Confidence 46777765554 2344677777888433344 5556677 777666655 444556787 444444
Q ss_pred CCCCCchhhhccc--CCCCeecc
Q psy246 519 GKSNGLGPVISGN--TCYPVINC 539 (615)
Q Consensus 519 G~~~~L~gvva~~--t~~PVI~v 539 (615)
.....+..++... -..|||.+
T Consensus 66 ~~~~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 66 VDPTAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred CchhhHHHHHHHHHHCCCCEEEe
Confidence 3334445554432 35688765
No 187
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.81 E-value=4.1e+02 Score=26.10 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhhccCCCee
Q psy246 453 DLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 453 D~~~~~~~~~~l~~~gi~~~ 472 (615)
-....+.+...++++|+...
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~ 36 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLI 36 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEE
Confidence 35556778888888998775
No 188
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=34.71 E-value=3.9e+02 Score=26.11 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
|++++-+.++ ..+.+.+...+++.|+... +...+. +++...+.+ +....++++-|||+
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vdgiii~ 62 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGYKVV-LLQTNY---DKEKELEYL-----------ELLKTKQVDGLILC 62 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCCEEE-EEeCCC---ChHHHHHHH-----------HHHHHcCCCEEEEe
Confidence 5666665444 4556788888888887764 444455 666655555 44445567745554
No 189
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=34.69 E-value=79 Score=27.62 Aligned_cols=50 Identities=8% Similarity=-0.085 Sum_probs=25.6
Q ss_pred HHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCc
Q psy246 457 ANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGL 524 (615)
Q Consensus 457 ~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L 524 (615)
.+++...+.+.|++++ .+...+. ..+.+.++ +++.+++ ++|.+....+.+
T Consensus 58 ~~~~~~~~~~~g~~~~~~~~~~~~---~~~~I~~~--------------a~~~~~d-lIV~G~~~~~~~ 108 (132)
T cd01988 58 LRQAERIAASLGVPVHTIIRIDHD---IASGILRT--------------AKERQAD-LIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHhhhcCCceEEEEEecCC---HHHHHHHH--------------HHhcCCC-EEEEecCCCCCc
Confidence 3445555667788877 4433343 22344433 3456787 444444444443
No 190
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=34.64 E-value=4.4e+02 Score=25.63 Aligned_cols=78 Identities=8% Similarity=0.039 Sum_probs=40.9
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++.-..++ ....+.+..++++.|+....+.+ .. .++...+++ +....++++ .+|...+.
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~-~~---~~~~~~~~~-----------~~~~~~~vd-giii~~~~ 65 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGDT-RS---DPEREQEYL-----------DLLRRKQAD-GIILLDGS 65 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecC-CC---ChHHHHHHH-----------HHHHHcCCC-EEEEecCC
Confidence 4555544343 34557778888889987753332 23 455444444 445556677 44443332
Q ss_pred CC-CchhhhcccCCCCeecc
Q psy246 521 SN-GLGPVISGNTCYPVINC 539 (615)
Q Consensus 521 ~~-~L~gvva~~t~~PVI~v 539 (615)
.. .+.-.+ ....|||.+
T Consensus 66 ~~~~~~~~~--~~~ipvv~~ 83 (267)
T cd06284 66 LPPTALTAL--AKLPPIVQA 83 (267)
T ss_pred CCHHHHHHH--hcCCCEEEE
Confidence 22 211111 236788876
No 191
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.49 E-value=1e+02 Score=32.30 Aligned_cols=66 Identities=6% Similarity=-0.037 Sum_probs=51.3
Q ss_pred HhhccCCCeeEE-EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccC
Q psy246 463 ANHDPQWSDEQI-LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 463 ~l~~~gi~~~~V-~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP 540 (615)
.+++||+....+ ...|-...+|.++.+++ +.++.++++ +|++-...+.-..-.|+..+..+|+.+.
T Consensus 192 l~~~~gl~~~~~~~~~~~~eps~~~l~~l~-----------~~ik~~~v~-~If~e~~~~~~~~~~ia~~~g~~v~~l~ 258 (286)
T cd01019 192 FEKRYGLTQAGVFTIDPEIDPGAKRLAKIR-----------KEIKEKGAT-CVFAEPQFHPKIAETLAEGTGAKVGELD 258 (286)
T ss_pred HHHHcCCceeeeecCCCCCCCCHHHHHHHH-----------HHHHHcCCc-EEEecCCCChHHHHHHHHhcCceEEEec
Confidence 348899987633 22222467999999988 888888998 8889999999999999988888876653
No 192
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.84 E-value=4.4e+02 Score=25.61 Aligned_cols=29 Identities=3% Similarity=0.071 Sum_probs=19.4
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
|+++..+.++ ..+.+.+.+.++++|+.+.
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 33 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQPL 33 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeEE
Confidence 6677766554 2344566777888998775
No 193
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.62 E-value=3.8e+02 Score=26.41 Aligned_cols=80 Identities=6% Similarity=0.034 Sum_probs=44.7
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC-
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG- 519 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG- 519 (615)
|+++..+.++ ..+.+.+...++++|+... +..... .++...+++ +.+...+++-+||...-
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~-~~~~~~---~~~~~~~~i-----------~~~~~~~~dgiii~~~~~ 66 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLV-LCATRN---RPERELTYL-----------RWLDTNHVDGLIFVTNRP 66 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHHHHHHHH-----------HHHHHCCCCEEEEeCCCC
Confidence 6777765444 3577788889999997775 332223 455555555 55556678745554211
Q ss_pred CCCCchhhhcccCCCCeeccC
Q psy246 520 KSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP 540 (615)
....+...+. ...|||-+=
T Consensus 67 ~~~~~~~~~~--~~~pvV~i~ 85 (269)
T cd06293 67 DDGALAKLIN--SYGNIVLVD 85 (269)
T ss_pred CHHHHHHHHh--cCCCEEEEC
Confidence 1122333333 346776653
No 194
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=33.42 E-value=1.3e+02 Score=34.54 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc
Q psy246 422 VKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL 479 (615)
Q Consensus 422 VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR 479 (615)
+..-+.+|.+++ ++.+..+...+.+.. +.....+.+.|++.+||.-..+
T Consensus 301 ~l~~W~~IL~~v------P~S~L~L~~~~~~~~---~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 301 TLDLWARILKAV------PNSRLWLLRFPASGE---ARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp HHHHHHHHHHHS------TTEEEEEEETSTTHH---HHHHHHHHHTTS-GGGEEEEE-
T ss_pred HHHHHHHHHHhC------CCcEEEEeeCCHHHH---HHHHHHHHHcCCChhhEEEcCC
Confidence 333455555444 233444444444332 4566678899999886654444
No 195
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=33.26 E-value=2.1e+02 Score=26.23 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=33.9
Q ss_pred CCCeEEEEeCCCCC-HHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHH
Q psy246 440 TDNLVVLALGSSSD-LPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMK 491 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~ 491 (615)
++.++.|..|...+ .-+++-....++++|+.++ ...+..- +.+++.+.+
T Consensus 29 ~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~i 79 (117)
T PF00763_consen 29 TPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDI---SEEELLELI 79 (117)
T ss_dssp --EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS---SHHHHHHHH
T ss_pred CcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCc---CHHHHHHHH
Confidence 35688888996655 5677888899999999999 5555555 888887766
No 196
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=33.04 E-value=82 Score=32.79 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q psy246 281 ARDEVQIMKRLSLVVFEILEKVWAS 305 (615)
Q Consensus 281 ~~~e~~~~~~~~~~v~~~l~~~~~~ 305 (615)
.....+.|+++|+.+.+.+++.+-.
T Consensus 183 ~~~~~~~l~~~a~~ia~~le~~~~~ 207 (262)
T PF14398_consen 183 AEKIREELEDLALEIAQALEKHFGG 207 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456678999999999999988744
No 197
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=32.88 E-value=1.1e+02 Score=26.07 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHH
Q psy246 450 SSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMK 491 (615)
Q Consensus 450 s~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~ 491 (615)
+.+.=|++.++...|++.|++++ .....|. +++..+++
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~----~~~~~~~~ 45 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDE----PEEAREMV 45 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCc----HHHHHHHH
Confidence 34558999999999999999999 5666654 45665665
No 198
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=32.82 E-value=5.6e+02 Score=26.24 Aligned_cols=111 Identities=10% Similarity=0.088 Sum_probs=57.0
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++...++- .+.+.+...+++.|+... +...+. .++...+++ +.....+++-+|| .
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiIi-~ 124 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGYQLL-IACSDD---QPDNEMRCA-----------EHLLQRQVDALIV-S 124 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEE-EEeCCC---CHHHHHHHH-----------HHHHHcCCCEEEE-c
Confidence 45799998765542 234466677788887664 444454 555544444 3334456773444 3
Q ss_pred cCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA 579 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~ 579 (615)
...... ...+. .....||+-+=.... +.+++.+..|+-..+..+|-.+++
T Consensus 125 ~~~~~~-~~~~~~l~~~~iPvV~v~~~~~-----------~~~~~~V~~d~~~~~~~a~~~L~~ 176 (328)
T PRK11303 125 TSLPPE-HPFYQRLQNDGLPIIALDRALD-----------REHFTSVVSDDQDDAEMLAESLLK 176 (328)
T ss_pred CCCCCC-hHHHHHHHhcCCCEEEECCCCC-----------CCCCCEEEeCCHHHHHHHHHHHHH
Confidence 322111 11221 123578876532111 223556666766655555555554
No 199
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.63 E-value=5e+02 Score=25.68 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=18.2
Q ss_pred eEEEEeCCC-CCH---HHHHHHHHHhhccCCCee
Q psy246 443 LVVLALGSS-SDL---PFANKIDDANHDPQWSDE 472 (615)
Q Consensus 443 ~V~Ii~gs~-SD~---~~~~~~~~~l~~~gi~~~ 472 (615)
+|++++.+. +|- ...+.+...+++.|+...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~ 34 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVE 34 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEE
Confidence 366777655 342 344566677777777765
No 200
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.26 E-value=2.3e+02 Score=29.34 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=54.3
Q ss_pred EEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCc
Q psy246 445 VLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGL 524 (615)
Q Consensus 445 ~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L 524 (615)
.+-+....|.+.++++...+... ..|. .+. +|+++..+. . +++ ++|+.== =
T Consensus 210 ~i~~~~~~D~~~~~~l~~~~~~~----~~i~-~~~---~~~e~~~~i-----------~-----~~~-~vI~~Rl----H 260 (298)
T TIGR03609 210 FLPFQQPQDLPLARALRDQLLGP----AEVL-SPL---DPEELLGLF-----------A-----SAR-LVIGMRL----H 260 (298)
T ss_pred EEeCCcchhHHHHHHHHHhcCCC----cEEE-ecC---CHHHHHHHH-----------h-----hCC-EEEEech----H
Confidence 33445578999998888776431 2344 444 788877665 2 355 6665422 2
Q ss_pred hhhhcccCCCCeeccCCCCCchhhhhhhhcCCC
Q psy246 525 GPVISGNTCYPVINCPPLDSTGRDVWSSLNLPA 557 (615)
Q Consensus 525 ~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~ 557 (615)
+.+.|.....|+|+++-.. =.++++..+.+|.
