Query psy246
Match_columns 615
No_of_seqs 388 out of 2664
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:51:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h31_A Multifunctional protein 100.0 6E-116 2E-120 938.7 37.3 410 7-610 5-423 (425)
2 3kre_A Phosphoribosylaminoimid 100.0 3.4E-67 1.2E-71 531.4 18.3 235 9-435 22-259 (263)
3 2gqr_A Phosphoribosylaminoimid 100.0 4.6E-67 1.6E-71 524.5 18.7 233 9-434 1-233 (237)
4 3nua_A Phosphoribosylaminoimid 100.0 6.2E-67 2.1E-71 523.9 17.8 234 8-434 4-237 (238)
5 2ywv_A Phosphoribosylaminoimid 100.0 9.2E-67 3.2E-71 524.3 17.2 236 7-435 3-238 (244)
6 2z02_A Phosphoribosylaminoimid 100.0 2.7E-66 9.2E-71 520.3 18.6 233 9-434 8-240 (242)
7 1kut_A Phosphoribosylaminoimid 100.0 1.3E-64 4.4E-69 504.9 17.0 226 14-435 1-226 (230)
8 3u55_A Phosphoribosylaminoimid 100.0 3.1E-63 1.1E-67 497.9 20.1 233 9-435 1-233 (238)
9 2cnq_A Phosphoribosylaminoimid 100.0 2.3E-59 7.9E-64 483.4 15.0 259 12-435 12-301 (306)
10 3r9r_A Phosphoribosylaminoimid 100.0 1.2E-57 4E-62 469.5 16.3 243 12-435 12-290 (301)
11 3rg8_A Phosphoribosylaminoimid 100.0 2.7E-49 9.3E-54 374.2 16.6 151 442-608 3-158 (159)
12 3lp6_A Phosphoribosylaminoimid 100.0 6.4E-49 2.2E-53 375.6 16.4 156 440-610 6-167 (174)
13 3trh_A Phosphoribosylaminoimid 100.0 7.6E-49 2.6E-53 373.6 16.5 155 440-609 5-167 (169)
14 3ors_A N5-carboxyaminoimidazol 100.0 3.5E-49 1.2E-53 374.3 13.8 152 441-607 3-162 (163)
15 1o4v_A Phosphoribosylaminoimid 100.0 1.5E-48 5E-53 375.4 16.6 154 441-609 13-172 (183)
16 1xmp_A PURE, phosphoribosylami 100.0 2E-48 6.7E-53 370.8 15.3 152 441-607 11-170 (170)
17 4b4k_A N5-carboxyaminoimidazol 100.0 9.8E-48 3.3E-52 368.4 16.6 151 441-606 22-180 (181)
18 1u11_A PURE (N5-carboxyaminoim 100.0 3.9E-48 1.3E-52 372.1 12.8 153 441-608 21-181 (182)
19 3kuu_A Phosphoribosylaminoimid 100.0 1.2E-47 4.3E-52 366.4 15.0 151 441-606 12-170 (174)
20 3oow_A Phosphoribosylaminoimid 100.0 1.2E-47 4.1E-52 364.4 13.9 150 442-606 6-163 (166)
21 2ywx_A Phosphoribosylaminoimid 100.0 3.6E-47 1.2E-51 358.6 15.9 150 443-610 1-155 (157)
22 4grd_A N5-CAIR mutase, phospho 100.0 4.5E-47 1.5E-51 362.0 15.6 149 440-603 11-167 (173)
23 3nua_A Phosphoribosylaminoimid 99.9 7.5E-23 2.6E-27 205.2 2.1 110 74-188 94-235 (238)
24 3kre_A Phosphoribosylaminoimid 99.8 1.6E-22 5.4E-27 205.2 3.3 109 74-187 111-255 (263)
25 2z02_A Phosphoribosylaminoimid 99.8 1.8E-22 6E-27 203.0 2.0 109 74-187 96-237 (242)
26 2gqr_A Phosphoribosylaminoimid 99.8 5.5E-22 1.9E-26 198.9 2.2 109 74-187 90-230 (237)
27 2ywv_A Phosphoribosylaminoimid 99.8 5.5E-22 1.9E-26 199.6 1.6 108 74-186 93-233 (244)
28 1kut_A Phosphoribosylaminoimid 99.8 1.2E-21 4E-26 195.8 1.0 107 74-187 83-222 (230)
29 3u55_A Phosphoribosylaminoimid 99.8 2.9E-20 9.9E-25 186.7 4.4 108 74-187 89-229 (238)
30 2h31_A Multifunctional protein 99.8 1.6E-20 5.3E-25 201.8 1.7 120 74-197 97-256 (425)
31 2cnq_A Phosphoribosylaminoimid 99.5 5.1E-16 1.7E-20 160.7 0.0 99 74-175 118-267 (306)
32 3r9r_A Phosphoribosylaminoimid 99.5 4.4E-15 1.5E-19 153.4 0.0 100 74-176 103-252 (301)
33 3uhj_A Probable glycerol dehyd 95.7 0.0099 3.4E-07 63.2 5.7 87 442-544 53-141 (387)
34 1o2d_A Alcohol dehydrogenase, 95.3 0.025 8.4E-07 59.4 7.0 88 442-544 41-151 (371)
35 1jq5_A Glycerol dehydrogenase; 95.2 0.012 4.1E-07 61.5 4.4 88 442-544 32-121 (370)
36 3bfj_A 1,3-propanediol oxidore 94.8 0.021 7.1E-07 60.1 4.7 88 442-544 34-145 (387)
37 3ox4_A Alcohol dehydrogenase 2 94.5 0.025 8.5E-07 59.8 4.4 88 442-544 32-141 (383)
38 3hl0_A Maleylacetate reductase 94.0 0.023 7.8E-07 59.6 2.9 86 442-544 35-122 (353)
39 1ta9_A Glycerol dehydrogenase; 93.6 0.036 1.2E-06 60.1 3.6 86 443-544 93-180 (450)
40 3jzd_A Iron-containing alcohol 93.4 0.03 1E-06 58.8 2.6 87 442-544 37-124 (358)
41 1rrm_A Lactaldehyde reductase; 93.2 0.026 8.7E-07 59.3 1.5 88 442-544 32-143 (386)
42 1vlj_A NADH-dependent butanol 93.0 0.074 2.5E-06 56.5 4.8 88 442-544 44-154 (407)
43 1oj7_A Hypothetical oxidoreduc 92.7 0.067 2.3E-06 56.8 3.9 86 442-544 51-162 (408)
44 3okf_A 3-dehydroquinate syntha 92.5 0.16 5.4E-06 54.3 6.4 88 441-542 62-158 (390)
45 1sg6_A Pentafunctional AROM po 92.5 0.099 3.4E-06 55.4 4.9 87 442-543 37-141 (393)
46 3ce9_A Glycerol dehydrogenase; 92.1 0.14 4.7E-06 53.1 5.4 87 442-544 35-123 (354)
47 2gru_A 2-deoxy-scyllo-inosose 90.3 0.46 1.6E-05 49.8 7.3 86 442-542 35-129 (368)
48 3iv7_A Alcohol dehydrogenase I 89.2 0.13 4.3E-06 54.3 1.8 82 443-544 39-123 (364)
49 1xah_A Sadhqs, 3-dehydroquinat 88.6 0.32 1.1E-05 50.6 4.3 86 442-544 32-127 (354)
50 1kq3_A Glycerol dehydrogenase; 87.9 0.11 3.7E-06 54.5 0.3 86 442-544 42-129 (376)
51 3rf7_A Iron-containing alcohol 87.8 0.35 1.2E-05 51.2 4.0 85 442-544 54-162 (375)
52 3kke_A LACI family transcripti 85.0 20 0.00069 34.8 14.9 128 441-598 15-159 (303)
53 3qbe_A 3-dehydroquinate syntha 84.5 0.83 2.8E-05 48.4 4.9 89 442-543 44-139 (368)
54 3clh_A 3-dehydroquinate syntha 84.2 0.14 4.8E-06 53.2 -1.1 86 442-542 27-120 (343)
55 3l49_A ABC sugar (ribose) tran 84.2 16 0.00054 34.9 13.5 129 441-597 5-152 (291)
56 3m9w_A D-xylose-binding peripl 83.4 34 0.0012 33.1 16.5 131 442-599 3-152 (313)
57 1ujn_A Dehydroquinate synthase 82.2 1 3.4E-05 47.0 4.3 83 442-542 29-119 (348)
58 2q5c_A NTRC family transcripti 81.5 5.6 0.00019 38.1 9.0 127 442-594 5-140 (196)
59 3egc_A Putative ribose operon 81.1 39 0.0013 32.2 16.6 130 440-598 7-153 (291)
60 3l6u_A ABC-type sugar transpor 80.1 21 0.00073 34.0 12.7 109 440-574 7-120 (293)
61 2pju_A Propionate catabolism o 79.3 12 0.00042 36.8 10.9 128 443-594 14-152 (225)
62 3eth_A Phosphoribosylaminoimid 77.1 1.8 6.3E-05 45.1 4.4 77 280-370 198-276 (355)
63 3kjx_A Transcriptional regulat 76.3 63 0.0021 31.9 17.1 144 425-598 44-214 (344)
64 3o74_A Fructose transport syst 76.3 37 0.0013 31.8 13.0 127 442-596 3-146 (272)
65 3c3k_A Alanine racemase; struc 76.1 44 0.0015 31.9 13.7 128 441-598 8-152 (285)
66 3jy6_A Transcriptional regulat 75.3 42 0.0014 31.8 13.2 110 440-579 6-120 (276)
67 3gv0_A Transcriptional regulat 74.2 62 0.0021 30.9 14.2 130 440-598 7-155 (288)
68 3g1w_A Sugar ABC transporter; 74.1 62 0.0021 31.0 14.2 133 441-598 4-154 (305)
69 3miz_A Putative transcriptiona 73.0 44 0.0015 32.1 12.8 131 441-598 13-159 (301)
70 3dbi_A Sugar-binding transcrip 72.8 53 0.0018 32.3 13.6 131 440-598 60-209 (338)
71 3k5i_A Phosphoribosyl-aminoimi 72.1 2 6.9E-05 45.1 3.2 77 280-369 246-324 (403)
72 4e4t_A Phosphoribosylaminoimid 71.6 3.3 0.00011 43.8 4.8 78 280-370 258-337 (419)
73 3huu_A Transcription regulator 71.5 65 0.0022 31.0 13.8 130 440-598 21-172 (305)
74 1dbq_A Purine repressor; trans 69.3 36 0.0012 32.3 11.1 84 441-540 7-94 (289)
75 1mjh_A Protein (ATP-binding do 68.7 13 0.00043 32.7 7.2 69 457-543 85-161 (162)
76 2iks_A DNA-binding transcripti 68.6 74 0.0025 30.4 13.3 129 441-597 20-165 (293)
77 3h75_A Periplasmic sugar-bindi 66.0 43 0.0015 33.1 11.3 85 441-541 3-94 (350)
78 3rot_A ABC sugar transporter, 65.7 97 0.0033 29.7 14.2 134 442-598 4-158 (297)
79 3s99_A Basic membrane lipoprot 65.4 41 0.0014 34.9 11.4 130 441-596 26-174 (356)
80 2h3h_A Sugar ABC transporter, 65.4 96 0.0033 30.0 13.5 130 443-597 3-150 (313)
81 3tb6_A Arabinose metabolism tr 64.8 81 0.0028 29.8 12.6 130 442-598 16-164 (298)
82 2x7x_A Sensor protein; transfe 64.2 96 0.0033 30.3 13.4 130 441-597 6-155 (325)
83 3gbv_A Putative LACI-family tr 64.0 1E+02 0.0034 29.2 13.6 133 441-598 8-167 (304)
84 2xed_A Putative maleate isomer 64.0 25 0.00086 35.1 9.2 84 442-538 147-238 (273)
85 3k4h_A Putative transcriptiona 63.6 57 0.002 30.9 11.3 131 440-598 7-159 (292)
86 4eg0_A D-alanine--D-alanine li 63.4 3 0.0001 41.8 2.3 80 442-543 14-101 (317)
87 2fqx_A Membrane lipoprotein TM 63.2 73 0.0025 31.7 12.4 131 441-598 4-156 (318)
88 3d8u_A PURR transcriptional re 62.8 98 0.0034 29.0 12.7 128 442-598 4-148 (275)
89 2dgd_A 223AA long hypothetical 62.0 23 0.0008 33.7 8.2 84 442-538 109-201 (223)
90 3q2o_A Phosphoribosylaminoimid 61.7 6.5 0.00022 40.6 4.5 77 280-369 233-311 (389)
91 2vk2_A YTFQ, ABC transporter p 60.9 78 0.0027 30.5 11.9 132 442-596 3-154 (306)
92 3orq_A N5-carboxyaminoimidazol 60.7 6 0.0002 41.0 4.0 73 285-370 234-309 (377)
93 1lyp_A CAP18; lipopolysacchari 60.4 13 0.00045 25.7 4.2 27 585-611 2-28 (32)
94 2qu7_A Putative transcriptiona 59.8 71 0.0024 30.4 11.2 126 441-598 8-150 (288)
95 2rjo_A Twin-arginine transloca 59.7 67 0.0023 31.4 11.3 138 441-598 5-164 (332)
96 3hcw_A Maltose operon transcri 58.1 1.2E+02 0.004 29.1 12.6 131 441-598 7-159 (295)
97 3brs_A Periplasmic binding pro 56.8 77 0.0026 30.0 10.9 131 441-597 5-158 (289)
98 3o1i_D Periplasmic protein TOR 55.9 61 0.0021 30.8 10.0 85 441-539 5-93 (304)
99 3lft_A Uncharacterized protein 55.0 1.4E+02 0.0049 28.6 12.6 82 442-541 3-91 (295)
100 3k9c_A Transcriptional regulat 54.6 53 0.0018 31.5 9.4 127 441-598 12-153 (289)
101 3ixl_A Amdase, arylmalonate de 54.5 45 0.0015 32.7 8.9 84 442-538 118-210 (240)
102 2rgy_A Transcriptional regulat 54.4 1.5E+02 0.0051 28.2 13.0 129 441-598 8-156 (290)
103 3brq_A HTH-type transcriptiona 54.1 89 0.003 29.5 10.8 82 441-540 19-108 (296)
104 2fvy_A D-galactose-binding per 53.9 1.5E+02 0.0052 28.1 14.1 84 442-541 3-92 (309)
105 3d02_A Putative LACI-type tran 53.2 52 0.0018 31.4 9.1 85 441-540 4-93 (303)
106 3ksm_A ABC-type sugar transpor 53.2 69 0.0024 29.9 9.8 83 443-541 2-92 (276)
107 2fep_A Catabolite control prot 53.0 1E+02 0.0036 29.4 11.2 129 441-598 16-162 (289)
108 3u7r_A NADPH-dependent FMN red 52.6 1.1E+02 0.0036 29.0 10.9 138 443-600 4-178 (190)
109 2fn9_A Ribose ABC transporter, 52.2 1.6E+02 0.0054 27.8 15.2 83 442-540 3-90 (290)
110 3e3m_A Transcriptional regulat 51.9 1.5E+02 0.0052 29.3 12.6 129 441-598 70-216 (355)
111 1qpz_A PURA, protein (purine n 51.8 1.3E+02 0.0044 29.5 11.9 132 441-598 58-205 (340)
112 1tq8_A Hypothetical protein RV 51.7 31 0.0011 30.8 6.8 70 456-544 82-161 (163)
113 2hqb_A Transcriptional activat 51.6 37 0.0013 33.4 7.9 60 442-517 6-70 (296)
114 3idf_A USP-like protein; unive 51.2 45 0.0016 28.1 7.5 63 457-540 68-138 (138)
115 3clk_A Transcription regulator 50.8 94 0.0032 29.6 10.4 130 441-598 8-153 (290)
116 3g85_A Transcriptional regulat 50.3 73 0.0025 30.2 9.5 129 440-598 10-155 (289)
117 3zyw_A Glutaredoxin-3; metal b 50.2 50 0.0017 28.3 7.5 32 441-472 15-49 (111)
118 2vsy_A XCC0866; transferase, g 49.3 2.2E+02 0.0075 29.9 14.0 96 417-542 388-485 (568)
119 3h5o_A Transcriptional regulat 49.3 2E+02 0.0068 28.2 15.4 130 441-598 62-205 (339)
120 3msz_A Glutaredoxin 1; alpha-b 48.2 48 0.0016 25.8 6.7 44 443-491 5-49 (89)
121 2hsg_A Glucose-resistance amyl 48.0 2E+02 0.007 27.9 12.7 128 441-597 60-205 (332)
122 3gyb_A Transcriptional regulat 47.9 78 0.0027 29.8 9.3 126 441-597 5-143 (280)
123 3ipz_A Monothiol glutaredoxin- 47.3 60 0.0021 27.5 7.6 32 441-472 17-51 (109)
124 3s3t_A Nucleotide-binding prot 46.7 41 0.0014 28.6 6.5 65 457-540 71-146 (146)
125 1tjy_A Sugar transport protein 46.6 1.3E+02 0.0044 29.4 10.9 84 442-541 4-93 (316)
126 3bil_A Probable LACI-family tr 46.5 2.3E+02 0.0078 28.0 13.3 130 441-598 66-212 (348)
127 3hs3_A Ribose operon repressor 45.5 2E+02 0.0069 27.1 12.5 125 440-597 9-149 (277)
128 3tov_A Glycosyl transferase fa 45.5 34 0.0012 34.8 6.7 87 424-543 204-290 (349)
129 3bbl_A Regulatory protein of L 45.2 96 0.0033 29.5 9.5 129 441-598 4-153 (287)
130 2qv7_A Diacylglycerol kinase D 44.2 39 0.0013 34.3 6.9 85 442-544 25-117 (337)
131 4fn4_A Short chain dehydrogena 42.5 66 0.0023 31.8 8.0 27 441-469 6-32 (254)
132 3fys_A Protein DEGV; fatty aci 41.9 70 0.0024 32.9 8.3 45 443-492 36-87 (315)
133 3fg9_A Protein of universal st 41.7 35 0.0012 29.6 5.3 67 457-540 81-156 (156)
134 2o20_A Catabolite control prot 40.3 2.7E+02 0.0092 27.1 13.7 129 441-598 63-208 (332)
135 2eq5_A 228AA long hypothetical 38.4 33 0.0011 32.5 5.0 93 441-539 6-103 (228)
136 1byk_A Protein (trehalose oper 38.0 2.4E+02 0.0084 26.0 13.6 126 442-598 3-144 (255)
137 2dum_A Hypothetical protein PH 37.9 69 0.0023 28.2 6.7 42 503-544 111-159 (170)
138 2ioy_A Periplasmic sugar-bindi 36.8 2.7E+02 0.0094 26.2 12.4 82 443-540 3-89 (283)
139 2gm3_A Unknown protein; AT3G01 36.8 51 0.0017 29.3 5.7 68 458-543 90-165 (175)
140 3o74_A Fructose transport syst 36.6 1.4E+02 0.0047 27.8 8.9 120 441-578 120-245 (272)
141 3uhf_A Glutamate racemase; str 36.3 57 0.002 32.9 6.5 91 437-540 20-117 (274)
142 2o6l_A UDP-glucuronosyltransfe 36.1 1.4E+02 0.0047 26.2 8.4 77 509-594 86-166 (170)
143 3e61_A Putative transcriptiona 35.7 1.5E+02 0.0051 27.8 9.1 80 441-540 8-93 (277)
144 1jye_A Lactose operon represso 35.6 2.4E+02 0.0082 27.8 11.0 129 441-598 61-207 (349)
145 8abp_A L-arabinose-binding pro 35.6 2.5E+02 0.0086 26.5 10.8 82 442-540 3-89 (306)
146 3gx8_A Monothiol glutaredoxin- 35.2 73 0.0025 27.8 6.3 30 441-470 15-47 (121)
147 2h3h_A Sugar ABC transporter, 35.1 69 0.0024 31.0 6.8 120 441-578 123-249 (313)
148 3s81_A Putative aspartate race 34.8 45 0.0015 33.4 5.5 92 442-540 27-129 (268)
149 1jx6_A LUXP protein; protein-l 34.5 3.3E+02 0.011 26.4 14.7 101 423-539 19-134 (342)
150 2dri_A D-ribose-binding protei 34.4 2.9E+02 0.01 25.8 14.6 131 442-598 2-151 (271)
151 3tnj_A Universal stress protei 33.5 60 0.0021 27.7 5.5 41 503-543 103-149 (150)
152 3qk7_A Transcriptional regulat 32.9 3.3E+02 0.011 25.9 11.9 128 441-598 6-154 (294)
153 2dt8_A DEGV family protein; fa 32.2 1.8E+02 0.0061 29.1 9.4 45 443-492 2-53 (280)
154 1f0k_A MURG, UDP-N-acetylgluco 32.0 3.6E+02 0.012 26.1 11.9 117 443-594 214-335 (364)
155 2wem_A Glutaredoxin-related pr 31.9 1.3E+02 0.0045 26.1 7.4 31 442-472 20-54 (118)
156 3uug_A Multiple sugar-binding 31.7 3.5E+02 0.012 25.9 15.1 85 441-541 3-92 (330)
157 3r5x_A D-alanine--D-alanine li 31.6 15 0.00053 36.0 1.4 80 442-543 4-91 (307)
158 2yan_A Glutaredoxin-3; oxidore 31.2 1.2E+02 0.004 25.1 6.7 30 443-472 18-50 (105)
159 1gud_A ALBP, D-allose-binding 31.0 2.1E+02 0.0072 27.2 9.4 136 442-597 2-160 (288)
160 1nvm_A HOA, 4-hydroxy-2-oxoval 30.9 51 0.0017 34.0 5.2 40 450-491 115-155 (345)
161 3dzc_A UDP-N-acetylglucosamine 30.3 78 0.0027 32.7 6.5 30 509-539 111-141 (396)
162 2oho_A Glutamate racemase; iso 30.3 43 0.0015 33.3 4.4 89 442-540 13-105 (273)
163 3loq_A Universal stress protei 29.9 2.1E+02 0.0073 27.4 9.3 72 453-543 212-292 (294)
164 3imi_A HIT family protein; str 29.4 41 0.0014 30.3 3.7 81 59-139 5-87 (147)
165 2h0a_A TTHA0807, transcription 29.3 2.7E+02 0.0092 25.9 9.7 124 444-598 2-147 (276)
166 1wik_A Thioredoxin-like protei 28.6 1.1E+02 0.0038 25.5 6.2 31 442-472 15-48 (109)
167 1o97_C Electron transferring f 28.4 84 0.0029 31.4 6.2 82 442-538 58-144 (264)
168 3dlo_A Universal stress protei 28.2 1.1E+02 0.0037 26.9 6.3 66 457-539 80-154 (155)
169 3mt0_A Uncharacterized protein 28.1 90 0.0031 30.1 6.2 75 451-543 47-130 (290)
170 3p0t_A Uncharacterized protein 27.6 1.6E+02 0.0056 25.8 7.4 74 64-137 6-81 (138)
171 3s40_A Diacylglycerol kinase; 26.2 66 0.0023 32.2 5.0 84 442-544 9-100 (304)
172 3k4h_A Putative transcriptiona 25.6 2.2E+02 0.0076 26.7 8.4 119 441-578 131-258 (292)
173 3nyi_A FAT acid-binding protei 25.6 1.2E+02 0.0042 30.6 6.9 46 442-492 3-56 (297)
174 2jfq_A Glutamate racemase; cel 25.5 49 0.0017 33.2 3.9 88 442-540 23-115 (286)
175 1efv_B Electron transfer flavo 25.3 1.6E+02 0.0053 29.4 7.5 80 442-539 60-149 (255)
176 2wci_A Glutaredoxin-4; redox-a 25.2 1.9E+02 0.0065 25.8 7.4 30 443-472 36-68 (135)
177 3jvd_A Transcriptional regulat 24.8 4.9E+02 0.017 25.4 13.4 124 441-598 64-202 (333)
178 1aba_A Glutaredoxin; electron 24.5 1.3E+02 0.0043 23.9 5.5 20 453-472 13-32 (87)
179 3qvl_A Putative hydantoin race 24.3 65 0.0022 31.7 4.4 85 442-537 110-201 (245)
180 3qvl_A Putative hydantoin race 24.3 73 0.0025 31.3 4.8 50 487-539 48-97 (245)
181 4g81_D Putative hexonate dehyd 24.0 1.4E+02 0.0047 29.5 6.7 28 441-470 8-35 (255)
182 1efp_B ETF, protein (electron 23.9 1.3E+02 0.0044 29.9 6.5 80 442-539 57-146 (252)
183 3s2u_A UDP-N-acetylglucosamine 23.4 4.9E+02 0.017 26.1 11.0 77 510-592 253-334 (365)
184 1q77_A Hypothetical protein AQ 23.4 1.1E+02 0.0038 25.7 5.3 36 503-540 103-138 (138)
185 3lb5_A HIT-like protein involv 23.2 1.4E+02 0.0048 27.4 6.2 76 64-139 29-106 (161)
186 3ctp_A Periplasmic binding pro 23.1 5.2E+02 0.018 25.0 13.5 125 441-597 60-199 (330)
187 3qmx_A Glutaredoxin A, glutare 23.1 3.2E+02 0.011 22.5 8.0 30 441-472 15-44 (99)
188 3olq_A Universal stress protei 23.0 1.3E+02 0.0045 29.1 6.4 70 457-543 75-152 (319)
189 1psw_A ADP-heptose LPS heptosy 22.8 45 0.0015 33.0 2.9 88 424-541 200-288 (348)
190 1zuw_A Glutamate racemase 1; ( 22.4 73 0.0025 31.7 4.4 86 443-539 5-96 (272)
191 2l2q_A PTS system, cellobiose- 22.2 1.9E+02 0.0064 24.6 6.5 36 442-479 5-44 (109)
192 3fdx_A Putative filament prote 21.9 89 0.003 26.3 4.3 36 503-540 100-143 (143)
193 2qh8_A Uncharacterized protein 21.8 1.3E+02 0.0046 29.0 6.1 82 441-540 8-97 (302)
194 1mkz_A Molybdenum cofactor bio 21.7 3.7E+02 0.013 24.7 8.9 84 441-539 10-102 (172)
195 2vvt_A Glutamate racemase; iso 21.7 63 0.0022 32.5 3.8 87 443-540 26-117 (290)
196 3lkv_A Uncharacterized conserv 21.3 1.5E+02 0.005 29.2 6.3 84 441-541 8-98 (302)
197 4hwg_A UDP-N-acetylglucosamine 21.2 1.3E+02 0.0045 31.1 6.2 85 443-540 38-124 (385)
198 2bon_A Lipid kinase; DAG kinas 21.1 1.3E+02 0.0046 30.3 6.2 83 443-543 31-120 (332)
199 1x60_A Sporulation-specific N- 20.9 97 0.0033 24.6 4.1 53 439-491 5-63 (79)
200 3out_A Glutamate racemase; str 20.7 71 0.0024 31.9 3.9 87 442-539 8-100 (268)
201 2z08_A Universal stress protei 20.6 1.7E+02 0.006 24.4 5.9 38 503-540 93-137 (137)
202 2gt1_A Lipopolysaccharide hept 20.3 54 0.0019 32.3 3.0 83 424-540 197-279 (326)
203 3gbv_A Putative LACI-family tr 20.1 1.1E+02 0.0039 28.8 5.1 114 442-578 136-265 (304)
No 1
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-116 Score=938.69 Aligned_cols=410 Identities=48% Similarity=0.811 Sum_probs=353.2
Q ss_pred cccCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcce
Q psy246 7 LTKNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTK 86 (615)
Q Consensus 7 ~~m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~k 86 (615)
..|+++++|||||+|+||+++++|+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 5 ~~m~~~~~lyeGKvK~vY~~~d~~~~ll~~~kDriSAfD~~~~~~IpgKG~vln~iS~~~F~~L~--------------- 69 (425)
T 2h31_A 5 EVLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQ--------------- 69 (425)
T ss_dssp --CCCCCCCCBCSSCEEECCTTSCSSCEEEEC---------------CCHHHHHHHHHHHHHHHH---------------
T ss_pred cccccCCccccCCCeEEeccCCCCCEEEEEEeCCCCCCCcccCCCcCcccHHHHHHHHHHHHHHH---------------
Confidence 56778899999999999996467899999999999999999999999999999999999999887
Q ss_pred eeeecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccc
Q psy246 87 KIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELM 166 (615)
Q Consensus 87 kry~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~ 166 (615)
+.| |+|
T Consensus 70 --------------------------------------------------~~g---------------------ipt--- 75 (425)
T 2h31_A 70 --------------------------------------------------EAG---------------------IKT--- 75 (425)
T ss_dssp --------------------------------------------------HHT---------------------CCB---
T ss_pred --------------------------------------------------hCC---------------------CCc---
Confidence 224 677
Q ss_pred ccccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccc
Q psy246 167 KDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECY 246 (615)
Q Consensus 167 lDKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~ 246 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+||+|++||+
T Consensus 76 ----------------------H~---------i-----~~~~~r~~lvkk~~~iPlEvVvR~~atGS~~kry~gl~eg~ 119 (425)
T 2h31_A 76 ----------------------AF---------T-----RKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGY 119 (425)
T ss_dssp ----------------------SC---------C-----EECSSSEEEECCEEECSCEEEEESBCCHHHHHHSTTCCTTC
T ss_pred ----------------------eE---------e-----eccCCCeEEEEEccEeeEEEEEEeeeechhHHhccCCCCCC
Confidence 88 6 45689999999999999999999999999999999999999
Q ss_pred cCCCCceeeeecCCCCCCCCCCHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCC
Q psy246 247 RFCPPCQETFFKDDANHDPQWSDEQILSANLD----NVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNE 322 (615)
Q Consensus 247 ~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~----~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~ 322 (615)
+|++|++||+||+|++|||+||++|+.++|+. .++++|++.|+++|++||++++++|+++|++|||||||||+
T Consensus 120 ~l~~Pi~e~~~K~d~~hDp~Is~e~~~~~g~~~~~~~i~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~--- 196 (425)
T 2h31_A 120 KFYPPKVELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGV--- 196 (425)
T ss_dssp BCSSCCEEEESCCCSSCCCCBCHHHHHTTTCEETTEECCHHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEECEEE---
T ss_pred cCCCCeeeeEeecccCCCCCCCHHHHHHcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE---
Confidence 99999999999999999999999999998864 35999999999999999999999999999999999999994
Q ss_pred CCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeec-CCCCEEEEecccCCCcccccCCCccc
Q psy246 323 GKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGID-NEGNILVSDVIDSDSWRLWPEGKKEL 401 (615)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~-~~g~ivLaD~itpDs~Rlw~~~~~~~ 401 (615)
+ .+|+|+|+|||||||||||+.++++.
T Consensus 197 ----------------------------------------------------~~~~G~ivLaDeitPDs~R~W~~~~~~~ 224 (425)
T 2h31_A 197 ----------------------------------------------------DVTTKEIVLADVIDNDSWRLWPSGDRSQ 224 (425)
T ss_dssp ----------------------------------------------------ETTTCCEEECSCCCTTSEEEECCC----
T ss_pred ----------------------------------------------------ecCCCeEEEEEeeCCCccccccCCCCCC
Confidence 5 47999999999999999999998777
Q ss_pred ccccccccccccccccccchhhhhHHHHHHHhhccc-CCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEeccc
Q psy246 402 MKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVK-RPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANL 479 (615)
Q Consensus 402 ~~DKq~~R~~~~~~~~~l~~VkenY~eVA~~L~~~k-~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR 479 (615)
++|||+||+|..+++.+|++|.++|+|+++++.... ++..++|+|+|||+||+|+|++|+.+|++||++|+ +|+||||
T Consensus 225 ~~DK~~~R~~~~~~~~~l~~v~~~Y~eVa~rL~i~~~~~~~~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR 304 (425)
T 2h31_A 225 QKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHK 304 (425)
T ss_dssp --------------CCSSSCCCCCHHHHHTTGGGGGSCSCCCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred cccHHHHHhccccchhhHHHHHHHHHHHHHHhhcccCccCCCeEEEEecCcccHHHHHHHHHHHHHcCCceEEeeeeccC
Confidence 899999999999999999999999999999997753 33458999999999999999999999999999999 9999999
Q ss_pred CCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcCCC
Q psy246 480 DNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNLPA 557 (615)
Q Consensus 480 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqmp~ 557 (615)
+|+++.+|+ ++++.+|++.||||+|||+|||||||||+|++||||||++.+ |+|+||||||||+
T Consensus 305 ---~p~~~~~~~-----------~~~~~~g~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~G~daLls~vqmp~ 370 (425)
T 2h31_A 305 ---GPDETLRIK-----------AEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPS 370 (425)
T ss_dssp ---CHHHHHHHH-----------HHHHTTCCCEEEEEECCSSCCHHHHHHHHCSSCEEECCCCCTTTHHHHGGGTSSCCS
T ss_pred ---CHHHHHHHH-----------HHHHHCCCCeEEEEEcCcccchHhHHhccCCCCEEEeeCccccccHHHHHHHhcCCC
Confidence 999999999 999999995599999999999999999999999999999765 9999999999999
Q ss_pred CceeeeecChhhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy246 558 GIACSTVTAPSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQE 610 (615)
Q Consensus 558 Gv~v~tv~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~~~~~~~~d~~l~~~ 610 (615)
|+||+||++|+|||++|+|||++.|+.||+||+.||.++++++.++|++|+..
T Consensus 371 g~pvatv~~~~nAa~~A~~Il~~~~~~l~~kl~~~~~~~~~~v~~~~~~l~~~ 423 (425)
T 2h31_A 371 GLGCSTVLSPEGSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKIREC 423 (425)
T ss_dssp SCCCEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEecCchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999865
No 2
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Probab=100.00 E-value=3.4e-67 Score=531.41 Aligned_cols=235 Identities=29% Similarity=0.448 Sum_probs=218.0
Q ss_pred cCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceee
Q psy246 9 KNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKI 88 (615)
Q Consensus 9 m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkr 88 (615)
|+++++|||||+|+||++ +||+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 22 m~~~~~lyeGKvK~vY~~-~d~~~ll~~~kDriSAfD~~~~~~IpgKG~~ln~iS~~~F~~L~----------------- 83 (263)
T 3kre_A 22 MENKEKIYEGKAKIIFAT-LNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKKLI----------------- 83 (263)
T ss_dssp ----CEEEECSSEEEEEC-SSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHH-----------------
T ss_pred cccCcccccccceEEEEC-CCCCEEEEEEeCCCcCccccccCCcCcHhHHHHHHHHHHHHHHH-----------------
Confidence 778899999999999999 78999999999999999999999999999999999999999998
Q ss_pred eecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccc
Q psy246 89 HLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKD 168 (615)
Q Consensus 89 y~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lD 168 (615)
++| |+|
T Consensus 84 ------------------------------------------------~~G---------------------Ipt----- 89 (263)
T 3kre_A 84 ------------------------------------------------DKG---------------------IKT----- 89 (263)
T ss_dssp ------------------------------------------------HTT---------------------CCB-----
T ss_pred ------------------------------------------------hCC---------------------CCc-----
Confidence 445 778
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccC
Q psy246 169 KQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRF 248 (615)
Q Consensus 169 Kd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l 248 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|++|
T Consensus 90 --------------------Hf---------i-----~~~~~r~~lvkk~~~iPlEvVvR~~aaGS~~kr~-Gl~eg~~L 134 (263)
T 3kre_A 90 --------------------HF---------I-----SLLNQREQLVKKITIIPIEVVIRNLAAGNFSKRF-QIADGTPF 134 (263)
T ss_dssp --------------------SE---------E-----EECSSSEEEEECEEECSEEEEEEEECCHHHHHHH-TCCTTCEE
T ss_pred --------------------ee---------e-----cccCCCeEEEEEcccccEEEEEeeeecchhhhhc-CCcccccC
Confidence 88 6 5678999999999999999999999999999997 89999999
Q ss_pred CCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccC
Q psy246 249 CPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF 328 (615)
Q Consensus 249 ~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~ 328 (615)
++|++||+||+|++|||+||++++.++|+ +++++++.|+++|++||++++++|+++|++|||||||||+
T Consensus 135 ~~Pive~~~K~d~~hDp~Is~~~~~~lg~--~~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~--------- 203 (263)
T 3kre_A 135 KSPIIEFYYKNDELSDPMVSEGHILSFQW--LTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGK--------- 203 (263)
T ss_dssp EEEEEEEEECCTTTTCCEECHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEE---------
T ss_pred CCCeEEEEecCcccCCCCCCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeeE---------
Confidence 99999999999999999999999999884 9999999999999999999999999999999999999994
Q ss_pred CCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCC---CEEEEecccCCCcccccCCCccccccc
Q psy246 329 PQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEG---NILVSDVIDSDSWRLWPEGKKELMKDK 405 (615)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g---~ivLaD~itpDs~Rlw~~~~~~~~~DK 405 (615)
+.+| +|+|+|||||||||||++++++ ++||
T Consensus 204 ----------------------------------------------d~~G~~~~ivL~DEItPDs~R~Wd~~~~~-~lDK 236 (263)
T 3kre_A 204 ----------------------------------------------LHNDEQSDLFLADEISPDTCRLWDISTNK-RLDK 236 (263)
T ss_dssp ----------------------------------------------ETTCTTCCCEECSCCSTTTEEEEETTTCC-BCST
T ss_pred ----------------------------------------------eCCCCcceEEEEEeeCCCcccceECCCCC-ccCH
Confidence 4466 9999999999999999999887 5799
Q ss_pred ccccccccccccccchhhhhHHHHHHHhhc
Q psy246 406 QVYRNLSNVTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 406 q~~R~~~~~~~~~l~~VkenY~eVA~~L~~ 435 (615)
|+||+ +|++|.++|+||++|+..
T Consensus 237 d~fR~-------~lg~v~~~Y~ev~~rl~~ 259 (263)
T 3kre_A 237 DRYRL-------NLGNVIEGYREVAHKLNA 259 (263)
T ss_dssp HHHHT-------TCSCHHHHHHHHHHHHTC
T ss_pred HHHHh-------cchhHHHHHHHHHHHhcc
Confidence 99996 688999999999999975
No 3
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A*
Probab=100.00 E-value=4.6e-67 Score=524.51 Aligned_cols=233 Identities=29% Similarity=0.488 Sum_probs=219.4
Q ss_pred cCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceee
Q psy246 9 KNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKI 88 (615)
Q Consensus 9 m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkr 88 (615)
|+++++|||||+|+||++ ++|+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 1 m~~~~~lyeGK~K~vY~~-~d~~~ll~~~kDr~sAfd~~~~~~I~gKG~~~~~iS~~~F~~L~----------------- 62 (237)
T 2gqr_A 1 MQKQAELYRGKAKTVYST-ENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLA----------------- 62 (237)
T ss_dssp CCCCEEEEECSSEEEEEC-SSTTEEEEEECSEECCTTTTCCEECTTHHHHHHHHHHHHHHHHH-----------------
T ss_pred CCCCCccccCCCeEEEEC-CCCCEEEEEEeCCCcccccccCCCCCChHHHHHHHHHHHHHHHH-----------------
Confidence 667899999999999999 78999999999999999999999999999999999999999998
Q ss_pred eecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccc
Q psy246 89 HLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKD 168 (615)
Q Consensus 89 y~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lD 168 (615)
+.| |+|
T Consensus 63 ------------------------------------------------~~g---------------------ipt----- 68 (237)
T 2gqr_A 63 ------------------------------------------------EAG---------------------IPT----- 68 (237)
T ss_dssp ------------------------------------------------HTT---------------------CCB-----
T ss_pred ------------------------------------------------hcC---------------------CCc-----
Confidence 345 778
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccC
Q psy246 169 KQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRF 248 (615)
Q Consensus 169 Kd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l 248 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|++|
T Consensus 69 --------------------H~---------i-----~~~~~~~~lvkk~~~iPlEvVvR~~a~GS~~kry-Gl~eg~~L 113 (237)
T 2gqr_A 69 --------------------QM---------E-----RLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRL-GIEEGIEL 113 (237)
T ss_dssp --------------------CE---------E-----EECSSSEEEEECCEECSEEEEEEEECCHHHHHHH-CCCTTCEE
T ss_pred --------------------eE---------E-----eeeCCCEEEEEEcceeeEEEEEEeeeccchHHhc-CCccccCC
Confidence 88 6 5678999999999999999999999999999998 89999999
Q ss_pred CCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccC
Q psy246 249 CPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF 328 (615)
Q Consensus 249 ~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~ 328 (615)
++|++||+||+|++|||+||++++.++|+ +++++++.|+++|++||++++++|+++||+|||||||||
T Consensus 114 ~~Pi~e~~~K~d~~~Dp~I~~~~~~~~~~--~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG---------- 181 (237)
T 2gqr_A 114 NPPLFDLFLKNDAMHDPMVNESYCETFGW--VSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFG---------- 181 (237)
T ss_dssp EEEEEEEEECCGGGTCCEECHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE----------
T ss_pred CCCEEEeeecCCcCCCCCCCHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE----------
Confidence 99999999999999999999999999884 999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcccccccccc
Q psy246 329 PQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVY 408 (615)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~ 408 (615)
++ +|+|+|+|||||||||||++++++ ++|||+|
T Consensus 182 ---------------------------------------------~~-~G~ivL~DEItPDs~R~W~~~~~~-~~DK~~~ 214 (237)
T 2gqr_A 182 ---------------------------------------------LY-KGEVVLGDEFSPDGSRLWDKETLE-KMDKDRF 214 (237)
T ss_dssp ---------------------------------------------EE-TTEEEEESCCSTTSEEEEETTTCC-BCSTHHH
T ss_pred ---------------------------------------------eE-CCEEEEEEEecCCccccccCCCCc-ccCHHHH
Confidence 34 799999999999999999999876 6899999
Q ss_pred cccccccccccchhhhhHHHHHHHhh
Q psy246 409 RNLSNVTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 409 R~~~~~~~~~l~~VkenY~eVA~~L~ 434 (615)
|+ +|+++.++|.|+++++.
T Consensus 215 R~-------~l~~~~~~Y~ev~~rl~ 233 (237)
T 2gqr_A 215 RQ-------SLGGLIEAYEAVARRLG 233 (237)
T ss_dssp HT-------TCCCHHHHHHHHHHHHT
T ss_pred HH-------hHHHHHHHHHHHHHHHh
Confidence 97 47789999999999984
No 4
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} SCOP: d.143.1.0
Probab=100.00 E-value=6.2e-67 Score=523.86 Aligned_cols=234 Identities=29% Similarity=0.468 Sum_probs=219.3
Q ss_pred ccCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCccee
Q psy246 8 TKNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKK 87 (615)
Q Consensus 8 ~m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kk 87 (615)
+|+++++|||||+|+||++ ++|+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 4 ~m~~~~~lyeGK~K~vY~~-~d~~~ll~~~kDriSAfD~~~~~~I~gKG~v~~~iS~~~F~~L~---------------- 66 (238)
T 3nua_A 4 MVNQLEMLYEGKAKKIYAT-DKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLN---------------- 66 (238)
T ss_dssp CCCEEEEEEECSSEEEEEE-SSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHH----------------
T ss_pred hhcccCccccccceEEEEc-CCCCEEEEEEeCCCcCcccccCCCcCcHhHHHHHHHHHHHHHHH----------------
Confidence 4788999999999999999 78999999999999999999999999999999999999999887
Q ss_pred eeecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccc
Q psy246 88 IHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMK 167 (615)
Q Consensus 88 ry~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~l 167 (615)
+.| |+|
T Consensus 67 -------------------------------------------------~~g---------------------Ipt---- 72 (238)
T 3nua_A 67 -------------------------------------------------KEG---------------------IKT---- 72 (238)
T ss_dssp -------------------------------------------------HTT---------------------CCB----
T ss_pred -------------------------------------------------HCC---------------------CCC----
Confidence 334 677
Q ss_pred cccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCccccc
Q psy246 168 DKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYR 247 (615)
Q Consensus 168 DKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~ 247 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|++
T Consensus 73 ---------------------H~---------i-----~~~~~~~~lvkk~~~iPlEvVvR~~a~GS~~kry-Gl~eg~~ 116 (238)
T 3nua_A 73 ---------------------HF---------V-----EKLNDRDQLCKKVEIVPLEVIVRNVAAGSMAKRL-GLEEGYE 116 (238)
T ss_dssp ---------------------SE---------E-----EECSSSEEEEECCEECSEEEEEEEEECHHHHHHH-TCCTTEE
T ss_pred ---------------------ce---------e-----cccCCCeEEEEEeeeeeEEEEEeeeecccchhhc-CCccccc
Confidence 88 6 5568999999999999999999999999999998 8999999
Q ss_pred CCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCccc
Q psy246 248 FCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSF 327 (615)
Q Consensus 248 l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~ 327 (615)
|++|++||+||+|++|||+||++++.++|+ +++++++.|+++|++||++++++|+++|++|||||||||
T Consensus 117 L~~Pi~e~~~K~d~~~Dp~i~~~~~~~~g~--~~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG--------- 185 (238)
T 3nua_A 117 LKTTVFELSYKDDSLGDPLINDYHAVGIGA--TTFEELNKIYEITAKVNEILKEAFKKQNINLIDFKLEFG--------- 185 (238)
T ss_dssp EEEEEEEEEECCGGGTCCEECHHHHHHTTS--CCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE---------
T ss_pred CCCCeEEEeecCCCCCCCCCCHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeE---------
Confidence 999999999999999999999999999885 899999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCccccccccc
Q psy246 328 FPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQV 407 (615)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~ 407 (615)
++ +|+|+|+|||||||||||++++++ ++|||+
T Consensus 186 ----------------------------------------------~~-~g~ivL~DEitPDs~R~W~~~~~~-~~DKd~ 217 (238)
T 3nua_A 186 ----------------------------------------------RY-NGEILLADEISPDTCRFWDATTGE-KMDKDR 217 (238)
T ss_dssp ----------------------------------------------EE-TTEEEEESCCSTTTEEEEETTTCC-BCSTHH
T ss_pred ----------------------------------------------EE-CCEEEEEEeeCCCcccccCCCCCc-ccChHH
Confidence 45 799999999999999999998765 689999
Q ss_pred ccccccccccccchhhhhHHHHHHHhh
Q psy246 408 YRNLSNVTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 408 ~R~~~~~~~~~l~~VkenY~eVA~~L~ 434 (615)
||+ +|++|.++|++|++|+.
T Consensus 218 ~R~-------~lg~v~~~Y~ev~~rl~ 237 (238)
T 3nua_A 218 FRR-------DMGNVINGYREVLNRLR 237 (238)
T ss_dssp HHT-------TCSCHHHHHHHHHHHHT
T ss_pred Hhh-------ccchHHHHHHHHHHHhh
Confidence 995 68999999999999984
No 5
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus}
Probab=100.00 E-value=9.2e-67 Score=524.25 Aligned_cols=236 Identities=34% Similarity=0.531 Sum_probs=220.3
Q ss_pred cccCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcce
Q psy246 7 LTKNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTK 86 (615)
Q Consensus 7 ~~m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~k 86 (615)
|+| ++++|||||+|+||++ ++|+.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 3 ~~m-~~~~lyeGK~K~vY~~-~d~~~ll~~~kDrisAfd~~~~~~I~gKG~~~n~iS~~~F~~L~--------------- 65 (244)
T 2ywv_A 3 MPT-KQQLLYEGKAKKIYAT-DEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLR--------------- 65 (244)
T ss_dssp CCC-EEEEEEECSSEEEEEE-SSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHH---------------
T ss_pred Ccc-cccccccccCeEEEEC-CCCCEEEEEEcCCccccccccCCCCCChhHHHHHHHHHHHHHHH---------------
Confidence 457 7899999999999999 78999999999999999999999999999999999999999998
Q ss_pred eeeecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccc
Q psy246 87 KIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELM 166 (615)
Q Consensus 87 kry~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~ 166 (615)
+.| |+|
T Consensus 66 --------------------------------------------------~~g---------------------ipt--- 71 (244)
T 2ywv_A 66 --------------------------------------------------EAG---------------------IAN--- 71 (244)
T ss_dssp --------------------------------------------------HTT---------------------CCB---
T ss_pred --------------------------------------------------hCC---------------------CCc---
Confidence 345 788
Q ss_pred ccccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccc
Q psy246 167 KDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECY 246 (615)
Q Consensus 167 lDKd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~ 246 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|+
T Consensus 72 ----------------------H~---------i-----~~~~~~~~lvkk~~~iPlEvVvR~~aaGS~~kry-Gl~eg~ 114 (244)
T 2ywv_A 72 ----------------------HF---------I-----EKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRI-GLEEGT 114 (244)
T ss_dssp ----------------------SE---------E-----EECSSSEEEEECCEECSEEEEEEEEECHHHHHHH-TCCTTE
T ss_pred ----------------------eE---------e-----cccCCCEEEEEEcccccEEEEEEeeeccccHHhc-CCccCc
Confidence 88 6 5678999999999999999999999999999998 799999
Q ss_pred cCCCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcc
Q psy246 247 RFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVS 326 (615)
Q Consensus 247 ~l~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~ 326 (615)
+|++|++||+||+|++|||+||++++.++|+ +++++++.|+++|++||++++++|+++||+|||||||||+
T Consensus 115 ~L~~Pi~e~~~K~d~~~Dp~I~~~~~~~~~~--~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~------- 185 (244)
T 2ywv_A 115 PLEAPLVEFYYKNDDLGDPLLLEDHIFILKL--ASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGR------- 185 (244)
T ss_dssp EEEEEEEEEEECCGGGTCCEECHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEE-------
T ss_pred CCCCCEEEEEecCCcCCCCCCCHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE-------
Confidence 9999999999999999999999999999884 8999999999999999999999999999999999999994
Q ss_pred cCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcccccccc
Q psy246 327 FFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQ 406 (615)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq 406 (615)
+.+|+|+|+|||||||||||++++++ ++|||
T Consensus 186 ------------------------------------------------~~~G~ivL~DEItPDs~R~W~~~~~~-~~DK~ 216 (244)
T 2ywv_A 186 ------------------------------------------------TADGAILLADEISPDTCRLWDAKTNE-KLDKD 216 (244)
T ss_dssp ------------------------------------------------CTTSCEEECSCCSTTTEEEEETTTCC-BCSTH
T ss_pred ------------------------------------------------cCCCCEEEEeeecCCcceeeeCCCCc-ccCHH
Confidence 45799999999999999999998865 68999
Q ss_pred cccccccccccccchhhhhHHHHHHHhhc
Q psy246 407 VYRNLSNVTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 407 ~~R~~~~~~~~~l~~VkenY~eVA~~L~~ 435 (615)
+||+| |++|.++|.|++++++.
T Consensus 217 ~~R~~-------l~~v~~~Y~ev~~rl~g 238 (244)
T 2ywv_A 217 VFRRD-------LGSLTDAYEVILQRLGG 238 (244)
T ss_dssp HHHTT-------CSCHHHHHHHHHHHTTC
T ss_pred HHHhh-------HHHHHHHHHHHHHHHhC
Confidence 99974 66788999999999954
No 6
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A*
Probab=100.00 E-value=2.7e-66 Score=520.35 Aligned_cols=233 Identities=31% Similarity=0.537 Sum_probs=218.3
Q ss_pred cCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceee
Q psy246 9 KNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKI 88 (615)
Q Consensus 9 m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkr 88 (615)
++++++|||||+|+||++ +| +.++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 8 ~~~~~~lyeGK~K~vY~~-~d-~~ll~~~kDrisAfd~~~~~~I~gKG~~~n~iS~~~F~~L~----------------- 68 (242)
T 2z02_A 8 ILKKQPLYSGKAKSIYEI-DD-DKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEALE----------------- 68 (242)
T ss_dssp HTTSCCSEECSSEEEEEC-SS-SEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHH-----------------
T ss_pred hhccCeeecccCeEEEEc-CC-CEEEEEEeCCCcccccccCCCCCchHHHHHHHHHHHHHHHH-----------------
Confidence 567899999999999999 45 89999999999999999999999999999999999999998
Q ss_pred eecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccc
Q psy246 89 HLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKD 168 (615)
Q Consensus 89 y~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lD 168 (615)
+.| |+|
T Consensus 69 ------------------------------------------------~~g---------------------ipt----- 74 (242)
T 2z02_A 69 ------------------------------------------------ENG---------------------VKT----- 74 (242)
T ss_dssp ------------------------------------------------HTT---------------------CCB-----
T ss_pred ------------------------------------------------hCC---------------------CCc-----
Confidence 345 788
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccC
Q psy246 169 KQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRF 248 (615)
Q Consensus 169 Kd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l 248 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|++|
T Consensus 75 --------------------H~---------i-----~~~~~~~~lvkk~~~iPlEvVvR~~aaGS~~kry-Gl~eg~~L 119 (242)
T 2z02_A 75 --------------------HY---------I-----KYIEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRY-PFEEGKEL 119 (242)
T ss_dssp --------------------SE---------E-----EEETTTEEEEECEEECSEEEEEEEECCTHHHHHS-SCCTTCEE
T ss_pred --------------------eE---------E-----eEeCCCEEEEEECccceEEEEEeeeeccccHHhc-CCccCcCC
Confidence 88 6 5678999999999999999999999999999998 79999999
Q ss_pred CCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccC
Q psy246 249 CPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF 328 (615)
Q Consensus 249 ~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~ 328 (615)
++|++||+||+|++|||+||++|+.++|+ +++++++.|+++|++||++++++|+++|++|||||||||+
T Consensus 120 ~~Pi~e~~~K~d~~~Dp~Is~~~~~~~~~--~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~--------- 188 (242)
T 2z02_A 120 PFPIVQFDYKNDEYGDPMLNEDIAVALGL--ATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGK--------- 188 (242)
T ss_dssp EEEEEEEEECCGGGTCCBCCHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEE---------
T ss_pred CCCEEEEEecCCcCCCCccCHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE---------
Confidence 99999999999999999999999999885 9999999999999999999999999999999999999994
Q ss_pred CCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcccccccccc
Q psy246 329 PQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVY 408 (615)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~ 408 (615)
+.+|+|+|+|||||||||||++++++ ++|||+|
T Consensus 189 ----------------------------------------------~~~G~ivL~DEItPDs~R~W~~~~~~-~~DK~~~ 221 (242)
T 2z02_A 189 ----------------------------------------------DREGNLLVADEISPDTMRLWDKETRD-VLDKDVF 221 (242)
T ss_dssp ----------------------------------------------ETTCCEEECSCCSTTTEEEEETTTCC-BCSTHHH
T ss_pred ----------------------------------------------cCCCCEEEEEeecCCccccccCCCCC-ccCHHHH
Confidence 56799999999999999999998865 6899999
Q ss_pred cccccccccccchhhhhHHHHHHHhh
Q psy246 409 RNLSNVTAEGLNQVKLNFTWIADTLA 434 (615)
Q Consensus 409 R~~~~~~~~~l~~VkenY~eVA~~L~ 434 (615)
|+ +|++|.++|+||++|+.
T Consensus 222 R~-------~lg~v~~~Y~ev~~rl~ 240 (242)
T 2z02_A 222 RK-------DLGDVIAKYRIVAERLG 240 (242)
T ss_dssp HT-------TCSCHHHHHHHHHHHTT
T ss_pred Hh-------hchhHHHHHHHHHHHhh
Confidence 97 58899999999999984
No 7
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=100.00 E-value=1.3e-64 Score=504.89 Aligned_cols=226 Identities=30% Similarity=0.480 Sum_probs=193.8
Q ss_pred cccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeecCC
Q psy246 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLKS 93 (615)
Q Consensus 14 llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~lKd 93 (615)
+|||||+|+||++ +| .++++|||++|||||+++++|+|||++||+||+++|++|+
T Consensus 1 ~ly~GK~k~vY~~-~d--~ll~~~~Dr~sAfd~~~~~~I~gKG~~~~~iS~~~F~~L~---------------------- 55 (230)
T 1kut_A 1 MNYEGKTKIVKVT-GD--YALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLS---------------------- 55 (230)
T ss_dssp ------CEEEEEE-TT--EEEEEECCC-----------CCSHHHHHHHHHHHHHHHHH----------------------
T ss_pred CCccccceEEEEc-CC--EEEEEEeCCCcccccccCCCCCccCHHHHHHHHHHHHHHH----------------------
Confidence 5899999999999 44 8999999999999999999999999999999999999998
Q ss_pred CCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccccc
Q psy246 94 DPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR 173 (615)
Q Consensus 94 D~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR 173 (615)
+.| |+|
T Consensus 56 -------------------------------------------~~g---------------------ipt---------- 61 (230)
T 1kut_A 56 -------------------------------------------EKG---------------------IKT---------- 61 (230)
T ss_dssp -------------------------------------------HTT---------------------CCB----------
T ss_pred -------------------------------------------hCC---------------------CCc----------
Confidence 345 778
Q ss_pred cCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccCCCCce
Q psy246 174 NLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQ 253 (615)
Q Consensus 174 dLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l~~Pi~ 253 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|++|++|++
T Consensus 62 ---------------H~---------i-----~~~~~~~~lvkk~~~iPlEvVvR~~a~GS~~kry-Gl~eg~~L~~Pi~ 111 (230)
T 1kut_A 62 ---------------HL---------V-----EYIPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRY-GGAEGEDLPVPLV 111 (230)
T ss_dssp ---------------SE---------E-----EEETTTEEEECCCEECSEEEEEEEECCHHHHHHH-CCCTTCEEEEEEE
T ss_pred ---------------eE---------E-----eecCCCEEEEEEceeeeEEEEEEeeeccchHHhc-CCccCcCCCCCEE
Confidence 88 6 5678999999999999999999999999999998 7999999999999
Q ss_pred eeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCcc
Q psy246 254 ETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPM 333 (615)
Q Consensus 254 e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~ 333 (615)
||+||+|++|||+||++++.++|+ +++++++.|+++|++||++++++|+++|++|||||||||+
T Consensus 112 e~~~K~d~~~Dp~Is~~~~~~~~~--~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~-------------- 175 (230)
T 1kut_A 112 EFFIKDDERHDPMVCVDHLEILGI--ATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGL-------------- 175 (230)
T ss_dssp EEEECCGGGTCCBCCHHHHHHTTS--CCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECEEE--------------
T ss_pred EEEecCccCCCCCCCHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE--------------
Confidence 999999999999999999999884 9999999999999999999999999999999999999994
Q ss_pred chhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCccccccccccccccc
Q psy246 334 KLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSN 413 (615)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~R~~~~ 413 (615)
+.+|+|+|+|||||||||||+ ++ .++|||+||+
T Consensus 176 -----------------------------------------~~~G~ivL~DEItPDs~R~W~--~~-~~~DK~~~R~--- 208 (230)
T 1kut_A 176 -----------------------------------------DKDGNVVLGDEISPDTFRLRK--KG-EIFDKDVYRR--- 208 (230)
T ss_dssp -----------------------------------------CTTCCEEECSCCSTTTEEEEE--TT-CCCCHHHHHH---
T ss_pred -----------------------------------------cCCCCEEEEEeecCCcccccC--CC-cccCHHHHHH---
Confidence 457999999999999999999 32 3689999997
Q ss_pred ccccccchhhhhHHHHHHHhhc
Q psy246 414 VTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 414 ~~~~~l~~VkenY~eVA~~L~~ 435 (615)
+|++|.++|.|++++++.
T Consensus 209 ----~l~~v~~~Y~ev~~rl~g 226 (230)
T 1kut_A 209 ----DLGDPLKKYREVLELCRS 226 (230)
T ss_dssp ----GGGCTTHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHhc
Confidence 477789999999999864
No 8
>3u55_A Phosphoribosylaminoimidazole-succinocarboxamide S; saicar synthetase-like fold, ligase, ATP-binding, NOVO purine biosynthesis; 1.90A {Pyrococcus horikoshii} PDB: 3u54_A
Probab=100.00 E-value=3.1e-63 Score=497.87 Aligned_cols=233 Identities=28% Similarity=0.456 Sum_probs=205.9
Q ss_pred cCccccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceee
Q psy246 9 KNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKI 88 (615)
Q Consensus 9 m~~~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkr 88 (615)
|.+.++|||||+|.||++ +++.++++|||++|||||++++.|+|||++||+||+++|++|++
T Consensus 1 m~k~~~iy~GKvk~vy~~--~~~~ll~~~~DriSAfD~~~~~~IpgKG~~l~~iS~~~F~~L~~---------------- 62 (238)
T 3u55_A 1 MVKLMEVYEGKAKKMIPI--DDDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEE---------------- 62 (238)
T ss_dssp -----------CEEEEEC--SSSEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHH----------------
T ss_pred CCccccceeccceeEEEc--CCCEEEEEEeCCccccCcccCCCCCChHHHHHHHHHHHHHHHHh----------------
Confidence 566788999999999998 35789999999999999999999999999999999999998862
Q ss_pred eecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccc
Q psy246 89 HLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKD 168 (615)
Q Consensus 89 y~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lD 168 (615)
+| |+|
T Consensus 63 -------------------------------------------------~g---------------------i~t----- 67 (238)
T 3u55_A 63 -------------------------------------------------HG---------------------IKT----- 67 (238)
T ss_dssp -------------------------------------------------TT---------------------CCB-----
T ss_pred -------------------------------------------------cC---------------------CCC-----
Confidence 45 678
Q ss_pred ccccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccCCCCcccccC
Q psy246 169 KQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRF 248 (615)
Q Consensus 169 Kd~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~~g~~~g~~l 248 (615)
|| + +.+++|+|+||+|+|||||||||||+|||+|+|| |+++|++|
T Consensus 68 --------------------h~---------i-----~~~~~r~~lvkk~~~iPiE~VvR~y~tGS~~k~~-gl~eg~~l 112 (238)
T 3u55_A 68 --------------------HF---------I-----GVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRL-PLPEGYEL 112 (238)
T ss_dssp --------------------SE---------E-----EECSTTEEEEECCEECSEEEEEEEECCGGGGGTS-SCCTTCEE
T ss_pred --------------------cc---------c-----cccccceeeeeeecCCceEEEEecccccchhccc-CCCCCccC
Confidence 88 6 5668999999999999999999999999999997 69999999
Q ss_pred CCCceeeeecCCCCCCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccC
Q psy246 249 CPPCQETFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF 328 (615)
Q Consensus 249 ~~Pi~e~~~K~d~~~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~ 328 (615)
++|++||+||+|++|||+||++++.++| ++.+|++.|+++|++||++++++|+++|++|||+|+|||+
T Consensus 113 ~~Pi~e~~~K~d~~~Dp~I~~~~~~~~g---i~~ee~~~i~~~al~i~~~~~~~~~~~GiiLvDtK~EFG~--------- 180 (238)
T 3u55_A 113 PEPIVELYYKNDELHDPMINYYHAKVLG---ISLDEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGK--------- 180 (238)
T ss_dssp EEEEEEEEECCTTTTSCEECHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECEEE---------
T ss_pred CCCccccccccccCCCCCCCHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHHHCCCEEEeeEEEEEE---------
Confidence 9999999999999999999999999987 5789999999999999999999999999999999999994
Q ss_pred CCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecccCCCcccccCCCcccccccccc
Q psy246 329 PQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVY 408 (615)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~itpDs~Rlw~~~~~~~~~DKq~~ 408 (615)
+.+|+|+|+|||||||||||++++++ ++|||+|
T Consensus 181 ----------------------------------------------d~~g~ivL~DEiTPDssR~W~~~~~~-~lDKq~~ 213 (238)
T 3u55_A 181 ----------------------------------------------DKNGDIVLADEISPDTCRFWDAKTKR-SLDKDVF 213 (238)
T ss_dssp ----------------------------------------------CTTSCEEECSCCSTTTEEEEETTTCC-BCSTHHH
T ss_pred ----------------------------------------------cCCCCEEEEEecCCCccccccCCCcc-ccChHHh
Confidence 56899999999999999999998876 6799999
Q ss_pred cccccccccccchhhhhHHHHHHHhhc
Q psy246 409 RNLSNVTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 409 R~~~~~~~~~l~~VkenY~eVA~~L~~ 435 (615)
|+ +++++.++|.++.++++.
T Consensus 214 R~-------~~~~v~e~Y~e~~~rltG 233 (238)
T 3u55_A 214 RF-------DKGDLIEAYKEIYERITG 233 (238)
T ss_dssp HT-------TCSCHHHHHHHHHHHHHS
T ss_pred hc-------cccchHHHHHHHHHHhhC
Confidence 96 467899999999999975
No 9
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A*
Probab=100.00 E-value=2.3e-59 Score=483.44 Aligned_cols=259 Identities=24% Similarity=0.346 Sum_probs=211.3
Q ss_pred cccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeec
Q psy246 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLL 91 (615)
Q Consensus 12 ~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~l 91 (615)
.++|||||+|.||++ + ++.++++|||++||||+++++.|+|||++||+||+++|++|+ .++ .| +++
T Consensus 12 ~~~ly~GKvkdvY~~-~-d~~ll~v~~DriSAfD~~~~~~IpgKG~vl~~iS~~~F~~L~-~~i--pt---------H~i 77 (306)
T 2cnq_A 12 LPLVARGKVRDIYEV-D-AGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLS-NDV--RN---------HLV 77 (306)
T ss_dssp SCEEEECSSEEEEEE-E-TTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTT-TTS--EE---------SBC
T ss_pred ccccccCCceEEEEc-C-CCEEEEEEeCCCCCcccccCCCCCcHhHHHHHHHHHHHHHHh-ccC--Cc---------cee
Confidence 368999999999999 3 389999999999999999999999999999999999999998 443 22 222
Q ss_pred CCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCcccccccccc
Q psy246 92 KSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQV 171 (615)
Q Consensus 92 KdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~ 171 (615)
..+..... +.. +|...
T Consensus 78 ~~~~~~~~-------------------------------------~~~---------------------~P~~~------ 93 (306)
T 2cnq_A 78 DIAPGKTI-------------------------------------FDY---------------------LPAKL------ 93 (306)
T ss_dssp CCCTTCCG-------------------------------------GGG---------------------SCGGG------
T ss_pred eccccccc-------------------------------------ccc---------------------ccccc------
Confidence 11111100 110 11100
Q ss_pred cccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccC------------
Q psy246 172 YRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRH------------ 239 (615)
Q Consensus 172 fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~------------ 239 (615)
..| .| .+.+++|+|+||+|+|||||||||||+|||+|+||
T Consensus 94 --------~~y------~y--------------~~~l~~r~~lvkk~~~iPlE~VvR~y~tGS~~k~y~~~~~v~Gi~lp 145 (306)
T 2cnq_A 94 --------SEP------KY--------------KTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQP 145 (306)
T ss_dssp --------GSH------HH--------------HHHHTTSEEEEECCEECSSBEEEEEECCHHHHHHHHHHSEETTEECC
T ss_pred --------ccc------cc--------------hhhcCCceEEEEecceeeEEEEEeeeeccchHHHHhccCccccccCC
Confidence 000 11 02357999999999999999999999999999999
Q ss_pred CCCcccccCCCCceeeeecCCCC-CCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeee
Q psy246 240 PGTQECYRFCPPCQETFFKDDAN-HDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFG 318 (615)
Q Consensus 240 ~g~~~g~~l~~Pi~e~~~K~d~~-~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg 318 (615)
+|+++|++|++|++||+||+|.+ |||+||++++.+ ++++++++.|+++|++||++++++|+++||+|||||||||
T Consensus 146 ~Gl~eg~~Lp~Pi~tp~tK~d~~~hD~~Is~~~~~~----~~~~e~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG 221 (306)
T 2cnq_A 146 QGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAE----LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFG 221 (306)
T ss_dssp TTCCTTCEEEEEEECCBCCCC---CCCBCCHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCcccCCCCCCEEEeeecccccCCCCCCCHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeE
Confidence 58999999999999999999998 999999999998 4899999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCC-CCEEEEecc-cCCCcccccC
Q psy246 319 IDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNE-GNILVSDVI-DSDSWRLWPE 396 (615)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~-g~ivLaD~i-tpDs~Rlw~~ 396 (615)
+ +.+ |+|+|+||| ||||||||++
T Consensus 222 ~-------------------------------------------------------d~~~G~ivL~DEI~TPDSsR~W~~ 246 (306)
T 2cnq_A 222 I-------------------------------------------------------DEKTNEIILVDEVLTPDSSRFWNG 246 (306)
T ss_dssp E-------------------------------------------------------ETTTTEEEEESCCSCTTTEEEEET
T ss_pred E-------------------------------------------------------eCCCCcEEEEEeecCCCccceecc
Confidence 4 445 999999999 9999999999
Q ss_pred CCc-----cccccccccccccc-----------ccccccchhhhhHHHHHHHhhc
Q psy246 397 GKK-----ELMKDKQVYRNLSN-----------VTAEGLNQVKLNFTWIADTLAS 435 (615)
Q Consensus 397 ~~~-----~~~~DKq~~R~~~~-----------~~~~~l~~VkenY~eVA~~L~~ 435 (615)
+++ +.++|||+||+|.. ++++=...+.+.|.++.++++.
T Consensus 247 ~~y~~G~~~~s~DKq~~R~~l~~~g~~~~~~p~lp~~vv~~~~~~Y~e~~erltg 301 (306)
T 2cnq_A 247 ASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLTG 301 (306)
T ss_dssp TTCCTTSCCCCSSTHHHHHHHHHTTCTTCTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCcccCHHHHHhHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 876 35799999999853 1123344589999999999964
No 10
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus}
Probab=100.00 E-value=1.2e-57 Score=469.51 Aligned_cols=243 Identities=24% Similarity=0.328 Sum_probs=205.1
Q ss_pred cccccccccceeeeccCCCCeEEEEEccCccccCCcccccccchHHHhHHHHHHHHHHHhccccccceeccCcceeeeec
Q psy246 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLL 91 (615)
Q Consensus 12 ~~llyEGKaK~Vy~~~~dp~~vll~fKDdiTA~ng~kk~~i~GKG~lnn~iSs~iF~~L~~~evv~RniaaGs~kkry~l 91 (615)
-++|||||+|+||++ ++ +.++++|||++||||++++++|+|||++||+||+++|++|+ +. -+++
T Consensus 12 ~~~ly~GKvk~vY~~-~d-~~ll~v~~DriSAfD~~~~~~IpgKG~vl~~iS~~~F~~L~-----Ip---------tH~i 75 (301)
T 3r9r_A 12 YQHVASGKVRELYRV-DD-EHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFFFGLLT-----VP---------NHLA 75 (301)
T ss_dssp SEEEEECSSEEEEEC-SS-SEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHSC-----SC---------BCBC
T ss_pred CceeecccceEEEEc-CC-CcEEEEEeCCCcCccccCCCCCCcHHHHHHHHHHHHHHhhC-----CC---------eeEe
Confidence 578999999999999 45 45777799999999999999999999999999999999996 11 1222
Q ss_pred CC-CCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhccccceeccCCCccccCCCCCCCCccccccccc
Q psy246 92 KS-DPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQ 170 (615)
Q Consensus 92 Kd-D~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~gi~LaDeIspDt~RlWd~~~~~i~T~~~lDKd 170 (615)
+. ++. . ++.
T Consensus 76 ~~~~~~------------------------------------------~---------------------~p~------- 85 (301)
T 3r9r_A 76 GPPDDP------------------------------------------R---------------------IPE------- 85 (301)
T ss_dssp SCTTCT------------------------------------------T---------------------SCG-------
T ss_pred eccCcc------------------------------------------c---------------------ccc-------
Confidence 11 111 0 111
Q ss_pred ccccCcccchhhhhhhhhhhhhhhhcccccCCCCCCccCCCeEEEeeeeeeeeEEEeeceeeccccccC-----------
Q psy246 171 VYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRH----------- 239 (615)
Q Consensus 171 ~fRdLg~v~~~y~e~vk~hf~wva~~~~~v~~~~~~~~~~~~~l~~~~~~iPlE~v~R~~a~GS~~~r~----------- 239 (615)
.+++|+|+||+|+|||||||||||+|||+|+||
T Consensus 86 ------------------------------------~~~~r~~lvkk~~~iPlEvVvR~y~tGS~~kry~~~g~vcGi~l 129 (301)
T 3r9r_A 86 ------------------------------------EVLGRALLVRRLDMLPVECVARGYLTGSGLLDYQRTGAVCGHVL 129 (301)
T ss_dssp ------------------------------------GGTTSEEEEECCEECSCBEEEEEEECHHHHHHHHHHSEETTEEC
T ss_pred ------------------------------------cccCceEEEEEccccceEEEEEeeecchhHHHhhccCccccccC
Confidence 135799999999999999999999999999999
Q ss_pred -CCCcccccCCCCceeeeecCCCC-CCCCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEee
Q psy246 240 -PGTQECYRFCPPCQETFFKDDAN-HDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEF 317 (615)
Q Consensus 240 -~g~~~g~~l~~Pi~e~~~K~d~~-~D~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Ef 317 (615)
+|+++|++|++|++||+||+|.+ |||+||+++++++ ++++++++|+++|++||++++++|+++||+||||||||
T Consensus 130 p~Gl~eg~~L~~Pi~e~~tK~d~~~hD~~Is~~~~~~~----~g~~~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EF 205 (301)
T 3r9r_A 130 PQGLGEASRLDPPLFTPATKADIGEHDMNVDFAAVVGL----VGAVRANQLRDETIKIYTRAAAHALHKGIILADTKFEF 205 (301)
T ss_dssp CTTCCTTEEEEEEEECCEECCCSSSCCEECCHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECE
T ss_pred CccccccccCCCCEEEeeeccccCCCCCCcCHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEe
Confidence 58999999999999999999988 9999999999873 78999999999999999999999999999999999999
Q ss_pred ecCCCCCcccCCCCccchhhhhhccccchhhHHHHHHHHHHhhhhhhhhcceeeeeecCCCCEEEEecc-cCCCcccccC
Q psy246 318 GIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI-DSDSWRLWPE 396 (615)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvd~~~~~g~~~~g~ivLaD~i-tpDs~Rlw~~ 396 (615)
|+ +.+|+|+|+||| ||||||||++
T Consensus 206 G~-------------------------------------------------------d~~G~ivL~DEI~TPDSsR~W~~ 230 (301)
T 3r9r_A 206 GV-------------------------------------------------------DIEGNLVLADEVFTPDSSRYWDA 230 (301)
T ss_dssp EE-------------------------------------------------------CTTSCEEECSCCSCTTTEEEEEG
T ss_pred eE-------------------------------------------------------cCCCcEEEEeecCCCcccccccc
Confidence 94 457999999987 9999999998
Q ss_pred CCcc-----cccccccccccccccccc----------------cchhhhhHHHHHHHhhc
Q psy246 397 GKKE-----LMKDKQVYRNLSNVTAEG----------------LNQVKLNFTWIADTLAS 435 (615)
Q Consensus 397 ~~~~-----~~~DKq~~R~~~~~~~~~----------------l~~VkenY~eVA~~L~~ 435 (615)
++++ .++|||+||+|..-...| .....+.|.++.++++.
T Consensus 231 ~~y~~g~~~~s~DKq~~R~~l~~~~~~~~~~~~~~~p~lP~evv~~t~~~Y~e~~e~lTg 290 (301)
T 3r9r_A 231 AHYQPGVVQDSFDKQFVRNWLTGPESGWDRASDTPPPPLPDEVAVATRERYIEAYERISG 290 (301)
T ss_dssp GGCCTTSCCCCTTTHHHHHHHTSSSSCCCTTC--CCCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCcccchHHHHhhccccccCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 7753 579999999885421122 34567778888887754
No 11
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=100.00 E-value=2.7e-49 Score=374.23 Aligned_cols=151 Identities=30% Similarity=0.396 Sum_probs=144.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcC-CCCEEEEEecC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSS-GKNVVFIAVAG 519 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~-~~~~V~Ia~AG 519 (615)
++|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+ |.+ ||||+||
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR---~p~~~~~~~-----------~~a~~~~~~~-ViIa~AG 67 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHK---TAEHVVSML-----------KEYEALDRPK-LYITIAG 67 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTT---CHHHHHHHH-----------HHHHTSCSCE-EEEEECC
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccC---CHHHHHHHH-----------HHhhhcCCCc-EEEEECC
Confidence 5899999999999999999999999999999 9999999 999999999 888875 686 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCCHHHHHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~ 596 (615)
|+|||||||||+|++||||||++++ |+| ||||||||+||||+||+|++|||++|+|||++.|+.||+||+.||+++
T Consensus 68 ~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~ 146 (159)
T 3rg8_A 68 RSNALSGFVDGFVKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVLEPKNAALLAARIFSLYDKEIADSVKSYMESN 146 (159)
T ss_dssp SSCCHHHHHHHHSSSCEEECCCCCCGGGGTH-HHHHHCCCTTCCCEECCSHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHhccCCCEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEecCchHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 899 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHH
Q psy246 597 YIALNKEDKKSR 608 (615)
Q Consensus 597 ~~~~~~~d~~l~ 608 (615)
++++.++|++|+
T Consensus 147 ~~~v~~~~~~l~ 158 (159)
T 3rg8_A 147 AQKIIEDDSKLK 158 (159)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 12
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=100.00 E-value=6.4e-49 Score=375.60 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=150.4
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 440 TDNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
..++|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+|
T Consensus 6 ~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR---~p~~~~~~~-----------~~a~~~g~~-ViIa~A 70 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHR---TPEAMFSYA-----------RGAAARGLE-VIIAGA 70 (174)
T ss_dssp CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---CHHHHHHHH-----------HHHHHHTCC-EEEEEE
T ss_pred CCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCCC---CHHHHHHHH-----------HHHHhCCCC-EEEEec
Confidence 356899999999999999999999999999999 9999999 999999999 999999998 999999
Q ss_pred CCCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHH
Q psy246 519 GKSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQ 593 (615)
Q Consensus 519 G~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~ 593 (615)
||+|||||||||+|++||||||++++ |+|+||||+|||+||||+|| +|++|||++|+|||++.|+.||+||+.||
T Consensus 71 G~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~~~~nAa~lAa~Il~~~d~~l~~kl~~~r 150 (174)
T 3lp6_A 71 GGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAANPQLRARIVAFQ 150 (174)
T ss_dssp ESSCCHHHHHHHHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcCcchHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999976 99999999999999999998 59999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHh
Q psy246 594 TKLYIALNKEDKKSRQE 610 (615)
Q Consensus 594 ~~~~~~~~~~d~~l~~~ 610 (615)
+++.+++.+++++|++.
T Consensus 151 ~~~~~~v~~~~~~l~~~ 167 (174)
T 3lp6_A 151 DRLADVVAAKDAELQRL 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 13
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=100.00 E-value=7.6e-49 Score=373.58 Aligned_cols=155 Identities=29% Similarity=0.302 Sum_probs=148.6
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 440 TDNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
..++|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+|
T Consensus 5 ~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR---~p~~~~~~~-----------~~a~~~g~~-ViIa~A 69 (169)
T 3trh_A 5 NKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHR---TPKETVEFV-----------ENADNRGCA-VFIAAA 69 (169)
T ss_dssp -CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHH-----------HHHHHTTEE-EEEEEE
T ss_pred CCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcccC---CHHHHHHHH-----------HHHHhCCCc-EEEEEC
Confidence 356899999999999999999999999999999 9999999 999999999 999999998 999999
Q ss_pred CCCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHH
Q psy246 519 GKSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRM 591 (615)
Q Consensus 519 G~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~ 591 (615)
||+|||||||||+|++||||||++++ |+|+||||+|||+||||+|| + |++|||++|+|||++.|+.||+||+.
T Consensus 70 G~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~ 149 (169)
T 3trh_A 70 GLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIALQDKSIAQKLVQ 149 (169)
T ss_dssp CSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999875 99999999999999999997 5 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHH
Q psy246 592 YQTKLYIALNKEDKKSRQ 609 (615)
Q Consensus 592 ~~~~~~~~~~~~d~~l~~ 609 (615)
||+++.+++.+++.++++
T Consensus 150 ~r~~~~~~v~~~~~~l~~ 167 (169)
T 3trh_A 150 QRTAKRETLKKADENLQT 167 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhHhh
Confidence 999999999999999865
No 14
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.5e-49 Score=374.29 Aligned_cols=152 Identities=24% Similarity=0.280 Sum_probs=146.8
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.++|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+||
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR---~p~~~~~~~-----------~~a~~~g~~-ViIa~AG 67 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHR---TPKMMVQFA-----------SEARERGIN-IIIAGAG 67 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHH-----------HHTTTTTCC-EEEEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcC---CHHHHHHHH-----------HHHHhCCCc-EEEEECC
Confidence 46899999999999999999999999999999 9999999 999999999 999999998 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRMY 592 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~~ 592 (615)
|+|||||||||+|++||||||++++ |+|+||||+|||+||||+|| | |++|||++|+|||++.|+.||+||+.|
T Consensus 68 ~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~ 147 (163)
T 3ors_A 68 GAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQY 147 (163)
T ss_dssp SSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred chhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999886 99999999999999999997 6 899999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHH
Q psy246 593 QTKLYIALNKEDKKS 607 (615)
Q Consensus 593 ~~~~~~~~~~~d~~l 607 (615)
|+++.+++.+++++|
T Consensus 148 r~~~~~~v~~~~~~l 162 (163)
T 3ors_A 148 ESSLIQKVEDMQNEL 162 (163)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhHhhc
Confidence 999999999988765
No 15
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=100.00 E-value=1.5e-48 Score=375.35 Aligned_cols=154 Identities=26% Similarity=0.311 Sum_probs=148.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
-++|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+||
T Consensus 13 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR---~p~~l~~~~-----------~~a~~~g~~-ViIa~AG 77 (183)
T 1o4v_A 13 VPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHR---TPDRMFEYA-----------KNAEERGIE-VIIAGAG 77 (183)
T ss_dssp -CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECCTTT---CHHHHHHHH-----------HHTTTTTCC-EEEEEEE
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEEEEcccC---CHHHHHHHH-----------HHHHhCCCc-EEEEecC
Confidence 46899999999999999999999999999999 9999999 999999999 999999998 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQT 594 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~ 594 (615)
|+|||||||||+|++||||||++++ |+|+||||||||+|+||+|| +|++|||++|+|||++.|+.||+||+.||.
T Consensus 78 ~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~Id~~~nAa~lAaqIla~~d~~l~~kL~~~r~ 157 (183)
T 1o4v_A 78 GAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGIKYPEIARKVKEYKE 157 (183)
T ss_dssp SSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCchHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999885 99999999999999999998 899999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHH
Q psy246 595 KLYIALNKEDKKSRQ 609 (615)
Q Consensus 595 ~~~~~~~~~d~~l~~ 609 (615)
++++++.++++++++
T Consensus 158 ~~~~~v~~~~~~l~~ 172 (183)
T 1o4v_A 158 RMKREVLEKAQRLEQ 172 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998975
No 16
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=100.00 E-value=2e-48 Score=370.75 Aligned_cols=152 Identities=25% Similarity=0.272 Sum_probs=142.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.|+|+|||||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+||
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR---~p~~l~~~~-----------~~a~~~g~~-ViIa~AG 75 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHR---TPDYMFEYA-----------ETARERGLK-VIIAGAG 75 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHH-----------HHTTTTTCC-EEEEEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccC---CHHHHHHHH-----------HHHHhCCCc-EEEEECC
Confidence 46899999999999999999999999999999 9999999 999999999 999999998 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRMY 592 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~~ 592 (615)
|+|||||||||+|++||||||++++ |+|+||||||||+|+||+|| + |++|||++|+|||++.|+.||+||+.|
T Consensus 76 ~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~ 155 (170)
T 1xmp_A 76 GAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELR 155 (170)
T ss_dssp SSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999999999999885 99999999999999999997 5 999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHH
Q psy246 593 QTKLYIALNKEDKKS 607 (615)
Q Consensus 593 ~~~~~~~~~~~d~~l 607 (615)
|+++.+++.++++++
T Consensus 156 r~~~~~~v~~~~~~~ 170 (170)
T 1xmp_A 156 REAIEKDVREGSELV 170 (170)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHhcccCC
Confidence 999999999887653
No 17
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=100.00 E-value=9.8e-48 Score=368.44 Aligned_cols=151 Identities=25% Similarity=0.279 Sum_probs=142.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.++|+|||||+||+|+|++|.++|++|||+|| +|+|||| +|+++.+|+ ++++.+|++ ||||+||
T Consensus 22 kp~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHR---tp~~l~~~~-----------~~a~~~g~~-ViIa~AG 86 (181)
T 4b4k_A 22 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHR---TPDYMFEYA-----------ETARERGLK-VIIAGAG 86 (181)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHH-----------HHTTTTTCC-EEEEEEC
T ss_pred CccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEcccc---ChHHHHHHH-----------HHHHhcCce-EEEEecc
Confidence 46899999999999999999999999999999 9999999 999999999 999999998 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeeec----ChhhHHHHHHHHHccCCHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTVT----APSNAALAAAQILAQRDFFIWSKLRMY 592 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv~----~~~nAa~~A~~Il~~~d~~l~~kl~~~ 592 (615)
++|||||||||+|++||||||+.++ |+|+||||+|||+||||+||+ ++.|||++|+|||++.|+.||+||+.|
T Consensus 87 ~aahLpGvvAa~T~~PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvaig~~ga~NAallA~qILa~~d~~l~~kl~~~ 166 (181)
T 4b4k_A 87 GAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELR 166 (181)
T ss_dssp SSCCHHHHHHTTCCSCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCSSHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccccchhhHHhcCCCCEEEEecCCCCccchhhHHHHHhCCCCCceEEEecCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999999999999875 999999999999999999984 569999999999999999999999999
Q ss_pred HHHHHHHHHHhhHH
Q psy246 593 QTKLYIALNKEDKK 606 (615)
Q Consensus 593 ~~~~~~~~~~~d~~ 606 (615)
|+++.+++.++++.
T Consensus 167 r~~~~~~v~~~~e~ 180 (181)
T 4b4k_A 167 REAIEKDVREGSEL 180 (181)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887754
No 18
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=100.00 E-value=3.9e-48 Score=372.15 Aligned_cols=153 Identities=24% Similarity=0.261 Sum_probs=145.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.++|+|||||+||+|+|++|..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+||
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR---~p~~l~~~~-----------~~a~~~g~~-ViIa~AG 85 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHR---TPDRLADYA-----------RTAAERGLN-VIIAGAG 85 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---CHHHHHHHH-----------HHTTTTTCC-EEEEEEE
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcccC---CHHHHHHHH-----------HHHHhCCCc-EEEEecC
Confidence 57899999999999999999999999999999 9999999 999999999 999999998 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRMY 592 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~~ 592 (615)
|+|||||||||+|++||||||++++ |+|+||||||||+|+||+|| + |++|||++|+|||++.|+.||+||+.|
T Consensus 86 ~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~ 165 (182)
T 1u11_A 86 GAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETW 165 (182)
T ss_dssp SSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred chhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999999999999885 99999999999999999887 5 999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHH
Q psy246 593 QTKLYIALNKEDKKSR 608 (615)
Q Consensus 593 ~~~~~~~~~~~d~~l~ 608 (615)
|+++++++.+++++++
T Consensus 166 r~~~~~~v~~~~~~l~ 181 (182)
T 1u11_A 166 RALQTASVPNSPITED 181 (182)
T ss_dssp HHHHHHHSCSSCC---
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999999999888775
No 19
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=100.00 E-value=1.2e-47 Score=366.42 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=144.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
.++|+|||||+||+|+|+||..+|++||++|| +|+|||| +|+++.+|+ ++++.+|++ ||||+||
T Consensus 12 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR---~p~~~~~~~-----------~~a~~~g~~-ViIa~AG 76 (174)
T 3kuu_A 12 GVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHR---TPDRLFSFA-----------EQAEANGLH-VIIAGNG 76 (174)
T ss_dssp CCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---CHHHHHHHH-----------HHTTTTTCS-EEEEEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccC---CHHHHHHHH-----------HHHHhCCCc-EEEEECC
Confidence 45899999999999999999999999999999 9999999 999999999 999999999 9999999
Q ss_pred CCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q psy246 520 KSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRMY 592 (615)
Q Consensus 520 ~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~~ 592 (615)
++|||||||||+|++||||||++++ |+|+||||+|||+||||+|| + |++|||++|+|||++.|+.||+||+.|
T Consensus 77 ~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~ 156 (174)
T 3kuu_A 77 GAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHW 156 (174)
T ss_dssp SSCCHHHHHHHTCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999875 99999999999999999997 6 899999999999999999999999999
Q ss_pred HHHHHHHHHHhhHH
Q psy246 593 QTKLYIALNKEDKK 606 (615)
Q Consensus 593 ~~~~~~~~~~~d~~ 606 (615)
|+++.+++.+++..