T Consensus 261 ~~I~A~~~gvP~i~i~y~~-K~~~~~~~~g~~~ 292 (298)
T TIGR03609 261 ALILAAAAGVPFVALSYDP-KVRAFAADAGVPG 292 (298)
T ss_pred HHHHHHHcCCCEEEeeccH-HHHHHHHHhCCCc
Confidence 5566778889999986433 5677888888875
No 201
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=32.26 E-value=3.9e+02 Score=27.23 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=41.6
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEec--ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSA--NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~sa--HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
++++++.+.++ ..+.+.+.+.+++.|+... +.+. +. .+++..+++ +.+..++++ .||..
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~~v~-~~~~~~~~---~~~~~~~~i-----------~~l~~~~vD-giIi~ 64 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGVELK-VLEAGGYP---NLDKQLAQI-----------EQCKSWGAD-AILLG 64 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCCEEE-EEcCCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 36667766555 3334566677778887664 3332 23 344444444 444556787 44444
Q ss_pred cCCCCCchhhhcc-cCCCCeecc
Q psy246 518 AGKSNGLGPVISG-NTCYPVINC 539 (615)
Q Consensus 518 AG~~~~L~gvva~-~t~~PVI~v 539 (615)
+.....+...+.. ....||+-+
T Consensus 65 ~~~~~~~~~~l~~~~~~iPvV~~ 87 (295)
T TIGR02955 65 TVSPEALNHDLAQLTKSIPVFAL 87 (295)
T ss_pred cCChhhhhHHHHHHhcCCCEEEE
Confidence 4333332333321 235787643
No 202
>PRK09492 treR trehalose repressor; Provisional
Probab=32.24 E-value=5.5e+02 Score=26.11 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=65.6
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|+++....++ ...++.+...+++.|+.. -+.+... .++...+++ +....++++-+|+.
T Consensus 62 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiIi~- 125 (315)
T PRK09492 62 DKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDP-IIMESQF---SPEKVNEHL-----------GVLKRRNVDGVILF- 125 (315)
T ss_pred CCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeE-EEEecCC---ChHHHHHHH-----------HHHHhcCCCEEEEe-
Confidence 3579999865433 456777888888888765 4444455 555555554 33444567745543
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC---------CH----H
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR---------DF----F 584 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~---------d~----~ 584 (615)
.........+.. ...||+-+=.. .++++++..|+..++..++-.++... .+ .
T Consensus 126 ~~~~~~~~~l~~--~~~pvv~i~~~-------------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~ 190 (315)
T PRK09492 126 GFTGITEEMLAP--WQDKLVLLARD-------------AKGFSSVCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTT 190 (315)
T ss_pred CCCcccHHHHHh--cCCCEEEEecc-------------CCCCcEEEECcHHHHHHHHHHHHHcCCCeEEEEcCCcccchh
Confidence 211111222211 12344433110 13467777777666555544444332 11 1
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
-..|++.|+..+.+
T Consensus 191 ~~~R~~Gf~~al~~ 204 (315)
T PRK09492 191 GKRRHQAYLAFCKQ 204 (315)
T ss_pred HHHHHHHHHHHHHH
Confidence 24567777766543
No 203
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=32.18 E-value=2.4e+02 Score=28.52 Aligned_cols=134 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhcccCCCCCeEEEEeC---CCCCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHH
Q psy246 424 LNFTWIADTLASVKRPTDNLVVLALG---SSSDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVF 498 (615)
Q Consensus 424 enY~eVA~~L~~~k~~~~~~V~Ii~g---s~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~ 498 (615)
+||.-.......+......+|++++| +.+.....+...+++++.|++.. .+.+... +++...+.+
T Consensus 135 Dn~~~g~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------- 204 (309)
T PRK11041 135 DNLTAAFEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDF---TFEAGAKAL------- 204 (309)
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCC---CHHHHHHHH-------
Q ss_pred HHHHhhhhcCC--CCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC--chhhh-hhhhcCCCCceeeee-cChhhHHH
Q psy246 499 EILVMKSWSSG--KNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDV-WSSLNLPAGIACSTV-TAPSNAAL 572 (615)
Q Consensus 499 ~~l~~~~~~~~--~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l-~S~lqmp~Gv~v~tv-~~~~nAa~ 572 (615)
+.+-.++ .+ +|++..+..+. |++.++-..- +.+|-..+ |.|.. ++..-.|+ +.|| .++.-.|.
T Consensus 205 ----~~~l~~~~~~~-ai~~~~d~~a~--gv~~al~~~g-~~ip~di~vvg~D~~~~~~~~~~~---~~ti~~~~~~~g~ 273 (309)
T PRK11041 205 ----KQLLDLPQPPT-AVFCHSDVMAL--GALSQAKRMG-LRVPQDLSIIGFDDIDLAQYCDPP---LTTVAQPRYEIGR 273 (309)
T ss_pred ----HHHHcCCCCCC-EEEEcCcHHHH--HHHHHHHHcC-CCCCcceEEEEeCCchhhhhcCCC---ceEEecCHHHHHH
Q ss_pred HHHHHH
Q psy246 573 AAAQIL 578 (615)
Q Consensus 573 ~A~~Il 578 (615)
.|+++|
T Consensus 274 ~av~~l 279 (309)
T PRK11041 274 EAMLLL 279 (309)
T ss_pred HHHHHH
No 204
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=31.97 E-value=3.7e+02 Score=29.92 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=25.8
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEe
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILS 476 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~s 476 (615)
++.| ++.|+.++-. ..++...|+.+|+++-.+..
T Consensus 166 ~~~V-niiG~~~~~d-~~el~~lL~~~Gi~v~~~lp 199 (427)
T PRK02842 166 HPSL-VLVGSLADVV-EDQLTLEFKKLGIGVVGFLP 199 (427)
T ss_pred CCcE-EEEEeCCcch-HHHHHHHHHHcCCeeEEEeC
Confidence 4456 7788888754 48999999999999863443
No 205
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=31.95 E-value=48 Score=36.38 Aligned_cols=38 Identities=37% Similarity=0.505 Sum_probs=21.8
Q ss_pred HHHHhhhhcCCCCEEEEEecCCCCCchhhhccc-------------CCCCeeccC
Q psy246 499 EILVMKSWSSGKNVVFIAVAGKSNGLGPVISGN-------------TCYPVINCP 540 (615)
Q Consensus 499 ~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~-------------t~~PVI~vP 540 (615)
|+|++.++ +++ .|||| |-=+.-+|+=|+. +.+|||++|
T Consensus 139 e~l~~aA~--~A~-aIiAv-GtCAs~GgI~AA~pnps~a~~i~ev~~~kpVINiP 189 (355)
T COG1740 139 EILRKAAE--GAS-AIIAV-GTCASWGGIQAAKPNPTGAGPLSEVIKDKPVINIP 189 (355)
T ss_pred HHHHHHhh--cCc-eEEEE-ecccccCCeeccCCCCCCcccceecccCCceeeCC
Confidence 44555554 466 78887 4444455554443 368888765
No 206
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=31.92 E-value=2e+02 Score=26.55 Aligned_cols=98 Identities=6% Similarity=0.027 Sum_probs=52.6
Q ss_pred HHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC----CCchhhhcccCC
Q psy246 458 NKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS----NGLGPVISGNTC 533 (615)
Q Consensus 458 ~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~----~~L~gvva~~t~ 533 (615)
.-+...|+++|+......-+.- .++++.+.+ +.+-++ ++ ++|...|.+ -+.+.+++....
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~D---d~~~i~~~i-----------~~~~~~-~D-lvittGG~g~g~~D~t~~ai~~~g~ 85 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPD---DADSIRAAL-----------IEASRE-AD-LVLTTGGTGVGRRDVTPEALAELGE 85 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCC---CHHHHHHHH-----------HHHHhc-CC-EEEECCCCCCCCCcchHHHHHHhcC
Confidence 3455667888877653333333 556665554 333222 66 777665544 456777776655
Q ss_pred CCee--ccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHH
Q psy246 534 YPVI--NCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAA 575 (615)
Q Consensus 534 ~PVI--~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~ 575 (615)
..+- ++|...+ -..++..+ .|.|+.++-+.-+|+..+.
T Consensus 86 ~~~~g~~~~~~pg-~~~~~~~~---~~~~i~~LPG~p~a~~~~~ 125 (133)
T cd00758 86 REAHGKGVALAPG-SRTAFGII---GKVLIINLPGSPKSALTTF 125 (133)
T ss_pred EEeccCcccccCC-CceEEEEE---CCEEEEECCCCHHHHHHHH
Confidence 5555 5665443 11112221 3567777755556665544
No 207
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.33 E-value=1.5e+02 Score=30.65 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred Ce-EEEEeCCCCCHHHHHH---HHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 442 NL-VVLALGSSSDLPFANK---IDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 442 ~~-V~Ii~gs~SD~~~~~~---~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
.+ |+++.|..+.....+. -.+++++.|++.. .|....- +.+.-.+.+ -+.|++. -.++ .||
T Consensus 119 ~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~---~~~~g~~~~------~~ll~~~---p~id-ai~ 185 (279)
T PF00532_consen 119 RRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDF---DYESGYEAA------RELLESH---PDID-AIF 185 (279)
T ss_dssp CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSS---SHHHHHHHH------HHHHHTS---TT-S-EEE
T ss_pred CCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCC---CHHHHHHHH------HHHHhhC---CCCE-EEE
Confidence 35 9999998887654443 3689999999776 5655444 444433332 2223222 1245 788
Q ss_pred EecCCCCCchhhhcccCCCCeeccCCCC-----C--chhhh----hhhhcCCCCceeeeecCh-hhHHHHHHHHH
Q psy246 516 AVAGKSNGLGPVISGNTCYPVINCPPLD-----S--TGRDV----WSSLNLPAGIACSTVTAP-SNAALAAAQIL 578 (615)
Q Consensus 516 a~AG~~~~L~gvva~~t~~PVI~vP~~~-----~--g~~~l----~S~lqmp~Gv~v~tv~~~-~nAa~~A~~Il 578 (615)
|...+. +++.+-+....- =+.+|-.. + |.|.+ +|++..|+ .+|+..+ ..-+.-|+++|
T Consensus 186 ~~nd~~-A~ga~~~l~~~g-r~~ip~di~~~~~~v~g~d~~~~~~~~~~~~~~---lt~i~~~~~~~G~~a~~~l 255 (279)
T PF00532_consen 186 CANDMM-AIGAIRALRERG-RLKIPEDIVSGFDSVVGFDNLEDPDFSTLEQPP---LTTIQQPAYEMGRQAAEML 255 (279)
T ss_dssp ESSHHH-HHHHHHHHHHTT--TCTTTEEEECSCCCGGHHHCCTCCT-SCCSCC---EEECHHHHHHHHHHHHHHH
T ss_pred EeCHHH-HHHHHHHHHHcC-CcccChhheeeeccchhhccccccccccccCCC---eeEEecCCCchHHHHHHHH
Confidence 776552 333322222211 02233222 3 78876 44444444 6677533 45555555544
No 208
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=31.12 E-value=5.3e+02 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=21.3
Q ss_pred CeEEEEeCC-------CCC---HHHHHHHHHHhhccCCCee
Q psy246 442 NLVVLALGS-------SSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 442 ~~V~Ii~gs-------~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
..|+|++-+ .+| ....+.+...++++|+...
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 44 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLL 44 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEE
Confidence 468888864 222 2345668888899998875
No 209
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.84 E-value=5.1e+02 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=19.7
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
|+|+..+.++ ....+.+.+.++++|+.+.
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 33 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLL 33 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEE
Confidence 6677755555 3455677788888888775
No 210
>PRK00861 putative lipid kinase; Reviewed
Probab=30.43 E-value=1.1e+02 Score=32.12 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh
Q psy246 449 GSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV 527 (615)
Q Consensus 449 gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv 527 (615)
|+.+.....+++...|+. +++++ .+.+... +..+++ +++...+.+ ++| ++|+.+.+..|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~~------~a~~~a-----------~~~~~~~~d-~vv-~~GGDGTl~ev 73 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPEI------GADQLA-----------QEAIERGAE-LII-ASGGDGTLSAV 73 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCCC------CHHHHH-----------HHHHhcCCC-EEE-EECChHHHHHH
Confidence 444445566788888876 46666 4444332 333444 444445676 544 57889999999
Q ss_pred hcccCCC-Ceec-cCC
Q psy246 528 ISGNTCY-PVIN-CPP 541 (615)
Q Consensus 528 va~~t~~-PVI~-vP~ 541 (615)
+.++... |.+| +|.
T Consensus 74 v~~l~~~~~~lgviP~ 89 (300)
T PRK00861 74 AGALIGTDIPLGIIPR 89 (300)
T ss_pred HHHHhcCCCcEEEEcC
Confidence 9887532 3344 444
No 211
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.33 E-value=5.8e+02 Score=25.72 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=46.0
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|+++..+.++ ..+.+.+..++++.|+... +..... .+++..+.+ +.+-..+++ .||..+.-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~~~~~~vd-giii~~~~ 65 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVI-VQNANG---DPAKQISQI-----------ENMIAKGVD-VLVIAPVD 65 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEE-EECCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEecCC
Confidence 6777766555 3344677778888998874 444444 566655555 444455777 55555433
Q ss_pred CCCchhhhc--ccCCCCeecc
Q psy246 521 SNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 521 ~~~L~gvva--~~t~~PVI~v 539 (615)
.......+. ..-..|||.+
T Consensus 66 ~~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 66 GEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred hhhHHHHHHHHHHCCCCEEEE
Confidence 322333322 2346788765
No 212
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=30.25 E-value=67 Score=34.42 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred eEEEEeCCCCC-----HHHHHHHHHHhhccCCCee--EEEec-----------------------------------ccC
Q psy246 443 LVVLALGSSSD-----LPFANKIDDANHDPQWSDE--QILSA-----------------------------------NLD 480 (615)
Q Consensus 443 ~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~--~V~sa-----------------------------------HR~ 480 (615)
+|+|++||.|. +.-++.+..+|++.|.... .|..- +.
T Consensus 5 ~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T PRK14568 5 KVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLVLEQ- 83 (343)
T ss_pred EEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccccCc-
Q ss_pred CcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec---CCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcC
Q psy246 481 NVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA---GKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNL 555 (615)
Q Consensus 481 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A---G~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqm 555 (615)
...+..+++.||++.- |-.+++.+++- ...+|++|+++..+ .+|-.++-.-+
T Consensus 84 ----------------------~~~~~~~~d~vf~~lhG~~gedg~iq~lle-~~gipy~G~~~~asai~~DK~~~k~~l 140 (343)
T PRK14568 84 ----------------------GEYETIRLDVVFPVLHGKLGEDGAIQGLLE-LSGIPYVGCDIQSSALCMDKSLAYIVA 140 (343)
T ss_pred ----------------------cccccccCCEEEEcCCCCCCCchHHHHHHH-HcCCCccCCCHHHHHHHhCHHHHHHHH
Q ss_pred -CCCceee
Q psy246 556 -PAGIACS 562 (615)
Q Consensus 556 -p~Gv~v~ 562 (615)
-.|||+.
T Consensus 141 ~~~GIp~p 148 (343)
T PRK14568 141 KNAGIATP 148 (343)
T ss_pred HHcCcCcC
No 213
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=30.00 E-value=1.1e+02 Score=31.94 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=33.3
Q ss_pred eEEEE---eCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHH
Q psy246 443 LVVLA---LGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMK 491 (615)
Q Consensus 443 ~V~Ii---~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~ 491 (615)
+|+-| .++..+-+.+++.+++|.++|+....+-..+- .++.++..+
T Consensus 34 ~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~---~~~~Ie~~l 82 (224)
T COG3340 34 TIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP---PLAAIENKL 82 (224)
T ss_pred eEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC---CHHHHHHhh
Confidence 45544 56677888999999999999998765444444 666666654
No 214
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=29.56 E-value=97 Score=32.12 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=59.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc------CCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL------DNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR------~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
.+|+|++== .-++-+.....+++.|+++..+.+.-. -+|+|+.+.+++ +.....+++-|||
T Consensus 121 ~RIalvTPY--~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~-----------~~~~~~~aDAifi 187 (239)
T TIGR02990 121 RRISLLTPY--TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAA-----------LAAFDPDADALFL 187 (239)
T ss_pred CEEEEECCC--cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHH-----------HHhcCCCCCEEEE
Confidence 478888754 445566778888999988753322111 246899998888 5555567888999
Q ss_pred EecCCCCCchhhhcc---cCCCCeeccCCCCCchhhhhhhhcC
Q psy246 516 AVAGKSNGLGPVISG---NTCYPVINCPPLDSTGRDVWSSLNL 555 (615)
Q Consensus 516 a~AG~~~~L~gvva~---~t~~PVI~vP~~~~g~~~l~S~lqm 555 (615)
.+.++. -..+|.- ...+||| +|-...+|.++++
T Consensus 188 sCTnLr--t~~vi~~lE~~lGkPVl-----sSNqat~W~~Lr~ 223 (239)
T TIGR02990 188 SCTALR--AATCAQRIEQAIGKPVV-----TSNQATAWRCLRL 223 (239)
T ss_pred eCCCch--hHHHHHHHHHHHCCCEE-----EHHHHHHHHHHHH
Confidence 998872 2233333 3345554 4444667777765
No 215
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.10 E-value=2.3e+02 Score=29.73 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=58.5
Q ss_pred CCCCCeEEEEeCCCCCH----------------HHHHHHHHHhhccCCCeeE-----EEecccCCcchHHHHHHHHhhHH
Q psy246 438 RPTDNLVVLALGSSSDL----------------PFANKIDDANHDPQWSDEQ-----ILSANLDNVARDEVQIMKRLSLV 496 (615)
Q Consensus 438 ~~~~~~V~Ii~gs~SD~----------------~~~~~~~~~l~~~gi~~~~-----V~saHR~~~~p~~~~~~~~~~~~ 496 (615)
.+.+..|||||-|--=| ..+.++...+.++||++-. .-.-.| .++|+..+..+...
T Consensus 6 ~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R---~~~EV~~Lm~L~~~ 82 (241)
T PRK14842 6 STIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKR---PITEIRSIFGLLVE 82 (241)
T ss_pred CCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHHHHHHHHHH
Confidence 34456899999884433 3456777778899999862 333489 99999998877666
Q ss_pred HHHHHHhhhhcCCCCEEEEEecCCCCCchhhh
Q psy246 497 VFEILVMKSWSSGKNVVFIAVAGKSNGLGPVI 528 (615)
Q Consensus 497 ~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvv 528 (615)
.++.+.+.+..+|++ |-+-|.-..||.-+
T Consensus 83 ~l~~~~~~~~~~~ir---v~~iG~~~~Lp~~l 111 (241)
T PRK14842 83 FIETRLDTIHARGIR---IHHSGSRKKLTRTV 111 (241)
T ss_pred HHHHHHHHHHHCCCE---EEEEeChhhCCHHH
Confidence 666655555566654 44556767788765
No 216
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=28.88 E-value=3.1e+02 Score=26.68 Aligned_cols=32 Identities=6% Similarity=-0.134 Sum_probs=22.8
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
..+|++++|+..+ ....+...+++++.|++..
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~ 154 (268)
T cd06271 120 HRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLD 154 (268)
T ss_pred CCcEEEecCccccchHHHHHHHHHHHHHHhCCCCC
Confidence 4579999887554 3445667788888888753
No 217
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=28.84 E-value=6.6e+02 Score=25.87 Aligned_cols=82 Identities=9% Similarity=0.067 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|+++..+.++ ..+.+.+.+.+++.|... -+...+. +++...+++ +.+..++++ .||..
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi~ 127 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMV-FLLQGGK---DGEQLAQRF-----------STLLNQGVD-GVVIA 127 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEE-EEEeCCC---CHHHHHHHH-----------HHHHhCCCC-EEEEe
Confidence 4578999876554 344556777888888654 4444555 666555555 444445677 45544
Q ss_pred cCCCCCchhhhc--ccCCCCeecc
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINC 539 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~v 539 (615)
.... .....+. .....|||-+
T Consensus 128 ~~~~-~~~~~~~~l~~~~iPvV~~ 150 (342)
T PRK10014 128 GAAG-SSDDLREMAEEKGIPVVFA 150 (342)
T ss_pred CCCC-CcHHHHHHHhhcCCCEEEE
Confidence 4332 2223332 2345788876
No 218
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=28.72 E-value=4.1e+02 Score=27.26 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=58.7
Q ss_pred CCeEEEEeCCCCC----HHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 441 DNLVVLALGSSSD----LPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 441 ~~~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
..+|+++.|..++ ....+.-.+++++.|++.. .+...+. +.+.-.+.+ + +..+ .+.+ +|
T Consensus 176 ~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~-------~---~ll~-~~p~-ai 240 (329)
T TIGR01481 176 HKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKY---SYDAGYKAF-------A---ELKG-SLPT-AV 240 (329)
T ss_pred CCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCC---ChHHHHHHH-------H---HHhC-CCCC-EE
Confidence 3479999886543 2344556788889999876 3444433 443333222 1 1111 2344 77
Q ss_pred EEecCCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcCCCCceeeeec-ChhhHHHHHHHHH
Q psy246 515 IAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNLPAGIACSTVT-APSNAALAAAQIL 578 (615)
Q Consensus 515 Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqmp~Gv~v~tv~-~~~nAa~~A~~Il 578 (615)
++.... -+ -|++.++...- +.||-..+ |+|..--.-.+.|.+ .||. +...-|..|+++|
T Consensus 241 ~~~~d~-~A-~g~~~al~~~g-~~vP~dvsvvgfd~~~~~~~~~p~l--ttv~~~~~~~g~~Av~~L 302 (329)
T TIGR01481 241 FVASDE-MA-AGILNAAMDAG-IKVPEDLEVITSNNTRLTEMVRPQL--STIIQPLYDIGAVAMRLL 302 (329)
T ss_pred EEcCcH-HH-HHHHHHHHHcC-CCCCCceEEEeeCCchHHhhcCCCC--cEEecCHHHHHHHHHHHH
Confidence 775443 12 25555554432 34555444 666542222233334 5553 3444455555544
No 219
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=28.19 E-value=7e+02 Score=25.96 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=54.9
Q ss_pred cccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHH
Q psy246 417 EGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLV 496 (615)
Q Consensus 417 ~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~ 496 (615)
.|+..+.+++..+. . +..+.|+.|+..+-...+++...++.++....+|.-... .++.+++.++.