T Consensus 157 r~~~~~~v~~~~~~ 170 (174)
T 3kuu_A 157 RQSQTDDVLDNPDP 170 (174)
T ss_dssp HHHHHHHHHTCCCT
T ss_pred HHHHHHHHHhCcCC
Confidence 99999999876543
No 20
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=100.00 E-value=1.2e-47 Score=364.42 Aligned_cols=150 Identities=26% Similarity=0.278 Sum_probs=143.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
++|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+|||
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR---tp~~l~~~~-----------~~~~~~g~~-ViIa~AG~ 70 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHR---TPDKMFDYA-----------ETAKERGLK-VIIAGAGG 70 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTT---CHHHHHHHH-----------HHTTTTTCC-EEEEEECS
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcC---CHHHHHHHH-----------HHHHhCCCc-EEEEECCc
Confidence 5899999999999999999999999999999 9999999 999999999 999999998 99999999
Q ss_pred CCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHHHH
Q psy246 521 SNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRMYQ 593 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~~~ 593 (615)
+|||||||||+|++||||||++++ |+|+||||+|||+||||+|| + |++|||++|+|||++.|+.||+||+.||
T Consensus 71 aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~I~~ag~~nAa~lAa~Il~~~d~~l~~kl~~~r 150 (166)
T 3oow_A 71 AAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFR 150 (166)
T ss_dssp SCCHHHHHHHTCSSCEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGGCHHHHHHHHHHH
T ss_pred chhhHHHHHhccCCCEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999876 99999999999999999998 4 5999999999999999999999999999
Q ss_pred HHHHHHHHHhhHH
Q psy246 594 TKLYIALNKEDKK 606 (615)
Q Consensus 594 ~~~~~~~~~~d~~ 606 (615)
+++.+++.+++.+
T Consensus 151 ~~~~~~v~~~~~~ 163 (166)
T 3oow_A 151 AEQTRFVLENPDP 163 (166)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHHhcccc
Confidence 9999999887654
No 21
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.6e-47 Score=358.63 Aligned_cols=150 Identities=31% Similarity=0.362 Sum_probs=141.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
+|+|+|||+||+|+|+||..+|++||++|+ +|+|||| +|+++.+|+ ++++. + ||||+|||+
T Consensus 1 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR---~p~~~~~~~-----------~~a~~---~-ViIa~AG~a 62 (157)
T 2ywx_A 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHR---TPELVEEIV-----------KNSKA---D-VFIAIAGLA 62 (157)
T ss_dssp CEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---CHHHHHHHH-----------HHCCC---S-EEEEEEESS
T ss_pred CEEEEEccHHHHHHHHHHHHHHHHcCCCeEEEEEcccC---CHHHHHHHH-----------HhcCC---C-EEEEEcCch
Confidence 489999999999999999999999999999 9999999 999999998 76654 5 999999999
Q ss_pred CCchhhhcccCCCCeeccCCCCC--chhhhhhhhcCCCCceeeee--cChhhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q psy246 522 NGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNLPAGIACSTV--TAPSNAALAAAQILAQRDFFIWSKLRMYQTKLY 597 (615)
Q Consensus 522 ~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqmp~Gv~v~tv--~~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~~ 597 (615)
||||||+||+|++||||||++.+ |+|+||||+|||+|+||+|| ||++|||++|+|||++.|+.||+||+.||.+++
T Consensus 63 a~Lpgvva~~t~~PVIgVP~~~~l~G~daLlS~vqmP~gvpVatV~I~~~~nAa~lA~~Il~~~d~~l~~kl~~~r~~~~ 142 (157)
T 2ywx_A 63 AHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREKMK 142 (157)
T ss_dssp CCHHHHHHTTCSSCEEEEEECSSGGGHHHHHHHHSCCTTSCCEECCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhccCCCEEEecCCCccCcHHHHHHHhcCCCCCeeEEEecCCcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999444 99999999999999999997 599999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHh
Q psy246 598 IALNKEDKKSRQE 610 (615)
Q Consensus 598 ~~~~~~d~~l~~~ 610 (615)
+++.++++++++.
T Consensus 143 ~~v~~~~~~l~~~ 155 (157)
T 2ywx_A 143 KKVYASDEKVKEM 155 (157)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHh
Confidence 9999999888754
No 22
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=100.00 E-value=4.5e-47 Score=361.95 Aligned_cols=149 Identities=24% Similarity=0.267 Sum_probs=143.1
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 440 TDNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
..|+|+|||||+||+|+|++|..+|++|||+|+ +|+|||| +|+++.+|+ ++++.+|++ ||||+|
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR---~p~~l~~~~-----------~~a~~~g~~-ViIa~A 75 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHR---MPDEMFDYA-----------EKARERGLR-AIIAGA 75 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT---SHHHHHHHH-----------HHHTTTTCS-EEEEEE
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEcccc---CHHHHHHHH-----------HHHHhcCCe-EEEEec
Confidence 467999999999999999999999999999999 9999999 999999999 999999999 999999
Q ss_pred CCCCCchhhhcccCCCCeeccCCCCC---chhhhhhhhcCCCCceeeee--c--ChhhHHHHHHHHHccCCHHHHHHHHH
Q psy246 519 GKSNGLGPVISGNTCYPVINCPPLDS---TGRDVWSSLNLPAGIACSTV--T--APSNAALAAAQILAQRDFFIWSKLRM 591 (615)
Q Consensus 519 G~~~~L~gvva~~t~~PVI~vP~~~~---g~~~l~S~lqmp~Gv~v~tv--~--~~~nAa~~A~~Il~~~d~~l~~kl~~ 591 (615)
||+||||||+||+|++||||||++++ |+|+|||++|||+|+||+|+ + |++|||++|+|||++.|++||+||+.
T Consensus 76 G~aahLpgvvA~~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~ 155 (173)
T 4grd_A 76 GGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAA 155 (173)
T ss_dssp ESSCCHHHHHHHHCCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccchhhheecCCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999886 99999999999999999997 3 89999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy246 592 YQTKLYIALNKE 603 (615)
Q Consensus 592 ~~~~~~~~~~~~ 603 (615)
||.++.+++...
T Consensus 156 ~r~~~~~~v~~~ 167 (173)
T 4grd_A 156 FRVRQNEAAHAM 167 (173)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcc
Confidence 999999988753
No 23
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} SCOP: d.143.1.0
Probab=99.85 E-value=7.5e-23 Score=205.24 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=102.6
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.++| ++|+|++|||+++.+++.++++++++++..+.+++.++|.++.+++.+.
T Consensus 94 EvVvR~~a~GS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~i~~~~~~~~g~~~~ee~~~i~~~al~i~~~l~~~~~~~ 173 (238)
T 3nua_A 94 EVIVRNVAAGSMAKRLGLEEGYELKTTVFELSYKDDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEILKEAFKKQ 173 (238)
T ss_dssp EEEEEEEECHHHHHHHTCCTTEEEEEEEEEEEECCGGGTCCEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeeeecccchhhcCCcccccCCCCeEEEeecCCCCCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999986 4699999999999999999999999999999999999999999999999
Q ss_pred c----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhhh
Q psy246 139 E----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVKL 188 (615)
Q Consensus 139 g----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk~ 188 (615)
| |+|+||||||||||||.+ |++++|||+|| |||+|+++|.|-.++
T Consensus 174 GiiLvD~K~EFG~~~g~ivL~DEitPDs~R~W~~~-----~~~~~DKd~~R~~lg~v~~~Y~ev~~r 235 (238)
T 3nua_A 174 NINLIDFKLEFGRYNGEILLADEISPDTCRFWDAT-----TGEKMDKDRFRRDMGNVINGYREVLNR 235 (238)
T ss_dssp TEEEEEEEEEEEEETTEEEEESCCSTTTEEEEETT-----TCCBCSTHHHHTTCSCHHHHHHHHHHH
T ss_pred CCEEEEEEEEeEEECCEEEEEEeeCCCcccccCCC-----CCcccChHHHhhccchHHHHHHHHHHH
Confidence 7 777899999999999986 57899999999 999999999886653
No 24
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Probab=99.85 E-value=1.6e-22 Score=205.16 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=101.1
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.+|| ++|+|++|||+|+.+++.++++++++++..+.+++.++|.++.+++.+.
T Consensus 111 EvVvR~~aaGS~~kr~Gl~eg~~L~~Pive~~~K~d~~hDp~Is~~~~~~lg~~~~ee~~~i~~~al~i~~~l~~~~~~~ 190 (263)
T 3kre_A 111 EVVIRNLAAGNFSKRFQIADGTPFKSPIIEFYYKNDELSDPMVSEGHILSFQWLTNQELEKIKILSLKINNILSELFFNV 190 (263)
T ss_dssp EEEEEEECCHHHHHHHTCCTTCEEEEEEEEEEECCTTTTCCEECHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeeecchhhhhcCCcccccCCCCeEEEEecCcccCCCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999886 4699999999999999999999999999999999999999999999998
Q ss_pred c--------------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhh
Q psy246 139 E--------------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 139 g--------------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
| |+|+||||||||||||.+ |.++||||+|| +|++|.++|.|-.+
T Consensus 191 GiiLvD~K~EFG~d~~G~~~~ivL~DEItPDs~R~Wd~~-----~~~~lDKd~fR~~lg~v~~~Y~ev~~ 255 (263)
T 3kre_A 191 GIKLVDFKLEFGKLHNDEQSDLFLADEISPDTCRLWDIS-----TNKRLDKDRYRLNLGNVIEGYREVAH 255 (263)
T ss_dssp TEEEEEEEECEEEETTCTTCCCEECSCCSTTTEEEEETT-----TCCBCSTHHHHTTCSCHHHHHHHHHH
T ss_pred CCEEEEEEEEeeEeCCCCcceEEEEEeeCCCcccceECC-----CCCccCHHHHHhcchhHHHHHHHHHH
Confidence 5 788999999999999986 57899999999 99999999966554
No 25
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A*
Probab=99.84 E-value=1.8e-22 Score=203.02 Aligned_cols=109 Identities=19% Similarity=0.146 Sum_probs=100.7
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.++| ++|+|++|||+|+.+|+.+++++++++++.+.+++.++|.++.+++.++
T Consensus 96 EvVvR~~aaGS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~Is~~~~~~~~~~~~ee~~~i~~~al~i~~~l~~~~~~~ 175 (242)
T 2z02_A 96 EVIVRNIAAGSLCRRYPFEEGKELPFPIVQFDYKNDEYGDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEK 175 (242)
T ss_dssp EEEEEEECCTHHHHHSSCCTTCEEEEEEEEEEECCGGGTCCBCCHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeeeccccHHhcCCccCcCCCCCEEEEEecCCcCCCCccCHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999997 4688999999999999999999999999999999999999999999998
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
| |+|+||||||||||||.+ |++++|||+|| +||+++++|.|-.+
T Consensus 176 Gi~LvD~K~EFG~~~~G~ivL~DEItPDs~R~W~~~-----~~~~~DK~~~R~~lg~v~~~Y~ev~~ 237 (242)
T 2z02_A 176 GIILVDFKIEIGKDREGNLLVADEISPDTMRLWDKE-----TRDVLDKDVFRKDLGDVIAKYRIVAE 237 (242)
T ss_dssp TEEEEEEEECEEEETTCCEEECSCCSTTTEEEEETT-----TCCBCSTHHHHTTCSCHHHHHHHHHH
T ss_pred CCEEEEEEEEEEEcCCCCEEEEEeecCCccccccCC-----CCCccCHHHHHhhchhHHHHHHHHHH
Confidence 7 777899999999999986 57889999999 99999998866544
No 26
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A*
Probab=99.83 E-value=5.5e-22 Score=198.89 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=100.6
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.++| ++|+|++|||+|+.+++.++++++++++..+.+++.++|.++.+++.++
T Consensus 90 EvVvR~~a~GS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~I~~~~~~~~~~~~~ee~~~i~~~al~i~~~l~~~~~~~ 169 (237)
T 2gqr_A 90 ECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDA 169 (237)
T ss_dssp EEEEEEECCHHHHHHHCCCTTCEEEEEEEEEEECCGGGTCCEECHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeeeccchHHhcCCccccCCCCCEEEeeecCCcCCCCCCCHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999987 4688999999999999999999999999999999999999999999998
Q ss_pred c----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhh
Q psy246 139 E----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 139 g----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
| |+|+||||||||||||.+ |.+++|||+|| +|+++.++|.|-.+
T Consensus 170 Gi~LvD~K~EFG~~~G~ivL~DEItPDs~R~W~~~-----~~~~~DK~~~R~~l~~~~~~Y~ev~~ 230 (237)
T 2gqr_A 170 GLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKE-----TLEKMDKDRFRQSLGGLIEAYEAVAR 230 (237)
T ss_dssp TEEEEEEEEEEEEETTEEEEESCCSTTSEEEEETT-----TCCBCSTHHHHTTCCCHHHHHHHHHH
T ss_pred CCEEEEEEEEEEeECCEEEEEEEecCCccccccCC-----CCcccCHHHHHHhHHHHHHHHHHHHH
Confidence 7 777899999999999986 57899999999 99999998866443
No 27
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus}
Probab=99.83 E-value=5.5e-22 Score=199.62 Aligned_cols=108 Identities=16% Similarity=0.081 Sum_probs=99.5
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.++| ++|+|++|||+|+.+|+.+++++++++++.+.+++.++|.++.++|.++
T Consensus 93 EvVvR~~aaGS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~I~~~~~~~~~~~~~ee~~~i~~~al~i~~~l~~~~~~~ 172 (244)
T 2ywv_A 93 EVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAER 172 (244)
T ss_dssp EEEEEEEECHHHHHHHTCCTTEEEEEEEEEEEECCGGGTCCEECHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeeeccccHHhcCCccCcCCCCCEEEEEecCCcCCCCCCCHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999987 4688999999999999999999999999999999999999999999998
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQV 186 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~v 186 (615)
| |+|+||||||||||||.+ |.+++|||+|| +|++|+++|.|-.
T Consensus 173 Gi~LvD~K~EFG~~~~G~ivL~DEItPDs~R~W~~~-----~~~~~DK~~~R~~l~~v~~~Y~ev~ 233 (244)
T 2ywv_A 173 NVRLIDFKLEFGRTADGAILLADEISPDTCRLWDAK-----TNEKLDKDVFRRDLGSLTDAYEVIL 233 (244)
T ss_dssp TEEEEEEEECEEECTTSCEEECSCCSTTTEEEEETT-----TCCBCSTHHHHTTCSCHHHHHHHHH
T ss_pred CCEEEEEEEEEEEcCCCCEEEEeeecCCcceeeeCC-----CCcccCHHHHHhhHHHHHHHHHHHH
Confidence 7 777899999999999986 57889999999 9999998875544
No 28
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=99.82 E-value=1.2e-21 Score=195.76 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=98.2
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+||+++||+.++| ++|+|++|||+|+.+|+.+++++++++++.+.+++.++|.++.+++.++
T Consensus 83 EvVvR~~a~GS~~kryGl~eg~~L~~Pi~e~~~K~d~~~Dp~Is~~~~~~~~~~~~ee~~~i~~~al~i~~~l~~~~~~~ 162 (230)
T 1kut_A 83 EVVVRLKKAGSFVRRYGGAEGEDLPVPLVEFFIKDDERHDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERA 162 (230)
T ss_dssp EEEEEEECCHHHHHHHCCCTTCEEEEEEEEEEECCGGGTCCBCCHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeeeccchHHhcCCccCcCCCCCEEEEEecCccCCCCCCCHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999987 4688999999999999999999999999999999999999999999998
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
| |+|+||||||||||||. ++++|||+|| +|++|+++|.|-.+
T Consensus 163 Gi~LvD~K~EFG~~~~G~ivL~DEItPDs~R~W~~-------~~~~DK~~~R~~l~~v~~~Y~ev~~ 222 (230)
T 1kut_A 163 NFELWDIKYEFGLDKDGNVVLGDEISPDTFRLRKK-------GEIFDKDVYRRDLGDPLKKYREVLE 222 (230)
T ss_dssp TEEEEEEEECEEECTTCCEEECSCCSTTTEEEEET-------TCCCCHHHHHHGGGCTTHHHHHHHH
T ss_pred CCEEEEEEEEEEEcCCCCEEEEEeecCCcccccCC-------CcccCHHHHHHhHHHHHHHHHHHHH
Confidence 7 77789999999999993 5679999999 99999988866443
No 29
>3u55_A Phosphoribosylaminoimidazole-succinocarboxamide S; saicar synthetase-like fold, ligase, ATP-binding, NOVO purine biosynthesis; 1.90A {Pyrococcus horikoshii} PDB: 3u54_A
Probab=99.79 E-value=2.9e-20 Score=186.75 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=98.7
Q ss_pred ccccceeccCcceeee---------------ecCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhc
Q psy246 74 ENVGDLLIEGKTKKIH---------------LLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138 (615)
Q Consensus 74 evv~RniaaGs~kkry---------------~lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~ 138 (615)
|+|+|++++||+.++| ++|+|++|||+|+.+++.++++. .+++..+.+++.++|..+.++++++
T Consensus 89 E~VvR~y~tGS~~k~~gl~eg~~l~~Pi~e~~~K~d~~~Dp~I~~~~~~~~gi~-~ee~~~i~~~al~i~~~~~~~~~~~ 167 (238)
T 3u55_A 89 EVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGIS-LDEIKKIEEIALKVNEILKDYLAKK 167 (238)
T ss_dssp EEEEEEECCGGGGGTSSCCTTCEEEEEEEEEEECCTTTTSCEECHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecccccchhcccCCCCCccCCCCccccccccccCCCCCCCHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999997 36889999999999999999974 5789999999999999999999999
Q ss_pred c-----------------ccceeccCCCccccCCCCCCCCcccccccccccc-cCcccchhhhhhhh
Q psy246 139 E-----------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYR-NLSNVTAEGLNQVK 187 (615)
Q Consensus 139 g-----------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fR-dLg~v~~~y~e~vk 187 (615)
| |+|+|||||||||+||.+ +.+++|||+|| |++++.++|.|...
T Consensus 168 GiiLvDtK~EFG~d~~g~ivL~DEiTPDssR~W~~~-----~~~~lDKq~~R~~~~~v~e~Y~e~~~ 229 (238)
T 3u55_A 168 GIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAK-----TKRSLDKDVFRFDKGDLIEAYKEIYE 229 (238)
T ss_dssp TEEEEEEEECEEECTTSCEEECSCCSTTTEEEEETT-----TCCBCSTHHHHTTCSCHHHHHHHHHH
T ss_pred CCEEEeeEEEEEEcCCCCEEEEEecCCCccccccCC-----CccccChHHhhccccchHHHHHHHHH
Confidence 7 777899999999999985 67899999999 99999999988654
No 30
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.6e-20 Score=201.79 Aligned_cols=120 Identities=23% Similarity=0.353 Sum_probs=93.3
Q ss_pred ccccceeccCcceeee----------------ecCCCCCCCeEEeccccccCCcc------CccchhhHHHHHHHHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH----------------LLKSDPNTVVVINKDRITAGDGA------RAHDLKGKAEIATKTNTLV 131 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------~lKdD~~~dpli~~D~i~A~d~a------~~~eI~~k~el~~kin~~l 131 (615)
|+|+||+++||+.+|| ++|+|++|||+|+.||+.+++++ ++++++.+.+++.++|.++
T Consensus 97 EvVvR~~atGS~~kry~gl~eg~~l~~Pi~e~~~K~d~~hDp~Is~e~~~~~g~~~~~~~i~~ee~~~i~~~al~i~~~l 176 (425)
T 2h31_A 97 EWVCRRIATGSFLKRNPGVKEGYKFYPPKVELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEIL 176 (425)
T ss_dssp EEEEESBCCHHHHHHSTTCCTTCBCSSCCEEEESCCCSSCCCCBCHHHHHTTTCEETTEECCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeechhHHhccCCCCCCcCCCCeeeeEeecccCCCCCCCHHHHHHcCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998 36899999999999999999999 9999999999999999999
Q ss_pred HHHHHhcc------------------ccceeccCCCccccCCCCCCCCcccccccccccccCcccchhhhhhhhhhhhhh
Q psy246 132 FDILNAAE------------------MSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWI 193 (615)
Q Consensus 132 fe~le~~g------------------i~LaDeIspDt~RlWd~~~~~i~T~~~lDKd~fRdLg~v~~~y~e~vk~hf~wv 193 (615)
.++|.++| |+|+||||||||||||.++ ..+++|||+||+...+++..+..|+.+|.||
T Consensus 177 ~~~~~~~GiiLvD~K~EFG~~~~~G~ivLaDeitPDs~R~W~~~~----~~~~~DK~~~R~~~~~~~~~l~~v~~~Y~eV 252 (425)
T 2h31_A 177 EKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVIDNDSWRLWPSGD----RSQQKDKQSYRDLKEVTPEGLQMVKKNFEWV 252 (425)
T ss_dssp HHHHGGGSCEEEEEEECEEEETTTCCEEECSCCCTTSEEEECCC----------------------CCSSSCCCCCHHHH
T ss_pred HHHHHHCCCEEEEEEEEEEEecCCCeEEEEEeeCCCccccccCCC----CCCcccHHHHHhccccchhhHHHHHHHHHHH
Confidence 99999976 6678899999999999863 3778999999988888888788888899998
Q ss_pred hhcc
Q psy246 194 ADTL 197 (615)
Q Consensus 194 a~~~ 197 (615)
+.++
T Consensus 253 a~rL 256 (425)
T 2h31_A 253 AERV 256 (425)
T ss_dssp HTTG
T ss_pred HHHh
Confidence 7554
No 31
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A*
Probab=99.54 E-value=5.1e-16 Score=160.73 Aligned_cols=99 Identities=17% Similarity=0.056 Sum_probs=84.9
Q ss_pred ccccceeccCcceeee----------------------------ecCCCCC-CCeEEeccccccCCccCccchhhHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH----------------------------LLKSDPN-TVVVINKDRITAGDGARAHDLKGKAEIA 124 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------------------~lKdD~~-~dpli~~D~i~A~d~a~~~eI~~k~el~ 124 (615)
|+|+|++++||+.++| ++|+|.+ |||+|+.+++.+ +++++++..+.+++
T Consensus 118 E~VvR~y~tGS~~k~y~~~~~v~Gi~lp~Gl~eg~~Lp~Pi~tp~tK~d~~~hD~~Is~~~~~~--~~~~e~~~~i~~~a 195 (306)
T 2cnq_A 118 EVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAE--LVGEDLSRRVAELA 195 (306)
T ss_dssp BEEEEEECCHHHHHHHHHHSEETTEECCTTCCTTCEEEEEEECCBCCCC---CCCBCCHHHHHH--HHCHHHHHHHHHHH
T ss_pred EEEEeeeeccchHHHHhccCccccccCCCCCcccCCCCCCEEEeeecccccCCCCCCCHHHHHH--HcCHHHHHHHHHHH
Confidence 8899999999999987 2588887 999999999988 78999999999999
Q ss_pred HHHHHHHHHHHHhcc------------------ccceecc-CCCccccCCCCC--CCCcccccccccccc-cC
Q psy246 125 TKTNTLVFDILNAAE------------------MSMIKYS-EENEYDKIPPGG--SGLRKELMKDKQVYR-NL 175 (615)
Q Consensus 125 ~kin~~lfe~le~~g------------------i~LaDeI-spDt~RlWd~~~--~~i~T~~~lDKd~fR-dL 175 (615)
.++|..+.+++.++| |+|+||| |||||||||.++ .| ....++|||+|| .|
T Consensus 196 l~i~~~l~~~~~~~GiiLvD~K~EFG~d~~~G~ivL~DEI~TPDSsR~W~~~~y~~G-~~~~s~DKq~~R~~l 267 (306)
T 2cnq_A 196 VKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGASYKVG-ESQDSYDKQFLRDWL 267 (306)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEEESCCSCTTTEEEEETTTCCTT-SCCCCSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEeEEeEEeCCCCcEEEEEeecCCCccceeccccccCC-CCCcccCHHHHHhHH
Confidence 999999999999976 6778899 999999999863 01 123679999999 77
No 32
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus}
Probab=99.46 E-value=4.4e-15 Score=153.40 Aligned_cols=100 Identities=14% Similarity=-0.020 Sum_probs=83.5
Q ss_pred ccccceeccCcceeee----------------------------ecCCCCC-CCeEEeccccccCCccCccchhhHHHHH
Q psy246 74 ENVGDLLIEGKTKKIH----------------------------LLKSDPN-TVVVINKDRITAGDGARAHDLKGKAEIA 124 (615)
Q Consensus 74 evv~RniaaGs~kkry----------------------------~lKdD~~-~dpli~~D~i~A~d~a~~~eI~~k~el~ 124 (615)
|+|+||+++||+.++| ++|+|.+ |||.|+.+++.. .+..+++..+.+++
T Consensus 103 EvVvR~y~tGS~~kry~~~g~vcGi~lp~Gl~eg~~L~~Pi~e~~tK~d~~~hD~~Is~~~~~~--~~g~~~~~~i~~~a 180 (301)
T 3r9r_A 103 ECVARGYLTGSGLLDYQRTGAVCGHVLPQGLGEASRLDPPLFTPATKADIGEHDMNVDFAAVVG--LVGAVRANQLRDET 180 (301)
T ss_dssp BEEEEEEECHHHHHHHHHHSEETTEECCTTCCTTEEEEEEEECCEECCCSSSCCEECCHHHHHH--HHCHHHHHHHHHHH
T ss_pred EEEEEeeecchhHHHhhccCccccccCCccccccccCCCCEEEeeeccccCCCCCCcCHHHHHH--HcCHHHHHHHHHHH
Confidence 8999999999999886 2588877 999999999763 35577889999999
Q ss_pred HHHHHHHHHHHHhcc-----------------ccceecc-CCCccccCCCCC--CCCcccccccccccc-cCc
Q psy246 125 TKTNTLVFDILNAAE-----------------MSMIKYS-EENEYDKIPPGG--SGLRKELMKDKQVYR-NLS 176 (615)
Q Consensus 125 ~kin~~lfe~le~~g-----------------i~LaDeI-spDt~RlWd~~~--~~i~T~~~lDKd~fR-dLg 176 (615)
.++|..+.+++.++| |+|+||| |||||||||+++ +| .+..++|||+|| .|.
T Consensus 181 l~i~~~l~~~~~~~GiiLvD~K~EFG~d~~G~ivL~DEI~TPDSsR~W~~~~y~~g-~~~~s~DKq~~R~~l~ 252 (301)
T 3r9r_A 181 IKIYTRAAAHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQPG-VVQDSFDKQFVRNWLT 252 (301)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEECEEECTTSCEEECSCCSCTTTEEEEEGGGCCTT-SCCCCTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEeeEcCCCcEEEEeecCCCccccccccccccCC-CCCcccchHHHHhhcc
Confidence 999999999999987 7778998 999999998753 11 234679999999 443
No 33
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=95.70 E-value=0.0099 Score=63.20 Aligned_cols=87 Identities=10% Similarity=0.220 Sum_probs=62.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||++..+--...+++.+.|++ |+.+. .....+- +.+.+.+.+ +.+.+.+++ +|||+.|+
T Consensus 53 ~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIavGGG 116 (387)
T 3uhj_A 53 KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGEC---CTSEIERVR-----------KVAIEHGSD-ILVGVGGG 116 (387)
T ss_dssp SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSC---SHHHHHHHH-----------HHHHHHTCS-EEEEESSH
T ss_pred CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCC---CHHHHHHHH-----------HHHhhcCCC-EEEEeCCc
Confidence 4799999998876688999999999 99874 3334555 666676666 555556787 99999988
Q ss_pred CC-CchhhhcccCCCCeeccCCCCC
Q psy246 521 SN-GLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~-~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+. -++.++|....+|+|.||+..+
T Consensus 117 s~~D~AK~iA~~~~~p~i~IPTTag 141 (387)
T 3uhj_A 117 KTADTAKIVAIDTGARIVIAPTIAS 141 (387)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSSCC
T ss_pred HHHHHHHHHHHhcCCCEEEecCccc
Confidence 64 4788898889999999999763
No 34
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=95.30 E-value=0.025 Score=59.43 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=67.0
Q ss_pred CeEEEEeCCCCCH--HHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDL--PFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~--~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.||++..+-. ...+++...|+.-|+.+. .-...+. +.+.+.+.+ +.+.+.+++ +|||+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIav 105 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENP---SFDNVMKAV-----------ERYRNDSFD-FVVGL 105 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSC---BHHHHHHHH-----------HHHTTSCCS-EEEEE
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEe
Confidence 4899999885533 378999999999999875 2234666 888888877 666666787 99999
Q ss_pred cCCC-CCchhhhccc------------------CCCCeeccCCCCC
Q psy246 518 AGKS-NGLGPVISGN------------------TCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~-~~L~gvva~~------------------t~~PVI~vP~~~~ 544 (615)
.|++ .-++.++|.. ..+|+|.|||..|
T Consensus 106 GGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTag 151 (371)
T 1o2d_A 106 GGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAG 151 (371)
T ss_dssp ESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSC
T ss_pred CChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCc
Confidence 8864 3477777765 5789999999854
No 35
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=95.25 E-value=0.012 Score=61.52 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||+++.+.-...+++...|+.-|+++. .+.+-+- +.+.+.+.+ +.+.+.+++ +|||+.|+
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~---~~~~v~~~~-----------~~~~~~~~d-~IIavGGG 96 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEA---SRNEVERIA-----------NIARKAEAA-IVIGVGGG 96 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSC---BHHHHHHHH-----------HHHHHTTCS-EEEEEESH
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeCCh
Confidence 4899999987766788999999999998875 3333343 445565555 555566787 99999886
Q ss_pred C-CCchhhhcccCCCCeeccCCCCC
Q psy246 521 S-NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~-~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+ .-+++++|-...+|+|.|||..+
T Consensus 97 sv~D~aK~iA~~~~~p~i~IPTTa~ 121 (370)
T 1jq5_A 97 KTLDTAKAVADELDAYIVIVPTAAS 121 (370)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEeccccC
Confidence 4 55899999888999999999753
No 36
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=94.81 E-value=0.021 Score=60.14 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=66.8
Q ss_pred CeEEEEeCCCCCHH---HHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSSDLP---FANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~---~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
.+|.||+++.+--. ..+++.+.|+.-|+++... ...|. +.+.+.+.+ +.+.+.+++ +|||
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIa 98 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNP---KDTNVRDGL-----------AVFRREQCD-IIVT 98 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHH-----------HHHHHTTCC-EEEE
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHH-----------HHHHhcCCC-EEEE
Confidence 47999998877554 8999999999999987522 23566 778887777 666677888 9999
Q ss_pred ecCCC-CCchhhhccc------------------CCCCeeccCCCCC
Q psy246 517 VAGKS-NGLGPVISGN------------------TCYPVINCPPLDS 544 (615)
Q Consensus 517 ~AG~~-~~L~gvva~~------------------t~~PVI~vP~~~~ 544 (615)
+.|++ .-++.++|.. ..+|+|.|||..+
T Consensus 99 vGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 145 (387)
T 3bfj_A 99 VGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAG 145 (387)
T ss_dssp EESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTT
T ss_pred eCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 98864 4477777764 5789999999763
No 37
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=94.50 E-value=0.025 Score=59.80 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=66.1
Q ss_pred CeEEEEeCCCCC-HHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD-LPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD-~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.||++..-. ....+++.+.|++-|+++. .-...|- +.+.+.+.+ +.+.+.+++ +|||+.
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavG 96 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNP---TVTAVLEGL-----------KILKDNNSD-FVISLG 96 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSC---BHHHHHHHH-----------HHHHHHTCS-EEEEEE
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHH-----------HHHHhcCcC-EEEEeC
Confidence 479999986422 1267889999999999886 2334666 888888877 666666888 999999
Q ss_pred CCCCC-chhhhcccC------------------CCCeeccCCCCC
Q psy246 519 GKSNG-LGPVISGNT------------------CYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~~-L~gvva~~t------------------~~PVI~vP~~~~ 544 (615)
|++.. ++.++|... .+|+|.|||..+
T Consensus 97 GGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 141 (383)
T 3ox4_A 97 GGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAG 141 (383)
T ss_dssp SHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSS
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCC
Confidence 98643 666776655 799999999763
No 38
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=94.01 E-value=0.023 Score=59.60 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=64.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||++... ....+++.+.|++.++... .| ..|. +.+.+.+.+ +.+.+.+++ +|||+.|+
T Consensus 35 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~v~~~v-~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavGGG 97 (353)
T 3hl0_A 35 SRALVLSTPQQ-KGDAEALASRLGRLAAGVFSEA-AMHT---PVEVTKTAV-----------EAYRAAGAD-CVVSLGGG 97 (353)
T ss_dssp CCEEEECCGGG-HHHHHHHHHHHGGGEEEEECCC-CTTC---BHHHHHHHH-----------HHHHHTTCS-EEEEEESH
T ss_pred CEEEEEecCch-hhHHHHHHHHHhhCCcEEecCc-CCCC---cHHHHHHHH-----------HHHhccCCC-EEEEeCCc
Confidence 37999998765 6788999999987554322 22 2355 667777666 666667888 99999998
Q ss_pred CCC-chhhhcccCCCCeeccCCCCC
Q psy246 521 SNG-LGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~~-L~gvva~~t~~PVI~vP~~~~ 544 (615)
+.. ++..+|....+|+|.|||..+
T Consensus 98 s~iD~aK~iA~~~~~p~i~IPTTat 122 (353)
T 3hl0_A 98 STTGLGKAIALRTDAAQIVIPTTYA 122 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEECSSC
T ss_pred HHHHHHHHHHhccCCCEEEEeCCch
Confidence 654 888999999999999999653
No 39
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=93.60 E-value=0.036 Score=60.06 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=66.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
+|.||+++.+.-...+++.+.|+.-|+.+. .+.+-+- +.+.+.+.. +.+.+ +++ +|||+.|++
T Consensus 93 rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~---~~~~v~~~~-----------~~~~~-~~D-~IIAvGGGS 156 (450)
T 1ta9_A 93 SAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEA---SLVELDKLR-----------KQCPD-DTQ-VIIGVGGGK 156 (450)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCC---CHHHHHHHH-----------TTSCT-TCC-EEEEEESHH
T ss_pred EEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCC---CHHHHHHHH-----------HHHhh-CCC-EEEEeCCcH
Confidence 799999887765788999999999999875 3444444 555666665 65666 787 999998865
Q ss_pred -CCchhhhcccCCCCeeccCCCCC
Q psy246 522 -NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 522 -~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
.-+++++|-...+|+|.|||..+
T Consensus 157 viD~AK~iA~~~giP~I~IPTTAg 180 (450)
T 1ta9_A 157 TMDSAKYIAHSMNLPSIICPTTAS 180 (450)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCS
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCc
Confidence 55899999888999999999753
No 40
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=93.44 E-value=0.03 Score=58.81 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=63.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.+|.||++... ....+++.+.|+..++..-.-...|. +.+.+.+.+ +.+.+.+++ +|||+.|++
T Consensus 37 ~r~liVtd~~~-~~~~~~v~~~L~~~~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavGGGs 100 (358)
T 3jzd_A 37 KRALVLCTPNQ-QAEAERIADLLGPLSAGVYAGAVMHV---PIESARDAT-----------ARAREAGAD-CAVAVGGGS 100 (358)
T ss_dssp SCEEEECCGGG-HHHHHHHHHHHGGGEEEEECCCCTTC---BHHHHHHHH-----------HHHHHHTCS-EEEEEESHH
T ss_pred CeEEEEeCCcH-HHHHHHHHHHhccCCEEEecCCcCCC---CHHHHHHHH-----------HHhhccCCC-EEEEeCCcH
Confidence 37999998875 67788888889875432221122344 666676666 555556788 999999986
Q ss_pred CC-chhhhcccCCCCeeccCCCCC
Q psy246 522 NG-LGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 522 ~~-L~gvva~~t~~PVI~vP~~~~ 544 (615)
.. ++.++|....+|+|.|||..+
T Consensus 101 viD~aK~iA~~~~~p~i~IPTT~t 124 (358)
T 3jzd_A 101 TTGLGKAIALETGMPIVAIPTTYA 124 (358)
T ss_dssp HHHHHHHHHHHHCCCEEEEECSSC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcc
Confidence 54 788999999999999999753
No 41
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=93.18 E-value=0.026 Score=59.34 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=64.6
Q ss_pred CeEEEEeCCCCCH-HHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDL-PFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~-~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|.||+++..-- ...+++...|+.-|+.+... ...|. +.+.+.+.+ +.+.+.+++ +|||+.
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~-----------~~~~~~~~d-~IIavG 96 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNP---TITVVKEGL-----------GVFQNSGAD-YLIAIG 96 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSC---BHHHHHHHH-----------HHHHHHTCS-EEEEEE
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHH-----------HHHHhcCcC-EEEEeC
Confidence 3799999865532 37899999999989877522 23455 777887777 666667888 999998
Q ss_pred CCCC-CchhhhcccC--------------------CCCeeccCCCCC
Q psy246 519 GKSN-GLGPVISGNT--------------------CYPVINCPPLDS 544 (615)
Q Consensus 519 G~~~-~L~gvva~~t--------------------~~PVI~vP~~~~ 544 (615)
|++. -++.++|... .+|+|.|||..+
T Consensus 97 GGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 97 GGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp SHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 8643 4677776644 789999999763
No 42
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=93.00 E-value=0.074 Score=56.47 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=64.4
Q ss_pred CeEEEEeCCCCCH--HHHHHHHHHhhccCCCeeEEE--ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDL--PFANKIDDANHDPQWSDEQIL--SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~--~~~~~~~~~l~~~gi~~~~V~--saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.||+++.+=. ...+++...|++-|+.+.... ..+- +.+.+.+.+ +.+.+.+++ +|||+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIav 108 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNP---VLSKVHEAV-----------EVAKKEKVE-AVLGV 108 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHH-----------HHHHHTTCS-EEEEE
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEe
Confidence 3799999854422 378999999999898875221 2355 777777777 666677888 99999
Q ss_pred cCCCC-Cchhhhccc------------------CCCCeeccCCCCC
Q psy246 518 AGKSN-GLGPVISGN------------------TCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~-~L~gvva~~------------------t~~PVI~vP~~~~ 544 (615)
.|++. -++.++|.. ..+|+|.|||..+
T Consensus 109 GGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTag 154 (407)
T 1vlj_A 109 GGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISA 154 (407)
T ss_dssp ESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCS
T ss_pred CChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 88653 467777763 5789999999763
No 43
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=92.72 E-value=0.067 Score=56.80 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=61.6
Q ss_pred CeEEEEeCCCCCHH--HHHHHHHHhhccCCCeeEEE--ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLP--FANKIDDANHDPQWSDEQIL--SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~--~~~~~~~~l~~~gi~~~~V~--saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.||+|..+-.. ..+++.+.|+ |+++...- ..|. +.+.+.+.+ +.+.+.+++ +|||+
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIav 113 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNP---AYETLMNAV-----------KLVREQKVT-FLLAV 113 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSC---BHHHHHHHH-----------HHHHHHTCC-EEEEE
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCc---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 48999998765443 7888888887 77764222 2355 777777776 666666887 99999
Q ss_pred cCCCC-Cchhhhccc---------------------CCCCeeccCCCCC
Q psy246 518 AGKSN-GLGPVISGN---------------------TCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~-~L~gvva~~---------------------t~~PVI~vP~~~~ 544 (615)
.|++. -++.++|.. ..+|+|.|||..+
T Consensus 114 GGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag 162 (408)
T 1oj7_A 114 GGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 162 (408)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred CCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence 88753 466666663 4589999999763
No 44
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=92.47 E-value=0.16 Score=54.30 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=66.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEe---cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCC--EEE
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILS---ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKN--VVF 514 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~s---aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~--~V~ 514 (615)
..+|.||++....-.+.+++...|++-|+++. -+.. .++ +.+.+.++. +.+.+.+++ .+|
T Consensus 62 ~~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~k---t~~~v~~~~-----------~~l~~~~~~R~d~I 127 (390)
T 3okf_A 62 KQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYK---TLETFNTVM-----------SFLLEHNYSRDVVV 127 (390)
T ss_dssp TCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGC---BHHHHHHHH-----------HHHHHTTCCTTCEE
T ss_pred CCEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCc---hHHHHHHHH-----------HHHHhcCCCcCcEE
Confidence 35899999999877799999999999999887 3332 355 667776666 444444552 389
Q ss_pred EEecCCC-CCchhhhcc--cCCCCeeccCCC
Q psy246 515 IAVAGKS-NGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 515 Ia~AG~~-~~L~gvva~--~t~~PVI~vP~~ 542 (615)
||+.|++ .-+++++|+ ....|+|.|||.
T Consensus 128 IAvGGGsv~D~ak~~Aa~~~rgip~I~IPTT 158 (390)
T 3okf_A 128 IALGGGVIGDLVGFAAACYQRGVDFIQIPTT 158 (390)
T ss_dssp EEEESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred EEECCcHHhhHHHHHHHHhcCCCCEEEeCCC
Confidence 9988874 457888874 678999999996
No 45
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=92.46 E-value=0.099 Score=55.36 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=64.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhcc------CCCee-EEEec---ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC--
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDP------QWSDE-QILSA---NLDNVARDEVQIMKRLSLVVFEILVMKSWSSG-- 509 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~------gi~~~-~V~sa---HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~-- 509 (615)
.+|.||+++...--+.+++...|+.. |+.+. -+... |+ +.+.+.++. +.+.+.+
T Consensus 37 ~k~liVtd~~v~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k---~~~~v~~~~-----------~~~~~~~~~ 102 (393)
T 1sg6_A 37 TTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSK---SRQTKADIE-----------DWMLSQNPP 102 (393)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGS---SHHHHHHHH-----------HHHHTSSSC
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCC---CHHHHHHHH-----------HHHHHcCCC
Confidence 47999998765444788888888776 77765 44444 66 777777766 5555556
Q ss_pred C---CEEEEEecCCC-CCchhhhcc--cCCCCeeccCCCC
Q psy246 510 K---NVVFIAVAGKS-NGLGPVISG--NTCYPVINCPPLD 543 (615)
Q Consensus 510 ~---~~V~Ia~AG~~-~~L~gvva~--~t~~PVI~vP~~~ 543 (615)
+ + +|||+.|++ .-+++++|+ ....|+|.|||..
T Consensus 103 ~~r~d-~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTl 141 (393)
T 1sg6_A 103 CGRDT-VVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTL 141 (393)
T ss_dssp CCTTC-EEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSH
T ss_pred CCCCC-EEEEECCcHHHHHHHHHHHHhcCCCCEEEECCch
Confidence 6 6 999998864 569999995 5689999999953
No 46
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=92.14 E-value=0.14 Score=53.14 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=64.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEE-ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQIL-SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~-saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||++..+.-...+++...|++-|+++.... ..+- +.+.+. .+ +.+.+.+++ +|||+.|+
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~---~~~~v~-----------~~-~~~~~~~~d-~IIavGGG 98 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNI---DFDEIG-----------TN-AFKIPAEVD-ALIGIGGG 98 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCC---BHHHHH-----------HH-HTTSCTTCC-EEEEEESH
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCC---CHHHHH-----------HH-HHhhhcCCC-EEEEECCh
Confidence 3899999988766788999999999999886332 2333 333332 22 344456777 99999886
Q ss_pred C-CCchhhhcccCCCCeeccCCCCC
Q psy246 521 S-NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~-~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+ .-+++++|-...+|+|.|||..+
T Consensus 99 sv~D~aK~vA~~~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 99 KAIDAVKYMAFLRKLPFISVPTSTS 123 (354)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCCS
T ss_pred HHHHHHHHHHhhcCCCEEEecCccc
Confidence 4 55899999888999999999764
No 47
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=90.35 E-value=0.46 Score=49.79 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=61.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEe---cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC--CEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILS---ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK--NVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~s---aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~--~~V~I 515 (615)
.+|.||+++...-.+.+++...|+.- +.++ .+.. .|+ +.+.+.+.. +.+.+.++ ..++|
T Consensus 35 ~k~liVtd~~v~~~~~~~v~~~L~~~-~~~~~~~~~~ge~~k---~~~~v~~~~-----------~~~~~~~~~r~d~iI 99 (368)
T 2gru_A 35 DQYIMISDSGVPDSIVHYAAEYFGKL-APVHILRFQGGEEYK---TLSTVTNLQ-----------ERAIALGANRRTAIV 99 (368)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHTTT-SCEEEEEECCSGGGC---SHHHHHHHH-----------HHHHHTTCCTTEEEE
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHhc-cceeEEEeCCCCCCC---CHHHHHHHH-----------HHHHhcCCCCCcEEE
Confidence 48999999888777899999999766 6664 3322 355 556666555 33333342 24999
Q ss_pred EecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 516 AVAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 516 a~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
|+.|+ ..-+++++|+ ....|+|.|||.