T Consensus 214 Kg~~~li~a~~~l~-------~--~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~----- 278 (388)
T TIGR02149 214 KGVPHLLDAVHYIP-------K--DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINK-MLPKEELVELL----- 278 (388)
T ss_pred cCHHHHHHHHHHHh-------h--cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecC-CCCHHHHHHHH-----
Confidence 45555665554431 1 223444445555555667777777777765443332211 23566776665
Q ss_pred HHHHHHhhhhcCCCCEEEEEecCCCC-CchhhhcccCCCCeeccCCCCCchhhh
Q psy246 497 VFEILVMKSWSSGKNVVFIAVAGKSN-GLGPVISGNTCYPVINCPPLDSTGRDV 549 (615)
Q Consensus 497 ~~~~l~~~~~~~~~~~V~Ia~AG~~~-~L~gvva~~t~~PVI~vP~~~~g~~~l 549 (615)
. .++ |++.-.-.++ ++..+=|....+|||+... +|...+
T Consensus 279 ------~-----~aD-v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~--~~~~e~ 318 (388)
T TIGR02149 279 ------S-----NAE-VFVCPSIYEPLGIVNLEAMACGTPVVASAT--GGIPEV 318 (388)
T ss_pred ------H-----hCC-EEEeCCccCCCChHHHHHHHcCCCEEEeCC--CCHHHH
Confidence 2 355 7765442222 3333445566789998553 344443
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=27.73 E-value=5.2e+02 Score=26.18 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=55.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc-CCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL-DNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR-~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+..+.|+-+...-.+.-.+....+..+|+|+- .-+.+ |.+..+++.+.. +.+.+....-|+..+=+++..
T Consensus 111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~i--vvvNK~D~~~~~~~~~~~-------~~l~~~L~~~g~~~~p~~~~~ 181 (224)
T cd04165 111 DYAMLVVAANAGIIGMTKEHLGLALALNIPVF--VVVTKIDLAPANILQETL-------KDLKRILKVPGVRKLPVPVKS 181 (224)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE--EEEECccccCHHHHHHHH-------HHHHHHhcCCCccccceeeec
Confidence 33455554444445556667777888999864 22333 334444444433 112222222233222223333
Q ss_pred CCCCchhhh--cccCCCCeeccCCCCC-chhhhhhhhcC-CCC
Q psy246 520 KSNGLGPVI--SGNTCYPVINCPPLDS-TGRDVWSSLNL-PAG 558 (615)
Q Consensus 520 ~~~~L~gvv--a~~t~~PVI~vP~~~~-g~~~l~S~lqm-p~G 558 (615)
.+..+...- ......||+-|--.++ |++.|+..+++ |++
T Consensus 182 ~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp~~ 224 (224)
T cd04165 182 DDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLPLR 224 (224)
T ss_pred ccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcCCC
Confidence 333322211 1233558887766666 99999999965 763
No 221
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.53 E-value=4.3e+02 Score=26.02 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=20.6
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccC-CCee
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQ-WSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~g-i~~~ 472 (615)
..+|+++.|.... ....+...+++.+.| ++..
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~ 160 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIV 160 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEE
Confidence 3479998875322 345566777887777 7654
No 222
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=26.90 E-value=1.6e+02 Score=31.96 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=26.7
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhhhc-ccCCCCeeccCCCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPVIS-GNTCYPVINCPPLD 543 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gvva-~~t~~PVI~vP~~~ 543 (615)
+..++.+++ .+|.+.|- +.+.+.-. +...+||||+|-..
T Consensus 86 ~~l~~~~Id-~Li~IGGd-gs~~~a~~L~e~~i~vigiPkTI 125 (317)
T cd00763 86 EQLKKHGID-ALVVIGGD-GSYMGAMRLTEHGFPCVGLPGTI 125 (317)
T ss_pred HHHHHcCCC-EEEEECCc-hHHHHHHHHHHcCCCEEEecccc
Confidence 667778998 88888774 44444322 23369999999654
No 223
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.75 E-value=4e+02 Score=28.03 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCeEEEEeCCCCC----------------HHHHHHHHHHhhccCCCee--EEE---ecccCCcchHHHHHHHHhhHHHHH
Q psy246 441 DNLVVLALGSSSD----------------LPFANKIDDANHDPQWSDE--QIL---SANLDNVARDEVQIMKRLSLVVFE 499 (615)
Q Consensus 441 ~~~V~Ii~gs~SD----------------~~~~~~~~~~l~~~gi~~~--~V~---saHR~~~~p~~~~~~~~~~~~~~~ 499 (615)
+..|||||.+..- ...+.++...+.++||++- -.- ...| +++|+..+..+..-.|+
T Consensus 23 P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R---~~~Ev~~Lm~l~~~~l~ 99 (251)
T PRK14830 23 PKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKR---PKDEVKFLMNLPVEFLD 99 (251)
T ss_pred CCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCC---CHHHHHHHHHHHHHHHH
Confidence 4589999988743 3345566667788999975 223 3357 99999888765555555
Q ss_pred HHHhhhhcCCCCEEEEEecCCCCCchhhh
Q psy246 500 ILVMKSWSSGKNVVFIAVAGKSNGLGPVI 528 (615)
Q Consensus 500 ~l~~~~~~~~~~~V~Ia~AG~~~~L~gvv 528 (615)
-+-..+...+ |=|-+-|.-..||.-+
T Consensus 100 ~~~~~~~~~~---iri~viG~~~~Lp~~~ 125 (251)
T PRK14830 100 KFVPELIENN---VKVNVIGDTDRLPEHT 125 (251)
T ss_pred HHHHHHHHcC---CEEEEEcChhhCCHHH
Confidence 5444444454 5567777878898755
No 224
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=26.11 E-value=5e+02 Score=24.69 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=15.2
Q ss_pred HHHHhhhhcCCCCEEEEEecCCCCCchhh
Q psy246 499 EILVMKSWSSGKNVVFIAVAGKSNGLGPV 527 (615)
Q Consensus 499 ~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv 527 (615)
+.|.+.++....+.|+.|+.|.++-.|.+
T Consensus 80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~ 108 (129)
T PF02670_consen 80 EGLEELAEEPEVDIVVNAIVGFAGLKPTL 108 (129)
T ss_dssp HHHHHHHTHTT-SEEEE--SSGGGHHHHH
T ss_pred HHHHHHhcCCCCCEEEEeCcccchHHHHH
Confidence 34445555566787788888875444443
No 225
>KOG4435|consensus
Probab=26.10 E-value=1.9e+02 Score=32.81 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=62.5
Q ss_pred chhhhhHHHHHHHhhcccCC---CCCeEEEEeCC------CCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHH
Q psy246 420 NQVKLNFTWIADTLASVKRP---TDNLVVLALGS------SSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIM 490 (615)
Q Consensus 420 ~~VkenY~eVA~~L~~~k~~---~~~~V~Ii~gs------~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~ 490 (615)
+++...|+.+++....---| ++.+|-|+|-- .-|.-. +-|.-+|+--|+.++-|---|- .....+
T Consensus 36 ~~~rre~a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~-kna~P~lHLaG~~V~Ivktd~~-----gqak~l 109 (535)
T KOG4435|consen 36 QGIRREYAKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFN-KNALPLLHLAGVQVDIVKTDNQ-----GQAKAL 109 (535)
T ss_pred HHHHHHHHHHHHHhccccCCcccccceEEEEechhhccchhhhhhh-cccchheeeccceEEEEecCcH-----HHHHHH
Confidence 45667888888876432122 34578888852 122211 3344444555555543333332 222233
Q ss_pred HHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCC-----CCeeccCCCCCchhhhhhhhcCCC
Q psy246 491 KRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTC-----YPVINCPPLDSTGRDVWSSLNLPA 557 (615)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~-----~PVI~vP~~~~g~~~l~S~lqmp~ 557 (615)
+ |++ +... + +|.|||+.+.++-||.|.-- +||=-.| +|.+.||+.-..|+
T Consensus 110 ~-------e~~----~t~~-D--ii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P---~G~~~l~~~s~l~~ 164 (535)
T KOG4435|consen 110 A-------EAV----DTQE-D--IIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYP---GGYDNLWLKSMLPS 164 (535)
T ss_pred H-------HHh----ccCC-C--eEEEecCCCcHHHhhHHHHhcccccCceeecc---CccchHhhhhhchh
Confidence 3 333 3221 4 67788999999999999643 4554444 26666666544454
No 226
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.05 E-value=3.7e+02 Score=27.29 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=60.9
Q ss_pred ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhh--cccCCCCeeccCCCCCchhhhhhhh
Q psy246 476 SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVI--SGNTCYPVINCPPLDSTGRDVWSSL 553 (615)
Q Consensus 476 saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvv--a~~t~~PVI~vP~~~~g~~~l~S~l 553 (615)
+.|--..+|..+..+. .++.||..++|++.-+..++ +.+....||.... |++.
T Consensus 31 dpH~~~~~p~d~~~l~-----------------~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~---~~~~----- 85 (256)
T PF01297_consen 31 DPHDYEPTPSDIKKLQ-----------------KADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSE---GIDL----- 85 (256)
T ss_dssp CTTT----HHHHHHHH-----------------HSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTT---TS-G-----
T ss_pred ccccccCChHHHHHHH-----------------hCCEEEEeCCccchhhhhhhhcccccccceEEeec---cccc-----
Confidence 4677777888887775 25645555689999999999 4555666664332 2210
Q ss_pred cCCCCceeeeecChhhHHHHH---HHHHccCCHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy246 554 NLPAGIACSTVTAPSNAALAA---AQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQEN 611 (615)
Q Consensus 554 qmp~Gv~v~tv~~~~nAa~~A---~~Il~~~d~~l~~kl~~~~~~~~~~~~~~d~~l~~~~ 611 (615)
.-...=|= .-.++.|+..+| ++.|...||.-++..+..-.+...++.+.++++++..