T Consensus 100 alGGGsv~D~ak~~Aa~~~rgip~i~IPTT 129 (368)
T 2gru_A 100 AVGGGLTGNVAGVAAGMMFRGIALIHVPTT 129 (368)
T ss_dssp EEESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred EECChHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 99876 5568999995 558999999994
No 48
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=89.16 E-value=0.13 Score=54.31 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=57.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
+|.||+|... ....+++.+.|+ .+. .-...|- +.+.+.+.+ +.+.+.+++ +|||+.|+
T Consensus 39 rvliVtd~~~-~~~~~~v~~~L~----~~~~f~~v~~~p---~~~~v~~~~-----------~~~~~~~~D-~IIavGGG 98 (364)
T 3iv7_A 39 KVMVIAGERE-MSIAHKVASEIE----VAIWHDEVVMHV---PIEVAERAR-----------AVATDNEID-LLVCVGGG 98 (364)
T ss_dssp SEEEECCGGG-HHHHHHHTTTSC----CSEEECCCCTTC---BHHHHHHHH-----------HHHHHTTCC-EEEEEESH
T ss_pred EEEEEECCCH-HHHHHHHHHHcC----CCEEEcceecCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeCCc
Confidence 6999998864 445555544444 222 1122355 777777776 666677898 99999998
Q ss_pred CCC-chhhhcccCCCCeeccCCCCC
Q psy246 521 SNG-LGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~~~-L~gvva~~t~~PVI~vP~~~~ 544 (615)
+.. ++..+|....+|+|.|||..+
T Consensus 99 s~iD~aK~iA~~~~~P~i~IPTTat 123 (364)
T 3iv7_A 99 STIGLAKAIAMTTALPIVAIPTTYA 123 (364)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHHHHHhccCCCEEEEcCCcc
Confidence 654 788899999999999999653
No 49
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=88.57 E-value=0.32 Score=50.60 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=56.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEe---cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILS---ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~s---aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~ 514 (615)
.+|.||+++...-.+.+++...| .-| .++ .+.. .|. +.+.+.+.. +.+.+.++ + +|
T Consensus 32 ~~~liVtd~~~~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p---~~~~v~~~~-----------~~~~~~~~~r~d-~i 94 (354)
T 1xah_A 32 DQSFLLIDEYVNQYFANKFDDIL-SYE-NVHKVIIPAGEKTK---TFEQYQETL-----------EYILSHHVTRNT-AI 94 (354)
T ss_dssp SCEEEEEEHHHHHHHHHHHC--------CEEEEEECSGGGGC---SHHHHHHHH-----------HHHHTTCCCTTC-EE
T ss_pred CeEEEEECCcHHHHHHHHHHHHH-hcC-CeEEEEECCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCc-eE
Confidence 47999998654444677777777 667 454 3332 355 667777666 55555666 6 99
Q ss_pred EEecCCC-CCchhhhcc--cCCCCeeccCCCCC
Q psy246 515 IAVAGKS-NGLGPVISG--NTCYPVINCPPLDS 544 (615)
Q Consensus 515 Ia~AG~~-~~L~gvva~--~t~~PVI~vP~~~~ 544 (615)
||+.|++ .-+++++|+ ....|+|.|||...
T Consensus 95 IavGGGsv~D~ak~vA~~~~rgip~i~IPTT~~ 127 (354)
T 1xah_A 95 IAVGGGATGDFAGFVAATLLRGVHFIQVPTTIL 127 (354)
T ss_dssp EEEESHHHHHHHHHHHHHBTTCCEEEEEECSTT
T ss_pred EEECChHHHHHHHHHHHHhccCCCEEEECCccc
Confidence 9998864 558899984 57899999999763
No 50
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=87.92 E-value=0.11 Score=54.54 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=57.4
Q ss_pred CeEEEEeCCCCCHHH-HHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPF-ANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~-~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+|.||+++..--.. .+++...|+.-|+.+ .+.+-+- +.+.+.+.. +.+.. +++ +|||+.|+
T Consensus 42 ~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~-~~~~ge~---~~~~v~~~~-----------~~~~~-~~d-~IIavGGG 104 (376)
T 1kq3_A 42 ERAFVVIDDFVDKNVLGENFFSSFTKVRVNK-QIFGGEC---SDEEIERLS-----------GLVEE-ETD-VVVGIGGG 104 (376)
T ss_dssp SEEEEEECHHHHHHTTCTTGGGGCSSSEEEE-EECCSSC---BHHHHHHHH-----------TTCCT-TCC-EEEEEESH
T ss_pred CeEEEEECccHHhhccHHHHHHHHHHcCCeE-EEeCCCC---CHHHHHHHH-----------HHHhc-CCC-EEEEeCCc
Confidence 479999986432222 455556666656333 2333333 455666665 55666 777 99999886
Q ss_pred C-CCchhhhcccCCCCeeccCCCCC
Q psy246 521 S-NGLGPVISGNTCYPVINCPPLDS 544 (615)
Q Consensus 521 ~-~~L~gvva~~t~~PVI~vP~~~~ 544 (615)
+ .-++.++|-...+|+|.|||..+
T Consensus 105 sv~D~aK~iA~~~~~p~i~IPTTa~ 129 (376)
T 1kq3_A 105 KTLDTAKAVAYKLKKPVVIVPTIAS 129 (376)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEecCccc
Confidence 4 45889999888999999999763
No 51
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=87.76 E-value=0.35 Score=51.24 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=56.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEE--EecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC---CCEEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQI--LSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG---KNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V--~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~---~~~V~Ia 516 (615)
.++.||++..-- .....+.|+.-|+.+... ...+- +.+.+.+.+ +.+.+.+ ++ +|||
T Consensus 54 ~~~liVtd~~~~---~~~l~~~L~~~g~~~~~f~~v~~~p---t~~~v~~~~-----------~~~~~~~~~~~D-~IIa 115 (375)
T 3rf7_A 54 DFVVFLVDDVHQ---HKPLAARVPNKAHDLVIYVNVDDEP---TTVQVDELT-----------AQVKAFNTKLPV-SVVG 115 (375)
T ss_dssp CCEEEEEEGGGT---TSHHHHHSCCCTTSEEEEECCSSCC---BHHHHHHHH-----------HHHHHHCSSCCS-EEEE
T ss_pred CeEEEEECchhh---hhHHHHHHHhcCCeEEEEeCCCCCC---CHHHHHHHH-----------HHHHHhCCCCCC-EEEE
Confidence 357778765321 124556676667776522 23455 777777776 5555445 87 9999
Q ss_pred ecCCCCC-chhhhcccC------------------CCCeeccCCCCC
Q psy246 517 VAGKSNG-LGPVISGNT------------------CYPVINCPPLDS 544 (615)
Q Consensus 517 ~AG~~~~-L~gvva~~t------------------~~PVI~vP~~~~ 544 (615)
+.|+|.. ++.++|... .+|+|.||+..+
T Consensus 116 vGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 162 (375)
T 3rf7_A 116 LGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSG 162 (375)
T ss_dssp EESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCS
T ss_pred eCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCc
Confidence 9998754 677777654 689999999763
No 52
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=85.00 E-value=20 Score=34.78 Aligned_cols=128 Identities=7% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++ ..+.+.+.+.+++.|+... +...+. .++...+++ +.+..++++-||+..
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI~~~ 79 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVL-LGQIDA---PPRGTQQLS-----------RLVSEGRVDGVLLQR 79 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEE-EEECCS---TTHHHHHHH-----------HHHHSCSSSEEEECC
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEE-EEeCCC---ChHHHHHHH-----------HHHHhCCCcEEEEec
Confidence 4579999988777 5677888889999998774 555665 666666565 555567888455443
Q ss_pred cCCCC--CchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCH
Q psy246 518 AGKSN--GLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDF 583 (615)
Q Consensus 518 AG~~~--~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~ 583 (615)
...+. .+.- +.. ..|||.+-.... . +++++.+|+-.++.+++-.++.. ...
T Consensus 80 ~~~~~~~~~~~-l~~--~iPvV~i~~~~~-----------~-~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~ 144 (303)
T 3kke_A 80 REDFDDDMLAA-VLE--GVPAVTINSRVP-----------G-RVGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHD 144 (303)
T ss_dssp CTTCCHHHHHH-HHT--TSCEEEESCCCT-----------T-CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCH
T ss_pred CCCCcHHHHHH-HhC--CCCEEEECCcCC-----------C-CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCc
Confidence 33332 1222 222 788887643321 1 45667777555544444444432 224
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 ~l~~kl~~~~~~~~~ 598 (615)
....|++.|+..+.+
T Consensus 145 ~~~~R~~Gf~~al~~ 159 (303)
T 3kke_A 145 TAQRRKEGYLETLAS 159 (303)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 567788888876654
No 53
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=84.50 E-value=0.83 Score=48.37 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=61.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEe---cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILS---ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~s---aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|.||++....- ..+++...|+.-|+++. -+.. .++ +.+.+.++. +.+.+. .....+ ++||+
T Consensus 44 ~rvlIVtd~~v~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~k---t~~~v~~~~-------~~l~~~-~~~r~d-~IIav 110 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-TAEEIRKRLAGKGVDAHRIEIPDAEAGK---DLPVVGFIW-------EVLGRI-GIGRKD-ALVSL 110 (368)
T ss_dssp SEEEEEECGGGHH-HHHHHHHHHHHTTCEEEEEECCSGGGGG---BHHHHHHHH-------HHHHHH-TCCTTC-EEEEE
T ss_pred CEEEEEECccHHH-HHHHHHHHHHhcCCcceEEEeCCCCCCC---CHHHHHHHH-------HHHHHc-CCCCCc-EEEEE
Confidence 5899999998754 58999999999999876 3332 345 556666555 222221 111245 89999
Q ss_pred cCCC-CCchhhhcc--cCCCCeeccCCCC
Q psy246 518 AGKS-NGLGPVISG--NTCYPVINCPPLD 543 (615)
Q Consensus 518 AG~~-~~L~gvva~--~t~~PVI~vP~~~ 543 (615)
.|++ .-+++++|+ ....|+|.|||..
T Consensus 111 GGGsv~D~ak~~Aa~~~rgip~i~IPTTl 139 (368)
T 3qbe_A 111 GGGAATDVAGFAAATWLRGVSIVHLPTTL 139 (368)
T ss_dssp ESHHHHHHHHHHHHHGGGCCEEEEEECSH
T ss_pred CChHHHHHHHHHHHHhccCCcEEEECCCC
Confidence 8885 458888884 4689999999863
No 54
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=84.19 E-value=0.14 Score=53.23 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=57.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEE--ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQIL--SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~--saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~Ia 516 (615)
.+|.||+++...-.+.+++...|+.-++.+..+- ..|. +.+.+.++. +.+.+.++ + +|||
T Consensus 27 ~~~livtd~~v~~~~~~~v~~~L~~~~~~~~~~~~~e~~k---~~~~v~~~~-----------~~~~~~~~~r~d-~iIa 91 (343)
T 3clh_A 27 QKALIISDSIVAGLHLPYLLERLKALEVRVCVIESGEKYK---NFHSLERIL-----------NNAFEMQLNRHS-LMIA 91 (343)
T ss_dssp SCEEEEEEHHHHTTTHHHHHTTEECSCEEEEEECSSGGGC---SHHHHHHHH-----------HHHHHTTCCTTC-EEEE
T ss_pred CEEEEEECCcHHHHHHHHHHHHHHhCCcEEEEeCCCCCCC---CHHHHHHHH-----------HHHHhcCCCCCc-eEEE
Confidence 3688888765433356777777755544332221 2355 667776666 44555566 6 9999
Q ss_pred ecCCC-CCchhhhc--ccCCCCeeccCCC
Q psy246 517 VAGKS-NGLGPVIS--GNTCYPVINCPPL 542 (615)
Q Consensus 517 ~AG~~-~~L~gvva--~~t~~PVI~vP~~ 542 (615)
+.|++ .-+++++| -....|+|.|||.
T Consensus 92 vGGGsv~D~ak~~A~~~~rgip~i~IPTT 120 (343)
T 3clh_A 92 LGGGVISDMVGFASSIYFRGIDFINIPTT 120 (343)
T ss_dssp EESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred ECChHHHHHHHHHHHHhccCCCEEEeCCc
Confidence 98864 56899999 5678999999998
No 55
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=84.17 E-value=16 Score=34.86 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=76.8
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++- .+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ .||..
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi~ 68 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTA-IALDAGR---NDQTQVSQI-----------QTLIAQKPD-AIIEQ 68 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHHCCS-EEEEE
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEE-EEEcCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 45899999887763 45678888889999766 4555666 666665555 444456787 55544
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc--c------------C
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA--Q------------R 581 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~--~------------~ 581 (615)
..........+.- ....||+.+-... |.+++++..|+-..+..++-.++. . .
T Consensus 69 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~------------~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~ 136 (291)
T 3l49_A 69 LGNLDVLNPWLQKINDAGIPLFTVDTAT------------PHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYS 136 (291)
T ss_dssp SSCHHHHHHHHHHHHHTTCCEEEESCCC------------TTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTT
T ss_pred CCChhhhHHHHHHHHHCCCcEEEecCCC------------CCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCC
Confidence 4332333444432 3478888874322 345677777654444444433333 1 2
Q ss_pred CHHHHHHHHHHHHHHH
Q psy246 582 DFFIWSKLRMYQTKLY 597 (615)
Q Consensus 582 d~~l~~kl~~~~~~~~ 597 (615)
.+....|++.|+..+.
T Consensus 137 ~~~~~~R~~gf~~~l~ 152 (291)
T 3l49_A 137 VPVCKIRYDQMKYVLE 152 (291)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 2455667777776554
No 56
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=83.40 E-value=34 Score=33.13 Aligned_cols=131 Identities=11% Similarity=-0.051 Sum_probs=79.4
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|++++.+.++ ..+.+.+...+++.|+... +...+. .++...+++ +.+..++++ .||..+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~~ 66 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVF-VQSANG---NEETQMSQI-----------ENMINRGVD-VLVIIP 66 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEE-EEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEE-EECCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeC
Confidence 478888876544 5677788888999997764 555565 666665555 445556788 566555
Q ss_pred CCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCc-eeeeecChhhHHHHHHHHH-c------------cCC
Q psy246 519 GKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGI-ACSTVTAPSNAALAAAQIL-A------------QRD 582 (615)
Q Consensus 519 G~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv-~v~tv~~~~nAa~~A~~Il-~------------~~d 582 (615)
.....+...+.. ....|||.+-.... .+++ +.+..|+-..+.++|-.++ . ...
T Consensus 67 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~ 135 (313)
T 3m9w_A 67 YNGQVLSNVVKEAKQEGIKVLAYDRMIN-----------DADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVD 135 (313)
T ss_dssp SSTTSCHHHHHHHHTTTCEEEEESSCCT-----------TSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTC
T ss_pred CChhhhHHHHHHHHHCCCeEEEECCcCC-----------CCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 555555555543 34689987754322 1334 5666665444433333333 1 133
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYIA 599 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~~ 599 (615)
.....|++.|+..+.+.
T Consensus 136 ~~~~~R~~Gf~~~l~~~ 152 (313)
T 3m9w_A 136 NNAKLFRAGQMKVLKPY 152 (313)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 55677888888776554
No 57
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=82.17 E-value=1 Score=46.95 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=58.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEE--ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC---CEEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQIL--SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK---NVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~--saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~---~~V~Ia 516 (615)
.+|.||+++...- +.+++...|+ +++. ..+- ..|. +.+.+.+.. +.+.+.++ + +|||
T Consensus 29 ~kvliVtd~~v~~-~~~~v~~~L~-~~~~-~~~~~ge~~~---~~~~v~~~~-----------~~~~~~~~~r~d-~IIa 90 (348)
T 1ujn_A 29 GPAALLFDRRVEG-FAQEVAKALG-VRHL-LGLPGGEAAK---SLEVYGKVL-----------SWLAEKGLPRNA-TLLV 90 (348)
T ss_dssp SCEEEEEEGGGHH-HHHHHHHHHT-CCCE-EEECCSGGGS---SHHHHHHHH-----------HHHHHHTCCTTC-EEEE
T ss_pred CEEEEEECCcHHH-HHHHHHHHhc-cCeE-EEECCCCCCC---CHHHHHHHH-----------HHHHHcCCCCCC-EEEE
Confidence 3799999887666 8889999988 6655 2121 2455 666666665 33333333 5 9999
Q ss_pred ecCC-CCCchhhhcc--cCCCCeeccCCC
Q psy246 517 VAGK-SNGLGPVISG--NTCYPVINCPPL 542 (615)
Q Consensus 517 ~AG~-~~~L~gvva~--~t~~PVI~vP~~ 542 (615)
+.|+ ..-+++++|+ ....|+|.|||.
T Consensus 91 vGGGsv~D~ak~~A~~~~rgip~i~IPTT 119 (348)
T 1ujn_A 91 VGGGTLTDLGGFVAATYLRGVAYLAFPTT 119 (348)
T ss_dssp EESHHHHHHHHHHHHHBTTCCEEEEEECS
T ss_pred ECCcHHHHHHHHHHHHhccCCCEEEecCc
Confidence 9775 5668899985 568999999995
No 58
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=81.52 E-value=5.6 Score=38.08 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=75.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
.++++++....-...++++. .+++... .|... +.++..+.+ +.. ..|++ |||+-.|.
T Consensus 5 ~~I~~iapy~~l~~~~~~i~---~e~~~~i-~i~~~-----~l~~~v~~a-----------~~~-~~~~d-VIISRGgt- 61 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLA---LEKNFIP-ITKTA-----SLTRASKIA-----------FGL-QDEVD-AIISRGAT- 61 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHH---HHHTCEE-EEEEC-----CHHHHHHHH-----------HHH-TTTCS-EEEEEHHH-
T ss_pred CcEEEEEccHHHHHHHHHHH---hhhCCce-EEEEC-----CHHHHHHHH-----------HHh-cCCCe-EEEECChH-
Confidence 46777776655555555544 4455533 33322 445555555 555 67888 99998666
Q ss_pred CCchhhhcccCCCCeeccCCCCC-chhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC--------CHHHHHHHHHH
Q psy246 522 NGLGPVISGNTCYPVINCPPLDS-TGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR--------DFFIWSKLRMY 592 (615)
Q Consensus 522 ~~L~gvva~~t~~PVI~vP~~~~-g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~--------d~~l~~kl~~~ 592 (615)
+..+-.+++.|||.+|++.- =+.+|...-+...-|++++-.+..+.+-.-..+|++. ..++.+.++..
T Consensus 62 ---a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l 138 (196)
T 2q5c_A 62 ---SDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKV 138 (196)
T ss_dssp ---HHHHHTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHH
T ss_pred ---HHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHH
Confidence 44555678899999998653 2233333334445466666666666666667888753 23566655544
Q ss_pred HH
Q psy246 593 QT 594 (615)
Q Consensus 593 ~~ 594 (615)
+.
T Consensus 139 ~~ 140 (196)
T 2q5c_A 139 KT 140 (196)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 59
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=81.10 E-value=39 Score=32.24 Aligned_cols=130 Identities=9% Similarity=0.070 Sum_probs=77.8
Q ss_pred CCCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 440 TDNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...+|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ .||.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi 70 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSV-LLANTAE---DIVREREAV-----------GQFFERRVD-GLIL 70 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEE
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHHCCCC-EEEE
Confidence 35689999988877 456677888889999766 4666666 666666665 455556788 4444
Q ss_pred ecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------C
Q psy246 517 VAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------D 582 (615)
Q Consensus 517 ~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d 582 (615)
..... ....+. .....||+.+-.... .++++++..|+-..+.+++-.++... .
T Consensus 71 ~~~~~--~~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~ 137 (291)
T 3egc_A 71 APSEG--EHDYLRTELPKTFPIVAVNRELR-----------IPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGL 137 (291)
T ss_dssp CCCSS--CCHHHHHSSCTTSCEEEESSCCC-----------CTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTS
T ss_pred eCCCC--ChHHHHHhhccCCCEEEEecccC-----------CCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 33222 233332 235778886643321 23566777765554444444443321 2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
+....|++.|+..+.+
T Consensus 138 ~~~~~R~~gf~~~l~~ 153 (291)
T 3egc_A 138 MTSRERLKGFRAAMSA 153 (291)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4566777777766544
No 60
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=80.05 E-value=21 Score=33.98 Aligned_cols=109 Identities=10% Similarity=0.068 Sum_probs=65.4
Q ss_pred CCCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 440 TDNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...+|++++.+.++ ..+.+.+...+++.|+... +...+. .++...+.+ +.+..++++ .||.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~ 70 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEAL-VATSQN---SRISEREQI-----------LEFVHLKVD-AIFI 70 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEE-EEECSS---CHHHHHHHH-----------HHHHHTTCS-EEEE
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEE-EECCCC---CHHHHHHHH-----------HHHHHcCCC-EEEE
Confidence 34689999988777 3456677788889998764 555666 666666555 444556788 5555
Q ss_pred ecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHH
Q psy246 517 VAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAA 574 (615)
Q Consensus 517 ~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A 574 (615)
.......+...+.. ....||+.+-....+ +++++++..|+-..+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----------~~~~~~V~~D~~~~g~~~~ 120 (293)
T 3l6u_A 71 TTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS----------DAVVSSITSNNQMIGEQLA 120 (293)
T ss_dssp ECSCTTTTHHHHHHHHHTTCCEEEESSCCCC----------TTCSEEEEECHHHHHHHHH
T ss_pred ecCChHHHHHHHHHHHHcCCCEEEecCCCCC----------CcceeEEecCHHHHHHHHH
Confidence 54444444444432 347888877433211 2356777776544443333
No 61
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=79.31 E-value=12 Score=36.76 Aligned_cols=128 Identities=12% Similarity=0.056 Sum_probs=76.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhh-hhcCCCCEEEEEecCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMK-SWSSGKNVVFIAVAGK 520 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~-~~~~~~~~V~Ia~AG~ 520 (615)
.++++++...-.. .+..+..+++...+ .+... +.++....+ +. .+..+++ |||+-.|.
T Consensus 14 ~ii~i~~~~~L~~---~~~~i~~e~~~~~~I~vi~~-----~le~av~~a-----------~~~~~~~~~d-VIISRGgt 73 (225)
T 2pju_A 14 PVIWTVSVTRLFE---LFRDISLEFDHLANITPIQL-----GFEKAVTYI-----------RKKLANERCD-AIIAAGSN 73 (225)
T ss_dssp CEEEEECCHHHHH---HHHHHHTTTTTTCEEEEECC-----CHHHHHHHH-----------HHHTTTSCCS-EEEEEHHH
T ss_pred CEEEEEchHHHHH---HHHHHHHhhCCCceEEEecC-----cHHHHHHHH-----------HHHHhcCCCe-EEEeCChH
Confidence 4666665544334 45555666666555 55433 345444444 33 3334687 99998766
Q ss_pred CCCchhhhcccCCCCeeccCCCCC-chhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC--------CHHHHHHHHH
Q psy246 521 SNGLGPVISGNTCYPVINCPPLDS-TGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR--------DFFIWSKLRM 591 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP~~~~-g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~--------d~~l~~kl~~ 591 (615)
+ ..+-.+++.|||.+|++.- =+.+|...-+...-|++++-.+..+.+-.-..+|++. ..++.+.++.
T Consensus 74 a----~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~ 149 (225)
T 2pju_A 74 G----AYLKSRLSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINE 149 (225)
T ss_dssp H----HHHHTTCSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred H----HHHHhhCCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHH
Confidence 4 4555678899999998643 2233333334455577777777777777778888864 3456665554
Q ss_pred HHH
Q psy246 592 YQT 594 (615)
Q Consensus 592 ~~~ 594 (615)
.+.
T Consensus 150 l~~ 152 (225)
T 2pju_A 150 LKA 152 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 62
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=77.05 E-value=1.8 Score=45.12 Aligned_cols=77 Identities=8% Similarity=0.007 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHH
Q psy246 280 VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKV 357 (615)
Q Consensus 280 ~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (615)
++++..+++++++.++.+.| --.|+.-|||.+- + +++.+++.+|++| ++++..+|..++|+ .++
T Consensus 198 l~~~~~~~~~~~a~~i~~aL----g~~G~~~vEf~~~----~-~~~~v~EinpR~~~sg~~t~~~~~~s~fe-----~~~ 263 (355)
T 3eth_A 198 ANAQQQARAEEMLSAIMQEL----GYVGVMAMECFVT----P-QGLLINELAPRVHNSGHWTQNGASISQFE-----LHL 263 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----TCCEEEEEEEEEE----T-TEEEEEEEESSCCGGGTTHHHHSSSCHHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHC----CCeeEEEEEEEEE----C-CcEEEEEeeCCCCCCccEEeeeecCCHHH-----HHH
Confidence 57888888999999888776 2367778887763 2 5799999999999 68899999999997 678
Q ss_pred Hhhhhhhhhccee
Q psy246 358 WASLNCVLVDMKI 370 (615)
Q Consensus 358 ~~~~~~~lvd~~~ 370 (615)
++.+|.+|.|++.
T Consensus 264 ra~~G~pl~~~~~ 276 (355)
T 3eth_A 264 RAITDLPLPQPVV 276 (355)
T ss_dssp HHHTTCCCCCCCC
T ss_pred HHHcCCCCCCccc
Confidence 8889999988654
No 63
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=76.34 E-value=63 Score=31.92 Aligned_cols=144 Identities=16% Similarity=0.086 Sum_probs=83.3
Q ss_pred hHHHHHHHhhcccCC--------CCCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHh
Q psy246 425 NFTWIADTLASVKRP--------TDNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRL 493 (615)
Q Consensus 425 nY~eVA~~L~~~k~~--------~~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~ 493 (615)
.-.++++.+...+.+ ....|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++
T Consensus 44 rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~i-- 117 (344)
T 3kjx_A 44 RVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQP-VVGVTDY---LPEKEEKVL-- 117 (344)
T ss_dssp HHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEE-EEEECTT---CHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH--
Confidence 344456666543322 24579999988776 566778888899999876 4666666 777666665
Q ss_pred hHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhc--ccCCCCeecc-CCCCCchhhhhhhhcCCCCceeeeecChhhH
Q psy246 494 SLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVIS--GNTCYPVINC-PPLDSTGRDVWSSLNLPAGIACSTVTAPSNA 570 (615)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva--~~t~~PVI~v-P~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nA 570 (615)
+.+..++++-||+.....+. ..+. .....||+.+ -... ++..+++.+|+-.++
T Consensus 118 ---------~~l~~~~vdGiIi~~~~~~~---~~~~~l~~~~iPvV~i~~~~~------------~~~~~~V~~D~~~~~ 173 (344)
T 3kjx_A 118 ---------YEMLSWRPSGVIIAGLEHSE---AARAMLDAAGIPVVEIMDSDG------------KPVDAMVGISHRRAG 173 (344)
T ss_dssp ---------HHHHTTCCSEEEEECSCCCH---HHHHHHHHCSSCEEEEEECSS------------CCSSEEEEECHHHHH
T ss_pred ---------HHHHhCCCCEEEEECCCCCH---HHHHHHHhCCCCEEEEeCCCC------------CCCCCEEEECcHHHH
Confidence 44455678845554322221 2222 2356888876 2111 234566666655444
Q ss_pred HHHHHHHHcc-----------C--CHHHHHHHHHHHHHHHH
Q psy246 571 ALAAAQILAQ-----------R--DFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 571 a~~A~~Il~~-----------~--d~~l~~kl~~~~~~~~~ 598 (615)
..++-.++.. . +.....|++.|+..+.+
T Consensus 174 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~ 214 (344)
T 3kjx_A 174 REMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGK 214 (344)
T ss_dssp HHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHH
Confidence 4443333322 1 34566788888776654
No 64
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=76.31 E-value=37 Score=31.81 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=73.5
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ .+|...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi~~ 66 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQL-LIASSDD---QPDSERQLQ-----------QLFRARRCD-ALFVAS 66 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEECC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEec
Confidence 579999988776 345667778888999876 4555666 676666665 455556788 445444
Q ss_pred CCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------CHH
Q psy246 519 GKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------DFF 584 (615)
Q Consensus 519 G~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d~~ 584 (615)
..... ...+. .....||+.+-.... +++++++..|+-.++..++-.++... ...
T Consensus 67 ~~~~~-~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~ 134 (272)
T 3o74_A 67 CLPPE-DDSYRELQDKGLPVIAIDRRLD-----------PAHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSV 134 (272)
T ss_dssp CCCSS-CCHHHHHHHTTCCEEEESSCCC-----------TTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHH
T ss_pred Ccccc-HHHHHHHHHcCCCEEEEccCCC-----------ccccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCcc
Confidence 33122 22222 234778886543221 23466776676555544444444321 234
Q ss_pred HHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKL 596 (615)
Q Consensus 585 l~~kl~~~~~~~ 596 (615)
...|+..|+..+
T Consensus 135 ~~~R~~gf~~~l 146 (272)
T 3o74_A 135 SQARAGGFDEAL 146 (272)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 556666666544
No 65
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=76.10 E-value=44 Score=31.90 Aligned_cols=128 Identities=8% Similarity=0.122 Sum_probs=70.5
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++...++ ..+.+.+...+++.|+... +..... .++...+++ +.+..++++ .+|..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~~ 71 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRIL-LCNTES---DLARSRSCL-----------TLLSGKMVD-GVITM 71 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-EEECTT---CHHHHHHHT-----------HHHHTTCCS-EEEEC
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEE-EEeCCC---CHHHHHHHH-----------HHHHhCCCC-EEEEe
Confidence 4589999987666 3455677778888897654 444554 565554444 444456787 55544
Q ss_pred cCC-CC-CchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCH
Q psy246 518 AGK-SN-GLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDF 583 (615)
Q Consensus 518 AG~-~~-~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~ 583 (615)
... +. .+. .+. ...||+.+-.... .++++++..|+-..+..++-.++.. ...
T Consensus 72 ~~~~~~~~~~-~l~--~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~ 137 (285)
T 3c3k_A 72 DALSELPELQ-NII--GAFPWVQCAEYDP-----------LSTVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQ 137 (285)
T ss_dssp CCGGGHHHHH-HHH--TTSSEEEESSCCT-----------TSSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSH
T ss_pred CCCCChHHHH-HHh--cCCCEEEEccccC-----------CCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccc
Confidence 332 11 122 122 5678887632211 1346666666554444443333332 123
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 ~l~~kl~~~~~~~~~ 598 (615)
....|++.|+..+.+
T Consensus 138 ~~~~R~~gf~~~l~~ 152 (285)
T 3c3k_A 138 YAQHRESGYLNRLKF 152 (285)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 456777777765543
No 66
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=75.28 E-value=42 Score=31.82 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=65.2
Q ss_pred CCCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 440 TDNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...+|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ .+|.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi 69 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIG-VLFDANA---DIEREKTLL-----------RAIGSRGFD-GLIL 69 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEE-EEEECTT---CHHHHHHHH-----------HHHHTTTCS-EEEE
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHhCCCC-EEEE
Confidence 35689999988776 345667777888898766 4556666 666655555 555556788 4444
Q ss_pred ecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHc
Q psy246 517 VAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILA 579 (615)
Q Consensus 517 ~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~ 579 (615)
..... ...+.- ....|||.+-.... .++++++.+|+-..+..++-.++.
T Consensus 70 ~~~~~---~~~~~~l~~~~iPvV~i~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~ 120 (276)
T 3jy6_A 70 QSFSN---PQTVQEILHQQMPVVSVDREMD-----------ACPWPQVVTDNFEAAKAATTAFRQ 120 (276)
T ss_dssp ESSCC---HHHHHHHHTTSSCEEEESCCCT-----------TCSSCEEECCHHHHHHHHHHHHHT
T ss_pred ecCCc---HHHHHHHHHCCCCEEEEecccC-----------CCCCCEEEEChHHHHHHHHHHHHH
Confidence 43332 444432 34788887643221 234666666655544444444443
No 67
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=74.15 E-value=62 Score=30.90 Aligned_cols=130 Identities=13% Similarity=0.093 Sum_probs=69.7
Q ss_pred CCCeEEEEeCCCCC-----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 440 TDNLVVLALGSSSD-----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
....|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...++. +.+..++++-||
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI 71 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHL-VVTPHIH---AKDSMVPIR-----------YILETGSADGVI 71 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEE-EECCBSS---GGGTTHHHH-----------HHHHHTCCSEEE
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEE-EEecCCc---chhHHHHHH-----------HHHHcCCccEEE
Confidence 35689999987664 345667777888888765 3444444 344333333 333445787444
Q ss_pred EEecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------
Q psy246 515 IAVAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------ 580 (615)
Q Consensus 515 Ia~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------ 580 (615)
+....... ..+. .....|||.+-.... .++++++.+|+-..+..++-.++..
T Consensus 72 i~~~~~~~---~~~~~l~~~~iPvV~i~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 137 (288)
T 3gv0_A 72 ISKIEPND---PRVRFMTERNMPFVTHGRSDM-----------GIEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPS 137 (288)
T ss_dssp EESCCTTC---HHHHHHHHTTCCEEEESCCCS-----------SCCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred EecCCCCc---HHHHHHhhCCCCEEEECCcCC-----------CCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCc
Confidence 43222111 2222 234788887643321 2345666666554444444333332
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy246 581 RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 ~d~~l~~kl~~~~~~~~~ 598 (615)
.......|+..|+..+.+
T Consensus 138 ~~~~~~~R~~gf~~~l~~ 155 (288)
T 3gv0_A 138 RFSFHDHARKGFNRGIRD 155 (288)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 123456677777766544
No 68
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=74.06 E-value=62 Score=30.98 Aligned_cols=133 Identities=10% Similarity=-0.027 Sum_probs=75.8
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++- .+.+.+...+++.|+...-+...+. .++...+++ +.+..++++ .+|..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~ 68 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQY---DIQEQITVL-----------EQAIAKNPA-GIAIS 68 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSS---CHHHHHHHH-----------HHHHHHCCS-EEEEC
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcC---CHHHHHHHH-----------HHHHHhCCC-EEEEc
Confidence 34688888766653 3456677788889987753355666 676666665 444445787 55555
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc-------------CC
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ-------------RD 582 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-------------~d 582 (615)
......+...+.- ....|||.+-....+ +..++++..|+-..+.+++-.++.. .+
T Consensus 69 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----------~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~ 138 (305)
T 3g1w_A 69 AIDPVELTDTINKAVDAGIPIVLFDSGAPD----------SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQ 138 (305)
T ss_dssp CSSTTTTHHHHHHHHHTTCCEEEESSCCTT----------SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTC
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCC----------CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 4444444444432 346888876543211 1236677766544443333333332 23
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
.....|++.|+..+..
T Consensus 139 ~~~~~R~~gf~~~l~~ 154 (305)
T 3g1w_A 139 LNHQERTTGFKETLEA 154 (305)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 4566777777776554
No 69
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=73.01 E-value=44 Score=32.14 Aligned_cols=131 Identities=10% Similarity=-0.080 Sum_probs=76.3
Q ss_pred CCeEEEEeCCCCC----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 441 DNLVVLALGSSSD----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 441 ~~~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++-|||.
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdGiIi~ 77 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTI-LIANTGG---SSEREVEIW-----------KMFQSHRIDGVLYV 77 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCSEEEEE
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHhCCCCEEEEe
Confidence 4689999987765 278889999999999776 4555665 666665555 44455678755554
Q ss_pred ecCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCHH
Q psy246 517 VAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDFF 584 (615)
Q Consensus 517 ~AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~~ 584 (615)
.......+. .......|||.+-.... -+.+++++.+|+-..+..++-.++.. ....
T Consensus 78 ~~~~~~~~~--~~~~~~iPvV~~~~~~~----------~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~ 145 (301)
T 3miz_A 78 TMYRRIVDP--ESGDVSIPTVMINCRPQ----------TRELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLG 145 (301)
T ss_dssp EEEEEECCC--CCTTCCCCEEEEEEECS----------STTSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHH
T ss_pred cCCccHHHH--HHHhCCCCEEEECCCCC----------CCCCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchh
Confidence 433222111 11234677776532111 12256777777655544444444432 2235
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
...|++.|+..+.+
T Consensus 146 ~~~R~~Gf~~al~~ 159 (301)
T 3miz_A 146 AELRLDAFRRTTSE 159 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56778888776544
No 70
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=72.81 E-value=53 Score=32.31 Aligned_cols=131 Identities=7% Similarity=-0.030 Sum_probs=73.8
Q ss_pred CCCeEEEEeCC--CCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 440 TDNLVVLALGS--SSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 440 ~~~~V~Ii~gs--~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
....|++++.+ .++ ..+.+.+...+++.|+.. .+...+. .++.-.+++ +.+..++++-+|
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI 124 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQL-LLADGKH---SAEEERQAI-----------QYLLDLRCDAIM 124 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEE-EEEECTT---SHHHHHHHH-----------HHHHHTTCSEEE
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHhCCCCEEE
Confidence 34689999987 444 356777888889999766 4555666 666655555 444556788444
Q ss_pred EEecCCCCCchhhh--cccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------
Q psy246 515 IAVAGKSNGLGPVI--SGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------ 580 (615)
Q Consensus 515 Ia~AG~~~~L~gvv--a~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------ 580 (615)
| ...... -..+. ......||+.+-.... .+.++++..|+-..+..++-.++..
T Consensus 125 i-~~~~~~-~~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 191 (338)
T 3dbi_A 125 I-YPRFLS-VDEIDDIIDAHSQPIMVLNRRLR-----------KNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSM 191 (338)
T ss_dssp E-CCSSSC-HHHHHHHHHHCSSCEEEESSCCS-----------SSGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred E-eCCCCC-hHHHHHHHHcCCCCEEEEcCCCC-----------CCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 4 332222 12222 2234578886643221 1234566666544444444444332
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy246 581 RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 ~d~~l~~kl~~~~~~~~~ 598 (615)
.......|+..|+..+.+
T Consensus 192 ~~~~~~~R~~Gf~~al~~ 209 (338)
T 3dbi_A 192 DSPTSIERLAGYKDALAQ 209 (338)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 224566777788776544
No 71
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=72.09 E-value=2 Score=45.06 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHH
Q psy246 280 VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKV 357 (615)
Q Consensus 280 ~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (615)
++++..+++++++.++.+.| --.|+.-+|+++ +++|++.+++..|+++ ++.+..+|..++|+ .++
T Consensus 246 l~~~~~~~~~~~a~~i~~~L----g~~G~~~ve~~~----~~dg~~~v~EiNpR~~~sg~~~~~~~~~s~~~-----~~~ 312 (403)
T 3k5i_A 246 VSDAINQKAQELARKAVAAF----DGKGVFGVEMFL----LEDDSIMLCEIASRIHNSGHYTIEGCALSQFD-----AHL 312 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHTS----CCSEEEEEEEEE----ETTSCEEEEEEESSCCGGGTTHHHHBSSCHHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHc----CCeeEEEEEEEE----eCCCcEEEEEeecCCCCCCceeeeecCCCHHH-----HHH
Confidence 56777788888888887766 124666677665 4678999999999999 68899999888886 567
Q ss_pred Hhhhhhhhhcce
Q psy246 358 WASLNCVLVDMK 369 (615)
Q Consensus 358 ~~~~~~~lvd~~ 369 (615)
++.+|.+|-++.
T Consensus 313 ra~~G~pl~~~~ 324 (403)
T 3k5i_A 313 RAILDLPIPAQS 324 (403)
T ss_dssp HHHTTCCCCGGG
T ss_pred HHHcCCCCCccc
Confidence 777888887753
No 72
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=71.59 E-value=3.3 Score=43.81 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHH
Q psy246 280 VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKV 357 (615)
Q Consensus 280 ~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (615)
++++..+++++++.++.+.| --.|+.-+|+.+ +++|++.+++..|+++ ++.+..+|..++|+ .++
T Consensus 258 l~~~~~~~~~~~a~~i~~~l----g~~G~~~vE~~~----~~dG~~~v~EiNpR~~~sg~~t~~~~~~s~~~-----~~~ 324 (419)
T 4e4t_A 258 ADTARVEEAQQAAVRIADTL----GYVGVLCVEFFV----LEDGSFVANEMAPRPHNSGHYTVDACATSQFE-----QQV 324 (419)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----TCCEEEEEEEEE----ETTCCEEEEEEESSCCGGGTTHHHHBSSCHHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHC----CCeeEEEEEEEE----eCCCCEEEEEEeCCCCCCCCeEeeccCCCHHH-----HHH
Confidence 56777788888888877765 235677777665 5678999999999998 57788899999887 577
Q ss_pred Hhhhhhhhhccee
Q psy246 358 WASLNCVLVDMKI 370 (615)
Q Consensus 358 ~~~~~~~lvd~~~ 370 (615)
++.+|.+|-|+..
T Consensus 325 ra~~G~pl~~~~~ 337 (419)
T 4e4t_A 325 RAMTRMPLGNPRQ 337 (419)
T ss_dssp HHHTTCCCCCCCB
T ss_pred HHHcCCCCCCccc
Confidence 8888888887543
No 73
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=71.53 E-value=65 Score=31.03 Aligned_cols=130 Identities=11% Similarity=-0.033 Sum_probs=74.4
Q ss_pred CCCeEEEEeCC-----CCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCC
Q psy246 440 TDNLVVLALGS-----SSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKN 511 (615)
Q Consensus 440 ~~~~V~Ii~gs-----~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (615)
....|++++.+ .++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd 85 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYST-RMTVSEN---SGDLYHEVK-----------TMIQSKSVD 85 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEE-EECCCSS---HHHHHHHHH-----------HHHHTTCCS
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHhCCCC
Confidence 34689999988 555 345677888888899765 4555555 555555555 555566788
Q ss_pred EEEEEecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc---------
Q psy246 512 VVFIAVAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ--------- 580 (615)
Q Consensus 512 ~V~Ia~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~--------- 580 (615)
-|||.....+. ..+. .....|||.+-.... +++++++.+|+-.++..++-.++..
T Consensus 86 giIi~~~~~~~---~~~~~l~~~~iPvV~i~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 151 (305)
T 3huu_A 86 GFILLYSLKDD---PIEHLLNEFKVPYLIVGKSLN-----------YENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQ 151 (305)
T ss_dssp EEEESSCBTTC---HHHHHHHHTTCCEEEESCCCS-----------STTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEEEeCCcCCc---HHHHHHHHcCCCEEEECCCCc-----------ccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 44443222222 2222 234678887643221 3456777777655544444444432
Q ss_pred ---CCHHHHHHHHHHHHHHHH
Q psy246 581 ---RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 ---~d~~l~~kl~~~~~~~~~ 598 (615)
.......|++.|+..+.+
T Consensus 152 ~~~~~~~~~~R~~Gf~~~l~~ 172 (305)
T 3huu_A 152 ESGHYAVTEDRSVGFKQYCDD 172 (305)
T ss_dssp ESSCBHHHHHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHH
Confidence 123456777777766543
No 74
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=69.30 E-value=36 Score=32.34 Aligned_cols=84 Identities=7% Similarity=0.011 Sum_probs=48.8
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++- .+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ .+|..
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-gii~~ 70 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTL-ILGNAWN---NLEKQRAYL-----------SMMAQKRVD-GLLVM 70 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEE
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeE-EEEcCCC---ChHHHHHHH-----------HHHHhCCCC-EEEEE
Confidence 45799999776552 35566777788888765 4455555 666655555 444446787 44444
Q ss_pred cCCC-CCchhhhcccCCCCeeccC
Q psy246 518 AGKS-NGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 518 AG~~-~~L~gvva~~t~~PVI~vP 540 (615)
.... ..+-..+......|||.+-
T Consensus 71 ~~~~~~~~~~~l~~~~~iPvV~~~ 94 (289)
T 1dbq_A 71 CSEYPEPLLAMLEEYRHIPMVVMD 94 (289)
T ss_dssp CSCCCHHHHHHHHHTTTSCEEEEE
T ss_pred eccCCHHHHHHHHhccCCCEEEEc
Confidence 3332 2233333323568888764
No 75
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=68.67 E-value=13 Score=32.72 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=40.8
Q ss_pred HHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC----Cchhh---h
Q psy246 457 ANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN----GLGPV---I 528 (615)
Q Consensus 457 ~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~----~L~gv---v 528 (615)
.+++...++..|++++ .+.. .. ..+.+. +.++..+++.|+++--|+++ -++++ |
T Consensus 85 l~~~~~~~~~~g~~~~~~v~~-G~---~~~~I~--------------~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~v 146 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDIIVV-GI---PHEEIV--------------KIAEDEGVDIIIMGSHGKTNLKEILLGSVTENV 146 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE-EC---HHHHHH--------------HHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEcC-CC---HHHHHH--------------HHHHHcCCCEEEEcCCCCCCccceEecchHHHH
Confidence 4455566677888887 4433 22 233333 34455678866666666543 13333 3
Q ss_pred cccCCCCeeccCCCC
Q psy246 529 SGNTCYPVINCPPLD 543 (615)
Q Consensus 529 a~~t~~PVI~vP~~~ 543 (615)
.-++.+||+-||...
T Consensus 147 l~~~~~pVlvv~~~~ 161 (162)
T 1mjh_A 147 IKKSNKPVLVVKRKN 161 (162)
T ss_dssp HHHCCSCEEEECCCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 346789999999754
No 76
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=68.62 E-value=74 Score=30.38 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=72.7
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ .+|..
T Consensus 20 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-gii~~ 83 (293)
T 2iks_A 20 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQL-LIACSED---QPDNEMRCI-----------EHLLQRQVD-AIIVS 83 (293)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred CcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEE-EEEcCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 4589999877666 345667777888899765 4555555 566555554 444446787 44444
Q ss_pred cCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------CH
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------DF 583 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d~ 583 (615)
...... ..++. .....||+.+-.... .++++++..|+-..+..++-.++... ..
T Consensus 84 ~~~~~~-~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~ 151 (293)
T 2iks_A 84 TSLPPE-HPFYQRWANDPFPIVALDRALD-----------REHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELS 151 (293)
T ss_dssp CSSCTT-CHHHHTTTTSSSCEEEEESCCC-----------TTTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSH
T ss_pred CCCCCc-HHHHHHHHhCCCCEEEECCccC-----------cCCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccc
Confidence 333222 22322 234678877632221 13466777776655555544444331 23
Q ss_pred HHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLY 597 (615)
Q Consensus 584 ~l~~kl~~~~~~~~ 597 (615)
....|++.|+..+.
T Consensus 152 ~~~~R~~Gf~~~l~ 165 (293)
T 2iks_A 152 VSFLREQGFRTAWK 165 (293)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHH
Confidence 45667777776543
No 77
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=65.97 E-value=43 Score=33.14 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=53.3
Q ss_pred CCeEEEEeCCCCC----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhc-CCCCEEEE
Q psy246 441 DNLVVLALGSSSD----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWS-SGKNVVFI 515 (615)
Q Consensus 441 ~~~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~-~~~~~V~I 515 (615)
..+|++++-+.++ ..+.+.+.+.+++.|+... +...+. .++...+.+ +..... ++++ .||
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~-~~~~~~---~~~~~~~~i----------~~~i~~~~~vD-giI 67 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLR-ILYAER---DPQNTLQQA----------RELFQGRDKPD-YLM 67 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEE-EEECTT---CHHHHHHHH----------HHHHHSSSCCS-EEE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEE-EEECCC---CHHHHHHHH----------HHHHhcCCCCC-EEE
Confidence 3579999998887 3556777788889998774 445666 666554444 122232 5788 555
Q ss_pred EecCCCCCchhhhcc--cCCCCeeccCC
Q psy246 516 AVAGKSNGLGPVISG--NTCYPVINCPP 541 (615)
Q Consensus 516 a~AG~~~~L~gvva~--~t~~PVI~vP~ 541 (615)
.+. .......++.- ....|||.+-.
T Consensus 68 i~~-~~~~~~~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 68 LVN-EQYVAPQILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp EEC-CSSHHHHHHHHHTTSCCEEEEEES
T ss_pred EeC-chhhHHHHHHHHHhCCCcEEEEcC
Confidence 443 33445555543 45789987644
No 78
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=65.73 E-value=97 Score=29.68 Aligned_cols=134 Identities=9% Similarity=-0.040 Sum_probs=75.5
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecc--cCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSAN--LDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saH--R~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
-+|++++.+.++- .+.+.+.+.+++.|+... +.... . .++...+.+ +.+..++++ .||.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giii 67 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQ-ILAPPGAN---DVPKQVQFI-----------ESALATYPS-GIAT 67 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEE-EECCSSSC---CHHHHHHHH-----------HHHHHTCCS-EEEE
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEE-EECCCCcC---CHHHHHHHH-----------HHHHHcCCC-EEEE
Confidence 4789998887553 345567777888897764 44444 4 566655555 444556788 5555
Q ss_pred ecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC-------------
Q psy246 517 VAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------- 581 (615)
Q Consensus 517 ~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------- 581 (615)
......++...+.- ....|||.+-....+.. -.+.++.+..|+-..+.+++-.++...
T Consensus 68 ~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~-------~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~ 140 (297)
T 3rot_A 68 TIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKT-------KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQP 140 (297)
T ss_dssp CCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTT-------TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCT
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEcCCCcccc-------ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 55445555555532 34789987654332100 023466666664444333333333322
Q ss_pred -CHHHHHHHHHHHHHHHH
Q psy246 582 -DFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 582 -d~~l~~kl~~~~~~~~~ 598 (615)
......|++.|+..+..
T Consensus 141 ~~~~~~~R~~Gf~~~l~~ 158 (297)
T 3rot_A 141 GHIGLEKRAYGIKTILQD 158 (297)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHh
Confidence 24456777777766544
No 79
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=65.44 E-value=41 Score=34.89 Aligned_cols=130 Identities=7% Similarity=-0.043 Sum_probs=72.0
Q ss_pred CCeEEEEeC-CCCC----HHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 441 DNLVVLALG-SSSD----LPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 441 ~~~V~Ii~g-s~SD----~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
..+|++|+- +.+| ..+.+.+..+.+++|-.++ .++.... ..++..+.+ +.+..+|++ +|
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~---~~~d~~~~l-----------~~l~~~g~d-~I 90 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVA---EGADAERSI-----------KRIARAGNK-LI 90 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCC---TTHHHHHHH-----------HHHHHTTCS-EE
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCC---CHHHHHHHH-----------HHHHHCCCC-EE
Confidence 457888884 4567 3355666667788994444 3333332 333344444 444557898 66
Q ss_pred EEec-CCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeec---ChhhHHHHHHHHH---------ccC
Q psy246 515 IAVA-GKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVT---APSNAALAAAQIL---------AQR 581 (615)
Q Consensus 515 Ia~A-G~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~---~~~nAa~~A~~Il---------~~~ 581 (615)
|+.. +++..+--+..-+...|++.|-... -.+.+.+++.+ +++-|+++|+.+. +..
T Consensus 91 i~~g~~~~~~~~~vA~~~Pdv~fv~id~~~-----------~~~Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~ 159 (356)
T 3s99_A 91 FTTSFGYMDPTVKVAKKFPDVKFEHATGYK-----------TADNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVP 159 (356)
T ss_dssp EECSGGGHHHHHHHHTTCTTSEEEEESCCC-----------CBTTEEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCC
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEEEeccc-----------cCCcEEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 6653 3444443333434456677663211 12445555554 5566666665543 234
Q ss_pred CHHHHHHHHHHHHHH
Q psy246 582 DFFIWSKLRMYQTKL 596 (615)
Q Consensus 582 d~~l~~kl~~~~~~~ 596 (615)
.|.+..++..|+.-.
T Consensus 160 ~p~v~~~~~GF~~G~ 174 (356)
T 3s99_A 160 VPEVVQGINSFMLGA 174 (356)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 577777788887654
No 80
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=65.39 E-value=96 Score=29.96 Aligned_cols=130 Identities=8% Similarity=0.003 Sum_probs=68.0
Q ss_pred eEEEEeCCCCC--HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 443 LVVLALGSSSD--LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 443 ~V~Ii~gs~SD--~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
+|++++.+.++ ..+.+.+...+++.|+...-....+. .++...+++ +.+..++++ .+|.....
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~~~~ 67 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKE---DINAQLQML-----------ESFIAEGVN-GIAIAPSD 67 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCSSS---CHHHHHHHH-----------HHHHHTTCS-EEEECCSS
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeCCC
Confidence 58888776655 23445667777888976542222244 565555554 333445787 56655444
Q ss_pred CCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc--------------CCHH
Q psy246 521 SNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ--------------RDFF 584 (615)
Q Consensus 521 ~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~--------------~d~~ 584 (615)
+..+...+.- ....|||.+-....+ .+.++++..|+-..+.+++-.++.. ....
T Consensus 68 ~~~~~~~~~~~~~~~iPvV~~~~~~~~----------~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~ 137 (313)
T 2h3h_A 68 PTAVIPTIKKALEMGIPVVTLDTDSPD----------SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMN 137 (313)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSCCTT----------SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHH
T ss_pred hHHHHHHHHHHHHCCCeEEEeCCCCCC----------cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCcc
Confidence 4444344432 356898876432210 1245566665443333333222222 2344
Q ss_pred HHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLY 597 (615)
Q Consensus 585 l~~kl~~~~~~~~ 597 (615)
...|++.|+..+.
T Consensus 138 ~~~R~~gf~~~l~ 150 (313)
T 2h3h_A 138 SLQRIQGFKDAIK 150 (313)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 5667777776543
No 81
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=64.76 E-value=81 Score=29.80 Aligned_cols=130 Identities=13% Similarity=-0.008 Sum_probs=75.6
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|++++.+.++- .+.+.+.+.+++.|+.. .+...+. .++...+++ +.+..++++ .+|...
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi~~ 79 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSM-LLTSTNN---NPDNERRGL-----------ENLLSQHID-GLIVEP 79 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTCCS-EEEECC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHHCCCC-EEEEec
Confidence 6899999887763 56778888889999876 4556666 666666555 444556788 455443
Q ss_pred CCCC---Cchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc-----------CC
Q psy246 519 GKSN---GLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ-----------RD 582 (615)
Q Consensus 519 G~~~---~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-----------~d 582 (615)
..+. .....+. .....|||.+-.... .++++++..|+-..+-.++-.++.. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-----------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 148 (298)
T 3tb6_A 80 TKSALQTPNIGYYLNLEKNGIPFAMINASYA-----------ELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADD 148 (298)
T ss_dssp SSTTSCCTTHHHHHHHHHTTCCEEEESSCCT-----------TCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSS
T ss_pred ccccccCCcHHHHHHHHhcCCCEEEEecCcC-----------CCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCC
Confidence 3221 2223332 234788887643221 1246677666554444444333332 22
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
.....|+..|+..+.+
T Consensus 149 ~~~~~R~~gf~~~l~~ 164 (298)
T 3tb6_A 149 TQGVKRMNGFIQAHRE 164 (298)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3445677777766544
No 82
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=64.20 E-value=96 Score=30.28 Aligned_cols=130 Identities=13% Similarity=-0.001 Sum_probs=69.8
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhcc-CCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDP-QWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~-gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
..+|++++.+ ++- .+.+.+...+++. |+.. .+...+. .++...+.+ +.+..++++ .+|.
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l-~i~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi 68 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSV-EIRSAGD---DNSKQAEDV-----------HYFMDEGVD-LLII 68 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEE
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEE-EEeCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEE
Confidence 4579999887 542 3455667777777 8765 4555555 565555444 333446787 5555
Q ss_pred ecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc--------------
Q psy246 517 VAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ-------------- 580 (615)
Q Consensus 517 ~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-------------- 580 (615)
.......+...+.- ....||+.+-....+ ++.++++..|+-..+..++-.++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----------~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~ 138 (325)
T 2x7x_A 69 SANEAAPMTPIVEEAYQKGIPVILVDRKILS----------DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLS 138 (325)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEESSCCSS----------SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCT
T ss_pred eCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC----------cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCC
Confidence 43332222233322 246898877432211 2345666666544443333333331
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy246 581 RDFFIWSKLRMYQTKLY 597 (615)
Q Consensus 581 ~d~~l~~kl~~~~~~~~ 597 (615)
.......|++.|+..+.
T Consensus 139 ~~~~~~~R~~Gf~~al~ 155 (325)
T 2x7x_A 139 GSTPAMERHQGFMAAIS 155 (325)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 12345667777776553
No 83
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=64.04 E-value=1e+02 Score=29.25 Aligned_cols=133 Identities=8% Similarity=-0.058 Sum_probs=74.3
Q ss_pred CCeEEEEeCCC-CC---HHHHHHHHHHhhcc-CCCee-EEE-ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEE
Q psy246 441 DNLVVLALGSS-SD---LPFANKIDDANHDP-QWSDE-QIL-SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVV 513 (615)
Q Consensus 441 ~~~V~Ii~gs~-SD---~~~~~~~~~~l~~~-gi~~~-~V~-saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V 513 (615)
..+|++++.+. ++ ..+.+.+...+++. |+... ... ..+. .++...+++ +.+..++++ .
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-g 72 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPY---DYNSFVATS-----------QAVIEEQPD-G 72 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSS---CHHHHHHHH-----------HHHHTTCCS-E
T ss_pred cceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCC---CHHHHHHHH-----------HHHHhcCCC-E
Confidence 45799888775 33 34556677778887 77776 332 3444 666665555 555557788 5
Q ss_pred EEEecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC----------
Q psy246 514 FIAVAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR---------- 581 (615)
Q Consensus 514 ~Ia~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~---------- 581 (615)
||.......+....+.. ....|||.+-....+ +..++.+..|+-..+..++-.++...
T Consensus 73 iii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----------~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 142 (304)
T 3gbv_A 73 VMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKD----------APPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFR 142 (304)
T ss_dssp EEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTT----------SCCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCC----------CCceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 55554433344444432 347888876543311 12356666664444333333333221
Q ss_pred --------CHHHHHHHHHHHHHHHH
Q psy246 582 --------DFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 582 --------d~~l~~kl~~~~~~~~~ 598 (615)
......|++.|+..+.+
T Consensus 143 ~~~~g~~~~~~~~~R~~gf~~~l~~ 167 (304)
T 3gbv_A 143 KIHEGVIGSNQQESREIGFRQYMQE 167 (304)
T ss_dssp EEBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred ecccCCccchhHHHHHHHHHHHHHh
Confidence 14556777777776544
No 84
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=63.96 E-value=25 Score=35.13 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=50.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc------CCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL------DNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR------~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
.+|+|++- .-....+...+.++..|+++..+.+.-. -.+.++.+.+++ +.+...|++.||+
T Consensus 147 ~rvgvltp--~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~-----------~~l~~~gadaIvL 213 (273)
T 2xed_A 147 QRVALVTP--YMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAA-----------RSLDLSEVDALVI 213 (273)
T ss_dssp CEEEEEEC--SCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHH-----------HHSCCTTCSEEEE
T ss_pred CeEEEEcC--ChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHH-----------HHHhhCCCCEEEE
Confidence 48999973 3344455667778888988764333322 022444444444 4456678998888
Q ss_pred E-ecCCCCC-chhhhcccCCCCeec
Q psy246 516 A-VAGKSNG-LGPVISGNTCYPVIN 538 (615)
Q Consensus 516 a-~AG~~~~-L~gvva~~t~~PVI~ 538 (615)
+ ++++... +..-+...+.+|||.
T Consensus 214 g~CT~l~~~~~~~~le~~lg~PVid 238 (273)
T 2xed_A 214 SCAVQMPSLPLVETAEREFGIPVLS 238 (273)
T ss_dssp ESSSSSCCTTHHHHHHHHHSSCEEE
T ss_pred cCCCCcchHHhHHHHHHHhCCCEEc
Confidence 8 8888653 344444445677763
No 85
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=63.62 E-value=57 Score=30.92 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=72.9
Q ss_pred CCCeEEEEeCC-----CCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCC
Q psy246 440 TDNLVVLALGS-----SSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKN 511 (615)
Q Consensus 440 ~~~~V~Ii~gs-----~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (615)
...+|++++.+ .++ ..+.+.+.+.+++.|+.. .+...+. .++...+++ +.+..++++
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~~~~~~vd 71 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYAL-YMSTGET---EEEIFNGVV-----------KMVQGRQIG 71 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEE-EECCCCS---HHHHHHHHH-----------HHHHTTCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEE-EEEeCCC---CHHHHHHHH-----------HHHHcCCCC
Confidence 35689999988 444 255667788888999765 4555555 555555555 555556788
Q ss_pred EEEEEecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc---------
Q psy246 512 VVFIAVAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ--------- 580 (615)
Q Consensus 512 ~V~Ia~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~--------- 580 (615)
.+|........ ..+. .....|||.+-.... -+.+++++..|+-..+..++-.++..
T Consensus 72 -giIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~----------~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 138 (292)
T 3k4h_A 72 -GIILLYSREND--RIIQYLHEQNFPFVLIGKPYD----------RKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIG 138 (292)
T ss_dssp -EEEESCCBTTC--HHHHHHHHTTCCEEEESCCSS----------CTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred -EEEEeCCCCCh--HHHHHHHHCCCCEEEECCCCC----------CCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEe
Confidence 44443332221 2222 235788887643221 12236666666544444433333322
Q ss_pred ---CCHHHHHHHHHHHHHHHH
Q psy246 581 ---RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 ---~d~~l~~kl~~~~~~~~~ 598 (615)
.......|++.|+..+..
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~~ 159 (292)
T 3k4h_A 139 GGSDLLVTRDRLAGMSDALKL 159 (292)
T ss_dssp SCTTBHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHH
Confidence 123456777777766544
No 86
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=63.41 E-value=3 Score=41.77 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=51.4
Q ss_pred CeEEEEeCCCCC-----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSSD-----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD-----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
.+|+|++|+.|+ +..+..+..+|++.|+.+..|-.... ....+ .....+.||++
T Consensus 14 ~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~---~~~~l------------------~~~~~D~v~~~ 72 (317)
T 4eg0_A 14 GKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAER---PLSAL------------------KDEGFVRAFNA 72 (317)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS---CTTHH------------------HHTTCCEEEEC
T ss_pred ceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCc---hHHHh------------------hhcCCCEEEEc
Confidence 479999999998 44678899999999998865553221 11111 12356767777
Q ss_pred ecCC---CCCchhhhcccCCCCeeccCCCC
Q psy246 517 VAGK---SNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 517 ~AG~---~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
.-|. .+.+.+++. ...+|++|+++..
T Consensus 73 ~hg~~ge~~~~~~~le-~~gip~~g~~~~~ 101 (317)
T 4eg0_A 73 LHGGYGENGQIQGALD-FYGIRYTGSGVLG 101 (317)
T ss_dssp CCSGGGTSSHHHHHHH-HHTCEESSCCHHH
T ss_pred CCCCCCchHHHHHHHH-HcCCCeeCcCHHH
Confidence 7664 334444443 3468888877544
No 87
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=63.25 E-value=73 Score=31.66 Aligned_cols=131 Identities=7% Similarity=-0.090 Sum_probs=68.4
Q ss_pred CCeEEEEeC--CCCCHH----HHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 441 DNLVVLALG--SSSDLP----FANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 441 ~~~V~Ii~g--s~SD~~----~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
..+|++++- +.+|.+ +.+.+..+++++|+... ++..+- ..+. .+.+ +.+..++++ .|
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~-~~~~~~---~~~~-~~~l-----------~~l~~~~~d-gI 66 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCK-YVTAST---DAEY-VPSL-----------SAFADENMG-LV 66 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEE-EEECCS---GGGH-HHHH-----------HHHHHTTCS-EE
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEE-EEeCCC---HHHH-HHHH-----------HHHHHcCCC-EE
Confidence 347888874 677743 34566677788997653 333333 3332 3333 344456788 55
Q ss_pred EEe-cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecC---hhhHHHHHHHHHccC---------
Q psy246 515 IAV-AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTA---PSNAALAAAQILAQR--------- 581 (615)
Q Consensus 515 Ia~-AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~---~~nAa~~A~~Il~~~--------- 581 (615)
|.+ .+....+--+.......|++-|-....+ ++.++++..++ ++-|+.+|+.++...
T Consensus 67 i~~~~~~~~~~~~~a~~~p~~p~v~id~~~~~----------~~~~~~v~~d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~ 136 (318)
T 2fqx_A 67 VACGSFLVEAVIETSARFPKQKFLVIDAVVQD----------RDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIV 136 (318)
T ss_dssp EEESTTTHHHHHHHHHHCTTSCEEEESSCCCS----------CTTEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EECChhHHHHHHHHHHHCCCCEEEEEcCccCC----------CCCEEEEEechHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 554 3333333333222346777766321100 23455666653 344443345544332
Q ss_pred ---CHHHHHHHHHHHHHHHH
Q psy246 582 ---DFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 582 ---d~~l~~kl~~~~~~~~~ 598 (615)
.+....|+..|+..+..
T Consensus 137 g~~~~~~~~r~~Gf~~~~~~ 156 (318)
T 2fqx_A 137 GMELGMMPLFEAGFEAGVKA 156 (318)
T ss_dssp SCCSTTTHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 24567788888776543
No 88
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=62.84 E-value=98 Score=28.96 Aligned_cols=128 Identities=11% Similarity=0.070 Sum_probs=69.2
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|++++.+.++ ..+.+.+...+++.|+... +...+. .++...+++ +.+..++++ .+|...
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-gii~~~ 67 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLL-LGYSDY---SIEQEEKLL-----------STFLESRPA-GVVLFG 67 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEEC-CEECTT---CHHHHHHHH-----------HHHHTSCCC-CEEEES
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEE-EEcCCC---CHHHHHHHH-----------HHHHhcCCC-EEEEeC
Confidence 478999877665 3455667778888887664 334444 555555554 444456777 444333
Q ss_pred CCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCHH
Q psy246 519 GKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDFF 584 (615)
Q Consensus 519 G~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~~ 584 (615)
.... ...+. .....||+.+-.... .++++++..|+-..+..++-.++.. ..+.
T Consensus 68 ~~~~--~~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~ 134 (275)
T 3d8u_A 68 SEHS--QRTHQLLEASNTPVLEIAELSS-----------KASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHST 134 (275)
T ss_dssp SCCC--HHHHHHHHHHTCCEEEESSSCS-----------SSSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHH
T ss_pred CCCC--HHHHHHHHhCCCCEEEEeeccC-----------CCCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCch
Confidence 2221 12222 124688887633211 1346666666554444444334332 1234
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
...|++.|+..+.+
T Consensus 135 ~~~R~~gf~~~l~~ 148 (275)
T 3d8u_A 135 LQRQLHGWQSAMIE 148 (275)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777766543
No 89
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=62.03 E-value=23 Score=33.71 Aligned_cols=84 Identities=8% Similarity=-0.048 Sum_probs=49.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc------CCcchHHHHHHHHhhHHHHHHHHhhhhcC--CCCEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL------DNVARDEVQIMKRLSLVVFEILVMKSWSS--GKNVV 513 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR------~~~~p~~~~~~~~~~~~~~~~l~~~~~~~--~~~~V 513 (615)
.+|+|++- .-....+...+.++..|+.+..+.+.-. -.++++.+.+++ +.+... |++.|
T Consensus 109 ~rvgvlt~--~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~gadaI 175 (223)
T 2dgd_A 109 RKLWIGTP--YIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLV-----------KRHLNEVLKADAV 175 (223)
T ss_dssp CEEEEEES--SCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHH-----------HTTHHHHTTSSEE
T ss_pred CeEEEEeC--CchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHH-----------HHHhcccCCCCEE
Confidence 48999963 3344455666788888988754333322 012344444443 334445 78888
Q ss_pred EEEecCCCCC-chhhhcccCCCCeec
Q psy246 514 FIAVAGKSNG-LGPVISGNTCYPVIN 538 (615)
Q Consensus 514 ~Ia~AG~~~~-L~gvva~~t~~PVI~ 538 (615)
|++++++... +..-+...+.+|||.
T Consensus 176 vLgCT~l~~~~~~~~l~~~~g~PVid 201 (223)
T 2dgd_A 176 YIACTALSTYEAVQYLHEDLDMPVVS 201 (223)
T ss_dssp EECCTTSCCTTHHHHHHHHHTSCEEE
T ss_pred EEeCCcccHHHHHHHHHHHhCCCEEE
Confidence 9999888653 344444445677763
No 90
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=61.71 E-value=6.5 Score=40.56 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHH
Q psy246 280 VARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKV 357 (615)
Q Consensus 280 ~~~~e~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (615)
++++..+++++++.++.+.|. -.|+.-+|+++ +++|++.+.+..|+++ .+....+|..++|+ .++
T Consensus 233 l~~~~~~~~~~~a~~~~~~lg----~~G~~~ve~~~----~~dg~~~viEiNpR~~~s~~~~~~~~g~~~~~-----~~~ 299 (389)
T 3q2o_A 233 ITEELSQKAIAYAKVLADELE----LVGTLAVEMFA----TADGEIYINELAPRPHNSGHYTQDACETSQFG-----QHI 299 (389)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT----CCEEEEEEEEE----CTTSCEEEEEEESSCCGGGTTHHHHBSSCHHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHcC----CeeEEEEEEEE----eCCCCEEEEEeeCCCCCchhHHHHHcCCCHHH-----HHH
Confidence 577788888888888776652 24666666654 6688999999999998 57778889888887 567
Q ss_pred Hhhhhhhhhcce
Q psy246 358 WASLNCVLVDMK 369 (615)
Q Consensus 358 ~~~~~~~lvd~~ 369 (615)
++.+|.+|-++.
T Consensus 300 r~~lg~~l~~~~ 311 (389)
T 3q2o_A 300 RAICNLPLGETN 311 (389)
T ss_dssp HHHHTCCCCCCC
T ss_pred HHHcCCCCCCcc
Confidence 777788887743
No 91
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=60.94 E-value=78 Score=30.49 Aligned_cols=132 Identities=9% Similarity=0.012 Sum_probs=70.7
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|++++.+.++- .+.+.+...+++.|+.. .+..... .+++..+++ +.+..++++ .||...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l-~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~~ 66 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITL-KIADGQQ---KQENQIKAV-----------RSFVAQGVD-AIFIAP 66 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEE-EEEECTT---CHHHHHHHH-----------HHHHHHTCS-EEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEE-EEeCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeC
Confidence 4789998876652 34566778888899766 3445555 565555554 333345677 555444
Q ss_pred CCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC---------------
Q psy246 519 GKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR--------------- 581 (615)
Q Consensus 519 G~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~--------------- 581 (615)
.....+...+.- ....||+.+-....+.+ .+..++++.+|+-..+..++-.++...
T Consensus 67 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~-------~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~ 139 (306)
T 2vk2_A 67 VVATGWEPVLKEAKDAEIPVFLLDRSIDVKD-------KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG 139 (306)
T ss_dssp SSSSSCHHHHHHHHHTTCCEEEESSCCCCSC-------GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTT
T ss_pred CChhhHHHHHHHHHHCCCCEEEecCCCCCCC-------ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCC
Confidence 333333344432 34689887643221100 012466777765544444333333321
Q ss_pred CHHHHHHHHHHHHHH
Q psy246 582 DFFIWSKLRMYQTKL 596 (615)
Q Consensus 582 d~~l~~kl~~~~~~~ 596 (615)
......|++.|+..+
T Consensus 140 ~~~~~~R~~Gf~~al 154 (306)
T 2vk2_A 140 ASVAIDRKKGFAEAI 154 (306)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHH
Confidence 234556777777654
No 92
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=60.68 E-value=6 Score=40.96 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeeeEeeecCCCCCcccCCCCccch--hhhhhccccchhhHHHHHHHHHHhhhh
Q psy246 285 VQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKL--YAIEVSDCSSMCYKLLEILEKVWASLN 362 (615)
Q Consensus 285 ~~~~~~~~~~v~~~l~~~~~~~g~~lvD~K~Efg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (615)
.+++++++.++.+.|. -.|+.-+|+++ +++|++.+++..|+++ ++.+..+|..++|+ .++++.+|
T Consensus 234 ~~~~~~~a~~i~~~lg----~~G~~~ve~~~----~~~g~~~v~EinpR~~~sg~~t~~~~~~s~f~-----~~~ra~~G 300 (377)
T 3orq_A 234 TAEAKEQVNKIIQSIH----FIGTFTVEFFI----DSNNQLYVNEIAPRPHNSGHYSIEACDYSQFD-----THILAVTG 300 (377)
T ss_dssp HHHHHHHHHHHHTTSC----CCEEEEEEEEE----ETTCCEEEEEEESSCCGGGTTHHHHBSSCHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHCC----CeEEEEEEEEE----eCCCcEEEEEeeCCcCCCCcEeehhcCCCHHH-----HHHHHHcC
Confidence 4556666666655441 24555666554 5678999999999999 68889999999997 57788889
Q ss_pred hhhhc-cee
Q psy246 363 CVLVD-MKI 370 (615)
Q Consensus 363 ~~lvd-~~~ 370 (615)
++|.| +..
T Consensus 301 ~pl~~~~~~ 309 (377)
T 3orq_A 301 QSLPNSIEL 309 (377)
T ss_dssp CCCCSCCCB
T ss_pred CCCCccccc
Confidence 99888 553
No 93
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=60.43 E-value=13 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy246 585 IWSKLRMYQTKLYIALNKEDKKSRQEN 611 (615)
Q Consensus 585 l~~kl~~~~~~~~~~~~~~d~~l~~~~ 611 (615)
++.|||.+|.+..+++.+..++++...
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999998887643
No 94
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=59.77 E-value=71 Score=30.35 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=67.4
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+ ++- .+.+.+...+++.|+... +..... .++...+++ +.+..++++ .+|..
T Consensus 8 ~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~~ 70 (288)
T 2qu7_A 8 SNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVA-VASSEE---NEDKQQDLI-----------ETFVSQNVS-AIILV 70 (288)
T ss_dssp EEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEE-EEECTT---CHHHHHHHH-----------HHHHHTTEE-EEEEC
T ss_pred CCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHHHHHHHH-----------HHHHHcCcc-EEEEe
Confidence 3579999987 542 455667778888887654 444444 555554444 333345676 44444
Q ss_pred cCCCC--CchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCH
Q psy246 518 AGKSN--GLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDF 583 (615)
Q Consensus 518 AG~~~--~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~ 583 (615)
..... .+.-+ ...||+.+-.... .++++++..|+-..+..++-.++.. ..+
T Consensus 71 ~~~~~~~~~~~l----~~iPvV~~~~~~~-----------~~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~ 135 (288)
T 2qu7_A 71 PVKSKFQMKREW----LKIPIMTLDRELE-----------STSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNIS 135 (288)
T ss_dssp CSSSCCCCCGGG----GGSCEEEESCCCS-----------SCCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSH
T ss_pred cCCCChHHHHHh----cCCCEEEEecccC-----------CCCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 33222 22221 5578877643221 1245666666554444444333332 123
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 ~l~~kl~~~~~~~~~ 598 (615)
....|++.|+..+.+
T Consensus 136 ~~~~R~~gf~~~l~~ 150 (288)
T 2qu7_A 136 TTIGRKNGYNKAISE 150 (288)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 456677777765543
No 95
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=59.70 E-value=67 Score=31.44 Aligned_cols=138 Identities=8% Similarity=-0.025 Sum_probs=72.7
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC--CCEEEE
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG--KNVVFI 515 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~--~~~V~I 515 (615)
..+|++++.+.++- .+.+.+...+++.|+... +...+. .++...+++ +.+..++ ++ .||
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~-~~~~~~---~~~~~~~~i-----------~~l~~~~~~vd-giI 68 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYV-PLTTEG---SSEKGIADI-----------RALLQKTGGNL-VLN 68 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEE-EEECTT---CHHHHHHHH-----------HHHHHHTTTCE-EEE
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEE-EecCCC---CHHHHHHHH-----------HHHHHCCCCCC-EEE
Confidence 45799999876663 455677788888998764 445555 555554444 3333345 76 555
Q ss_pred EecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCC-CCceeeeecChhhHHHHHHHHHc--c----------
Q psy246 516 AVAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLP-AGIACSTVTAPSNAALAAAQILA--Q---------- 580 (615)
Q Consensus 516 a~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp-~Gv~v~tv~~~~nAa~~A~~Il~--~---------- 580 (615)
........+...+.- ....||+.+-....+.. .+ ..+ +.++++..|+-..+-.++-.++. .
T Consensus 69 i~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~-~~---~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g 144 (332)
T 2rjo_A 69 VDPNDSADARVIVEACSKAGAYVTTIWNKPKDLH-PW---DYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGG 144 (332)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCC-GG---GGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred EeCCCHHHHHHHHHHHHHCCCeEEEECCCCCccc-ch---hcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEEC
Confidence 544333223233322 24689887754322100 00 012 35666666654443333333333 1
Q ss_pred --CCHHHHHHHHHHHHHHHH
Q psy246 581 --RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 --~d~~l~~kl~~~~~~~~~ 598 (615)
.......|++.|+..+..
T Consensus 145 ~~~~~~~~~R~~Gf~~al~~ 164 (332)
T 2rjo_A 145 IFSNVPAIERKAGLDAALKK 164 (332)
T ss_dssp CTTCHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHh
Confidence 223456777777766543
No 96
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=58.13 E-value=1.2e+02 Score=29.11 Aligned_cols=131 Identities=9% Similarity=0.015 Sum_probs=71.8
Q ss_pred CCeEEEEeCC-----CCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCE
Q psy246 441 DNLVVLALGS-----SSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNV 512 (615)
Q Consensus 441 ~~~V~Ii~gs-----~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 512 (615)
...|++++.+ .++ ..+.+.+.+.+++.|+.. -+...+. .++.-.+++ +.+..++++-
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdG 71 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGT-QTTVSNN---MNDLMDEVY-----------KMIKQRMVDA 71 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEE-EECCCCS---HHHHHHHHH-----------HHHHTTCCSE
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEE-EEEcCCC---ChHHHHHHH-----------HHHHhCCcCE
Confidence 4589999843 233 456778888889999766 4445554 555555554 4455567884
Q ss_pred EEEEecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc----------
Q psy246 513 VFIAVAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ---------- 580 (615)
Q Consensus 513 V~Ia~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~---------- 580 (615)
||++...... ..+. .....||+.+-....+.. ..++.+..|+-.++..++-.++..
T Consensus 72 iI~~~~~~~~---~~~~~l~~~~iPvV~i~~~~~~~~---------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 139 (295)
T 3hcw_A 72 FILLYSKEND---PIKQMLIDESMPFIVIGKPTSDID---------HQFTHIDNDNILASENLTRHVIEQGVDELIFITE 139 (295)
T ss_dssp EEESCCCTTC---HHHHHHHHTTCCEEEESCCCSSGG---------GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEcCcccCh---HHHHHHHhCCCCEEEECCCCcccc---------CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcC
Confidence 4443222221 2222 234688887643322110 034566666544444444444432
Q ss_pred --CCHHHHHHHHHHHHHHHH
Q psy246 581 --RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 --~d~~l~~kl~~~~~~~~~ 598 (615)
.......|++.|+..+.+
T Consensus 140 ~~~~~~~~~R~~Gf~~al~~ 159 (295)
T 3hcw_A 140 KGNFEVSKDRIQGFETVASQ 159 (295)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHH
Confidence 234567788888876644
No 97
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=56.78 E-value=77 Score=29.96 Aligned_cols=131 Identities=6% Similarity=-0.103 Sum_probs=70.6
Q ss_pred CCeEEEEeCCCC--CH---HHHHHHHHHhhccCCCeeEEEec--ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEE
Q psy246 441 DNLVVLALGSSS--DL---PFANKIDDANHDPQWSDEQILSA--NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVV 513 (615)
Q Consensus 441 ~~~V~Ii~gs~S--D~---~~~~~~~~~l~~~gi~~~~V~sa--HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V 513 (615)
..+|++++.+.+ +- .+.+.+...+++.|+... +... +. .+++..+++ +.+..++++ .
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-g 68 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLE-FMAPEKEE---DYLVQNELI-----------EEAIKRKPD-V 68 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEE-ECCCSSTT---CHHHHHHHH-----------HHHHHTCCS-E
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEE-EecCCCCC---CHHHHHHHH-----------HHHHHhCCC-E
Confidence 457999987765 42 345566777888887653 3333 44 555554444 333445787 5
Q ss_pred EEEecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc-C---------
Q psy246 514 FIAVAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ-R--------- 581 (615)
Q Consensus 514 ~Ia~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-~--------- 581 (615)
+|........+...+.- ....||+.+-....+ ++.++++..|+-..+..++-.++.. .
T Consensus 69 ii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----------~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~ 138 (289)
T 3brs_A 69 ILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ----------DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVIS 138 (289)
T ss_dssp EEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS----------CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEE
T ss_pred EEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC----------CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 55555444444333332 346888876432211 2236677766544444444333332 2
Q ss_pred ----CHHHHHHHHHHHHHHH
Q psy246 582 ----DFFIWSKLRMYQTKLY 597 (615)
Q Consensus 582 ----d~~l~~kl~~~~~~~~ 597 (615)
.+....|++.|+..+.
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~ 158 (289)
T 3brs_A 139 FVKNSKTAMDREEGLKIGLS 158 (289)
T ss_dssp SCTTSHHHHHHHHHHHHHHG
T ss_pred CCCCCccHHHHHHHHHHHHH
Confidence 1344566777666543
No 98
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=55.87 E-value=61 Score=30.85 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=49.1
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++- .+.+.+.+.+++.|+... +...+. .-.++...+.+ +.+..++++ .||..
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~-~~~~~~-~~~~~~~~~~~-----------~~~~~~~vd-giii~ 70 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLR-VLEAGG-YPNKSRQEQQL-----------ALCTQWGAN-AIILG 70 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEE-EEECSS-TTCHHHHHHHH-----------HHHHHHTCS-EEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEE-EEcCCC-CCCHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 35799999887773 445677778888998764 333332 00233333333 333345677 55555
Q ss_pred cCCCCCchhhhccc-CCCCeecc
Q psy246 518 AGKSNGLGPVISGN-TCYPVINC 539 (615)
Q Consensus 518 AG~~~~L~gvva~~-t~~PVI~v 539 (615)
.....++...+... ...|||.+
T Consensus 71 ~~~~~~~~~~~~~~~~~iPvV~~ 93 (304)
T 3o1i_D 71 TVDPHAYEHNLKSWVGNTPVFAT 93 (304)
T ss_dssp CSSTTSSTTTHHHHTTTSCEEEC
T ss_pred CCChhHHHHHHHHHcCCCCEEEe
Confidence 55545444444322 57888876
No 99
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=54.98 E-value=1.4e+02 Score=28.65 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=53.8
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCC---Cee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQW---SDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi---~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
.+|+|+. +.++ -.+.+.+.+.|++.|. ... .++..++ .+++..+++ +.+..++++ .|
T Consensus 3 ~~Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~---~~~~~~~~~-----------~~l~~~~vD-gI 66 (295)
T 3lft_A 3 AKIGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEG---DQSKVATMS-----------KQLVANGND-LV 66 (295)
T ss_dssp EEEEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTT---CHHHHHHHH-----------HHHTTSSCS-EE
T ss_pred eEEEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCC---CHHHHHHHH-----------HHHHhcCCC-EE
Confidence 4688883 3333 3456778888999998 655 5678888 888887777 666667888 66
Q ss_pred EEecCCCCCchhhhcccCCCCeeccCC
Q psy246 515 IAVAGKSNGLGPVISGNTCYPVINCPP 541 (615)
Q Consensus 515 Ia~AG~~~~L~gvva~~t~~PVI~vP~ 541 (615)
|+... . +...+.......||+.|-.
T Consensus 67 I~~~~-~-~~~~~~~~~~~iPvV~~~~ 91 (295)
T 3lft_A 67 VGIAT-P-AAQGLASATKDLPVIMAAI 91 (295)
T ss_dssp EEESH-H-HHHHHHHHCSSSCEEEESC
T ss_pred EECCc-H-HHHHHHHcCCCCCEEEEec
Confidence 66532 1 2222332346789998754
No 100
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=54.60 E-value=53 Score=31.47 Aligned_cols=127 Identities=7% Similarity=0.013 Sum_probs=67.6
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++ +.++- .+.+.+.+.+++.|+... +...+. .++ -.+.+ +.+..++++ -+|..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~-~~~~~-----------~~l~~~~vd-giIi~ 73 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVM-LSAVAP---SRA-EKVAV-----------QALMRERCE-AAILL 73 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEE-EEEEBT---TBC-HHHHH-----------HHHTTTTEE-EEEEE
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEE-EEeCCC---CHH-HHHHH-----------HHHHhCCCC-EEEEE
Confidence 45899999 65552 345677788889997664 444444 333 22333 333445676 44444
Q ss_pred cCCCCCchhhhcc-cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC-----------CHHH
Q psy246 518 AGKSNGLGPVISG-NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR-----------DFFI 585 (615)
Q Consensus 518 AG~~~~L~gvva~-~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~-----------d~~l 585 (615)
...... ..+.. ....|||.+-.... .++++++.+|+-.++..++-.++... +...
T Consensus 74 ~~~~~~--~~~~~~~~~iPvV~i~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~ 140 (289)
T 3k9c_A 74 GTRFDT--DELGALADRVPALVVARASG-----------LPGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGG 140 (289)
T ss_dssp TCCCCH--HHHHHHHTTSCEEEESSCCS-----------STTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTH
T ss_pred CCCCCH--HHHHHHHcCCCEEEEcCCCC-----------CCCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccH
Confidence 333222 22221 12788887643221 24567777776554444444443321 1245
Q ss_pred HHHHHHHHHHHHH
Q psy246 586 WSKLRMYQTKLYI 598 (615)
Q Consensus 586 ~~kl~~~~~~~~~ 598 (615)
..|++.|+..+.+
T Consensus 141 ~~R~~Gf~~al~~ 153 (289)
T 3k9c_A 141 ADRRAGFLAAMDR 153 (289)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776544
No 101
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=54.47 E-value=45 Score=32.69 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=52.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEeccc------CCcchHHHHHHHHhhHHHHHHHHhh-h-hcCCCCEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANL------DNVARDEVQIMKRLSLVVFEILVMK-S-WSSGKNVV 513 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR------~~~~p~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~V 513 (615)
.+|+|++- ......+...+.|++.|+++-.+.+..+ -+++++.+.+++ +. . ...|++.|
T Consensus 118 ~rvglltp--y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~adai 184 (240)
T 3ixl_A 118 RRVALATA--YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLC-----------VRAFEAAPDSDGI 184 (240)
T ss_dssp SEEEEEES--SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHH-----------HHHHHTSTTCSEE
T ss_pred CEEEEEeC--ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHH-----------HHHhhcCCCCCEE
Confidence 48999963 5555667778889889998765444433 124556555555 44 4 56688889
Q ss_pred EEEecCCCCCc-hhhhcccCCCCeec
Q psy246 514 FIAVAGKSNGL-GPVISGNTCYPVIN 538 (615)
Q Consensus 514 ~Ia~AG~~~~L-~gvva~~t~~PVI~ 538 (615)
|+++.++.... -.-+-..+.+|||.
T Consensus 185 vL~CT~l~~l~~i~~le~~lg~PVid 210 (240)
T 3ixl_A 185 LLSSGGLLTLDAIPEVERRLGVPVVS 210 (240)
T ss_dssp EEECTTSCCTTHHHHHHHHHSSCEEE
T ss_pred EEeCCCCchhhhHHHHHHHhCCCEEe
Confidence 99987774332 12234455677754
No 102
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=54.44 E-value=1.5e+02 Score=28.21 Aligned_cols=129 Identities=7% Similarity=-0.102 Sum_probs=68.5
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHH---HHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQI---MKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~---~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
..+|++++.+.++ ..+.+.+...+++.|+.. .+..... .++...+ ++ +.+..++++ .+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~~~~-----------~~l~~~~vd-gi 71 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHV-VVATGCG---ESTPREQALEAV-----------RFLIGRDCD-GV 71 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEE-EEECCCS---SSCHHHHHHHHH-----------HHHHHTTCS-EE
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEE-EEEeCCC---chhhhhhHHHHH-----------HHHHhcCcc-EE
Confidence 4589999876665 345567777888888765 3444444 4444333 33 333445787 45
Q ss_pred EEecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------
Q psy246 515 IAVAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------ 580 (615)
Q Consensus 515 Ia~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------ 580 (615)
|....... ...+.. ....||+.+-....+ ++++++..|+-..+..++-.++..