T Consensus 86 ~~~~~npH-~Wldp~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 145 (256)
T PF01297_consen 86 DHHGHNPH-VWLDPENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKL 145 (256)
T ss_dssp STTCBEST-GGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCc-hHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000000 013677777666 4556667777666555555555666666666665543
No 227
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.99 E-value=3.4e+02 Score=30.54 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=35.8
Q ss_pred ccccccccccccccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCe
Q psy246 406 QVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSD 471 (615)
Q Consensus 406 q~~R~~~~~~~~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~ 471 (615)
..||+.+-+.-.+++++.+. ++.+.....+..++|+|++.|-. .+.-+.+.+++.|+..
T Consensus 264 a~~~~~Gv~~~~~~~el~~~----~~~l~~~~~~~g~rvaivs~sGG---~g~l~aD~~~~~Gl~l 322 (447)
T TIGR02717 264 AAFKQAGVIRADSIEELFDL----ARLLSNQPLPKGNRVAIITNAGG---PGVIATDACEENGLEL 322 (447)
T ss_pred HHHHHCCeEEeCCHHHHHHH----HHHHhcCCCCCCCeEEEEECCch---HHHHHHHHHHHcCCCc
Confidence 45666655555555544433 44455445556779999998853 4455666667766653
No 228
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=25.87 E-value=4.5e+02 Score=25.61 Aligned_cols=118 Identities=10% Similarity=0.049 Sum_probs=57.1
Q ss_pred CCeEEEEeCCCCC----HHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 441 DNLVVLALGSSSD----LPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 441 ~~~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
..+|+++.|+..| ....+...+++++.|++.. .+...+. +++...+.+ ...| +....+ +|
T Consensus 116 ~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~l----~~~~~~-ai 181 (268)
T cd06298 116 HKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDY---TYESGYELA------EELL----EDGKPT-AA 181 (268)
T ss_pred CceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCC---ChhHHHHHH------HHHh----cCCCCC-EE
Confidence 4589999877652 2344556778888888764 3433444 444433222 1222 212255 77
Q ss_pred EEecCCCCCchhhhcccCCCCeeccCCCCC--chhhh-hhhhcCCCCceeeeec-ChhhHHHHHHHHH
Q psy246 515 IAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDV-WSSLNLPAGIACSTVT-APSNAALAAAQIL 578 (615)
Q Consensus 515 Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l-~S~lqmp~Gv~v~tv~-~~~nAa~~A~~Il 578 (615)
++..... ..|++.++-.... .+|-..+ |.|.. ++.+ +.+. +.||. +...-|..|+++|
T Consensus 182 ~~~~d~~--a~~~~~~l~~~g~-~vp~di~vvg~d~~~~~~~-~~~~--lttv~~~~~~~g~~a~~~l 243 (268)
T cd06298 182 FVTDDEL--AIGILNAAQDAGL-KVPEDFEIIGFNNTKLASM-VRPQ--LTSVTQPLYDIGAVAMRLL 243 (268)
T ss_pred EEcCcHH--HHHHHHHHHHcCC-CCccceEEEeeccHHHHhh-cCCC--cceEcCCHHHHHHHHHHHH
Confidence 7643332 3356655443322 3454444 55443 3333 2233 45553 3344444444444
No 229
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=25.79 E-value=6.6e+02 Score=24.84 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=38.3
Q ss_pred EEEEeCCCC--CHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 444 VVLALGSSS--DLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 444 V~Ii~gs~S--D~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
|+++....+ -..++..+.+.+.+.|+...-+.+... .++...+++ +....++++-+|+ .....
T Consensus 2 i~~v~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~i-----------~~l~~~~vDgiIi-~~~~~ 66 (271)
T cd06314 2 IAVVTNGASPFWKIAEAGVKAAGKELGVDVEFVVPQQG---TVNAQLRML-----------EDLIAEGVDGIAI-SPIDP 66 (271)
T ss_pred eEEEcCCCcHHHHHHHHHHHHHHHHcCCeEEEeCCCCC---CHHHHHHHH-----------HHHHhcCCCEEEE-ecCCh
Confidence 556653322 123445566677778876642222333 444444454 4444567773444 43322
Q ss_pred CCchhhhcc-cCCCCeecc
Q psy246 522 NGLGPVISG-NTCYPVINC 539 (615)
Q Consensus 522 ~~L~gvva~-~t~~PVI~v 539 (615)
......+.- ....|||.+
T Consensus 67 ~~~~~~l~~~~~~ipvV~~ 85 (271)
T cd06314 67 KAVIPALNKAAAGIKLITT 85 (271)
T ss_pred hHhHHHHHHHhcCCCEEEe
Confidence 222222221 116677776
No 230
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=25.34 E-value=2.9e+02 Score=27.07 Aligned_cols=105 Identities=17% Similarity=0.086 Sum_probs=61.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHh----hccCCC-eeEEE--------ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC
Q psy246 443 LVVLALGSSSDLPFANKIDDAN----HDPQWS-DEQIL--------SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG 509 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l----~~~gi~-~~~V~--------saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~ 509 (615)
+|.+|+||.+.-.+.......+ +..+.. ...+- -.+. +=.|+.+..+. +... .
T Consensus 2 kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~-~~~p~~v~~~~-----------~~i~--~ 67 (184)
T COG0431 2 KILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEA-DGLPPAVQALR-----------EAIA--A 67 (184)
T ss_pred eEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhh-ccCCHHHHHHH-----------HHHH--h
Confidence 6999999999987766655554 444422 11111 0110 11677777776 5444 3
Q ss_pred CCEEEEEecCCCCCchhhh---------cccCCCCeeccCCCCC---------chhhhhhhhcC---CCCcee
Q psy246 510 KNVVFIAVAGKSNGLGPVI---------SGNTCYPVINCPPLDS---------TGRDVWSSLNL---PAGIAC 561 (615)
Q Consensus 510 ~~~V~Ia~AG~~~~L~gvv---------a~~t~~PVI~vP~~~~---------g~~~l~S~lqm---p~Gv~v 561 (615)
++.+||+.-=-.++.||++ ......||.-+=++.+ -+..+++.++| |.||+.
T Consensus 68 aD~li~~tPeYn~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~~~~~a~~~Lr~vl~~~~~~~~~~~v~~ 140 (184)
T COG0431 68 ADGLIIATPEYNGSYPGALKNAIDWLSREALGGKPVLLLGTSGGGAGGLRAQNQLRPVLSFLGARVIPAGVFA 140 (184)
T ss_pred CCEEEEECCccCCCCCHHHHHHHHhCCHhHhCCCcEEEEecCCCchhHHHHHHHHHHHHHhcCceecccchhh
Confidence 5557777766677777765 2456788666655554 23566666665 555333
No 231
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.20 E-value=3.5e+02 Score=28.33 Aligned_cols=70 Identities=11% Similarity=-0.005 Sum_probs=50.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC
Q psy246 444 VVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN 522 (615)
Q Consensus 444 V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~ 522 (615)
+.-+.-+.||++.+.++.+..++.|..+. .+.-+.-.+.+++.+.+++ +.+.+.|++ .|.++-..+
T Consensus 107 ~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~Ga~--~i~l~DT~G 173 (275)
T cd07937 107 IFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLA-----------KELEDMGAD--SICIKDMAG 173 (275)
T ss_pred EEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHH-----------HHHHHcCCC--EEEEcCCCC
Confidence 44456688899999999999999998776 5532221235789998888 777778887 567777766
Q ss_pred Cchh
Q psy246 523 GLGP 526 (615)
Q Consensus 523 ~L~g 526 (615)
.+.+
T Consensus 174 ~~~P 177 (275)
T cd07937 174 LLTP 177 (275)
T ss_pred CCCH
Confidence 6553
No 232
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=24.94 E-value=97 Score=37.28 Aligned_cols=125 Identities=13% Similarity=-0.010 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhcccCCCCCeEEEEeCCCCC-----HHHHHHHHHHhhccCCCee--EEEec--ccCCcchHHHHHHHH
Q psy246 422 VKLNFTWIADTLASVKRPTDNLVVLALGSSSD-----LPFANKIDDANHDPQWSDE--QILSA--NLDNVARDEVQIMKR 492 (615)
Q Consensus 422 VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~--~V~sa--HR~~~~p~~~~~~~~ 492 (615)
+...+.-+++.+..+.++ .-+|+|++||.|- +.-++.+..+|+..|..+. .|... +. +++......
T Consensus 433 ~~GSly~i~~~~~~~~~~-~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~---~~~~~~~~~- 507 (809)
T PRK14573 433 GAGNIYTLGEALKDFEPK-KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWE---TVSSLETAI- 507 (809)
T ss_pred CCCCHHHHHHHHHhcCCC-CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEE---ecccccccc-
Q ss_pred hhHHHHHHHHh------------hhhcCCCCEEEEEecCC---CCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcC
Q psy246 493 LSLVVFEILVM------------KSWSSGKNVVFIAVAGK---SNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNL 555 (615)
Q Consensus 493 ~~~~~~~~l~~------------~~~~~~~~~V~Ia~AG~---~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqm 555 (615)
. .-+..+++.||++.=|. .++++|++--+- +|++|+++.++ ++|-..+=.=+
T Consensus 508 ----------~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~~le~~g-ipy~Gs~~~asal~~DK~~~K~~l 576 (809)
T PRK14573 508 ----------EEDSGKSVLSSEIAQALAKVDVVLPILHGPFGEDGTMQGFLEIIG-KPYTGPSLAFSAIAMDKVLTKRFA 576 (809)
T ss_pred ----------cccccccccchhhhhccccCCEEEEcCCCCCCCChHHHHHHHHcC-CCeeCCCHHHHHHHcCHHHHHHHH
Q ss_pred -CCCceee
Q psy246 556 -PAGIACS 562 (615)
Q Consensus 556 -p~Gv~v~ 562 (615)
-.|||++
T Consensus 577 ~~~GIpt~ 584 (809)
T PRK14573 577 SDVGVPVV 584 (809)
T ss_pred HHCCCCCC
No 233
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=24.88 E-value=2.6e+02 Score=29.69 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=54.0
Q ss_pred hhhcccCCCCeeccCCCCC----------------chhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCCHHHH-HH
Q psy246 526 PVISGNTCYPVINCPPLDS----------------TGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRDFFIW-SK 588 (615)
Q Consensus 526 gvva~~t~~PVI~vP~~~~----------------g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d~~l~-~k 588 (615)
++.++...-++|-||.... -..+....++.-..+||++|+- ....+-+.++..+.+++-| .|
T Consensus 148 ~~~~~~~~~~~v~V~~~~~rskK~nrr~~~e~e~~A~~~~~~l~~~~~~~PIlaID~-~devl~~I~~tsl~d~d~W~Rk 226 (273)
T PF12745_consen 148 PLISSDINQKVVVVPNPATRSKKNNRRYKWEQEDRAQNASANLVQSLSDGPILAIDT-RDEVLDMISITSLSDPDEWNRK 226 (273)
T ss_pred cccccCCCcceeEeecccccccccccceeeeeHHHHHHHHHHHHHhccCCcEEEEEC-cHHHHHHHHhcccCCHHHHHHH
Confidence 3344456889999998652 2344455556666679999997 7778888899999999999 65
Q ss_pred H--------HHHHHHHHHHHH
Q psy246 589 L--------RMYQTKLYIALN 601 (615)
Q Consensus 589 l--------~~~~~~~~~~~~ 601 (615)
+ |.|-.+.+..+.
T Consensus 227 v~~~~~~~~k~Y~~~I~~~L~ 247 (273)
T PF12745_consen 227 VIQSVPSTPKSYLQNIYDELS 247 (273)
T ss_pred HHhhcCccHHHHHHHHHHHHH
Confidence 5 566666666665
No 234
>PRK12757 cell division protein FtsN; Provisional
Probab=24.72 E-value=1.3e+02 Score=32.01 Aligned_cols=68 Identities=12% Similarity=-0.048 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCcch----HHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNVAR----DEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p----~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
+...|=+||-++..-|+....-|...|++.. .--+.||.+|+| ++..++. +.....|+..+||
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~-----------~rLk~~G~~~~ii 251 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKML-----------QRLKGAGHSGCIP 251 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHH-----------HHHHHcCCCCeEE
Confidence 4577889999999999999999998898764 222367766654 4555554 5556677766888
Q ss_pred EecCC
Q psy246 516 AVAGK 520 (615)
Q Consensus 516 a~AG~ 520 (615)
..+|+
T Consensus 252 va~gg 256 (256)
T PRK12757 252 LAAGG 256 (256)
T ss_pred eccCC
Confidence 77764
No 235
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.51 E-value=3.4e+02 Score=22.38 Aligned_cols=59 Identities=17% Similarity=0.056 Sum_probs=41.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.|.|+.-+..+.+.+.++...|..-|+.++.-.+ .+ ++..-.+++ +..|++ .+|.+...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~---~~~~~~~~a--------------~~~g~~-~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NE---KLGKKIREA--------------QLQKIP-YILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CC---CHHHHHHHH--------------HHcCCC-EEEEECcc
Confidence 5777777888899999999999999998873222 34 555554443 567888 55555443
No 236
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=24.44 E-value=6.7e+02 Score=24.48 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=50.9
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|++++.+.++ ..+.+.+.+++++.|+... +..... .+++..+++ +.+..++++ .+|....
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~~~~~~~d-giii~~~- 64 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYKLI-LCNSDN---DPEKEREYL-----------EMLRQNQVD-GIIAGTH- 64 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCeEE-EecCCc---cHHHHHHHH-----------HHHHHcCCC-EEEEecC-
Confidence 6777766554 3455677788889997764 222223 444444444 444455677 4444332
Q ss_pred CCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHH
Q psy246 521 SNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALA 573 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~ 573 (615)
...+.-. -....|||.+=... +.+++++..++-..+..+
T Consensus 65 ~~~~~~~--~~~gipvv~~~~~~------------~~~~~~V~~d~~~~g~~~ 103 (265)
T cd06291 65 NLGIEEY--ENIDLPIVSFDRYL------------SENIPIVSSDNYEGGRLA 103 (265)
T ss_pred CcCHHHH--hcCCCCEEEEeCCC------------CCCCCeEeechHHHHHHH
Confidence 2223211 23356777653221 234566666654433333
No 237
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.34 E-value=1.3e+02 Score=31.87 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHh
Q psy246 424 LNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVM 503 (615)
Q Consensus 424 enY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~ 503 (615)
++|.++++++.. .+.-.|++|+.+|.+.++++...+..-..+ ++...-- ..+..++..++ +
T Consensus 200 e~~a~l~~~l~~-----~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~--~~~~l~g-~~sL~el~ali-----------~ 260 (348)
T PRK10916 200 YHYAELAQQLID-----EGYQVVLFGSAKDHEAGNEILAALNTEQQA--WCRNLAG-ETQLEQAVILI-----------A 260 (348)
T ss_pred HHHHHHHHHHHH-----CCCeEEEEeCHHhHHHHHHHHHhccccccc--ceeeccC-CCCHHHHHHHH-----------H
Confidence 478888888752 122345679999999888876654321111 2222211 11444554444 2
Q ss_pred hhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCC
Q psy246 504 KSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 504 ~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
.++ ++|+.-.+--||+ +-...|||++=-++
T Consensus 261 -----~a~-l~I~nDTGp~HlA----aA~g~P~valfGpt 290 (348)
T PRK10916 261 -----ACK-AIVTNDSGLMHVA----AALNRPLVALYGPS 290 (348)
T ss_pred -----hCC-EEEecCChHHHHH----HHhCCCEEEEECCC
Confidence 365 9999888777765 45567888765433
No 238
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=24.13 E-value=6.4e+02 Score=24.59 Aligned_cols=32 Identities=6% Similarity=-0.061 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCCCHH---HHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSSSDLP---FANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~---~~~~~~~~l~~~gi~~~ 472 (615)
..+|++++|+..... -.+-..+++++.|++..
T Consensus 116 ~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~ 150 (265)
T cd06299 116 HKKIGYISGPQDTSTGRERLEAFRQACASLGLEVN 150 (265)
T ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCC
Confidence 458999998775432 23455667788887654
No 239
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=24.08 E-value=1.4e+03 Score=28.11 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=61.2
Q ss_pred HHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC-CchhhhcccCC
Q psy246 456 FANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN-GLGPVISGNTC 533 (615)
Q Consensus 456 ~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~-~L~gvva~~t~ 533 (615)
..++.....+++|+.-. +..+.+- .+.++.++. +.+. ...+ |||.-+=-++ +|..+=|..+-
T Consensus 604 ~i~~L~~la~~~gL~g~V~flG~~~---~~~~~~ely-----------r~iA-d~ad-VfV~PS~~EpFGLvvLEAMAcG 667 (784)
T TIGR02470 604 EIEKMHNLIDQYQLHGQIRWIGAQL---NRVRNGELY-----------RYIA-DTKG-IFVQPALYEAFGLTVLEAMTCG 667 (784)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCcC---CcccHHHHH-----------HHhh-ccCc-EEEECCcccCCCHHHHHHHHcC
Confidence 55667777889998865 5556542 223333332 2111 1234 7776664444 66666777888
Q ss_pred CCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc-----cCCHHHHHHHHHH
Q psy246 534 YPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA-----QRDFFIWSKLRMY 592 (615)
Q Consensus 534 ~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~-----~~d~~l~~kl~~~ 592 (615)
+|||+ +..+|...+.. .--.|. -|+ +.+..-+|..|.. +.|+..|.++...
T Consensus 668 lPVVA--T~~GG~~EiV~--dg~tGf---LVd-p~D~eaLA~aL~~ll~kll~dp~~~~~ms~~ 723 (784)
T TIGR02470 668 LPTFA--TRFGGPLEIIQ--DGVSGF---HID-PYHGEEAAEKIVDFFEKCDEDPSYWQKISQG 723 (784)
T ss_pred CCEEE--cCCCCHHHHhc--CCCcEE---EeC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99998 33456554321 112232 232 2233333444433 4789999887654
No 240
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.07 E-value=2.6e+02 Score=30.42 Aligned_cols=60 Identities=3% Similarity=0.072 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCc
Q psy246 450 SSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGL 524 (615)
Q Consensus 450 s~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L 524 (615)
+.++.+.+++.....++.|.... .+.-+|+ .+|+++.+++ +.+++.|++. |.++-..+.+
T Consensus 109 ~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~--~~~e~l~~~a-----------~~~~~~Ga~~--i~i~DT~G~~ 169 (333)
T TIGR03217 109 HCTEADVSEQHIGMARELGMDTVGFLMMSHM--TPPEKLAEQA-----------KLMESYGADC--VYIVDSAGAM 169 (333)
T ss_pred ccchHHHHHHHHHHHHHcCCeEEEEEEcccC--CCHHHHHHHH-----------HHHHhcCCCE--EEEccCCCCC
Confidence 67788889999999999998887 7777887 5788888888 7777778873 3555554444
No 241
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.07 E-value=4.8e+02 Score=25.63 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=24.8
Q ss_pred CCeEEEEeCCCC---CHHHHHHHHHHhhccCCCee--EEEeccc
Q psy246 441 DNLVVLALGSSS---DLPFANKIDDANHDPQWSDE--QILSANL 479 (615)
Q Consensus 441 ~~~V~Ii~gs~S---D~~~~~~~~~~l~~~gi~~~--~V~saHR 479 (615)
..+|+++.|... .....+...+.+++.|+++. .+...+.
T Consensus 122 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~ 165 (273)
T cd06292 122 HRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMF 165 (273)
T ss_pred CceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCC
Confidence 457888887532 23445666778888888764 5555554
No 242
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=23.99 E-value=5.9e+02 Score=24.72 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=25.3
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHH
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMK 491 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~ 491 (615)
|+++..+.+| ..+.+.+...+++.|+... +..... .+++..+.+
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~-~~~~~~---~~~~~~~~~ 48 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELT-VLDAQN---DAAKQLNDI 48 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEE-ecCCCC---CHHHHHHHH
Confidence 5666665555 4455677777888886664 333333 555554444
No 243
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=23.80 E-value=3.1e+02 Score=21.92 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHH
Q psy246 451 SSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMK 491 (615)
Q Consensus 451 ~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~ 491 (615)
.+.=|.+.++...|++.|++++- ..+.. .++...++.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~-i~i~~---~~~~~~~~~ 43 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEE-IDVDG---DPALREEMI 43 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEE-EECCC---CHHHHHHHH
Confidence 34569999999999999999972 22334 445544443
No 244
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.69 E-value=1.7e+02 Score=30.27 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=50.3
Q ss_pred HhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCC
Q psy246 463 ANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPL 542 (615)
Q Consensus 463 ~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~ 542 (615)
.+++||+....+.+ +-...+|.++.+++ +..++++++ ++++=.+.+..+.-.+|-.|..||+.+.+.