T Consensus 72 Ii~~~~~~--~~~~~~l~~~~iPvV~~~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 138 (290)
T 2rgy_A 72 VVISHDLH--DEDLDELHRMHPKMVFLNRAFDA-----------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPF 138 (290)
T ss_dssp EECCSSSC--HHHHHHHHHHCSSEEEESSCCTT-----------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred EEecCCCC--HHHHHHHhhcCCCEEEEccccCC-----------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 54433322 223321 246888876432211 234556666544444333333322
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy246 581 RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 ~d~~l~~kl~~~~~~~~~ 598 (615)
.......|++.|+..+.+
T Consensus 139 ~~~~~~~R~~Gf~~al~~ 156 (290)
T 2rgy_A 139 TASDNVERLDGFFDELAR 156 (290)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 123456777777766543
No 103
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=54.14 E-value=89 Score=29.47 Aligned_cols=82 Identities=5% Similarity=-0.066 Sum_probs=46.9
Q ss_pred CCeEEEEeCC--CCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 441 DNLVVLALGS--SSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 441 ~~~V~Ii~gs--~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
..+|++++.. .++ ..+.+.+...+++.|+.. .+...+. .++...+.+ +.+..++++ .+|
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-gii 82 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQL-LLADGKH---SAEEERQAI-----------QYLLDLRCD-AIM 82 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEE-EEECCTT---SHHHHHHHH-----------HHHHHTTCS-EEE
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHhcCCC-EEE
Confidence 4589999876 343 346677778888899865 4455555 566555444 333345787 455
Q ss_pred EecCCCCCchhhhc--cc-CCCCeeccC
Q psy246 516 AVAGKSNGLGPVIS--GN-TCYPVINCP 540 (615)
Q Consensus 516 a~AG~~~~L~gvva--~~-t~~PVI~vP 540 (615)
....... ...+. .. ...||+.+-
T Consensus 83 ~~~~~~~--~~~~~~l~~~~~iPvV~~~ 108 (296)
T 3brq_A 83 IYPRFLS--VDEIDDIIDAHSQPIMVLN 108 (296)
T ss_dssp EECSSSC--HHHHHHHHHTCSSCEEEES
T ss_pred EecCCCC--hHHHHHHHhcCCCCEEEEc
Confidence 4433222 12222 12 568888764
No 104
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=53.94 E-value=1.5e+02 Score=28.12 Aligned_cols=84 Identities=10% Similarity=0.007 Sum_probs=50.1
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCC-CeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQW-SDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi-~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|++++.+.++- .+.+.+...+++.|+ .. .+...+. .++...+++ +.+..++++ .||..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~~---~~~~~~~~~-----------~~~~~~~vd-giii~ 66 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL-LMNDSQN---DQSKQNDQI-----------DVLLAKGVK-ALAIN 66 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEE-EEecCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 4788998776652 456677778888996 44 4555555 566555554 444456787 55554
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCC
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPP 541 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~ 541 (615)
..........+.- ....|||.+-.
T Consensus 67 ~~~~~~~~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 67 LVDPAAAGTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp CSSGGGHHHHHHHHHTTTCCEEEESS
T ss_pred CCCcchhHHHHHHHHHCCCcEEEecC
Confidence 4333333333332 35689887754
No 105
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=53.21 E-value=52 Score=31.40 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|+++..+.++ ..+.+.+...+++.|+...-+...+. .+++..+.+ +.+..++++ .+|..
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giii~ 68 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSST---DAPQQVKII-----------EDLIARKVD-AITIV 68 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSS---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 3478888876555 23456677778888865532333455 666655554 444446787 55555
Q ss_pred cCCCCCchhhhc--ccCCCCeeccC
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINCP 540 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~vP 540 (615)
...+..+...+. .....||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 69 PNDANVLEPVFKKARDAGIVVLTNE 93 (303)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred cCChHHHHHHHHHHHHCCCeEEEEe
Confidence 443333322222 23468888764
No 106
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=53.21 E-value=69 Score=29.91 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=50.4
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEe--cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCC-CCEEEEE
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILS--ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSG-KNVVFIA 516 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~s--aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~-~~~V~Ia 516 (615)
+|+++..+.++ ..+.+.+...+++.|+... +.. .+. .+++..+.+ +.+-.++ ++ .||.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~---~~~~~~~~i-----------~~l~~~~~vd-gii~ 65 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLL-HRSTKDDG---DIAGQIQIL-----------SYHLSQAPPD-ALIL 65 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEE-ECCCSSTT---CHHHHHHHH-----------HHHHHHSCCS-EEEE
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEE-EECCCCCC---CHHHHHHHH-----------HHHHHhCCCC-EEEE
Confidence 68888877666 4456778888888998764 333 344 566555554 4444456 87 5555
Q ss_pred ecCCCCCchhhhcc--cCCCCeeccCC
Q psy246 517 VAGKSNGLGPVISG--NTCYPVINCPP 541 (615)
Q Consensus 517 ~AG~~~~L~gvva~--~t~~PVI~vP~ 541 (615)
...........+.. ....||+.+-.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 66 APNSAEDLTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp CCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred eCCCHHHHHHHHHHHHHCCCcEEEEec
Confidence 54333444444433 34789888753
No 107
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=52.96 E-value=1e+02 Score=29.39 Aligned_cols=129 Identities=9% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++ ..+.+.+...+++.|+.. .+..... .++...+++ +.+..++++ .+|..
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi~ 79 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNI-ILSNSDQ---NMEKELHLL-----------NTMLGKQVD-GIVFM 79 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEE-EEEeCCC---CHHHHHHHH-----------HHHHhCCCC-EEEEe
Confidence 4589999977665 245567777888899765 3445554 555555554 444446787 44444
Q ss_pred cCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc-------------CC
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ-------------RD 582 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-------------~d 582 (615)
..... ...+. .....||+.+-.... .++++++..|+-..+..++-.++.. ..
T Consensus 80 ~~~~~--~~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~ 146 (289)
T 2fep_A 80 GGNIT--DEHVAEFKRSPVPIVLAASVEE-----------QEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEP 146 (289)
T ss_dssp CSCCC--HHHHHHHHHSSSCEEEESCCCT-----------TCCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSH
T ss_pred cCCCC--HHHHHHHHhcCCCEEEEccccC-----------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCcccc
Confidence 32211 22222 135688887643221 1345666666544443333333322 11
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
.....|++.|+..+.+
T Consensus 147 ~~~~~R~~Gf~~al~~ 162 (289)
T 2fep_A 147 INRSKKLQGYKRALEE 162 (289)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 2345677777765543
No 108
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=52.62 E-value=1.1e+02 Score=29.03 Aligned_cols=138 Identities=10% Similarity=-0.027 Sum_probs=70.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhc---cCCCeeEEEecccC--------CcchHHHHHHHHhhHHHHHHHHhhhhcCCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHD---PQWSDEQILSANLD--------NVARDEVQIMKRLSLVVFEILVMKSWSSGKN 511 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~---~gi~~~~V~saHR~--------~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (615)
+|+||.||.+.-.+-.+.+..+.+ -|+++ .+....-+ .-.|+.+.++. +.... ++
T Consensus 4 ~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~-~~idl~dLP~~~~d~~~~~p~~~~~l~-----------~~i~~--aD 69 (190)
T 3u7r_A 4 TVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEF-HLLHIGDLPHYNDDLWADAPESVLRLK-----------DRIEH--SD 69 (190)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHTTTEEE-EECCGGGSCCCCGGGGGGCCHHHHHHH-----------HHHHT--SS
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhccCCCEE-EEEecccCCCCCCCcccCCCHHHHHHH-----------HHHHh--CC
Confidence 699999998875544444444322 23333 33333211 01456666555 44432 55
Q ss_pred EEEEEecCCCCCchhhh-------------cccCCCCeeccCCCCC---ch------hhhhhhhcC---C-CCceeeeec
Q psy246 512 VVFIAVAGKSNGLGPVI-------------SGNTCYPVINCPPLDS---TG------RDVWSSLNL---P-AGIACSTVT 565 (615)
Q Consensus 512 ~V~Ia~AG~~~~L~gvv-------------a~~t~~PVI~vP~~~~---g~------~~l~S~lqm---p-~Gv~v~tv~ 565 (615)
.+||+.---.+..||++ .....+||.-+-++.| |. ..+++.+.| | |.+.+....
T Consensus 70 ~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~~v~~~p~~~i~~~~ 149 (190)
T 3u7r_A 70 AVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGTVMMSMPEAYIQWHA 149 (190)
T ss_dssp EEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTCEECCCSCCEEECCG
T ss_pred cEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCCEEccCCEEEEeccH
Confidence 57777665566666654 2356788877655443 33 333444444 2 112222222
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Q psy246 566 APSNAALAAAQILAQRDFFIWSKLRMYQTKLYIAL 600 (615)
Q Consensus 566 ~~~nAa~~A~~Il~~~d~~l~~kl~~~~~~~~~~~ 600 (615)
..++.- =.+.|+.+.++|+..-.+...-+
T Consensus 150 ~~fd~~------G~l~de~~~~~l~~~~~~~~~~i 178 (190)
T 3u7r_A 150 EAYAAD------GSVTDEKTAKFLQGFVDAFVDWI 178 (190)
T ss_dssp GGBCTT------SCBCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCC------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 222210 12467888888877666554433
No 109
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=52.20 E-value=1.6e+02 Score=27.83 Aligned_cols=83 Identities=8% Similarity=0.116 Sum_probs=48.4
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|+++..+.++ ..+.+.+...+++.|+.. .+....- .+++..+++ +.+..++++ .+|...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~~~ 66 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEA-TIFDSQN---DTAKESAHF-----------DAIIAAGYD-AIIFNP 66 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEECC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEE-EEeCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEec
Confidence 478899877655 245566777888899765 3444444 565554444 333345787 555544
Q ss_pred CCCCCchhhhc--ccCCCCeeccC
Q psy246 519 GKSNGLGPVIS--GNTCYPVINCP 540 (615)
Q Consensus 519 G~~~~L~gvva--~~t~~PVI~vP 540 (615)
.....+...+. .....||+.+-
T Consensus 67 ~~~~~~~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 67 TDADGSIANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp SCTTTTHHHHHHHHHTTCCEEEES
T ss_pred CChHHHHHHHHHHHHCCCeEEEEe
Confidence 44343333332 23567888764
No 110
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=51.85 E-value=1.5e+02 Score=29.27 Aligned_cols=129 Identities=11% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++- .+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++-+|+..
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdGiI~~~ 134 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQL-LLGYTAY---SPEREEQLV-----------ETMLRRRPEAMVLSY 134 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTCCSEEEEEC
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHhCCCCEEEEeC
Confidence 45899999887764 45567778888898766 4556666 666666555 444456788455543
Q ss_pred cCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------CH
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------DF 583 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d~ 583 (615)
...+ ...+. .....||+.+-.... .+..+++.+|+-.++..++-.++... ..
T Consensus 135 ~~~~---~~~~~~l~~~~iPvV~i~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~ 200 (355)
T 3e3m_A 135 DGHT---EQTIRLLQRASIPIVEIWEKPA-----------HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDW 200 (355)
T ss_dssp SCCC---HHHHHHHHHCCSCEEEESSCCS-----------SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTT
T ss_pred CCCC---HHHHHHHHhCCCCEEEECCccC-----------CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccC
Confidence 3222 12222 235688887621111 23345666665444444333333332 11
Q ss_pred -HHHHHHHHHHHHHHH
Q psy246 584 -FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 -~l~~kl~~~~~~~~~ 598 (615)
....|++.|+..+.+
T Consensus 201 ~~~~~R~~Gf~~al~~ 216 (355)
T 3e3m_A 201 TRGAARRAGFKRAMRE 216 (355)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 256778888776544
No 111
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=51.78 E-value=1.3e+02 Score=29.54 Aligned_cols=132 Identities=8% Similarity=-0.020 Sum_probs=69.8
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++...++- .+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++-+|+..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI~~~ 122 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTL-ILGNAWN---NLEKQRAYL-----------SMMAQKRVDGLLVMC 122 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCSEEEECC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEE-EEEeCCC---CHHHHHHHH-----------HHHHcCCCCEEEEeC
Confidence 45899999776653 35567777888888765 4455555 666655554 444446787344432
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCC-ceeeeecChhhHHHHHHHHHcc------------CCHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAG-IACSTVTAPSNAALAAAQILAQ------------RDFF 584 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~G-v~v~tv~~~~nAa~~A~~Il~~------------~d~~ 584 (615)
......+-..+......||+.+-.... ..+ .+++..|+-..+..++-.++.. ....
T Consensus 123 ~~~~~~~~~~l~~~~~iPvV~~~~~~~-----------~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~ 191 (340)
T 1qpz_A 123 SEYPEPLLAMLEEYRHIPMVVMDWGEA-----------KADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNT 191 (340)
T ss_dssp SCCCHHHHHHHHTTTTSCEEEEEESSC-----------CCSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHH
T ss_pred CCCChHHHHHHHhhCCCCEEEEecccC-----------CCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCcccc
Confidence 222222333333224678876532111 112 3456666544443333333321 1234
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
...|+..|+..+.+
T Consensus 192 ~~~R~~Gf~~al~~ 205 (340)
T 1qpz_A 192 GAGRLAGFMKAMEE 205 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56778888776644
No 112
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=51.67 E-value=31 Score=30.81 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHHHHhhccCCC-ee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh------
Q psy246 456 FANKIDDANHDPQWS-DE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV------ 527 (615)
Q Consensus 456 ~~~~~~~~l~~~gi~-~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv------ 527 (615)
..+++...++..|++ ++ .+..- . ..+.+. +.+++.+++.|+++--|+++ +..+
T Consensus 82 ~l~~~~~~~~~~gv~~v~~~v~~G-~---~~~~I~--------------~~a~~~~~DLIV~G~~g~~~-~~~~~lGSva 142 (163)
T 1tq8_A 82 ILHDAKERAHNAGAKNVEERPIVG-A---PVDALV--------------NLADEEKADLLVVGNVGLST-IAGRLLGSVP 142 (163)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECS-S---HHHHHH--------------HHHHHTTCSEEEEECCCCCS-HHHHHTBBHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEecC-C---HHHHHH--------------HHHHhcCCCEEEECCCCCCc-ccceeeccHH
Confidence 455566667777888 76 44321 1 222333 44456678866666666643 4332
Q ss_pred --hcccCCCCeeccCCCCC
Q psy246 528 --ISGNTCYPVINCPPLDS 544 (615)
Q Consensus 528 --va~~t~~PVI~vP~~~~ 544 (615)
|.-++.+||+-||...+
T Consensus 143 ~~vl~~a~~PVlvV~~~~~ 161 (163)
T 1tq8_A 143 ANVSRRAKVDVLIVHTTEG 161 (163)
T ss_dssp HHHHHHTTCEEEEECCC--
T ss_pred HHHHHhCCCCEEEEeCCCC
Confidence 33457899999997653
No 113
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=51.60 E-value=37 Score=33.39 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=33.9
Q ss_pred CeEEEEeC-CCCCH----HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALG-SSSDL----PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~g-s~SD~----~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
.+|++++- +.+|- .+.+.+..+++++|+.. .++..+. .+++..+.+ +.+..++++ .||.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~l-----------~~l~~~~vd-gIi~ 69 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDV-VLEEGVN---SEQKAHRRI-----------KELVDGGVN-LIFG 69 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEE-EEECCCC---SHHHHHHHH-----------HHHHHTTCC-EEEE
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeE-EEEeCCC---CHHHHHHHH-----------HHHHHCCCC-EEEE
Confidence 47888885 35563 45667777888999755 3444333 444444444 444456888 5555
Q ss_pred e
Q psy246 517 V 517 (615)
Q Consensus 517 ~ 517 (615)
+
T Consensus 70 ~ 70 (296)
T 2hqb_A 70 H 70 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 114
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=51.20 E-value=45 Score=28.11 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=34.2
Q ss_pred HHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhh-------
Q psy246 457 ANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVI------- 528 (615)
Q Consensus 457 ~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvv------- 528 (615)
.+++...+...|++++ .+..- . ..+.+.+++ + +++.|+++--|+ +.+..++
T Consensus 68 l~~~~~~~~~~g~~~~~~v~~g-~---~~~~I~~~a--------------~--~~dliV~G~~~~-~~~~~~~Gs~~~~v 126 (138)
T 3idf_A 68 TQKFSTFFTEKGINPFVVIKEG-E---PVEMVLEEA--------------K--DYNLLIIGSSEN-SFLNKIFASHQDDF 126 (138)
T ss_dssp HHHHHHHHHTTTCCCEEEEEES-C---HHHHHHHHH--------------T--TCSEEEEECCTT-STTSSCCCCTTCHH
T ss_pred HHHHHHHHHHCCCCeEEEEecC-C---hHHHHHHHH--------------h--cCCEEEEeCCCc-chHHHHhCcHHHHH
Confidence 4556666777888887 44432 2 333443333 3 677555555444 3444444
Q ss_pred cccCCCCeeccC
Q psy246 529 SGNTCYPVINCP 540 (615)
Q Consensus 529 a~~t~~PVI~vP 540 (615)
.-++.+||+-||
T Consensus 127 l~~~~~pVlvv~ 138 (138)
T 3idf_A 127 IQKAPIPVLIVK 138 (138)
T ss_dssp HHHCSSCEEEEC
T ss_pred HhcCCCCEEEeC
Confidence 224467777665
No 115
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=50.77 E-value=94 Score=29.59 Aligned_cols=130 Identities=9% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEE-ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQIL-SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~-saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
..+|++++.+.++ ..+.+.+...+++.|+... +. .... .++...+++ +.+..++++-+|+.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI~~ 72 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLI-IVYSGSA---DPEEQKHAL-----------LTAIERPVMGILLL 72 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEE-EEC-------------CHH-----------HHHHSSCCSEEEEE
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEE-EEeCCCC---CHHHHHHHH-----------HHHHhcCCCEEEEe
Confidence 4579999876554 3456677788888997653 43 4333 444433333 33344678744443
Q ss_pred ecCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCHH
Q psy246 517 VAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDFF 584 (615)
Q Consensus 517 ~AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~~ 584 (615)
....+...--.+ .....||+.+-.... .+ ++++..|+-..+..++-.++.. ....
T Consensus 73 ~~~~~~~~~~~l-~~~~iPvV~~~~~~~-----------~~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~ 139 (290)
T 3clk_A 73 SIALTDDNLQLL-QSSDVPYCFLSMGFD-----------DD-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYT 139 (290)
T ss_dssp SCC----CHHHH-HCC--CEEEESCC-------------CC-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTT
T ss_pred cccCCHHHHHHH-HhCCCCEEEEcCCCC-----------CC-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 333222111112 235678887643221 12 5566666554444443333332 1234
Q ss_pred HHHHHHHHHHHHHH
Q psy246 585 IWSKLRMYQTKLYI 598 (615)
Q Consensus 585 l~~kl~~~~~~~~~ 598 (615)
...|++.|+..+..
T Consensus 140 ~~~R~~gf~~~l~~ 153 (290)
T 3clk_A 140 GRKRLAGYKKALKE 153 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56777777766543
No 116
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=50.33 E-value=73 Score=30.21 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=70.8
Q ss_pred CCCeEEEEeCC-CCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 440 TDNLVVLALGS-SSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 440 ~~~~V~Ii~gs-~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
....|++++.+ .++ ..+.+.+.+.+++.|+... +...+. .++...+++ +.+..++++ -+|
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI 73 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYN-VVICPY---KTDCLHLEK-----------GISKENSFD-AAI 73 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSE-EEEEEE---CTTCGGGCG-----------GGSTTTCCS-EEE
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEE-EEecCC---CchhHHHHH-----------HHHhccCCC-EEE
Confidence 35689999874 333 3466777788888998875 333333 333333344 555567788 444
Q ss_pred EecCCCCCchhhhc-ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CC
Q psy246 516 AVAGKSNGLGPVIS-GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RD 582 (615)
Q Consensus 516 a~AG~~~~L~gvva-~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d 582 (615)
........ +.+.. .....||+.+-.. +++++++..|+-..+-.++-.++.. ..
T Consensus 74 i~~~~~~~-~~~~~~~~~~iPvV~~~~~-------------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~ 139 (289)
T 3g85_A 74 IANISNYD-LEYLNKASLTLPIILFNRL-------------SNKYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLN 139 (289)
T ss_dssp ESSCCHHH-HHHHHHCCCSSCEEEESCC-------------CSSSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSS
T ss_pred EecCCccc-HHHHHhccCCCCEEEECCC-------------CCCCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 43322221 22332 2346888876432 2356777777655444444443332 12
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
.....|++.|+..+.+
T Consensus 140 ~~~~~R~~gf~~~l~~ 155 (289)
T 3g85_A 140 DAMDNRNKGFIETCHK 155 (289)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4466777777776544
No 117
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=50.19 E-value=50 Score=28.33 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=27.3
Q ss_pred CCeEEEEeCCC---CCHHHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSS---SDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~~~ 472 (615)
.+.|+|.|-|+ +.=|++.+|...|++.|++++
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~ 49 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFS 49 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeE
Confidence 34688988755 667999999999999999997
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=49.31 E-value=2.2e+02 Score=29.93 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=55.1
Q ss_pred cccchhhhhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhh
Q psy246 417 EGLNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLS 494 (615)
Q Consensus 417 ~~l~~VkenY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~ 494 (615)
.|...+.+.+..+.+.. +....++.|+ |-+..++.....+++|+..+ ...+. . ..+++.++.
T Consensus 388 K~~~~li~a~~~l~~~~-------~~~~l~i~G~--~g~~~~~l~~~~~~~~l~~~~v~~~g~-~---~~~~~~~~~--- 451 (568)
T 2vsy_A 388 KLNPQSMARMLAVLREV-------PDSVLWLLSG--PGEADARLRAFAHAQGVDAQRLVFMPK-L---PHPQYLARY--- 451 (568)
T ss_dssp GCCHHHHHHHHHHHHHC-------TTCEEEEECC--STTHHHHHHHHHHHTTCCGGGEEEECC-C---CHHHHHHHG---
T ss_pred cCCHHHHHHHHHHHHhC-------CCcEEEEecC--CHHHHHHHHHHHHHcCCChhHEEeeCC-C---CHHHHHHHH---
Confidence 45555555555543321 2345677774 33455677777888999744 44442 2 556676665
Q ss_pred HHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCC
Q psy246 495 LVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPL 542 (615)
Q Consensus 495 ~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~ 542 (615)
. .++ ||+--.-...++..+=|-...+|||++|-.
T Consensus 452 --------~-----~ad-v~v~ps~~~~g~~~lEAma~G~Pvv~~~g~ 485 (568)
T 2vsy_A 452 --------R-----HAD-LFLDTHPYNAHTTASDALWTGCPVLTTPGE 485 (568)
T ss_dssp --------G-----GCS-EEECCSSSCCSHHHHHHHHTTCCEEBCCCS
T ss_pred --------h-----cCC-EEeeCCCCCCcHHHHHHHhCCCCEEeccCC
Confidence 2 355 776443332344444456678999998754
No 119
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=49.30 E-value=2e+02 Score=28.15 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++ ..+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++-+||..
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdGiIi~~ 126 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDAAGYQM-LIGNSHY---DAGQELQLL-----------RAYLQHRPDGVLITG 126 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHTTCCSEEEEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEeCCC---ChHHHHHHH-----------HHHHcCCCCEEEEeC
Confidence 4579999887665 567888889999999766 4666666 677666665 555556788555544
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc-----------CCHHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ-----------RDFFIW 586 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-----------~d~~l~ 586 (615)
......+--. ......||+.+-... +....++.+|+-.++..++-.++.. .+....
T Consensus 127 ~~~~~~~~~~-l~~~~iPvV~~~~~~------------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~ 193 (339)
T 3h5o_A 127 LSHAEPFERI-LSQHALPVVYMMDLA------------DDGRCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVM 193 (339)
T ss_dssp SCCCTTHHHH-HHHTTCCEEEEESCC------------SSSCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHH
T ss_pred CCCCHHHHHH-HhcCCCCEEEEeecC------------CCCCeEEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHH
Confidence 3322211111 123567888662111 1112255555544444443333332 134556
Q ss_pred HHHHHHHHHHHH
Q psy246 587 SKLRMYQTKLYI 598 (615)
Q Consensus 587 ~kl~~~~~~~~~ 598 (615)
.|++.|+..+..
T Consensus 194 ~R~~Gf~~al~~ 205 (339)
T 3h5o_A 194 KRLDGYRAALDA 205 (339)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 120
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=48.19 E-value=48 Score=25.79 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHH
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMK 491 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~ 491 (615)
+|.|.+.+ .=|.+.++...|++.|++++ .-...+. .+....++.
T Consensus 5 ~v~ly~~~--~Cp~C~~~~~~L~~~~i~~~~~~vd~~~---~~~~~~el~ 49 (89)
T 3msz_A 5 KVKIYTRN--GCPYCVWAKQWFEENNIAFDETIIDDYA---QRSKFYDEM 49 (89)
T ss_dssp CEEEEECT--TCHHHHHHHHHHHHTTCCCEEEECCSHH---HHHHHHHHH
T ss_pred EEEEEEcC--CChhHHHHHHHHHHcCCCceEEEeecCC---ChhHHHHHH
Confidence 45565544 44999999999999999997 4444444 444444444
No 121
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.99 E-value=2e+02 Score=27.91 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++ ..+.+.+...+++.|+... +...+. .++...+++ +.+..++++ -+|..
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~~ 123 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNII-LSNSDQ---NQDKELHLL-----------NNMLGKQVD-GIIFM 123 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEE-EEECCS---HHHHHHHHH-----------HHTSCCSSC-CEEEC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEE-EEeCCC---ChHHHHHHH-----------HHHHhCCCc-EEEEe
Confidence 4589999876555 3556777788888887653 444444 555555555 444556777 44444
Q ss_pred cCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC-------------C
Q psy246 518 AGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR-------------D 582 (615)
Q Consensus 518 AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~-------------d 582 (615)
...... ..+. .....||+.+-.... .++++++..|+-..+.+++-.++... .
T Consensus 124 ~~~~~~--~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~ 190 (332)
T 2hsg_A 124 SGNVTE--EHVEELKKSPVPVVLAASIES-----------TNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEP 190 (332)
T ss_dssp CSSCCH--HHHHHHTTSSSCEEEESCCCS-----------CTTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSH
T ss_pred cCCCCH--HHHHHHHhCCCCEEEEccccC-----------CCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccC
Confidence 332221 2222 134678887643221 12456666666554444443333321 1
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLY 597 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~ 597 (615)
.....|++.|+..+.
T Consensus 191 ~~~~~R~~Gf~~al~ 205 (332)
T 2hsg_A 191 INHAKKVKGYKRALT 205 (332)
T ss_dssp HHHTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 234566777776553
No 122
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=47.93 E-value=78 Score=29.82 Aligned_cols=126 Identities=7% Similarity=0.058 Sum_probs=64.0
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++ ..+.+.+...+++.|+... +...+ .++...+++ +.+..++++ .+| +
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~----~~~~~~~~~-----------~~l~~~~vd-giI-~ 66 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLS-VIDSL----TSQAGTDPI-----------TSALSMRPD-GII-I 66 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEE-EECSS----SSCSSSCHH-----------HHHHTTCCS-EEE-E
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEE-EEeCC----CchHHHHHH-----------HHHHhCCCC-EEE-e
Confidence 4589999988776 5677888889999998764 33333 111112222 333446787 566 4
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccCC----------HHHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRD----------FFIWS 587 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~d----------~~l~~ 587 (615)
..... ...+.. ...||+.+-.... -.++++++..|+-..+-.++-.++.... .....
T Consensus 67 ~~~~~--~~~~~~-~~iPvV~~~~~~~----------~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~ 133 (280)
T 3gyb_A 67 AQDIP--DFTVPD-SLPPFVIAGTRIT----------QASTHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLR 133 (280)
T ss_dssp ESCC-----------CCCEEEESCCCS----------SSCSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHH
T ss_pred cCCCC--hhhHhh-cCCCEEEECCCCC----------CCCCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHH
Confidence 33222 233333 6778876543220 0234666666654444333333332211 11556
Q ss_pred HHHHHHHHHH
Q psy246 588 KLRMYQTKLY 597 (615)
Q Consensus 588 kl~~~~~~~~ 597 (615)
|++.|+..+.
T Consensus 134 R~~gf~~~l~ 143 (280)
T 3gyb_A 134 RFESFEATMR 143 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 123
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=47.34 E-value=60 Score=27.48 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=27.2
Q ss_pred CCeEEEEeCCC---CCHHHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSS---SDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~~~ 472 (615)
.+.|.|.+-|+ ..=|++.++...|++.|++++
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~ 51 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFE 51 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcE
Confidence 35688888775 467899999999999999998
No 124
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=46.69 E-value=41 Score=28.63 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=35.8
Q ss_pred HHHHHHHhhccCC-Cee-EEEecccCCcchHHHHHHHHhhHHHHHHHHh-hhhcCCCCEEEEEecCCCCCchhh------
Q psy246 457 ANKIDDANHDPQW-SDE-QILSANLDNVARDEVQIMKRLSLVVFEILVM-KSWSSGKNVVFIAVAGKSNGLGPV------ 527 (615)
Q Consensus 457 ~~~~~~~l~~~gi-~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~-~~~~~~~~~V~Ia~AG~~~~L~gv------ 527 (615)
.+++...++..|+ +++ .+..- . ..+.+. + .++..+++.|+++--|.+ .+..+
T Consensus 71 l~~~~~~~~~~g~~~~~~~~~~g-~---~~~~I~--------------~~~a~~~~~dliV~G~~~~~-~~~~~~~Gs~~ 131 (146)
T 3s3t_A 71 MRQRQQFVATTSAPNLKTEISYG-I---PKHTIE--------------DYAKQHPEIDLIVLGATGTN-SPHRVAVGSTT 131 (146)
T ss_dssp HHHHHHHHTTSSCCCCEEEEEEE-C---HHHHHH--------------HHHHHSTTCCEEEEESCCSS-CTTTCSSCHHH
T ss_pred HHHHHHHHHhcCCcceEEEEecC-C---hHHHHH--------------HHHHhhcCCCEEEECCCCCC-CcceEEEcchH
Confidence 4556666777788 776 44322 2 223332 4 456678885555555543 33332
Q ss_pred --hcccCCCCeeccC
Q psy246 528 --ISGNTCYPVINCP 540 (615)
Q Consensus 528 --va~~t~~PVI~vP 540 (615)
+.-++.+||+-||
T Consensus 132 ~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 132 SYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHCSSEEEEEC
T ss_pred HHHhccCCCCEEEeC
Confidence 2235678888775
No 125
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=46.57 E-value=1.3e+02 Score=29.37 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=50.7
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEE-ecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQIL-SANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~-saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+|++++-+.++- ...+.+...+++.|+.. .+. ..+. .++.-.+.+ +.+-.++++ .||..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~~~~~~---d~~~q~~~i-----------~~li~~~vd-giii~ 67 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDV-TYDGPTEP---SVSGQVQLV-----------NNFVNQGYD-AIIVS 67 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEE-EECCCSSC---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEE-EEECCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEe
Confidence 4799998776652 23345566677888655 343 3455 565554444 444456788 66665
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCC
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPP 541 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~ 541 (615)
+..+.++..++.- ....|||.+-.
T Consensus 68 ~~~~~~~~~~~~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 68 AVSPDGLCPALKRAMQRGVKILTWDS 93 (316)
T ss_dssp CSSSSTTHHHHHHHHHTTCEEEEESS
T ss_pred CCCHHHHHHHHHHHHHCcCEEEEecC
Confidence 5555555555532 35789998743
No 126
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=46.49 E-value=2.3e+02 Score=28.03 Aligned_cols=130 Identities=11% Similarity=0.026 Sum_probs=69.7
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++- .+.+.+...+++.|+... ++..+. .++...+++ +.+..++++-+|+..
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI~~~ 130 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATI-ITNSNE---DATTMSGSL-----------EFLTSHGVDGIICVP 130 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEE-EEECTT---CHHHHHHHH-----------HHHHHTTCSCEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEE-EEeCCC---CHHHHHHHH-----------HHHHhCCCCEEEEeC
Confidence 35799999776653 456677788888998764 444455 555555554 334445677344432
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCH
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDF 583 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~ 583 (615)
.... ...+.. ....||+.+-....+ .++++++.+|+-..+..++-.++.. ...
T Consensus 131 ~~~~---~~~~~~l~~~~iPvV~i~~~~~~----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~ 197 (348)
T 3bil_A 131 NEEC---ANQLEDLQKQGMPVVLVDRELPG----------DSTIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTS 197 (348)
T ss_dssp CGGG---HHHHHHHHHC-CCEEEESSCCSC----------C-CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSH
T ss_pred CCCC---hHHHHHHHhCCCCEEEEcccCCC----------CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCc
Confidence 2222 122221 246788876432211 1346677777665554444444332 123
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 ~l~~kl~~~~~~~~~ 598 (615)
....|++.|+..+.+
T Consensus 198 ~~~~R~~Gf~~al~~ 212 (348)
T 3bil_A 198 TGRERLEDFKAACAN 212 (348)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 456788888776544
No 127
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=45.53 E-value=2e+02 Score=27.13 Aligned_cols=125 Identities=8% Similarity=0.048 Sum_probs=71.6
Q ss_pred CCCeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 440 TDNLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 440 ~~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...+|++++.+.++ ..+.+.+.+.+++.|+.+-.+...+. .++.-.+++ +.+..++++ -+|.
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giIi 73 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNS---DVKKYQNAI-----------INFENNNVD-GIIT 73 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSC---CHHHHHHHH-----------HHHHHTTCS-EEEE
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCC---ChHHHHHHH-----------HHHHhCCCC-EEEE
Confidence 34689999988776 34566778888999998235666666 666665555 555556788 4444
Q ss_pred ecCCCCCchhhhcccCCCCeeccCCC-CCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCH
Q psy246 517 VAGKSNGLGPVISGNTCYPVINCPPL-DSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDF 583 (615)
Q Consensus 517 ~AG~~~~L~gvva~~t~~PVI~vP~~-~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~ 583 (615)
.. ..+.-. .....||+.+-.. .. .+++ ++..|+ ..++..|++-|.. ...
T Consensus 74 ~~---~~~~~~--~~~~iPvV~~~~~~~~-----------~~~~-~V~~D~-~~~g~~a~~~L~~G~~~I~~i~~~~~~~ 135 (277)
T 3hs3_A 74 SA---FTIPPN--FHLNTPLVMYDSANIN-----------DDIV-RIVSNN-TKGGKESIKLLSKKIEKVLIQHWPLSLP 135 (277)
T ss_dssp EC---CCCCTT--CCCSSCEEEESCCCCC-----------SSSE-EEEECH-HHHHHHHHHTSCTTCCEEEEEESCTTSH
T ss_pred cc---hHHHHH--HhCCCCEEEEcccccC-----------CCCE-EEEECh-HHHHHHHHHHHHhCCCEEEEEeCCCcCc
Confidence 43 222221 2345777766433 21 1234 444443 4455555555432 123
Q ss_pred HHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLY 597 (615)
Q Consensus 584 ~l~~kl~~~~~~~~ 597 (615)
....|++.|+..+.
T Consensus 136 ~~~~R~~Gf~~~l~ 149 (277)
T 3hs3_A 136 TIRERIEAMTAEAS 149 (277)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 45667777776554
No 128
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=45.45 E-value=34 Score=34.84 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=54.4
Q ss_pred hhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHh
Q psy246 424 LNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVM 503 (615)
Q Consensus 424 enY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~ 503 (615)
++|.++++++..- ...| |++|+.+|.+.++++...+. -+. ....-.. +..++..++ +
T Consensus 204 ~~~~~l~~~l~~~----g~~v-vl~g~~~e~~~~~~i~~~~~---~~~-~~l~g~~---sl~e~~ali-----------~ 260 (349)
T 3tov_A 204 ERFAHVADYFGRL----GYKT-VFFGGPMDLEMVQPVVEQME---TKP-IVATGKF---QLGPLAAAM-----------N 260 (349)
T ss_dssp HHHHHHHHHHHHH----TCEE-EECCCTTTHHHHHHHHHTCS---SCC-EECTTCC---CHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHhC----CCeE-EEEeCcchHHHHHHHHHhcc---ccc-EEeeCCC---CHHHHHHHH-----------H
Confidence 4677888777531 1234 56899999998888765443 111 1111122 666666665 3
Q ss_pred hhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCCCC
Q psy246 504 KSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 504 ~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
.++ ++|+.-.+..||+ +....|+|++--++
T Consensus 261 -----~a~-~~i~~DsG~~HlA----aa~g~P~v~lfg~t 290 (349)
T 3tov_A 261 -----RCN-LLITNDSGPMHVG----ISQGVPIVALYGPS 290 (349)
T ss_dssp -----TCS-EEEEESSHHHHHH----HTTTCCEEEECSSC
T ss_pred -----hCC-EEEECCCCHHHHH----HhcCCCEEEEECCC
Confidence 366 9999866666764 45688999976544
No 129
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=45.22 E-value=96 Score=29.52 Aligned_cols=129 Identities=9% Similarity=0.088 Sum_probs=68.6
Q ss_pred CCeEEEEeCC-C---CC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEE
Q psy246 441 DNLVVLALGS-S---SD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVV 513 (615)
Q Consensus 441 ~~~V~Ii~gs-~---SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V 513 (615)
..+|++++.+ . ++ ..+.+.+...+++.|+.. .+..... .++...+++ +.+..++++ .
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-g 67 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFV-LPFPFSE---DRSQIDIYR-----------DLIRSGNVD-G 67 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEE-EECCCCS---STTCCHHHH-----------HHHHTTCCS-E
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEE-EEEeCCC---chHHHHHHH-----------HHHHcCCCC-E
Confidence 3578888766 4 33 466778888888999765 3444443 333333333 333446787 4
Q ss_pred EEEecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc-----------
Q psy246 514 FIAVAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ----------- 580 (615)
Q Consensus 514 ~Ia~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~----------- 580 (615)
+|........ ..+. .....||+.+-.... .++++++..|+-..+..++-.++..
T Consensus 68 iIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 134 (287)
T 3bbl_A 68 FVLSSINYND--PRVQFLLKQKFPFVAFGRSNP-----------DWDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP 134 (287)
T ss_dssp EEECSCCTTC--HHHHHHHHTTCCEEEESCCST-----------TCCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred EEEeecCCCc--HHHHHHHhcCCCEEEECCcCC-----------CCCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 5544332221 2221 234688887643221 1346666666554444433333321
Q ss_pred -CCHHHHHHHHHHHHHHHH
Q psy246 581 -RDFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 581 -~d~~l~~kl~~~~~~~~~ 598 (615)
.......|++.|+..+.+
T Consensus 135 ~~~~~~~~R~~Gf~~~l~~ 153 (287)
T 3bbl_A 135 EDSRVGNDRLQGYLEAMQT 153 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 123456777777766543
No 130
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=44.21 E-value=39 Score=34.30 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=55.5
Q ss_pred CeEEEEeCCCCC----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSD----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.+++||.-..|- ....+++...|+..|++++-...- .+....+++ +.+...+++ ++| +
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~-----~~~~a~~~~-----------~~~~~~~~d-~vv-v 86 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE-----KIGDATLEA-----------ERAMHENYD-VLI-A 86 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC-----STTHHHHHH-----------HHHTTTTCS-EEE-E
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec-----CcchHHHHH-----------HHHhhcCCC-EEE-E
Confidence 357887655553 367789999999999887633222 223344444 333345676 444 4
Q ss_pred cCCCCCchhhhccc----CCCCeeccCCCCC
Q psy246 518 AGKSNGLGPVISGN----TCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~L~gvva~~----t~~PVI~vP~~~~ 544 (615)
+|+.+.+-.|+.++ +..|+..+|.-++
T Consensus 87 ~GGDGTv~~v~~~l~~~~~~~pl~iIP~GT~ 117 (337)
T 2qv7_A 87 AGGDGTLNEVVNGIAEKPNRPKLGVIPMGTV 117 (337)
T ss_dssp EECHHHHHHHHHHHTTCSSCCEEEEEECSSC
T ss_pred EcCchHHHHHHHHHHhCCCCCcEEEecCCcH
Confidence 57788888888776 5778899997553
No 131
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=42.46 E-value=66 Score=31.82 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=14.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQW 469 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi 469 (615)
.++|+||||+++- +...++..|-+-|.
T Consensus 6 ~gKvalVTGas~G--IG~aiA~~la~~Ga 32 (254)
T 4fn4_A 6 KNKVVIVTGAGSG--IGRAIAKKFALNDS 32 (254)
T ss_dssp TTCEEEEETTTSH--HHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCH--HHHHHHHHHHHcCC
Confidence 3567777777663 33444444544443
No 132
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=41.91 E-value=70 Score=32.93 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=30.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEec---cc--CCcchHHHHHHHH
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSA---NL--DNVARDEVQIMKR 492 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~sa---HR--~~~~p~~~~~~~~ 492 (615)
+++||+-|++|+|.- .++++||..- .|.-= .+ ..++++++.+..+
T Consensus 36 ki~IvTDSt~dL~~e-----~~~~~~I~vvPL~v~~~~~~Y~D~~di~~~efy~~m~ 87 (315)
T 3fys_A 36 NIAVVTDSTAYIPKE-----MREQHQIHMIPLQVVFREETYREEIELDWKSFYEEVK 87 (315)
T ss_dssp CEEEEEEGGGCCCHH-----HHHHHTEEEECCEEECSSCEEEBTTTBCHHHHHHHHH
T ss_pred cEEEEEECCCCCCHH-----HHHhCCeEEEeEEEEECCEEEECCCCCCHHHHHHHHH
Confidence 699999999999953 4456777654 33211 11 3678999887774
No 133
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=41.70 E-value=35 Score=29.65 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=35.7
Q ss_pred HHHHHHHhhccCCC-ee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhh-hhcCCCCEEEEEecCCCCC---chh---h
Q psy246 457 ANKIDDANHDPQWS-DE-QILSANLDNVARDEVQIMKRLSLVVFEILVMK-SWSSGKNVVFIAVAGKSNG---LGP---V 527 (615)
Q Consensus 457 ~~~~~~~l~~~gi~-~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~-~~~~~~~~V~Ia~AG~~~~---L~g---v 527 (615)
.+++.+.++..|++ ++ .+..... ..+.+. +. ++..+++.|+++--|+++. +++ -
T Consensus 81 l~~~~~~~~~~g~~~~~~~v~~~g~---~~~~I~--------------~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~ 143 (156)
T 3fg9_A 81 VAEYVQLAEQRGVNQVEPLVYEGGD---VDDVIL--------------EQVIPEFKPDLLVTGADTEFPHSKIAGAIGPR 143 (156)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEECSC---HHHHHH--------------HTHHHHHCCSEEEEETTCCCTTSSSCSCHHHH
T ss_pred HHHHHHHHHHcCCCceEEEEEeCCC---HHHHHH--------------HHHHHhcCCCEEEECCCCCCccceeecchHHH
Confidence 44555666777884 66 4443222 223333 44 4556788566655555431 222 2
Q ss_pred hcccCCCCeeccC
Q psy246 528 ISGNTCYPVINCP 540 (615)
Q Consensus 528 va~~t~~PVI~vP 540 (615)
|.-++.+||+-||
T Consensus 144 vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 144 LARKAPISVIVVR 156 (156)
T ss_dssp HHHHCSSEEEEEC
T ss_pred HHHhCCCCEEEeC
Confidence 3346678887765
No 134
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=40.27 E-value=2.7e+02 Score=27.09 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++...++- .+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ -+|..
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~~ 126 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASMYKYNM-ILANSDN---DVEKEEKVL-----------ETFLSKQVD-GIVYM 126 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE-EEEECCC---ChHHHHHHH-----------HHHHhCCCC-EEEEe
Confidence 45899999766553 45566777788888765 4445555 565555454 334446787 45544
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCH
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDF 583 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~ 583 (615)
..... ...+.. ....||+.+-.... .++++++..|+-..+..++-.++.. ...