T Consensus 183 ~~~~ygl~~~~~~~-~~~eps~~~l~~l~-----------~~ik~~~v~-~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 183 FARDYGLTQIPIEE-EGKEPSPADLKRLI-----------DLAKEKGVR-VVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHcCCEEEecCC-CCCCCCHHHHHHHH-----------HHHHHcCCC-EEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 34788998665433 32356888998888 888888998 777778888888888888888888776543
No 245
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.65 E-value=2e+02 Score=30.31 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=40.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
--|-|+.-+.||..+..+|..-+ .+|-.|. .|.|+- |..-.+++ +.+ ..|++.|+||-
T Consensus 7 VDVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIi-----PTT~~eIA-----------~ra-aeGADlvlIAT 65 (290)
T COG4026 7 VDVRIIVEGASDVEVISKALQRL-ALGSEYNITISSII-----PTTNVEIA-----------KRA-AEGADLVLIAT 65 (290)
T ss_pred ceEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeec-----cCchHHHH-----------HHh-hccCCEEEEee
Confidence 35889999999999988876654 5788888 888873 33333444 222 23788777774
No 246
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.48 E-value=4.1e+02 Score=23.46 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCHHHH--HHHHHHhhccCCCee
Q psy246 443 LVVLALGSSSDLPFA--NKIDDANHDPQWSDE 472 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~--~~~~~~l~~~gi~~~ 472 (615)
+|.+++|+--=-..+ +++.+.|++.|++++
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~ 35 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVE 35 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEE
Confidence 588888886655554 899999999999987
No 247
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.29 E-value=2.4e+02 Score=30.19 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=60.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEe--cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILS--ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~s--aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...|+|+=.|---+.+.+++...|=.-.+=|- ...- =-| +++++.++. ..+++.|.+ ++++.++||
T Consensus 5 ~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~k---s~e~I~~~~---~~i~~~l~~----~~ik~lVIA 74 (269)
T COG0796 5 QPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEK---SEEEIRERT---LEIVDFLLE----RGIKALVIA 74 (269)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCC---CHHHHHHHH---HHHHHHHHH----cCCCEEEEe
Confidence 45799998888999999999998844333332 1110 125 777777664 444444433 458889999
Q ss_pred ecCCCCCchhhhcccCCCCeeccCCC
Q psy246 517 VAGKSNGLGPVISGNTCYPVINCPPL 542 (615)
Q Consensus 517 ~AG~~~~L~gvva~~t~~PVI~vP~~ 542 (615)
+-=.|+.--.-+=...+.|||||=|.
T Consensus 75 CNTASa~al~~LR~~~~iPVvGviPa 100 (269)
T COG0796 75 CNTASAVALEDLREKFDIPVVGVIPA 100 (269)
T ss_pred cchHHHHHHHHHHHhCCCCEEEeccc
Confidence 86665544444445669999998743
No 248
>PRK11175 universal stress protein UspE; Provisional
Probab=23.12 E-value=2.6e+02 Score=28.60 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=21.3
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhh--------hcccCCCCeeccCCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPV--------ISGNTCYPVINCPPL 542 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gv--------va~~t~~PVI~vP~~ 542 (615)
+.++..+++.||++.-|. +.+... +.-++.+||+-||..
T Consensus 101 ~~a~~~~~DLiV~G~~~~-~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 101 QEVIAGGHDLVVKMTHQH-DKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHhcCCCEEEEeCCCC-cHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 333556777333333343 334433 335677888888863
No 249
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.81 E-value=7.2e+02 Score=24.28 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|++++-+.+| ..+.+.+.+.+++.|+.+. +..... .++.-.+.+ +.+..++++ .+|..+..
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~-i~~~~~---~~~~~~~~~-----------~~~~~~~vd-giii~~~~ 65 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLI-VSIANQ---DLNKQLSDV-----------EDFITKKVD-AIVLSPVD 65 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEE-EecCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEcCCC
Confidence 5666666555 2344667777778887664 222233 455444444 334445677 44443322
Q ss_pred CCCchhhhcc--cCCCCeeccC
Q psy246 521 SNGLGPVISG--NTCYPVINCP 540 (615)
Q Consensus 521 ~~~L~gvva~--~t~~PVI~vP 540 (615)
.......+.- ....|||.+-
T Consensus 66 ~~~~~~~~~~~~~~~ipvV~~~ 87 (267)
T cd06322 66 SKGIRAAIAKAKKAGIPVITVD 87 (267)
T ss_pred hhhhHHHHHHHHHCCCCEEEEc
Confidence 2222333322 2346787764
No 250
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=22.45 E-value=60 Score=34.82 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=26.6
Q ss_pred cCCCCeeccCCCCC--chhhhhhhhcCC-----------CCceeeee
Q psy246 531 NTCYPVINCPPLDS--TGRDVWSSLNLP-----------AGIACSTV 564 (615)
Q Consensus 531 ~t~~PVI~vP~~~~--g~~~l~S~lqmp-----------~Gv~v~tv 564 (615)
...+|+|-++-+.+ .-.+++|..||+ .|+|...|
T Consensus 155 e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsV 201 (294)
T COG0777 155 EDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISV 201 (294)
T ss_pred HhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 45799999998776 456777777775 48899888
No 251
>PRK13059 putative lipid kinase; Reviewed
Probab=22.32 E-value=2.2e+02 Score=29.85 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh
Q psy246 449 GSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV 527 (615)
Q Consensus 449 gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv 527 (615)
|+.+.....+++...|++-|+.+. ....-+. ..+. + .++...+.+ + |.++|+.+.+.-|
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~---~~~~----~-----------~~~~~~~~d-~-vi~~GGDGTv~ev 72 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEY---DLKN----A-----------FKDIDESYK-Y-ILIAGGDGTVDNV 72 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcc---hHHH----H-----------HHHhhcCCC-E-EEEECCccHHHHH
Confidence 555555667888899999998865 2222121 1111 1 222234566 4 4477888999988
Q ss_pred hcccC----CCCeeccCCCC
Q psy246 528 ISGNT----CYPVINCPPLD 543 (615)
Q Consensus 528 va~~t----~~PVI~vP~~~ 543 (615)
+.++. ..|+--+|.-+
T Consensus 73 v~gl~~~~~~~~lgviP~GT 92 (295)
T PRK13059 73 VNAMKKLNIDLPIGILPVGT 92 (295)
T ss_pred HHHHHhcCCCCcEEEECCCC
Confidence 87764 34544456433
No 252
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=22.32 E-value=1.3e+02 Score=29.26 Aligned_cols=73 Identities=8% Similarity=0.117 Sum_probs=39.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhcc-CCCeeEEEecc--------cCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDP-QWSDEQILSAN--------LDNVARDEVQIMKRLSLVVFEILVMKSWSSGKN 511 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~-gi~~~~V~saH--------R~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (615)
..+|+|++-.. -.........+++. |++.+-+...| ...++++....+. +++.+.....+++
T Consensus 107 ~~ri~vl~t~~--~~~~~~~~~~~~~~~gi~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~-------~~~~~l~~~~~~d 177 (216)
T PF01177_consen 107 GKRIGVLTTYT--TEKSPLYEEFIEEAAGIDDEVVAGIHNAIYDVIELGDIPPEQIEILA-------EAARELIKEDGAD 177 (216)
T ss_dssp SSEEEEEESHH--HHHHTHHHHHHHHCTTEECEEEEEEEEEHTHHHHTTCTTHHHHHHHH-------HHHHHHHHCTTSS
T ss_pred CCEEEEEecCc--ccchHHHHHHHHHhcCCcHHHHHHHHhhcHHHHhhhcCCHHHHHHHH-------HHHHHHhccCCCC
Confidence 34799988532 22334455666777 87333222222 2233444333333 3343333467889
Q ss_pred EEEEEecCCCC
Q psy246 512 VVFIAVAGKSN 522 (615)
Q Consensus 512 ~V~Ia~AG~~~ 522 (615)
.||+++++++.
T Consensus 178 ~iiLgCt~l~~ 188 (216)
T PF01177_consen 178 AIILGCTHLPL 188 (216)
T ss_dssp EEEEESTTGGG
T ss_pred EEEECCCchHH
Confidence 89999888753
No 253
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=22.27 E-value=7.5e+02 Score=24.25 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=33.7
Q ss_pred EEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 444 VVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 444 V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
|+++..+.++ ..+.+.+...++++|+.+.-+.+ +. .++...+++ +.+-.++++ .||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~-~~---~~~~~~~~i-----------~~~~~~~vd-gii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLIITAG-HH---SAEKEREAI-----------EFLLERRCD-ALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEEEEeC-CC---chHHHHHHH-----------HHHHHcCCC-EEEEec
Confidence 5666655444 24556777888889988753333 33 444444444 444446787 555543
No 254
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=22.17 E-value=1.7e+02 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEe
Q psy246 285 VQIMKRLSLVVFEILEKVWASLNCVLVDMKIE 316 (615)
Q Consensus 285 ~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~E 316 (615)
-..+.+++..+.+.|...|...|+.|+++.+|
T Consensus 160 ~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~I~ 191 (211)
T PF13421_consen 160 PAHLDEISEALKEKLNPEFERYGIELVDFGIE 191 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEE
Confidence 34788999999999999999999999999996
No 255
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.95 E-value=8.2e+02 Score=24.56 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHhhcccCCC-CCeEEEEeCCC--CCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHH
Q psy246 421 QVKLNFTWIADTLASVKRPT-DNLVVLALGSS--SDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMK 491 (615)
Q Consensus 421 ~VkenY~eVA~~L~~~k~~~-~~~V~Ii~gs~--SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~ 491 (615)
.+..+.+.-...|....... ..+|+|+.||. .|-.-+.++...|++-||.+. .+-..+- +.+.++.+.
T Consensus 86 ~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~---~~~~l~~~~ 158 (187)
T cd01452 86 NFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDD---NTEKLTAFI 158 (187)
T ss_pred hHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCC---CHHHHHHHH
Confidence 34444443334444322222 24777777776 455667788899999999998 6766777 778887776
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=21.85 E-value=1.9e+02 Score=28.84 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=48.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
..+|++++..+.=..-.++.+...+.+|+++..+-..+ .|.++. ++.+ +....++++.|+|=-+|+
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~----~~~~~~---------~~~l-~~~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES----DPAEIA---------REAL-EKFRKKGYDLVLIDTAGR 94 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS----CHHHHH---------HHHH-HHHHHTTSSEEEEEE-SS
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch----hhHHHH---------HHHH-HHHhhcCCCEEEEecCCc
Confidence 45799999998889999999999999999975422222 343332 2223 334556788899999999
Q ss_pred CCCchh
Q psy246 521 SNGLGP 526 (615)
Q Consensus 521 ~~~L~g 526 (615)
+..-+.
T Consensus 95 ~~~d~~ 100 (196)
T PF00448_consen 95 SPRDEE 100 (196)
T ss_dssp SSTHHH
T ss_pred chhhHH
Confidence 886554
No 257
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=21.82 E-value=1.2e+02 Score=29.44 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=49.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccC-CcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC
Q psy246 444 VVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLD-NVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN 522 (615)
Q Consensus 444 V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~-~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~ 522 (615)
|+++ +..|+..+.+++.+.+...--..-.+.+..+. ..+.+.-.........+.++.++. +..|++.+++++.....