T Consensus 127 ~~~~~--~~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~ 193 (332)
T 2o20_A 127 GSSLD--EKIRTSLKNSRTPVVLVGTIDG-----------DKEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDV 193 (332)
T ss_dssp SSCCC--HHHHHHHHHHCCCEEEESCCCT-----------TSCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSH
T ss_pred CCCCC--HHHHHHHHhCCCCEEEEccccC-----------CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccc
Confidence 32211 222221 34678887643221 1345666666554444433333322 123
Q ss_pred HHHHHHHHHHHHHHH
Q psy246 584 FIWSKLRMYQTKLYI 598 (615)
Q Consensus 584 ~l~~kl~~~~~~~~~ 598 (615)
....|+..|+..+.+
T Consensus 194 ~~~~R~~Gf~~al~~ 208 (332)
T 2o20_A 194 ENTERMVGYQEALLE 208 (332)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 456777777766543
No 135
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=38.43 E-value=33 Score=32.54 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=46.6
Q ss_pred CCeEEEEeCCCCCHH-HHHHHHHHhhc--cCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 441 DNLVVLALGSSSDLP-FANKIDDANHD--PQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~-~~~~~~~~l~~--~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
..+|++|.=|+||.. ..+-....+.. .++... ++-.-.+ +.+...++......+.+.+.. .+..|++.|+|
T Consensus 6 ~~~ig~i~p~~~~~~~e~~~~~~~~~~~~p~~~i~~~~~p~g~~---~~~~~~~~~~~~~~l~~~~~~-l~~~g~d~ivi 81 (228)
T 2eq5_A 6 KYTIGLIRVITLEDKEILNLHGRIIESAFPELKVVSRCIEDQPK---GIYNEETEREAEPKIIRLAKE-FEREGVDAIII 81 (228)
T ss_dssp CEEEEEEESSCCCCHHHHTHHHHHHHHHCTTEEEEEEECSSCTT---CCSSHHHHHHHHHHHHHHHHH-HHHTTCSEEEE
T ss_pred ceEEEEEeccCccCHHHHHHHHHHHHhhCCCCeEEEEeCCCCch---hccccccHHHhHHHHHHHHHH-HHHCCCCEEEE
Confidence 357999999986533 22222232222 233222 2222122 444444443333344454433 34568996777
Q ss_pred EecCCCCCchhhhcccCCCCeecc
Q psy246 516 AVAGKSNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 516 a~AG~~~~L~gvva~~t~~PVI~v 539 (615)
++.+. .++. -+...+..||||+
T Consensus 82 aCnta-~~~~-~l~~~~~iPvi~i 103 (228)
T 2eq5_A 82 SCAAD-PAVE-KVRKLLSIPVIGA 103 (228)
T ss_dssp CSTTC-TTHH-HHHHHCSSCEEEH
T ss_pred eCCch-HHHH-HHHHhCCCCEeCc
Confidence 76544 3333 3444568899984
No 136
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=37.99 E-value=2.4e+02 Score=25.95 Aligned_cols=126 Identities=7% Similarity=-0.057 Sum_probs=69.1
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
..|++++.+.++ ..+.+.+.+.+++.|+.. .+...+. .++...+++ +....++++-+|+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDP-IMMESQF---SPQLVAEHL-----------GVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEE-EEEECTT---CHHHHHHHH-----------HHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEE-EEEeCCC---cHHHHHHHH-----------HHHHhcCCCEEEEecC
Confidence 479999877666 345667778888889765 4445555 566555554 4444567874444432
Q ss_pred CCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------C-HHH
Q psy246 519 GKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------D-FFI 585 (615)
Q Consensus 519 G~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d-~~l 585 (615)
...... .+.. ...||+.+-.. +++++++..|+-..+.+++-.++... + ...
T Consensus 68 -~~~~~~-~l~~-~~~pvV~~~~~-------------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~ 131 (255)
T 1byk_A 68 -TGITEE-MLAH-WQSSLVLLARD-------------AKGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTG 131 (255)
T ss_dssp -TTCCTT-TSGG-GSSSEEEESSC-------------CSSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTT
T ss_pred -ccccHH-HHHh-cCCCEEEEccc-------------cCCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccH
Confidence 222222 2222 24677765211 13567777776555544444333321 1 234
Q ss_pred HHHHHHHHHHHHH
Q psy246 586 WSKLRMYQTKLYI 598 (615)
Q Consensus 586 ~~kl~~~~~~~~~ 598 (615)
..|++.|+..+.+
T Consensus 132 ~~R~~gf~~al~~ 144 (255)
T 1byk_A 132 KRRHEAYLAFCKA 144 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777766543
No 137
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=37.95 E-value=69 Score=28.17 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=25.2
Q ss_pred hhhhcCCCCEEEEEecCCCCC----chhh---hcccCCCCeeccCCCCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNG----LGPV---ISGNTCYPVINCPPLDS 544 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~----L~gv---va~~t~~PVI~vP~~~~ 544 (615)
+.+++.+++.|+++--|.++- ++++ |.-++.+||+-||....
T Consensus 111 ~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~~ 159 (170)
T 2dum_A 111 KVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDE 159 (170)
T ss_dssp HHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCCC
T ss_pred HHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCCc
Confidence 444556788666665555431 2222 33467899999997653
No 138
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=36.84 E-value=2.7e+02 Score=26.20 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=46.5
Q ss_pred eEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecC
Q psy246 443 LVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAG 519 (615)
Q Consensus 443 ~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG 519 (615)
+|++++.+.++ ..+.+.+...+++.|+.. -+++... .+++-.+.+ +.+-.++++ -+|....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~~~ 66 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELGYKI-IVEDSQN---DSSKELSNV-----------EDLIQQKVD-VLLINPV 66 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHTCEE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEECCS
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcCcEE-EEecCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeCC
Confidence 68888877666 245667777888888765 4444444 555544444 333345677 4444433
Q ss_pred CCCCchhhhcc--cCCCCeeccC
Q psy246 520 KSNGLGPVISG--NTCYPVINCP 540 (615)
Q Consensus 520 ~~~~L~gvva~--~t~~PVI~vP 540 (615)
....+...+.. ....||+.+-
T Consensus 67 ~~~~~~~~~~~~~~~~iPvV~~~ 89 (283)
T 2ioy_A 67 DSDAVVTAIKEANSKNIPVITID 89 (283)
T ss_dssp STTTTHHHHHHHHHTTCCEEEES
T ss_pred chhhhHHHHHHHHHCCCeEEEec
Confidence 33333233322 3467888763
No 139
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=36.80 E-value=51 Score=29.26 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCC----chhh---hc
Q psy246 458 NKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNG----LGPV---IS 529 (615)
Q Consensus 458 ~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~----L~gv---va 529 (615)
+++...++..|++++ .+..- . ..+.+. +.++..+++.|+++--|+++- ++++ |.
T Consensus 90 ~~~~~~~~~~g~~~~~~v~~G-~---~~~~I~--------------~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl 151 (175)
T 2gm3_A 90 EFFVNKCHEIGVGCEAWIKTG-D---PKDVIC--------------QEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCV 151 (175)
T ss_dssp HHHHHHHHHHTCEEEEEEEES-C---HHHHHH--------------HHHHHHCCSEEEEEECCCC--------CHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEecC-C---HHHHHH--------------HHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHH
Confidence 344455566788777 44422 1 223333 334555788677776666431 2222 33
Q ss_pred ccCCCCeeccCCCC
Q psy246 530 GNTCYPVINCPPLD 543 (615)
Q Consensus 530 ~~t~~PVI~vP~~~ 543 (615)
-++.+||+-||...
T Consensus 152 ~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 152 KHAECPVMTIKRNA 165 (175)
T ss_dssp HHCSSCEEEEECCG
T ss_pred hCCCCCEEEEcCCc
Confidence 46789999998643
No 140
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.57 E-value=1.4e+02 Score=27.83 Aligned_cols=120 Identities=13% Similarity=-0.030 Sum_probs=64.0
Q ss_pred CCeEEEEeCCCCCHH---HHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDLP---FANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~---~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|+++.|...... ..+...+++++.|++...+...+. +++...+.+ -+.|.+. . ...+ .|++.
T Consensus 120 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~---~~~~~~~~~------~~~l~~~-~-~~~~-ai~~~ 187 (272)
T 3o74_A 120 PRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAF---SRECGQRLM------QQLIDDL-G-GLPD-ALVTT 187 (272)
T ss_dssp CSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSS---SHHHHHHHH------HHHHHHH-T-SCCS-EEEES
T ss_pred CcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCC---CHHHHHHHH------HHHHhcC-C-CCCc-EEEEe
Confidence 458999998765543 445667778889987765554444 555543332 2222221 1 1355 77775
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcCCCCceeeeec-ChhhHHHHHHHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNLPAGIACSTVT-APSNAALAAAQIL 578 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqmp~Gv~v~tv~-~~~nAa~~A~~Il 578 (615)
.+. ...|++.+....=+ +|-..+ |.|...-.-.+.|+ ..||. ++..-|..|+++|
T Consensus 188 ~d~--~a~g~~~al~~~g~--vp~di~vvg~d~~~~~~~~~p~--lttv~~~~~~~g~~a~~~l 245 (272)
T 3o74_A 188 SYV--LLQGVFDTLQARPV--DSRQLQLGTFGDNQLLDFLPLP--VNAMAQQHGQIAATALELA 245 (272)
T ss_dssp SHH--HHHHHHHHHHTSCG--GGCCCEEEEESCCGGGGTSSSC--EEEEECCHHHHHHHHHHHH
T ss_pred Cch--HHHHHHHHHHHcCC--CccceEEEEeCChHHHHhcCCC--ceEEEeCHHHHHHHHHHHH
Confidence 443 23355555554433 465444 66554322233343 45663 5555566666655
No 141
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=36.33 E-value=57 Score=32.92 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=59.1
Q ss_pred cCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEE-ec-----ccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCC
Q psy246 437 KRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQIL-SA-----NLDNVARDEVQIMKRLSLVVFEILVMKSWSSGK 510 (615)
Q Consensus 437 k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~-sa-----HR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~ 510 (615)
+.+....|+|+=.|--=+.+++++...|-.-.+-| +. ++ .| +++++.+++ .++. +..+..|+
T Consensus 20 ~~~~~~~IgvfDSGvGGLtv~~~i~~~lP~e~~iy--~~D~a~~PYG~k---s~e~i~~~~------~~~~-~~L~~~g~ 87 (274)
T 3uhf_A 20 FQSNAMKIGVFDSGVGGLSVLKSLYEARLFDEIIY--YGDTARVPYGVK---DKDTIIKFC------LEAL-DFFEQFQI 87 (274)
T ss_dssp CCCSCCEEEEEESSSTTHHHHHHHHHTTCCSEEEE--EECTTTCCCTTS---CHHHHHHHH------HHHH-HHHTTSCC
T ss_pred ccCCCCeEEEEECCCChHHHHHHHHHHCCCCCEEE--EecCCCCCCCCC---CHHHHHHHH------HHHH-HHHHHCCC
Confidence 34445679999999999999999998773322221 11 11 36 788887775 3343 23355799
Q ss_pred CEEEEEecCCCC-CchhhhcccCCCCeeccC
Q psy246 511 NVVFIAVAGKSN-GLGPVISGNTCYPVINCP 540 (615)
Q Consensus 511 ~~V~Ia~AG~~~-~L~gvva~~t~~PVI~vP 540 (615)
+.++||+-..++ +|.- +....+.||||+-
T Consensus 88 d~IVIACNTa~~~al~~-lr~~~~iPvigii 117 (274)
T 3uhf_A 88 DMLIIACNTASAYALDA-LRAKAHFPVYGVI 117 (274)
T ss_dssp SEEEECCHHHHHHSHHH-HHHHCSSCEECSH
T ss_pred CEEEEeCCChhHHHHHH-HHHhcCCCEEcCC
Confidence 967777765553 2444 4556689999974
No 142
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=36.13 E-value=1.4e+02 Score=26.23 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=36.7
Q ss_pred CCCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcCCCCceeeeec-ChhhHHHHHHHHHcc-CCHH
Q psy246 509 GKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNLPAGIACSTVT-APSNAALAAAQILAQ-RDFF 584 (615)
Q Consensus 509 ~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqmp~Gv~v~tv~-~~~nAa~~A~~Il~~-~d~~ 584 (615)
.++ +||.-+|.. .-.=|....+|+|.+|.... +....+ .+ .|+.+. +. +-.++.-++..|..+ .|+.
T Consensus 86 ~ad-~~I~~~G~~---t~~Ea~~~G~P~i~~p~~~~Q~~na~~l--~~--~g~g~~-~~~~~~~~~~l~~~i~~ll~~~~ 156 (170)
T 2o6l_A 86 KTR-AFITHGGAN---GIYEAIYHGIPMVGIPLFADQPDNIAHM--KA--RGAAVR-VDFNTMSSTDLLNALKRVINDPS 156 (170)
T ss_dssp TEE-EEEECCCHH---HHHHHHHHTCCEEECCCSTTHHHHHHHH--HT--TTSEEE-CCTTTCCHHHHHHHHHHHHHCHH
T ss_pred CcC-EEEEcCCcc---HHHHHHHcCCCEEeccchhhHHHHHHHH--HH--cCCeEE-eccccCCHHHHHHHHHHHHcCHH
Confidence 355 888765531 11122345699999998643 222222 12 344333 22 112333344444433 4666
Q ss_pred HHHHHHHHHH
Q psy246 585 IWSKLRMYQT 594 (615)
Q Consensus 585 l~~kl~~~~~ 594 (615)
++++.+..+.
T Consensus 157 ~~~~a~~~~~ 166 (170)
T 2o6l_A 157 YKENVMKLSR 166 (170)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 143
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=35.69 E-value=1.5e+02 Score=27.78 Aligned_cols=80 Identities=16% Similarity=0.082 Sum_probs=48.0
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++- .+.+.+...+++.|+.. .+...+. .++...+++ +.+..++++ -||..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~~-----------~~l~~~~~d-giIi~ 71 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQV-LIGNSDN---DIKKAQGYL-----------ATFVSHNCT-GMIST 71 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCE-EEEECTT---CHHHHHHHH-----------HHHHHTTCS-EEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE-EEEeCCC---CHHHHHHHH-----------HHHHhCCCC-EEEEe
Confidence 45799999887663 34566777888899877 4566666 666666565 445556788 45544
Q ss_pred cCCCCCchhhhc---ccCCCCeeccC
Q psy246 518 AGKSNGLGPVIS---GNTCYPVINCP 540 (615)
Q Consensus 518 AG~~~~L~gvva---~~t~~PVI~vP 540 (615)
... +..+. .....|||.+-
T Consensus 72 ~~~----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 72 AFN----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp GGG----HHHHHHHHHHC-CCEEEGG
T ss_pred cCC----hHHHHHHHHcCCCCEEEEe
Confidence 421 22222 23467887664
No 144
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=35.59 E-value=2.4e+02 Score=27.80 Aligned_cols=129 Identities=11% Similarity=0.010 Sum_probs=66.4
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcc-hHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVA-RDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~-p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
...|++++.+.++- .+.+.+...+++.|+... +...+. . ++...+++ +.+..++++-+||.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~~l-----------~~l~~~~vdGiIi~ 125 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQIVAAILSRADQLGASVV-VSMVER---SGVEACKTAV-----------HNLLAQRVSGLIIN 125 (349)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-EEECCS---SSHHHHHHHH-----------HHHHTTTCSCEEEE
T ss_pred CCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEE-EEeCCC---CcHHHHHHHH-----------HHHHHCCCCEEEEe
Confidence 45899999776552 455677788888897664 444443 2 34443443 33334567734443
Q ss_pred ecCCCCCchhh--hcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CC
Q psy246 517 VAGKSNGLGPV--ISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RD 582 (615)
Q Consensus 517 ~AG~~~~L~gv--va~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d 582 (615)
...... ... .......||+.+-... +++++++..|+-.++.+++-.++.. ..
T Consensus 126 -~~~~~~-~~~~~~~~~~~iPvV~i~~~~------------~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~ 191 (349)
T 1jye_A 126 -YPLDDQ-DAIAVEAACTNVPALFLDVSD------------QTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSS 191 (349)
T ss_dssp -SCCCHH-HHHHHHHHTTTSCEEESSSCT------------TSSSCEEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTS
T ss_pred -cCCCCh-hHHHHHHhhCCCCEEEEcccC------------CCCCCEEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 222111 111 1223467888753211 1245666666544433333333321 12
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
.....|++.|+..+.+
T Consensus 192 ~~~~~R~~Gf~~al~~ 207 (349)
T 1jye_A 192 VSARLRLAGWHKYLTR 207 (349)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3456778888776543
No 145
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.57 E-value=2.5e+02 Score=26.55 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=50.6
Q ss_pred CeEEEEeCCCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.+|++++.+.++ ..+.+.+...+++.|+... +.+. . .+++..+.+ +.+-.++++ .||...
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~-~---~~~~~~~~i-----------~~l~~~~vd-giii~~ 65 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAV-P---DGEKTLNAI-----------DSLAASGAK-GFVICT 65 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEE-EEEC-C---SHHHHHHHH-----------HHHHHTTCC-EEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEE-EeCC-C---CHHHHHHHH-----------HHHHHcCCC-EEEEeC
Confidence 378999887776 3455667778888887664 4444 3 566555555 444456788 555554
Q ss_pred CCCCCchhhh--cccCCCCeeccC
Q psy246 519 GKSNGLGPVI--SGNTCYPVINCP 540 (615)
Q Consensus 519 G~~~~L~gvv--a~~t~~PVI~vP 540 (615)
.........+ +.....||+.+-
T Consensus 66 ~~~~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 66 PDPKLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CCchhhHHHHHHHHHCCCcEEEeC
Confidence 4444444443 223578998765
No 146
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=35.24 E-value=73 Score=27.75 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=25.7
Q ss_pred CCeEEEEeCCC---CCHHHHHHHHHHhhccCCC
Q psy246 441 DNLVVLALGSS---SDLPFANKIDDANHDPQWS 470 (615)
Q Consensus 441 ~~~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~ 470 (615)
.+.|.|.|-|+ .-=|++.++...|++.|++
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~ 47 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVD 47 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBC
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCC
Confidence 34699998876 3578999999999999999
No 147
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=35.09 E-value=69 Score=30.99 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=62.3
Q ss_pred CCeEEEEeCCCCCHH---HHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDLP---FANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~---~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|+++.|...... ..+...+++++.|++...+....- +++...+.+ -+.|.+ ....+ +|++.
T Consensus 123 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~---~~~~~~~~~------~~~l~~---~~~~~-ai~~~ 189 (313)
T 2h3h_A 123 KGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEE---DGARAVSLA------EAALNA---HPDLD-AFFGV 189 (313)
T ss_dssp CSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSS---CHHHHHHHH------HHHHHH---CTTCC-EEEEC
T ss_pred CCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCC---CHHHHHHHH------HHHHHH---CcCce-EEEEc
Confidence 358999999755433 345567788888988763333333 444433322 122222 12355 77776
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhc-CCCCceeeeec-ChhhHHHHHHHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLN-LPAGIACSTVT-APSNAALAAAQIL 578 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lq-mp~Gv~v~tv~-~~~nAa~~A~~Il 578 (615)
... .++ |++.+.... |+|-..+ |.|..-...+ +.+|.+.+||. ++..-|..|+++|
T Consensus 190 ~d~-~a~-g~~~al~~~---G~p~dv~vvg~d~~~~~~~~~~~g~~lttv~~~~~~~g~~av~~l 249 (313)
T 2h3h_A 190 YAY-NGP-AQALVVKNA---GKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVL 249 (313)
T ss_dssp STT-HHH-HHHHHHHHT---TCTTTSEEEEECCCHHHHHHHHHTSCSEEEECCHHHHHHHHHHHH
T ss_pred CCC-ccH-HHHHHHHHc---CCCCCeEEEEeCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHH
Confidence 543 223 444444332 2343333 5554433332 24566677774 5666666666654
No 148
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=34.84 E-value=45 Score=33.40 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=48.0
Q ss_pred CeEEEEeCCCCCHH---HHHHHHHHhhc----cCCCeeEEEecccCCcchHHHHHHHH----hhHHHHHHHHhhhhcCCC
Q psy246 442 NLVVLALGSSSDLP---FANKIDDANHD----PQWSDEQILSANLDNVARDEVQIMKR----LSLVVFEILVMKSWSSGK 510 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~---~~~~~~~~l~~----~gi~~~~V~saHR~~~~p~~~~~~~~----~~~~~~~~l~~~~~~~~~ 510 (615)
..++|+ ||-+=.. +.+++...... ...|+ .+.|.-. -|++...+.. ....+.++. +..+..|+
T Consensus 27 k~IGii-GGmg~~aT~~~~~~i~~~~~~~~D~~h~p~-~~~s~~~---i~~r~~~~~~~g~~~~~~l~~~~-~~L~~~Ga 100 (268)
T 3s81_A 27 HTIGIL-GGMGPAATADMLEKFVELRHASCDQQHIPL-IVSSIPD---IPDRTACLLSGGPSPYRYLERYL-HMLEDAGA 100 (268)
T ss_dssp CCEEEE-CCSSHHHHHHHHHHHHHHSCCSSGGGSCCE-EEEECTT---SCCHHHHHHHCCCCSHHHHHHHH-HHHHHTTC
T ss_pred CcEEEE-ecCCHHHHHHHHHHHHHhhHhhcCCCCCCE-EEeccCC---HHHHHHHHHhCCchHHHHHHHHH-HHHHHcCC
Confidence 369999 7777666 55555554421 23333 4444322 2333311110 011122222 34456799
Q ss_pred CEEEEEecCCCCCchhhhcccCCCCeeccC
Q psy246 511 NVVFIAVAGKSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 511 ~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP 540 (615)
+.++||+-.++.+++- +...+..||||+.
T Consensus 101 d~IVIaCNTah~~l~~-lr~~~~iPvigii 129 (268)
T 3s81_A 101 ECIVIPCNTAHYWFDD-LQNVAKARMISIL 129 (268)
T ss_dssp SEEECSCSGGGGGHHH-HHHHCSSEEECHH
T ss_pred CEEEEeCCCHHHHHHH-HHHHCCCCEEccc
Confidence 9666666665555544 4456789999963
No 149
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=34.52 E-value=3.3e+02 Score=26.40 Aligned_cols=101 Identities=3% Similarity=-0.039 Sum_probs=55.9
Q ss_pred hhhHHHHHHHhhcccC------CCCCeEEEEeCC-CCC---HHHHHHHHHHhhccCCCee-EEEecc--cCCcchHHHHH
Q psy246 423 KLNFTWIADTLASVKR------PTDNLVVLALGS-SSD---LPFANKIDDANHDPQWSDE-QILSAN--LDNVARDEVQI 489 (615)
Q Consensus 423 kenY~eVA~~L~~~k~------~~~~~V~Ii~gs-~SD---~~~~~~~~~~l~~~gi~~~-~V~saH--R~~~~p~~~~~ 489 (615)
.+.-.++++.+...+. ....+|++++.+ .++ ..+.+.+...+++.|+.+. .++..+ . .++.-.+
T Consensus 19 r~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~~~~ 95 (342)
T 1jx6_A 19 RNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNA---DIKQQSL 95 (342)
T ss_dssp HHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTC---CHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCcc---CHHHHHH
Confidence 3344455666654322 123579999877 333 2566778888899998876 443444 4 4554444
Q ss_pred HHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcc--cCCCCeecc
Q psy246 490 MKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISG--NTCYPVINC 539 (615)
Q Consensus 490 ~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~--~t~~PVI~v 539 (615)
++ +.+..++++ .||. .+........+.- ....||+.+
T Consensus 96 ~i-----------~~l~~~~vd-giIi-~~~~~~~~~~~~~~~~~~ip~V~~ 134 (342)
T 1jx6_A 96 SL-----------MEALKSKSD-YLIF-TLDTTRHRKFVEHVLDSTNTKLIL 134 (342)
T ss_dssp HH-----------HHHHHTTCS-EEEE-CCSSSTTHHHHHHHHHHCSCEEEE
T ss_pred HH-----------HHHHhcCCC-EEEE-eCChHhHHHHHHHHHHcCCCEEEE
Confidence 44 333445787 4444 4444433333332 235787644
No 150
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=34.43 E-value=2.9e+02 Score=25.81 Aligned_cols=131 Identities=8% Similarity=0.088 Sum_probs=68.7
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
..|++++.+.++- .+.+.+...+++.|+.. -++..+. .++.-.+++ +.+..++++ -+|..+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~-~~~~~~~---~~~~~~~~i-----------~~l~~~~vd-giIi~~ 65 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL-VVLDSQN---NPAKELANV-----------QDLTVRGTK-ILLINP 65 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEE-EEEECTT---CHHHHHHHH-----------HHHTTTTEE-EEEECC
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEE-EEeCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEeC
Confidence 4688888776663 45566777888888655 4455555 555544444 344445676 444444
Q ss_pred CCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc--------------CC
Q psy246 519 GKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ--------------RD 582 (615)
Q Consensus 519 G~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~--------------~d 582 (615)
.....+...+. .....||+.+-....+ +..++.+.+|+-.++.+++-.++.. ..
T Consensus 66 ~~~~~~~~~~~~~~~~~iPvV~i~~~~~~----------~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~ 135 (271)
T 2dri_A 66 TDSDAVGNAVKMANQANIPVITLDRQATK----------GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGT 135 (271)
T ss_dssp SSTTTTHHHHHHHHHTTCCEEEESSCCSS----------SCCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTC
T ss_pred CChHHHHHHHHHHHHCCCcEEEecCCCCC----------CceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 33333333332 2346788876322110 1123456666544433333222222 12
Q ss_pred HHHHHHHHHHHHHHHH
Q psy246 583 FFIWSKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~~kl~~~~~~~~~ 598 (615)
.....|++.|+..+.+
T Consensus 136 ~~~~~R~~Gf~~al~~ 151 (271)
T 2dri_A 136 SAARERGEGFQQAVAA 151 (271)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHhc
Confidence 3456777778776654
No 151
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=33.50 E-value=60 Score=27.74 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=22.2
Q ss_pred hhhhcCCCCEEEEEecCCCCC---c---hhhhcccCCCCeeccCCCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNG---L---GPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~---L---~gvva~~t~~PVI~vP~~~ 543 (615)
+.++..+++.|+++--|.++. + +.-|.-++.+||+-||+..
T Consensus 103 ~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~~~ 149 (150)
T 3tnj_A 103 RIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRLRD 149 (150)
T ss_dssp HHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEECCC
T ss_pred HHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeCCC
Confidence 334556788666666565431 2 2223456789999998753
No 152
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.90 E-value=3.3e+02 Score=25.89 Aligned_cols=128 Identities=12% Similarity=0.089 Sum_probs=68.6
Q ss_pred CCeEEEEeC----CCCC---HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEE
Q psy246 441 DNLVVLALG----SSSD---LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVV 513 (615)
Q Consensus 441 ~~~V~Ii~g----s~SD---~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V 513 (615)
...|++++. +.++ ..+.+.+...+++.|+... +...+. +++..++. +.+..++++-|
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~----~~~~~~~~-----------~~l~~~~vdGi 69 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLL-LIPDEP----GEKYQSLI-----------HLVETRRVDAL 69 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEE-EEEECT----TCCCHHHH-----------HHHHHTCCSEE
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEE-EEeCCC----hhhHHHHH-----------HHHHcCCCCEE
Confidence 457999987 4444 3456777888889998775 222221 11122222 33344577744
Q ss_pred EEEecCCCCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC----------
Q psy246 514 FIAVAGKSNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR---------- 581 (615)
Q Consensus 514 ~Ia~AG~~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~---------- 581 (615)
||.....+. ..+. .....||+.+-.... .++++++.+|+-..+.+++-.++...
T Consensus 70 Ii~~~~~~~---~~~~~l~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (294)
T 3qk7_A 70 IVAHTQPED---FRLQYLQKQNFPFLALGRSHL-----------PKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTD 135 (294)
T ss_dssp EECSCCSSC---HHHHHHHHTTCCEEEESCCCC-----------SSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred EEeCCCCCh---HHHHHHHhCCCCEEEECCCCC-----------CCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 444333322 2222 234678887643221 34567777776555544444444332
Q ss_pred --CHHHHHHHHHHHHHHHH
Q psy246 582 --DFFIWSKLRMYQTKLYI 598 (615)
Q Consensus 582 --d~~l~~kl~~~~~~~~~ 598 (615)
......|++.|+..+.+
T Consensus 136 ~~~~~~~~R~~Gf~~al~~ 154 (294)
T 3qk7_A 136 ARISYVDQRLQGYVQTMSE 154 (294)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 24566778888776543
No 153
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=32.19 E-value=1.8e+02 Score=29.12 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEec---cc--CCcchHHHHHHHH
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSA---NL--DNVARDEVQIMKR 492 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~sa---HR--~~~~p~~~~~~~~ 492 (615)
+++|++-|++|+|. +.++++||..- .|.-= .+ ..++++++.+..+
T Consensus 2 ki~IvtDSt~dl~~-----~~~~~~~I~vvPl~v~~~~~~y~D~~di~~~efy~~~~ 53 (280)
T 2dt8_A 2 RITLVTDSTSDLPQ-----DLRGRLGVRVVPLYVNLSGAIYRDWEEITPTEIFQKVR 53 (280)
T ss_dssp CEEEEEEGGGCCCH-----HHHTTTTCEEECCEEEETTEEEETTTTCCHHHHHHHHH
T ss_pred CEEEEEeCCCCCCH-----HHHHhCCeEEEEEEEEECCEEEecCCCCCHHHHHHHHH
Confidence 58999999999987 34688898765 33321 12 3578888887764
No 154
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=31.97 E-value=3.6e+02 Score=26.10 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=61.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCC
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSN 522 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~ 522 (615)
.+.++.|... . ++....++++|++.-.+.+.- +++.++. . .++ ++|.-+|
T Consensus 214 ~~l~i~G~~~-~---~~l~~~~~~~~~~~v~~~g~~------~~~~~~~-----------~-----~ad-~~v~~sg--- 263 (364)
T 1f0k_A 214 TIWHQSGKGS-Q---QSVEQAYAEAGQPQHKVTEFI------DDMAAAY-----------A-----WAD-VVVCRSG--- 263 (364)
T ss_dssp EEEEECCTTC-H---HHHHHHHHHTTCTTSEEESCC------SCHHHHH-----------H-----HCS-EEEECCC---
T ss_pred EEEEEcCCch-H---HHHHHHHhhcCCCceEEecch------hhHHHHH-----------H-----hCC-EEEECCc---
Confidence 4456666654 2 455555666776421443321 2344443 2 255 7887665
Q ss_pred CchhhhcccCCCCeeccCCCCC-chhh--hhhhhcCCCCceeeeecChhh--HHHHHHHHHccCCHHHHHHHHHHHH
Q psy246 523 GLGPVISGNTCYPVINCPPLDS-TGRD--VWSSLNLPAGIACSTVTAPSN--AALAAAQILAQRDFFIWSKLRMYQT 594 (615)
Q Consensus 523 ~L~gvva~~t~~PVI~vP~~~~-g~~~--l~S~lqmp~Gv~v~tv~~~~n--Aa~~A~~Il~~~d~~l~~kl~~~~~ 594 (615)
++.-+=|....+|||+.|.... +-.. .-.+++.-.|+ +-.+.+ +.-+|..|..+ |+..++++.....
T Consensus 264 ~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g~----~~~~~d~~~~~la~~i~~l-~~~~~~~~~~~~~ 335 (364)
T 1f0k_A 264 ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAK----IIEQPQLSVDAVANTLAGW-SRETLLTMAERAR 335 (364)
T ss_dssp HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEE----ECCGGGCCHHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCcEE----EeccccCCHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 2333335567899999986432 1100 01122221232 222334 66677788888 9998888765543
No 155
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=31.92 E-value=1.3e+02 Score=26.12 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=26.2
Q ss_pred CeEEEEeCCC---CCHHHHHHHHHHhhccCCC-ee
Q psy246 442 NLVVLALGSS---SDLPFANKIDDANHDPQWS-DE 472 (615)
Q Consensus 442 ~~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~-~~ 472 (615)
+.|.|.|-|+ ..=|++.++...|++.|++ ++
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~ 54 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYA 54 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCE
Confidence 4699998875 3578999999999999996 87
No 156
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.70 E-value=3.5e+02 Score=25.89 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=52.4
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++.+.++- .+.+.+.+.+++.|+... +...+. .+++-.+.+ +.+-.++++ .||..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~---~~~~~~~~i-----------~~~~~~~vd-giIi~ 66 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTD-LQYADD---DIPNQLSQI-----------ENMVTKGVK-VLVIA 66 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEE-EEECTT---CHHHHHHHH-----------HHHHHHTCS-EEEEC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEE-EeeCCC---CHHHHHHHH-----------HHHHHcCCC-EEEEE
Confidence 45799999887663 345667788889998764 455666 666665555 444445787 55554
Q ss_pred cCCCCCchhhhcc--cCCCCeeccCC
Q psy246 518 AGKSNGLGPVISG--NTCYPVINCPP 541 (615)
Q Consensus 518 AG~~~~L~gvva~--~t~~PVI~vP~ 541 (615)
.-........+.- ....|||.+-.
T Consensus 67 ~~~~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 67 SIDGTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp CSSGGGGHHHHHHHHHTTCEEEEESS
T ss_pred cCCchhHHHHHHHHHHCCCCEEEECC
Confidence 4433344444432 34688887654
No 157
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=31.57 E-value=15 Score=35.99 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=46.4
Q ss_pred CeEEEEeCCCCCH-----HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSSDL-----PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~-----~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
-+|+|++|+.|.. ..+..+..+|+..|+++..+- ... .+..+ . +. ...+.||++
T Consensus 4 m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~-~~~---~~~~~---~-----------~~---~~~D~v~~~ 62 (307)
T 3r5x_A 4 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPIT-LNE---KMDLI---E-----------KA---KDIDFALLA 62 (307)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEE-CSS---GGGHH---H-----------HT---TTCSEEEEC
T ss_pred cEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEc-ccC---chhHH---H-----------hc---cCCCEEEEe
Confidence 4799999998863 446677778888887664333 332 11111 1 11 357756666
Q ss_pred ecC---CCCCchhhhcccCCCCeeccCCCC
Q psy246 517 VAG---KSNGLGPVISGNTCYPVINCPPLD 543 (615)
Q Consensus 517 ~AG---~~~~L~gvva~~t~~PVI~vP~~~ 543 (615)
.-| ..+.+.+++. ...+|++|.++..
T Consensus 63 ~~~~~ge~~~~~~~le-~~gi~~~g~~~~~ 91 (307)
T 3r5x_A 63 LHGKYGEDGTVQGTLE-SLGIPYSGSNMLS 91 (307)
T ss_dssp CCSHHHHSSHHHHHHH-HHTCCBSSSCHHH
T ss_pred CCCCCCcHHHHHHHHH-HcCCCeeCcCHHH
Confidence 544 3334444443 3467888876544
No 158
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.25 E-value=1.2e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=25.2
Q ss_pred eEEEEeCCC---CCHHHHHHHHHHhhccCCCee
Q psy246 443 LVVLALGSS---SDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 443 ~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~~~ 472 (615)
.|.|.+.|+ +-=|.+.++...|++.|++++
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~ 50 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYE 50 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCE
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeE
Confidence 577887655 666899999999999999987
No 159
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=30.96 E-value=2.1e+02 Score=27.17 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=69.3
Q ss_pred CeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEe--cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEE
Q psy246 442 NLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILS--ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIA 516 (615)
Q Consensus 442 ~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~s--aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia 516 (615)
..|++++.+.++- .+.+.+...+++.|+.. .+++ .+. .++.-.+++ +.+..++++ -+|.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~-~~~~~~~~~---~~~~~~~~~-----------~~~~~~~vd-giIi 65 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSV-DIFASPSEG---DFQSQLQLF-----------EDLSNKNYK-GIAF 65 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCE-EEEECSSTT---CHHHHHHHH-----------HHHHTSSEE-EEEE
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEE-EEeCCCCCC---CHHHHHHHH-----------HHHHHcCCC-EEEE
Confidence 3688888776653 34556677888899665 4444 455 555554444 333445676 4444
Q ss_pred ecCCCCCchhhhcc--cCCCCeeccCCCCCchhhhhhhhcCCCCc-eeeeecChhhHHHHHHHHHcc-C-----------
Q psy246 517 VAGKSNGLGPVISG--NTCYPVINCPPLDSTGRDVWSSLNLPAGI-ACSTVTAPSNAALAAAQILAQ-R----------- 581 (615)
Q Consensus 517 ~AG~~~~L~gvva~--~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv-~v~tv~~~~nAa~~A~~Il~~-~----------- 581 (615)
.......+...+.. ....||+.+-....+.. .-+....+ +++.+|+-..+.+++-.++.. .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g 141 (288)
T 1gud_A 66 APLSSVNLVMPVARAWKKGIYLVNLDEKIDMDN----LKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEG 141 (288)
T ss_dssp CCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHH----HHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEEC
T ss_pred eCCChHHHHHHHHHHHHCCCeEEEECCCCCccc----ccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 44433333333322 24678887643221100 00000123 566666554444444333333 2
Q ss_pred ---CHHHHHHHHHHHHHHH
Q psy246 582 ---DFFIWSKLRMYQTKLY 597 (615)
Q Consensus 582 ---d~~l~~kl~~~~~~~~ 597 (615)
......|++.|+..+.
T Consensus 142 ~~~~~~~~~R~~Gf~~al~ 160 (288)
T 1gud_A 142 KAGNASGEARRNGATEAFK 160 (288)
T ss_dssp STTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHhHHHHHHHHHHH
Confidence 1234677777777654
No 160
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=30.86 E-value=51 Score=34.01 Aligned_cols=40 Identities=0% Similarity=0.062 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHH
Q psy246 450 SSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMK 491 (615)
Q Consensus 450 s~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~ 491 (615)
+.||.+.++++...+++.|+.+. .+..++| .+|+++.+++
T Consensus 115 ~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~--~~~e~~~~ia 155 (345)
T 1nvm_A 115 HCTEADVSKQHIEYARNLGMDTVGFLMMSHM--IPAEKLAEQG 155 (345)
T ss_dssp ETTCGGGGHHHHHHHHHHTCEEEEEEESTTS--SCHHHHHHHH
T ss_pred eccHHHHHHHHHHHHHHCCCEEEEEEEeCCC--CCHHHHHHHH
Confidence 44444445555555555555544 4444444 2344444444
No 161
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=30.30 E-value=78 Score=32.68 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCCCchhhhc-ccCCCCeecc
Q psy246 509 GKNVVFIAVAGKSNGLGPVIS-GNTCYPVINC 539 (615)
Q Consensus 509 ~~~~V~Ia~AG~~~~L~gvva-~~t~~PVI~v 539 (615)
.-+ ++++..+....+++.++ .....||+.+
T Consensus 111 kPD-vVi~~g~~~~~~~~~~aa~~~~IPv~h~ 141 (396)
T 3dzc_A 111 QPD-VVLVHGDTATTFAASLAAYYQQIPVGHV 141 (396)
T ss_dssp CCS-EEEEETTSHHHHHHHHHHHTTTCCEEEE
T ss_pred CCC-EEEEECCchhHHHHHHHHHHhCCCEEEE
Confidence 455 88888887777876554 4678899876
No 162
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=30.27 E-value=43 Score=33.26 Aligned_cols=89 Identities=6% Similarity=0.017 Sum_probs=49.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee----EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE----QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~----~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..|+|+=||-.-+.+.+++...+-.-.+-|- ++--.-| +.+++.+++ .++.+. .+..|++.++||+
T Consensus 13 ~~IGv~DsG~Ggltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~---s~~~i~~~~------~~~~~~-L~~~g~d~iviaC 82 (273)
T 2oho_A 13 RPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPR---PKKQIKEYT------WELVNF-LLTQNVKMIVFAC 82 (273)
T ss_dssp CCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTS---CHHHHHHHH------HHHHHH-HHTTTCSEEEECC
T ss_pred CcEEEEeCCCcHHHHHHHHHHHCCCCCEEEEeCCCCCCCCCC---CHHHHHHHH------HHHHHH-HHHCCCCEEEEeC
Confidence 3699993333348999999988643322111 1111124 666665543 344422 3456898666666
Q ss_pred cCCCCCchhhhcccCCCCeeccC
Q psy246 518 AGKSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP 540 (615)
-..++..-..+...+..||||+.
T Consensus 83 NTas~~~l~~lr~~~~iPvigi~ 105 (273)
T 2oho_A 83 NTATAVAWEEVKAALDIPVLGVV 105 (273)
T ss_dssp HHHHHHHHHHHHHHCSSCEEESH
T ss_pred chHhHHHHHHHHHhCCCCEEecc
Confidence 55543212345556789999963
No 163
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=29.94 E-value=2.1e+02 Score=27.44 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhh----
Q psy246 453 DLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPV---- 527 (615)
Q Consensus 453 D~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gv---- 527 (615)
.....+++...|+..|++++ .+..- . ..+.+. +.++..+++.++++.-|. +.+..+
T Consensus 212 ~~~~l~~~~~~l~~~~~~~~~~~~~g-~---~~~~I~--------------~~a~~~~~dLlV~G~~~~-~~~~~~~~Gs 272 (294)
T 3loq_A 212 KTADLRVMEEVIGAEGIEVHVHIESG-T---PHKAIL--------------AKREEINATTIFMGSRGA-GSVMTMILGS 272 (294)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECS-C---HHHHHH--------------HHHHHTTCSEEEEECCCC-SCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecC-C---HHHHHH--------------HHHHhcCcCEEEEeCCCC-CCccceeeCc
Confidence 56788889999999999987 55432 2 233333 444556788444444444 444443
Q ss_pred ----hcccCCCCeeccCCCC
Q psy246 528 ----ISGNTCYPVINCPPLD 543 (615)
Q Consensus 528 ----va~~t~~PVI~vP~~~ 543 (615)
+..++.+||+-||+..
T Consensus 273 ~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 273 TSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp HHHHHHHHCSSCEEEECSCT
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 2346789999999754
No 164
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=29.37 E-value=41 Score=30.32 Aligned_cols=81 Identities=10% Similarity=0.004 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhccccccceeccCcceeeee--cCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHH
Q psy246 59 ATKTNTLVFDILNASENVGDLLIEGKTKKIHL--LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136 (615)
Q Consensus 59 nn~iSs~iF~~L~~~evv~RniaaGs~kkry~--lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le 136 (615)
++.++.|+|-.+-+.|.-.+.++++...-.|. ...-+.+..++-+.|+..+.-.+++++.....+..++...+.+.|.
T Consensus 5 ~~~m~~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~ 84 (147)
T 3imi_A 5 NHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFN 84 (147)
T ss_dssp CCCGGGCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred hcccCCCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456678877766676667788877554441 2334688999999999888878888888888888888888877775
Q ss_pred hcc
Q psy246 137 AAE 139 (615)
Q Consensus 137 ~~g 139 (615)
..|
T Consensus 85 ~~~ 87 (147)
T 3imi_A 85 PVG 87 (147)
T ss_dssp CSE
T ss_pred CCC
Confidence 433
No 165
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=29.33 E-value=2.7e+02 Score=25.86 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=58.2
Q ss_pred EEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 444 VVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 444 V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
|++++.+.++- .+.+.+.+.+++.|+... +...+. .++...+++ +.+..++++ .+|.....
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI~~~~~ 65 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLA-LFPILS---LARLKRYLE-----------NTTLAYLTD-GLILASYD 65 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEE-ECCCCS---CCCCC--------------------CCCS-EEEEESCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEE-EEeCCC---chhhHHHHH-----------HHHHhCCCC-EEEEecCC
Confidence 67777665552 355667778888887653 333333 333222233 333345777 44444332
Q ss_pred CCCchhhhc--ccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC----------------C
Q psy246 521 SNGLGPVIS--GNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR----------------D 582 (615)
Q Consensus 521 ~~~L~gvva--~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~----------------d 582 (615)
... ..+. .....||+.+-... +. ++++..|+-..+..++-.++... .
T Consensus 66 ~~~--~~~~~~~~~~iPvV~~~~~~------------~~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~ 130 (276)
T 2h0a_A 66 LTE--RFEEGRLPTERPVVLVDAQN------------PR-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFR 130 (276)
T ss_dssp CC--------CCSCSSCEEEESSCC------------TT-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---
T ss_pred CCH--HHHHHHhhcCCCEEEEeccC------------CC-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCccccccc
Confidence 221 2222 12457887763221 12 56666676655544444443321 1
Q ss_pred HHHH-HHHHHHHHHHHH
Q psy246 583 FFIW-SKLRMYQTKLYI 598 (615)
Q Consensus 583 ~~l~-~kl~~~~~~~~~ 598 (615)
.... .|++.|+..+.+
T Consensus 131 ~~~~~~R~~gf~~~l~~ 147 (276)
T 2h0a_A 131 RTVFAERMAGFQEALKE 147 (276)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 2345 677777766543
No 166
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=28.61 E-value=1.1e+02 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.3
Q ss_pred CeEEEEeCCC---CCHHHHHHHHHHhhccCCCee
Q psy246 442 NLVVLALGSS---SDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 442 ~~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~~~ 472 (615)
+.|.|.+-|+ +-=|++.++...|++.|++++
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~ 48 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYE 48 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEE
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeE
Confidence 3577777754 555799999999999999997
No 167
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=28.37 E-value=84 Score=31.41 Aligned_cols=82 Identities=10% Similarity=0.115 Sum_probs=47.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
..+++.||... ++++...+-.+|.+-- .|....-....+..+... +-.++ +..+.+ +|++.+..