T Consensus 1 Ig~i-~p~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~d~i~i~C~s~~~ 78 (216)
T PF01177_consen 1 IGVI-SPNSNLTVERELRRMLPAREGQEVYFHDTRGFPDRIKEEDAGMSAILDRLIEAAEKL-EKAGVDAIVIACNSAHP 78 (216)
T ss_dssp EEEE-SSSTTHHHHHHHHHHSTTSCCTEEEEEETTTSCTSHHHHHHHHHHHHHHHHHHHHHH-HHTTESEEEESSHHHHH
T ss_pred CEEE-EchHHHHHHHHHHHHhccccCCEEEEEeCCCCCCccHHHhcchHHHHHHHHHHHHHH-HhCCCCEEEEcCCchhh
Confidence 4555 89999999999999986544331133333310 013343101000123556666443 44788844444433222
Q ss_pred CchhhhcccCCCCeeccC
Q psy246 523 GLGPVISGNTCYPVINCP 540 (615)
Q Consensus 523 ~L~gvva~~t~~PVI~vP 540 (615)
.+...-...+..||++.+
T Consensus 79 ~~~~~~~~~~~iPv~~~~ 96 (216)
T PF01177_consen 79 FVDELRKERVGIPVVGIV 96 (216)
T ss_dssp HHHHHHHHHHSSEEEESH
T ss_pred hHHHHhhhcCceEEEecc
Confidence 333333256789999844
No 258
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=21.44 E-value=4.3e+02 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=26.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEec---cc--CCcchHHHHHHH
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSA---NL--DNVARDEVQIMK 491 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~sa---HR--~~~~p~~~~~~~ 491 (615)
+++|++-|++|+| .+.++++||..- .|.-= .+ .+++++++.+..
T Consensus 1 Ki~IitDS~~dl~-----~~~~~~~~i~vvPl~i~~~~~~y~D~~~i~~~efy~~l 51 (280)
T PF02645_consen 1 KIAIITDSTSDLP-----PELAEEYGIYVVPLNIIIDGKEYRDGVDISPEEFYEKL 51 (280)
T ss_dssp -EEEEEEGGG--------HHHHHHTTEEEE--EEEETTEEEETTTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCC-----HHHHHhCCeEEEeEEEecCCeEEecCCCCCHHHHHHHH
Confidence 5899999999998 344566777654 32211 11 367888887766
No 259
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=21.33 E-value=7.4e+02 Score=24.49 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=26.0
Q ss_pred CCeEEEE-eCCCCCHHHHHHHHHHhhccCCCeeEE
Q psy246 441 DNLVVLA-LGSSSDLPFANKIDDANHDPQWSDEQI 474 (615)
Q Consensus 441 ~~~V~Ii-~gs~SD~~~~~~~~~~l~~~gi~~~~V 474 (615)
.++|++| ++|..+-...++....++.+|+....+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~ 63 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHL 63 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 4566666 677666778899999999999987743
No 260
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.16 E-value=3.8e+02 Score=29.18 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCch
Q psy246 449 GSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLG 525 (615)
Q Consensus 449 gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~ 525 (615)
-+.++...+.+.....++.|..+. .+.-+|+ .+|+++.+++ +.+++.|++ .|.++-..+.+-
T Consensus 109 ~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~--~~~e~l~~~a-----------~~~~~~Ga~--~i~i~DT~G~~~ 171 (337)
T PRK08195 109 THCTEADVSEQHIGLARELGMDTVGFLMMSHM--APPEKLAEQA-----------KLMESYGAQ--CVYVVDSAGALL 171 (337)
T ss_pred EecchHHHHHHHHHHHHHCCCeEEEEEEeccC--CCHHHHHHHH-----------HHHHhCCCC--EEEeCCCCCCCC
Confidence 367777788888888888888777 7777787 5678887777 666667777 345555554443
No 261
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=21.06 E-value=2.8e+02 Score=22.63 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHhhccCCCee
Q psy246 451 SSDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 451 ~SD~~~~~~~~~~l~~~gi~~~ 472 (615)
.+.=|.+.+|...|++.|++++
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~ 27 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFT 27 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcE
Confidence 4567899999999999999998
No 262
>PRK00865 glutamate racemase; Provisional
Probab=20.66 E-value=2.5e+02 Score=29.12 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=54.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee----EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE----QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~----~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..|+|+=.|--=+.+.+++...+-...+=|- ++=---| +++++.+++ ..+.+.| +..|++.++||+
T Consensus 6 ~~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~k---s~~~i~~~~---~~~~~~L----~~~g~d~iVIaC 75 (261)
T PRK00865 6 APIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEK---SEEEIRERT---LEIVEFL----LEYGVKMLVIAC 75 (261)
T ss_pred CeEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCC---CHHHHHHHH---HHHHHHH----HhCCCCEEEEeC
Confidence 3588888888889999999988844333332 1111235 788887765 3333333 346888666666
Q ss_pred cCCCC-CchhhhcccCCCCeecc
Q psy246 518 AGKSN-GLGPVISGNTCYPVINC 539 (615)
Q Consensus 518 AG~~~-~L~gvva~~t~~PVI~v 539 (615)
-..++ ++. -+-..+..||||+
T Consensus 76 NTa~~~~l~-~lr~~~~iPvigi 97 (261)
T PRK00865 76 NTASAVALP-DLRERYDIPVVGI 97 (261)
T ss_pred chHHHHHHH-HHHHhCCCCEEee
Confidence 65543 333 3445678999993
No 263
>PRK11175 universal stress protein UspE; Provisional
Probab=20.26 E-value=2.3e+02 Score=29.07 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=36.6
Q ss_pred HHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh--------hccc
Q psy246 460 IDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV--------ISGN 531 (615)
Q Consensus 460 ~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv--------va~~ 531 (615)
....++.+|++.+++.-.+. .|.+. +. +.++..+++.|+++.-|.+ .+... |.-+
T Consensus 228 l~~~~~~~~~~~~~~~v~~G---~~~~~--I~-----------~~a~~~~~DLIVmG~~~~~-~~~~~llGS~a~~v~~~ 290 (305)
T PRK11175 228 MKALRQKFGIDEEQTHVEEG---LPEEV--IP-----------DLAEHLDAELVILGTVGRT-GLSAAFLGNTAEHVIDH 290 (305)
T ss_pred HHHHHHHhCCChhheeeccC---CHHHH--HH-----------HHHHHhCCCEEEECCCccC-CCcceeecchHHHHHhc
Confidence 44455677887653222344 44322 22 4446678884444444664 33333 3456
Q ss_pred CCCCeeccCCC
Q psy246 532 TCYPVINCPPL 542 (615)
Q Consensus 532 t~~PVI~vP~~ 542 (615)
.++||+-||+.
T Consensus 291 ~~~pVLvv~~~ 301 (305)
T PRK11175 291 LNCDLLAIKPD 301 (305)
T ss_pred CCCCEEEEcCC
Confidence 78999999854
No 264
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.17 E-value=8.6e+02 Score=24.12 Aligned_cols=146 Identities=10% Similarity=-0.042 Sum_probs=74.5
Q ss_pred eEEEEeCCCCC----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSD----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
+|.+|.||.+- ...++.+.+.+.+-|+.++ +...+.. .++.......-...+-++. +..+. ++.+||+.-
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~-~idL~~l--~~~~~~~~~~~~~~~~~~~-~~i~~--AD~iIi~tP 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVY-HWNLQNF--APEDLLYARFDSPALKTFT-EQLAQ--ADGLIVATP 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEE-EEEccCC--ChHHHHhccCCCHHHHHHH-HHHHH--CCEEEEECC
Confidence 68999999875 4566777777777887776 2223221 1111110000000111111 33332 554666654
Q ss_pred CCCCCchhh----h-----cccCCCCeeccCCCCC-----ch----hhhhhhhcC---CCCceeeeecCh-hhHHHHHHH
Q psy246 519 GKSNGLGPV----I-----SGNTCYPVINCPPLDS-----TG----RDVWSSLNL---PAGIACSTVTAP-SNAALAAAQ 576 (615)
Q Consensus 519 G~~~~L~gv----v-----a~~t~~PVI~vP~~~~-----g~----~~l~S~lqm---p~Gv~v~tv~~~-~nAa~~A~~ 576 (615)
==.+..||+ + ..+..+||.-+-+..+ .+ ..+++.+++ |.|+-...-+.. ++.
T Consensus 76 ~Y~~s~pg~LKn~iD~l~~~~l~~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~~~~~~~~~~~~~d~------ 149 (191)
T PRK10569 76 VYKASFSGALKTLLDLLPERALEHKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHH------ 149 (191)
T ss_pred ccCCCCCHHHHHHHHhCChhhhCCCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCceEEEechhhhcccc------
Confidence 333444443 3 2355667765555432 22 266777764 566655543221 211
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHH
Q psy246 577 ILAQRDFFIWSKLRMYQTKLYIALN 601 (615)
Q Consensus 577 Il~~~d~~l~~kl~~~~~~~~~~~~ 601 (615)
--.+ |+.+++||+..-.+....+.
T Consensus 150 ~~~~-d~~~~~rl~~~~~~~~~~~~ 173 (191)
T PRK10569 150 QPQF-TPNLQTRLDEALETFWQALH 173 (191)
T ss_pred cccc-CHHHHHHHHHHHHHHHHHHc
Confidence 1123 88999999888777765443
No 265
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.11 E-value=3.6e+02 Score=27.21 Aligned_cols=30 Identities=7% Similarity=-0.083 Sum_probs=18.8
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCee
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~ 472 (615)
+|+++..+.++ ..+.+.+.+.+++.|+...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 33 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVV 33 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 46666655433 2455566777888887764
No 266
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=20.07 E-value=2.3e+02 Score=25.59 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC----Cchh
Q psy246 451 SSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN----GLGP 526 (615)
Q Consensus 451 ~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~----~L~g 526 (615)
.+|-...+....+|+.+|-.++.+.+.. .... ....... +.+.+.|... .|-.
T Consensus 6 ddd~~R~~~L~~ILeFlGe~~~~~~~~~--------~~~~--------------~~~~~~~-~~~v~~g~~~~~~~~l~~ 62 (109)
T PF06490_consen 6 DDDAERRQRLSTILEFLGEQCEAVSSSD--------WSQA--------------DWSSPWE-ACAVILGSCSKLAELLKE 62 (109)
T ss_pred CCcHHHHHhhhhhhhhcCCCeEEecHHH--------HHHh--------------hhhcCCc-EEEEEecCchhHHHHHHH
Confidence 6788999999999999999987655432 1111 1112222 3333344433 5666
Q ss_pred hhcccCCCCeeccCCCC
Q psy246 527 VISGNTCYPVINCPPLD 543 (615)
Q Consensus 527 vva~~t~~PVI~vP~~~ 543 (615)
++......||+-+-...
T Consensus 63 l~~~~~~~Pvlllg~~~ 79 (109)
T PF06490_consen 63 LLKWAPHIPVLLLGEHD 79 (109)
T ss_pred HHhhCCCCCEEEECCCC
Confidence 66667788888766544
No 267
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.02 E-value=2.2e+02 Score=30.90 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=26.4
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhh-hcccCCCCeeccCCCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPV-ISGNTCYPVINCPPLD 543 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gv-va~~t~~PVI~vP~~~ 543 (615)
+..++.+++ .+|++.|-. .+.++ .=+....||||||-..
T Consensus 87 ~~l~~~~Id-~Li~IGGd~-s~~~a~~L~e~~i~vigiPkTI 126 (320)
T PRK03202 87 ENLKKLGID-ALVVIGGDG-SYMGAKRLTEHGIPVIGLPGTI 126 (320)
T ss_pred HHHHHcCCC-EEEEeCChH-HHHHHHHHHhcCCcEEEecccc
Confidence 777778998 888886653 33332 2224589999999754
Done!