T Consensus 58 ~V~av~~G~~~----~~~~lr~ala~GaD~vi~v~d~~~~~~~~~~~a~~------La~~i----~~~~~d-lVl~G~~s 122 (264)
T 1o97_C 58 EVVVVSVGPDR----VDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRI------LTEVI----KKEAPD-MVFAGVQS 122 (264)
T ss_dssp EEEEEEESCGG----GHHHHHHHHHTTCSEEEEECCGGGTTCCHHHHHHH------HHHHH----HHHCCS-EEEEESCC
T ss_pred eEEEEEeCchh----HHHHHHHHHhcCCCEEEEEcCcccccCCHHHHHHH------HHHHH----HhcCCC-EEEEcCCc
Confidence 36778888744 3444433445698866 444322101144443322 22223 323576 77766644
Q ss_pred ----CCCchhhhcccCCCCeec
Q psy246 521 ----SNGLGPVISGNTCYPVIN 538 (615)
Q Consensus 521 ----~~~L~gvva~~t~~PVI~ 538 (615)
++.+++.+|+....|.+.
T Consensus 123 ~d~~~~~v~p~lA~~L~~~~vt 144 (264)
T 1o97_C 123 SDQAYASTGISVASYLNWPHAA 144 (264)
T ss_dssp TTTCCCCHHHHHHHHHTCCEEE
T ss_pred cCCchhhHHHHHHHHhCCCccc
Confidence 478999999999999874
No 168
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=28.18 E-value=1.1e+02 Score=26.90 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=35.4
Q ss_pred HHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchh-----h---
Q psy246 457 ANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGP-----V--- 527 (615)
Q Consensus 457 ~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~g-----v--- 527 (615)
.+++.+.++..|++++ ++.-.+. .|. ..++ +.++..+++.|+++.-|.+ .+.. +
T Consensus 80 l~~~~~~~~~~g~~~~~~~~v~~G---~~~--~~I~-----------~~a~~~~~DLIV~G~~g~~-~~~~~~lGSv~~~ 142 (155)
T 3dlo_A 80 LSWAVSIIRKEGAEGEEHLLVRGK---EPP--DDIV-----------DFADEVDAIAIVIGIRKRS-PTGKLIFGSVARD 142 (155)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSS---CHH--HHHH-----------HHHHHTTCSEEEEECCEEC-TTSCEECCHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEecCC---CHH--HHHH-----------HHHHHcCCCEEEECCCCCC-CCCCEEeccHHHH
Confidence 4455666677888887 4333333 332 2233 4445667885555555543 3322 2
Q ss_pred hcccCCCCeecc
Q psy246 528 ISGNTCYPVINC 539 (615)
Q Consensus 528 va~~t~~PVI~v 539 (615)
|.-++.+||+-|
T Consensus 143 vl~~a~~PVLvV 154 (155)
T 3dlo_A 143 VILKANKPVICI 154 (155)
T ss_dssp HHHHCSSCEEEE
T ss_pred HHHhCCCCEEEe
Confidence 334667887755
No 169
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=28.12 E-value=90 Score=30.14 Aligned_cols=75 Identities=8% Similarity=0.020 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchh---
Q psy246 451 SSDLPFANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGP--- 526 (615)
Q Consensus 451 ~SD~~~~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~g--- 526 (615)
..-....+++...+...|++++ .+...+. ..+.+. +.++.++++.|+++--|.+ .+..
T Consensus 47 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~---~~~~i~--------------~~a~~~~~dliV~G~~~~~-~~~~~~~ 108 (290)
T 3mt0_A 47 RDHSAALNDLAQELREEGYSVSTNQAWKDS---LHQTII--------------AEQQAEGCGLIIKQHFPDN-PLKKAIL 108 (290)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEEECSSS---HHHHHH--------------HHHHHHTCSEEEEECCCSC-TTSTTSC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEEeCCC---HHHHHH--------------HHHHhcCCCEEEEecccCC-chhhccc
Confidence 4456677888888888999988 5553332 223333 3345567886666655553 2322
Q ss_pred --h---hcccCCCCeeccCCCC
Q psy246 527 --V---ISGNTCYPVINCPPLD 543 (615)
Q Consensus 527 --v---va~~t~~PVI~vP~~~ 543 (615)
+ +.-++.+||+-||...
T Consensus 109 gs~~~~vl~~~~~PVlvv~~~~ 130 (290)
T 3mt0_A 109 TPDDWKLLRFAPCPVLMTKTAR 130 (290)
T ss_dssp CHHHHHHHHHCSSCEEEECCCS
T ss_pred CHHHHHHHhcCCCCEEEecCCC
Confidence 2 3346789999999543
No 170
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=27.61 E-value=1.6e+02 Score=25.80 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHhccccccceeccCcceeeee--cCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHh
Q psy246 64 TLVFDILNASENVGDLLIEGKTKKIHL--LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNA 137 (615)
Q Consensus 64 s~iF~~L~~~evv~RniaaGs~kkry~--lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~ 137 (615)
.|+|-.+-+.|.-.+.++++...-.|. ...-+++..++-+.|+..+.-.+++++.....+..++...+.+.|.-
T Consensus 6 ~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 81 (138)
T 3p0t_A 6 ASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRT 81 (138)
T ss_dssp HHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467765555566667788887655441 23346889999999999888788888888888888888888777653
No 171
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=26.16 E-value=66 Score=32.21 Aligned_cols=84 Identities=11% Similarity=-0.033 Sum_probs=52.9
Q ss_pred CeEEEEeCCCCC----HHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSD----LPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD----~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
.++.+|.-..|- ....+++...|+..|++++-+..- .+.+..+++ +++.. +.+ ++ .+
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~-----~~~~a~~~~-----------~~~~~-~~d-~v-v~ 69 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTK-----EQGDATKYC-----------QEFAS-KVD-LI-IV 69 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECC-----STTHHHHHH-----------HHHTT-TCS-EE-EE
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEcc-----CcchHHHHH-----------HHhhc-CCC-EE-EE
Confidence 356666544332 456788999999999988632222 345555555 44432 676 44 44
Q ss_pred cCCCCCchhhhccc----CCCCeeccCCCCC
Q psy246 518 AGKSNGLGPVISGN----TCYPVINCPPLDS 544 (615)
Q Consensus 518 AG~~~~L~gvva~~----t~~PVI~vP~~~~ 544 (615)
+|+.+.+--|+.++ +..|+-.+|.-++
T Consensus 70 ~GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt~ 100 (304)
T 3s40_A 70 FGGDGTVFECTNGLAPLEIRPTLAIIPGGTC 100 (304)
T ss_dssp EECHHHHHHHHHHHTTCSSCCEEEEEECSSC
T ss_pred EccchHHHHHHHHHhhCCCCCcEEEecCCcH
Confidence 57778888887765 4567777786553
No 172
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.65 E-value=2.2e+02 Score=26.71 Aligned_cols=119 Identities=18% Similarity=0.010 Sum_probs=59.8
Q ss_pred CCeEEEEeCCCCCHH---HHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhc-CCCCEEE
Q psy246 441 DNLVVLALGSSSDLP---FANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWS-SGKNVVF 514 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~---~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~-~~~~~V~ 514 (615)
..+|+++.|...+.. ..+...+++++.|++.. .+..... +++...+.+ .+.... ...+ .|
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~----------~~~l~~~~~~~-ai 196 (292)
T 3k4h_A 131 HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDF---SRESGQQAV----------EELMGLQQPPT-AI 196 (292)
T ss_dssp CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS---SHHHHHHHH----------HHHHTSSSCCS-EE
T ss_pred CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCC---CHHHHHHHH----------HHHHcCCCCCc-EE
Confidence 347999998876543 34556678888899875 3444333 555443332 122222 2455 77
Q ss_pred EEecCCCCCchhhhcccCCCCeeccCCCCC--chhhhhhhhcCCCCceeeee-cChhhHHHHHHHHH
Q psy246 515 IAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDVWSSLNLPAGIACSTV-TAPSNAALAAAQIL 578 (615)
Q Consensus 515 Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l~S~lqmp~Gv~v~tv-~~~~nAa~~A~~Il 578 (615)
++..+.. + .|++.+....- +.||-..+ |.|+....-.+.|+ ..|| .++..-|..|+++|
T Consensus 197 ~~~~d~~-a-~g~~~al~~~g-~~vP~di~vig~d~~~~~~~~~p~--lttv~~~~~~~g~~av~~l 258 (292)
T 3k4h_A 197 MATDDLI-G-LGVLSALSKKG-FVVPKDVSIVSFNNALLSEIASPP--LSTVDVNIYQLGYEAAKAL 258 (292)
T ss_dssp EESSHHH-H-HHHHHHHHHTT-CCTTTTCEEEEESCCHHHHHSSSC--CEEEECCHHHHHHHHHHHH
T ss_pred EEcChHH-H-HHHHHHHHHhC-CCCCCeEEEEEecCcchhhccCCC--ceEEecCHHHHHHHHHHHH
Confidence 7654421 2 24444332221 22343333 44443222223333 4555 35666666666655
No 173
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=25.56 E-value=1.2e+02 Score=30.60 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=30.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEe--c-c-c--CCcchHHHHHHHH
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILS--A-N-L--DNVARDEVQIMKR 492 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~s--a-H-R--~~~~p~~~~~~~~ 492 (615)
.+++|++-|++|+|. +.++++||..- .|.- - + + ..++++++.+..+
T Consensus 3 ~ki~IvtDSt~dl~~-----e~~~~~~I~vvPl~v~~~~~~y~~D~~di~~~efy~~~~ 56 (297)
T 3nyi_A 3 AMYKIVSDSACDLSK-----EYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMV 56 (297)
T ss_dssp -CCEEEEEGGGCCCH-----HHHHHHTEEEECCEEESSSSCEEEBTTTBCHHHHHHHHH
T ss_pred CCEEEEEecCCCCCH-----HHHHhCCeEEEEEEEEECCEEEecCCCCCCHHHHHHHHH
Confidence 369999999999994 34556777654 3321 1 1 2 3678888877763
No 174
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=25.54 E-value=49 Score=33.24 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=51.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee----EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE----QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~----~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..|+|+=++-..+.+.+++...+-.-.+-|- ++----+ +.+++.++. .+++ +..+..|++.++||+
T Consensus 23 ~~IGvfDsG~Ggltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~---s~~~i~~~~------~~~~-~~L~~~g~d~IVIaC 92 (286)
T 2jfq_A 23 KPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPR---PGEQVKQYT------VEIA-RKLMEFDIKMLVIAC 92 (286)
T ss_dssp SCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTS---CHHHHHHHH------HHHH-HHHTTSCCSEEEECC
T ss_pred CcEEEEeCCCCcHHHHHHHHHHCCCccEEEeccCCCCCcCCC---CHHHHHHHH------HHHH-HHHHHCCCCEEEEeC
Confidence 3699994444489999999887632211110 1111224 666665544 3333 223446899777777
Q ss_pred cCCCC-CchhhhcccCCCCeeccC
Q psy246 518 AGKSN-GLGPVISGNTCYPVINCP 540 (615)
Q Consensus 518 AG~~~-~L~gvva~~t~~PVI~vP 540 (615)
-..++ ++. .+...+..||||+.
T Consensus 93 NTas~~~l~-~lr~~~~iPVigi~ 115 (286)
T 2jfq_A 93 NTATAVALE-YLQKTLSISVIGVI 115 (286)
T ss_dssp HHHHHHHHH-HHHHHCSSEEEESH
T ss_pred CchhHHHHH-HHHHhCCCCEEecc
Confidence 66654 344 44455689999964
No 175
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=25.33 E-value=1.6e+02 Score=29.36 Aligned_cols=80 Identities=9% Similarity=0.071 Sum_probs=48.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEE-e----cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QIL-S----ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~-s----aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
..+++.+|... ++++...+-.+|.+-- .|. . +|- .+..+...+ -.++ +..+.+ +|+
T Consensus 60 ~V~av~~G~~~----a~~~lr~ala~GaD~vi~v~~d~~~~~~~---~~~~~A~~L------a~~i----~~~~~d-lVl 121 (255)
T 1efv_B 60 EVIAVSCGPAQ----CQETIRTALAMGADRGIHVEVPPAEAERL---GPLQVARVL------AKLA----EKEKVD-LVL 121 (255)
T ss_dssp EEEEEEEESTT----HHHHHHHHHHHTCSEEEEEECCHHHHTTC---CHHHHHHHH------HHHH----HHHTCS-EEE
T ss_pred eEEEEEeCChh----HHHHHHHHHhcCCCEEEEEecChhhcccC---CHHHHHHHH------HHHH----HhcCCC-EEE
Confidence 35777888644 3444444445698876 444 2 244 455443332 2233 223567 666
Q ss_pred EecCC----CCCchhhhcccCCCCeecc
Q psy246 516 AVAGK----SNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 516 a~AG~----~~~L~gvva~~t~~PVI~v 539 (615)
+.+.. ++.+++.+|+....|.+.-
T Consensus 122 ~G~~s~d~d~~~v~p~lA~~L~~~~vt~ 149 (255)
T 1efv_B 122 LGKQAIDDDCNQTGQMTAGFLDWPQGTF 149 (255)
T ss_dssp EESCCTTTCCCCHHHHHHHHHTCCEEEE
T ss_pred EeCcccCCchhhHHHHHHHHhCCCcccc
Confidence 66544 4889999999999998843
No 176
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=25.24 E-value=1.9e+02 Score=25.80 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=24.8
Q ss_pred eEEEEeCCC---CCHHHHHHHHHHhhccCCCee
Q psy246 443 LVVLALGSS---SDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 443 ~V~Ii~gs~---SD~~~~~~~~~~l~~~gi~~~ 472 (615)
.|.|.+-|+ .-=|++.++...|++.|++++
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~ 68 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFA 68 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCE
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceE
Confidence 588887654 345799999999999999997
No 177
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.82 E-value=4.9e+02 Score=25.35 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=66.6
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
...|++++.+.++- .+.+.+.+.+++.|+... +...+ .++.-.+++ +.+..++++-+|+..
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~----~~~~~~~~~-----------~~l~~~~vdGiIi~~ 127 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQML-VAEAN----SVQAQDVVM-----------ESLISIQAAGIIHVP 127 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEE-EEECC----SHHHHHHHH-----------HHHHHHTCSEEEECC
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEE-EECCC----ChHHHHHHH-----------HHHHhCCCCEEEEcc
Confidence 45899999887773 456777888888887664 33332 233333333 333345677344432
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHcc------------CCHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQ------------RDFFI 585 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~------------~d~~l 585 (615)
. +.- ......||+.+-.... .++++++.+|+-..+..++-.++.. .....
T Consensus 128 -~----~~~--~~~~~iPvV~~~~~~~-----------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~ 189 (333)
T 3jvd_A 128 -V----VGS--IAPEGIPMVQLTRGEL-----------GPGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTT 189 (333)
T ss_dssp -C----TTC--CC-CCSCEEEECC---------------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHH
T ss_pred -h----HHH--HhhCCCCEEEECccCC-----------CCCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccH
Confidence 2 111 1234677776543221 2456677777655444444333332 22456
Q ss_pred HHHHHHHHHHHHH
Q psy246 586 WSKLRMYQTKLYI 598 (615)
Q Consensus 586 ~~kl~~~~~~~~~ 598 (615)
..|++.|+..+.+
T Consensus 190 ~~R~~Gf~~al~~ 202 (333)
T 3jvd_A 190 QERMRGISHAASI 202 (333)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6778877766543
No 178
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=24.50 E-value=1.3e+02 Score=23.90 Aligned_cols=20 Identities=5% Similarity=-0.217 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHhhccCCCee
Q psy246 453 DLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 453 D~~~~~~~~~~l~~~gi~~~ 472 (615)
-=|++.+|...|++.|++++
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~ 32 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFE 32 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEE
T ss_pred cCccHHHHHHHHHHcCCCEE
Confidence 45899999999999999998
No 179
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.33 E-value=65 Score=31.70 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=46.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCc-----chHHHHHHHHhhHHHHHHHHhhhhcCCCCEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNV-----ARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~-----~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~ 514 (615)
++|+|++-... + .....+.++++|.... .|.+.-- .+ .+++..+ .+.+...+..+..|++.||
T Consensus 110 ~rigVlaT~~t-~--~~~~~~~l~~~g~~~~~~~v~~~~~-~~~~l~~~~~~~~~------~l~~~~~~~~~~~gad~IV 179 (245)
T 3qvl_A 110 TRFSIVTTLPR-T--LIIARHLLHQYGFHQHCAALHAIDL-PVLALEDGSGLAQE------KVRERCIRALKEDGSGAIV 179 (245)
T ss_dssp SCEEEEESCGG-G--HHHHHHHHHHHTCGGGEEEEEECCS-CGGGGGSSSSHHHH------HHHHHHHHHHHHSCCSEEE
T ss_pred CEEEEEEcchh-H--HHHHHHHHHHcCCCCeEEEEeCCCC-CHHHHcCCcHHHHH------HHHHHHHHHHHhcCCCEEE
Confidence 47988876654 2 2556667788888764 3333211 00 2222221 1223333334446899899
Q ss_pred EEecCCCCCchhhhcccCCCCee
Q psy246 515 IAVAGKSNGLGPVISGNTCYPVI 537 (615)
Q Consensus 515 Ia~AG~~~~L~gvva~~t~~PVI 537 (615)
.+++++. .|...+......|||
T Consensus 180 LGCTh~p-~l~~~i~~~~gVpvI 201 (245)
T 3qvl_A 180 LGSGGMA-TLAQQLTRELRVPVI 201 (245)
T ss_dssp ECCGGGG-GGHHHHHHHHTSCEE
T ss_pred ECCCChH-HHHHHHHHHcCCeEE
Confidence 9998885 555555544434444
No 180
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.29 E-value=73 Score=31.33 Aligned_cols=50 Identities=22% Similarity=0.110 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeecc
Q psy246 487 VQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~v 539 (615)
..++...+..+.+.+.+ .+..|++.|+||+-+.. +| ..+-...+.||||+
T Consensus 48 ~~d~~~a~~~l~~~~~~-l~~~g~d~iviaCnt~~-~l-~~lr~~~~iPvigi 97 (245)
T 3qvl_A 48 HFDEAIAAVGVLEQIRA-GREQGVDGHVIASFGDP-GL-LAARELAQGPVIGI 97 (245)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTCSEEEEC-CCCT-TH-HHHHHHCSSCEEEH
T ss_pred hhHHHHHHHHHHHHHHH-HHHCCCCEEEEeCCChh-HH-HHHHHHcCCCEECc
Confidence 34444455666777644 34568987777776543 45 55666789999997
No 181
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.05 E-value=1.4e+02 Score=29.54 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=19.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCC
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWS 470 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~ 470 (615)
.++|+||||+++- +...++..|-+-|..
T Consensus 8 ~gKvalVTGas~G--IG~aia~~la~~Ga~ 35 (255)
T 4g81_D 8 TGKTALVTGSARG--LGFAYAEGLAAAGAR 35 (255)
T ss_dssp TTCEEEETTCSSH--HHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCcH--HHHHHHHHHHHCCCE
Confidence 4678888888874 455566666666653
No 182
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=23.87 E-value=1.3e+02 Score=29.87 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=48.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee-EEE-e----cccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE-QIL-S----ANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~-~V~-s----aHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
..+++.||... ++++...+-.+|.+-- .|. . +|- .+..+...+ -.++ +..+.+ +|+
T Consensus 57 ~V~av~~G~~~----a~~~lr~ala~GaD~vi~v~~d~~~~~~~---~~~~~a~~L------a~~i----~~~~~d-lVl 118 (252)
T 1efp_B 57 EIIAVSIGVKQ----AAETLRTALAMGADRAILVVAADDVQQDI---EPLAVAKIL------AAVA----RAEGTE-LII 118 (252)
T ss_dssp EEEEEEEESGG----GHHHHHHHHHHTCSEEEEEECCSSTTCCC---CHHHHHHHH------HHHH----HHHTCS-EEE
T ss_pred eEEEEEeCChh----HHHHHHHHHhcCCCEEEEEecChhhcccC---CHHHHHHHH------HHHH----HhcCCC-EEE
Confidence 35778888744 3333333345699876 554 2 243 555544332 2223 223577 677
Q ss_pred EecCC----CCCchhhhcccCCCCeecc
Q psy246 516 AVAGK----SNGLGPVISGNTCYPVINC 539 (615)
Q Consensus 516 a~AG~----~~~L~gvva~~t~~PVI~v 539 (615)
+.+.. ++.+++.+|+....|.+.-
T Consensus 119 ~G~~s~d~~~~~v~p~lA~~L~~~~vt~ 146 (252)
T 1efp_B 119 AGKQAIDNDMNATGQMLAAILGWAQATF 146 (252)
T ss_dssp EESCCTTTCCCCHHHHHHHHHTCEEEEE
T ss_pred EcCCccCCchhhHHHHHHHHhCCCcccc
Confidence 66644 4789999999999998843
No 183
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=23.43 E-value=4.9e+02 Score=26.11 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCCCchhhhcccCCCCeeccCCCCC--chhhh--hhhhcCCCCceeeeecChhhHHHHHHHHHcc-CCHH
Q psy246 510 KNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDS--TGRDV--WSSLNLPAGIACSTVTAPSNAALAAAQILAQ-RDFF 584 (615)
Q Consensus 510 ~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~~~~--g~~~l--~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~-~d~~ 584 (615)
++ ++|+=||. +.+.= +...-+|+|-+|.+.+ +-... -.+. -.|.++.--....++.-++..|..+ .|++
T Consensus 253 aD-lvI~raG~-~Tv~E--~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~--~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~ 326 (365)
T 3s2u_A 253 AD-LVICRAGA-LTVSE--LTAAGLPAFLVPLPHAIDDHQTRNAEFLV--RSGAGRLLPQKSTGAAELAAQLSEVLMHPE 326 (365)
T ss_dssp CS-EEEECCCH-HHHHH--HHHHTCCEEECC-----CCHHHHHHHHHH--TTTSEEECCTTTCCHHHHHHHHHHHHHCTH
T ss_pred ce-EEEecCCc-chHHH--HHHhCCCeEEeccCCCCCcHHHHHHHHHH--HCCCEEEeecCCCCHHHHHHHHHHHHCCHH
Confidence 55 88876662 22222 2345789999997653 21111 1111 3454443333444566666666653 5776
Q ss_pred HHHHHHHH
Q psy246 585 IWSKLRMY 592 (615)
Q Consensus 585 l~~kl~~~ 592 (615)
.++++...
T Consensus 327 ~~~~m~~~ 334 (365)
T 3s2u_A 327 TLRSMADQ 334 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 184
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=23.41 E-value=1.1e+02 Score=25.67 Aligned_cols=36 Identities=8% Similarity=-0.119 Sum_probs=22.0
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP 540 (615)
+.++..+++.|+++--|. ..+.-|.-++.+||+-||
T Consensus 103 ~~a~~~~~dliV~G~~g~--sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 103 KFVEGKGYELVVWACYPS--AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHTTSCCSEEEECSCCG--GGTHHHHHHSSSEEEECC
T ss_pred HHHHhcCCCEEEEeCCCC--chHHHHHHhCCCceEeeC
Confidence 444556788555554454 344445567788888776
No 185
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=23.22 E-value=1.4e+02 Score=27.42 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=57.3
Q ss_pred HHHHHHHhccccccceeccCcceeeee--cCCCCCCCeEEeccccccCCccCccchhhHHHHHHHHHHHHHHHHHhcc
Q psy246 64 TLVFDILNASENVGDLLIEGKTKKIHL--LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAE 139 (615)
Q Consensus 64 s~iF~~L~~~evv~RniaaGs~kkry~--lKdD~~~dpli~~D~i~A~d~a~~~eI~~k~el~~kin~~lfe~le~~g 139 (615)
.|+|-.+-+.|.-.+.++++...-.|. ...-+++..++-+.|+..+.-.+++++.....+..++...+.+.|...|
T Consensus 29 ~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g 106 (161)
T 3lb5_A 29 NNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADG 106 (161)
T ss_dssp TSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCcccccccCCCCccEEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 577777666666667788877654441 2335788999999999988888888888888888888888887776444
No 186
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=23.14 E-value=5.2e+02 Score=24.99 Aligned_cols=125 Identities=9% Similarity=-0.003 Sum_probs=68.3
Q ss_pred CCeEEEEeCCCCCH---HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 441 DNLVVLALGSSSDL---PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~---~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..+|++++...++- .+.+.+...+++.|+... +...+. .++...+++ +.+..++++ -+| .
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~---~~~~~~~~~-----------~~l~~~~vd-giI-~ 122 (330)
T 3ctp_A 60 SKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLF-LCNTDD---DKEKEKTYL-----------EVLQSHRVA-GII-A 122 (330)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-EEECTT---CHHHHHHHH-----------HHHHHTTCS-EEE-E
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEE-EEeCCC---ChHHHHHHH-----------HHHHhCCCC-EEE-E
Confidence 45899999776553 355677777888887653 445555 565555554 444446787 555 4
Q ss_pred cCCCCCchhhhcccCCCCeeccCCCCCchhhhhhhhcCCCCceeeeecChhhHHHHHHHHHccC------------CHHH
Q psy246 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQR------------DFFI 585 (615)
Q Consensus 518 AG~~~~L~gvva~~t~~PVI~vP~~~~g~~~l~S~lqmp~Gv~v~tv~~~~nAa~~A~~Il~~~------------d~~l 585 (615)
...... ..+. ....||+.+-.... . +++++..|+-..+..++-.++... ....
T Consensus 123 ~~~~~~--~~l~-~~~iPvV~~~~~~~-----------~-~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~ 187 (330)
T 3ctp_A 123 SRSQCE--DEYA-NIDIPVVAFENHIL-----------D-NIITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEAT 187 (330)
T ss_dssp ETCCCS--GGGT-TCCSCEEEESSCCC-----------T-TSCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHH
T ss_pred CCCCCH--HHHH-hcCCCEEEEeccCC-----------C-CCCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccH
Confidence 332221 2222 34678876532211 1 455666665544443333333321 2345
Q ss_pred HHHHHHHHHHHH
Q psy246 586 WSKLRMYQTKLY 597 (615)
Q Consensus 586 ~~kl~~~~~~~~ 597 (615)
..|+..|+..+.
T Consensus 188 ~~R~~Gf~~al~ 199 (330)
T 3ctp_A 188 ELRYKGFLDGAR 199 (330)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777776554
No 187
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=23.08 E-value=3.2e+02 Score=22.54 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=24.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHhhccCCCee
Q psy246 441 DNLVVLALGSSSDLPFANKIDDANHDPQWSDE 472 (615)
Q Consensus 441 ~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~ 472 (615)
...|.|.+.+. =|.+.++...|++.|++++
T Consensus 15 ~~~v~vy~~~~--Cp~C~~ak~~L~~~~i~y~ 44 (99)
T 3qmx_A 15 SAKIEIYTWST--CPFCMRALALLKRKGVEFQ 44 (99)
T ss_dssp CCCEEEEECTT--CHHHHHHHHHHHHHTCCCE
T ss_pred CCCEEEEEcCC--ChhHHHHHHHHHHCCCCCE
Confidence 45677776554 5999999999999999998
No 188
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=23.00 E-value=1.3e+02 Score=29.12 Aligned_cols=70 Identities=6% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHhhccCCCee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCCCC----chhh---h
Q psy246 457 ANKIDDANHDPQWSDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNG----LGPV---I 528 (615)
Q Consensus 457 ~~~~~~~l~~~gi~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~~~----L~gv---v 528 (615)
.+++...+...|++++ .+..... ..+.+. +.++..+++.|+++.-|.++. ++++ +
T Consensus 75 l~~~~~~~~~~~v~~~~~~~~~g~---~~~~i~--------------~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~v 137 (319)
T 3olq_A 75 IKQQARYYLEAGIQIDIKVIWHNR---PYEAII--------------EEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQL 137 (319)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSC---HHHHHH--------------HHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHH
T ss_pred HHHHHHHHhhcCCeEEEEEEecCC---hHHHHH--------------HHHHhcCCCEEEEecCcCchhhcccccccHHHH
Confidence 4445555567788888 4442333 223333 334445688677776665421 2222 3
Q ss_pred cccCCCCeeccCCCC
Q psy246 529 SGNTCYPVINCPPLD 543 (615)
Q Consensus 529 a~~t~~PVI~vP~~~ 543 (615)
.-++.+||+-||...
T Consensus 138 l~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 138 LRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHCSSCEEEEESSC
T ss_pred HhcCCCCEEEecCcc
Confidence 456789999998643
No 189
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=22.76 E-value=45 Score=32.99 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=50.4
Q ss_pred hhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhc-cCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHH
Q psy246 424 LNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHD-PQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502 (615)
Q Consensus 424 enY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~-~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~ 502 (615)
+.|.++++.+... +.-.|+.|+.+|.+.++++...+.. .+-+...+++ .. +..++..++
T Consensus 200 ~~~~~l~~~L~~~-----~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g-~~---sl~e~~ali----------- 259 (348)
T 1psw_A 200 YHYAELAKQLIDE-----GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAG-ET---QLDQAVILI----------- 259 (348)
T ss_dssp HHHHHHHHHHHHT-----TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTT-TS---CHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHC-----CCeEEEEeChhhHHHHHHHHHhhhhccccceEeccC-cC---CHHHHHHHH-----------
Confidence 4777888777531 2334567999998777666543211 0011111111 22 566666665
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccCC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPP 541 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP~ 541 (615)
+ .++ ++|+.-.+..|| |+....|+|++--
T Consensus 260 ~-----~a~-l~I~~Dsg~~Hl----Aaa~g~P~v~lfg 288 (348)
T 1psw_A 260 A-----ACK-AIVTNDSGLMHV----AAALNRPLVALYG 288 (348)
T ss_dssp H-----TSS-EEEEESSHHHHH----HHHTTCCEEEEES
T ss_pred H-----hCC-EEEecCCHHHHH----HHHcCCCEEEEEC
Confidence 3 366 899886555666 4557889888743
No 190
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=22.44 E-value=73 Score=31.68 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=51.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee----EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhc-CCCCEEEEEe
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE----QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWS-SGKNVVFIAV 517 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~----~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~-~~~~~V~Ia~ 517 (615)
.|+|+=.|---+.+++++...+-.-.+-|- ++---.| +++++.++. .++++. .+. .|++.|+||+
T Consensus 5 ~IgvfDSGvGGltv~~~i~~~lP~~~~iy~~D~~~~PyG~~---s~~~i~~~~------~~~~~~-L~~~~g~d~iViAC 74 (272)
T 1zuw_A 5 PIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPR---PEEEVLQYT------WELTNY-LLENHHIKMLVIAC 74 (272)
T ss_dssp CEEEEESSSTTHHHHHHHHHHSTTCCEEEEECGGGCCCSSS---CHHHHHHHH------HHHHHH-HHHHSCCSEEEECC
T ss_pred eEEEEeCCcchHHHHHHHHHhCCCCcEEEeccCCCCCCCCC---CHHHHHHHH------HHHHHH-HHhhcCCCEEEEeC
Confidence 599996666678999999888743322111 1111224 677766554 333322 234 6899777777
Q ss_pred cCCCC-CchhhhcccCCCCeecc
Q psy246 518 AGKSN-GLGPVISGNTCYPVINC 539 (615)
Q Consensus 518 AG~~~-~L~gvva~~t~~PVI~v 539 (615)
-..++ +|. .+......||||+
T Consensus 75 NTas~~~l~-~lr~~~~iPVigi 96 (272)
T 1zuw_A 75 NTATAIALD-DIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEES
T ss_pred chhhHHHHH-HHHHHCCCCEEcc
Confidence 76664 344 4445568999995
No 191
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.17 E-value=1.9e+02 Score=24.63 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=28.1
Q ss_pred CeEEEEeCC---CCCHHHHHHHHHHhhccCCCee-EEEeccc
Q psy246 442 NLVVLALGS---SSDLPFANKIDDANHDPQWSDE-QILSANL 479 (615)
Q Consensus 442 ~~V~Ii~gs---~SD~~~~~~~~~~l~~~gi~~~-~V~saHR 479 (615)
-+|.+++|+ +| =.++++.+.+++.|++++ ..+|.+-
T Consensus 5 mkIlvvC~~G~~TS--ll~~kl~~~~~~~gi~~~i~~~~~~~ 44 (109)
T 2l2q_A 5 MNILLVCGAGMSTS--MLVQRIEKYAKSKNINATIEAIAETR 44 (109)
T ss_dssp EEEEEESSSSCSSC--HHHHHHHHHHHHHTCSEEEEEECSTT
T ss_pred eEEEEECCChHhHH--HHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 358888774 66 566799999999999987 7777765
No 192
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=21.89 E-value=89 Score=26.34 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=19.0
Q ss_pred hhhhcCCCCEEEEEecCCCCCchhh--------hcccCCCCeeccC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNGLGPV--------ISGNTCYPVINCP 540 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~L~gv--------va~~t~~PVI~vP 540 (615)
+.++..+++.|+++ +.+ +.+... +.-++.+||+-||
T Consensus 100 ~~a~~~~~dliV~G-~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 100 ALAKSLPADLVIIA-SHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHTTCSEEEEE-SSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHhCCCEEEEe-CCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 34455678844444 433 333222 2346678888776
No 193
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.80 E-value=1.3e+02 Score=29.02 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCC---HHHHHHHHHHhhccCC----Cee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCE
Q psy246 441 DNLVVLALGSSSD---LPFANKIDDANHDPQW----SDE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNV 512 (615)
Q Consensus 441 ~~~V~Ii~gs~SD---~~~~~~~~~~l~~~gi----~~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 512 (615)
..+|+|+. +.++ -.+++.+.+.|++.|. ... -++..+. .+++..+++ +.+..++++
T Consensus 8 t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~---~~~~~~~~~-----------~~l~~~~vD- 71 (302)
T 2qh8_A 8 TAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQG---NPAIAVQIA-----------RQFVGENPD- 71 (302)
T ss_dssp CEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTT---CHHHHHHHH-----------HHHHHTCCS-
T ss_pred CcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCC---CHHHHHHHH-----------HHHHhCCCC-
Confidence 45788884 4444 2355677788888888 655 6678888 888877776 555566788
Q ss_pred EEEEecCCCCCchhhhcccCCCCeeccC
Q psy246 513 VFIAVAGKSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 513 V~Ia~AG~~~~L~gvva~~t~~PVI~vP 540 (615)
.||+.... +...+.......||+.|-
T Consensus 72 gII~~~~~--~~~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 72 VLVGIATP--TAQALVSATKTIPIVFTA 97 (302)
T ss_dssp EEEEESHH--HHHHHHHHCSSSCEEEEE
T ss_pred EEEECChH--HHHHHHhcCCCcCEEEEe
Confidence 66655321 111222235678988763
No 194
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=21.73 E-value=3.7e+02 Score=24.70 Aligned_cols=84 Identities=10% Similarity=-0.029 Sum_probs=46.4
Q ss_pred CCeEEEEeCCCC-----CHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEE
Q psy246 441 DNLVVLALGSSS-----DLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515 (615)
Q Consensus 441 ~~~V~Ii~gs~S-----D~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~I 515 (615)
..+|+||+=|+. |.. ..-+...|+++|+......-+-- .++.+.+.+ .+..+..+++ +||
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n-~~~l~~~L~~~G~~v~~~~iv~D---d~~~i~~~l----------~~a~~~~~~D-lVi 74 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTS-GHYLRDSAQEAGHHVVDKAIVKE---NRYAIRAQV----------SAWIASDDVQ-VVL 74 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHH-HHHHHHHHHHTTCEEEEEEEECS---CHHHHHHHH----------HHHHHSSSCC-EEE
T ss_pred CCEEEEEEEeCCCCcccCcc-HHHHHHHHHHCCCeEeEEEEeCC---CHHHHHHHH----------HHHHhcCCCC-EEE
Confidence 457888874433 332 23367778899997762221111 344554433 2322322577 778
Q ss_pred EecCCCC----CchhhhcccCCCCeecc
Q psy246 516 AVAGKSN----GLGPVISGNTCYPVINC 539 (615)
Q Consensus 516 a~AG~~~----~L~gvva~~t~~PVI~v 539 (615)
+..|.+- ..+-+++.....++.|.
T Consensus 75 ttGG~g~~~~D~t~ea~~~~~~~~l~g~ 102 (172)
T 1mkz_A 75 ITGGTGLTEGDQAPEALLPLFDREVEGF 102 (172)
T ss_dssp EESCCSSSTTCCHHHHHGGGCSEECHHH
T ss_pred eCCCCCCCCCCCHHHHHHHHhcccCCcc
Confidence 7777654 45667776666555553
No 195
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=21.70 E-value=63 Score=32.48 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHhhccCCCee----EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEec
Q psy246 443 LVVLALGSSSDLPFANKIDDANHDPQWSDE----QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVA 518 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~----~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~A 518 (615)
.|+|+=|+-.-+.+.+++...+-.-.+-|- ++----+ +.+++.++. ....+.| +..|++.|+||+-
T Consensus 26 ~IGvfDsG~Ggltv~~~i~~~~P~~~~iy~~D~~~~pyG~~---s~~~i~~~~---~~~~~~L----~~~g~d~IVIACN 95 (290)
T 2vvt_A 26 AIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPR---PAEQVVQFT---WEMADFL----LKKRIKMLVIACN 95 (290)
T ss_dssp CEEEEESSSTTHHHHHHHHHHCTTSCEEEEECTTTCCCTTS---CHHHHHHHH---HHHHHHH----HTTTCSEEEECCH
T ss_pred cEEEEeCCCcHHHHHHHHHHHCCCccEEEecccccCCCCCC---CHHHHHHHH---HHHHHHH----HHCCCCEEEEeCc
Confidence 599993334448899999988743221110 1111123 566665543 2223333 3458996666666
Q ss_pred CCCC-CchhhhcccCCCCeeccC
Q psy246 519 GKSN-GLGPVISGNTCYPVINCP 540 (615)
Q Consensus 519 G~~~-~L~gvva~~t~~PVI~vP 540 (615)
..++ ++. .+......||||+.
T Consensus 96 Tas~~~l~-~lr~~~~iPVigii 117 (290)
T 2vvt_A 96 TATAVALE-EIKAALPIPVVGVI 117 (290)
T ss_dssp HHHHHHHH-HHHHHCSSCEEESS
T ss_pred chhHHHHH-HHHHhCCCCEEccc
Confidence 5543 244 34455689999964
No 196
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=21.32 E-value=1.5e+02 Score=29.19 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=54.8
Q ss_pred CCeEEEEe-CCCCCHHHH-HHHHHHhhccCCC----ee-EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEE
Q psy246 441 DNLVVLAL-GSSSDLPFA-NKIDDANHDPQWS----DE-QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVV 513 (615)
Q Consensus 441 ~~~V~Ii~-gs~SD~~~~-~~~~~~l~~~gi~----~~-~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V 513 (615)
..+|+|+- -...-+.-+ +...+.|++.|.. .+ .+.+|.. .+.....++ +.+...+.+ +
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~g---d~~~~~~~~-----------~~l~~~~~D-l 72 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQG---NPAIAVQIA-----------RQFVGENPD-V 72 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTT---CHHHHHHHH-----------HHHHTTCCS-E
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCC---CHHHHHHHH-----------HHHHhcCCc-E
Confidence 34788773 122223333 3467788887753 55 7888998 888888887 666667888 8
Q ss_pred EEEecCCCCCchhhhcccCCCCeeccCC
Q psy246 514 FIAVAGKSNGLGPVISGNTCYPVINCPP 541 (615)
Q Consensus 514 ~Ia~AG~~~~L~gvva~~t~~PVI~vP~ 541 (615)
||+++.- +.-.+.......||+-+-+
T Consensus 73 Iiai~t~--aa~a~~~~~~~iPVVf~~v 98 (302)
T 3lkv_A 73 LVGIATP--TAQALVSATKTIPIVFTAV 98 (302)
T ss_dssp EEEESHH--HHHHHHHHCSSSCEEEEEE
T ss_pred EEEcCCH--HHHHHHhhcCCCCeEEEec
Confidence 8887543 2334555667889987644
No 197
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=21.19 E-value=1.3e+02 Score=31.14 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=47.5
Q ss_pred eEEEEeCCCCCHHHHHHHHH-HhhccCCC-eeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCC
Q psy246 443 LVVLALGSSSDLPFANKIDD-ANHDPQWS-DEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520 (615)
Q Consensus 443 ~V~Ii~gs~SD~~~~~~~~~-~l~~~gi~-~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~ 520 (615)
.+.|+||..-|. ...+ .++.|||+ .+.-.+... -+. ...+.++...+-++|.+ ..-+ ++++..+.
T Consensus 38 ~~~~~tgqh~~~----~~~~~~~~~~~i~~~~~~l~~~~--~~~--~~~~~~~~~~l~~~l~~----~kPD-~Vlv~gd~ 104 (385)
T 4hwg_A 38 HILVHTGQNYAY----ELNQVFFDDMGIRKPDYFLEVAA--DNT--AKSIGLVIEKVDEVLEK----EKPD-AVLFYGDT 104 (385)
T ss_dssp EEEEECSCHHHH----HHTHHHHC-CCCCCCSEECCCCC--CCS--HHHHHHHHHHHHHHHHH----HCCS-EEEEESCS
T ss_pred EEEEEeCCCCCh----hHHHHHHhhCCCCCCceecCCCC--CCH--HHHHHHHHHHHHHHHHh----cCCc-EEEEECCc
Confidence 578888876332 2333 35889984 332222222 122 22233333444444433 2355 88888888
Q ss_pred CCCchhhhcccCCCCeeccC
Q psy246 521 SNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 521 ~~~L~gvva~~t~~PVI~vP 540 (615)
...++...|....+||+.+=
T Consensus 105 ~~~~aalaA~~~~IPv~h~e 124 (385)
T 4hwg_A 105 NSCLSAIAAKRRKIPIFHME 124 (385)
T ss_dssp GGGGGHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHhCCCEEEEe
Confidence 88888556667889998763
No 198
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.10 E-value=1.3e+02 Score=30.32 Aligned_cols=83 Identities=10% Similarity=-0.045 Sum_probs=49.4
Q ss_pred eEEEEeCCCCCH-HHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEecCCC
Q psy246 443 LVVLALGSSSDL-PFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521 (615)
Q Consensus 443 ~V~Ii~gs~SD~-~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~AG~~ 521 (615)
+++||.-..|.- ...+++...|++.|+++.-...- .+....+++ +++...+++ ++| ++|+.
T Consensus 31 ~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~-----~~~~~~~~~-----------~~~~~~~~d-~vv-v~GGD 92 (332)
T 2bon_A 31 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW-----EKGDAARYV-----------EEARKFGVA-TVI-AGGGD 92 (332)
T ss_dssp CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC-----STTHHHHHH-----------HHHHHHTCS-EEE-EEESH
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec-----CcchHHHHH-----------HHHHhcCCC-EEE-EEccc
Confidence 577765433321 66788899999999988622222 223333333 222223566 444 45777
Q ss_pred CCchhhhccc------CCCCeeccCCCC
Q psy246 522 NGLGPVISGN------TCYPVINCPPLD 543 (615)
Q Consensus 522 ~~L~gvva~~------t~~PVI~vP~~~ 543 (615)
+.+-.|+.++ +..|+..+|.-+
T Consensus 93 GTl~~v~~~l~~~~~~~~~plgiiP~Gt 120 (332)
T 2bon_A 93 GTINEVSTALIQCEGDDIPALGILPLGT 120 (332)
T ss_dssp HHHHHHHHHHHHCCSSCCCEEEEEECSS
T ss_pred hHHHHHHHHHhhcccCCCCeEEEecCcC
Confidence 8888888775 356766677654
No 199
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.90 E-value=97 Score=24.55 Aligned_cols=53 Identities=8% Similarity=0.092 Sum_probs=36.9
Q ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCee--EEEecccCCc----chHHHHHHH
Q psy246 439 PTDNLVVLALGSSSDLPFANKIDDANHDPQWSDE--QILSANLDNV----ARDEVQIMK 491 (615)
Q Consensus 439 ~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~--~V~saHR~~~----~p~~~~~~~ 491 (615)
++.+.-.|-.|+-++..-|+....-|...|++.. .--..||..| +.++..++.
T Consensus 5 ~~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~ 63 (79)
T 1x60_A 5 SSSGLYKVQIGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLA 63 (79)
T ss_dssp CCCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHH
Confidence 3456788999999999999999999988888754 2122344333 445666555
No 200
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=20.70 E-value=71 Score=31.94 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHhhccCCCee----EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCEEEEEe
Q psy246 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDE----QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517 (615)
Q Consensus 442 ~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~----~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~Ia~ 517 (615)
..|+|+=.|--=+.+++++...+-.-.+-|- ++=.--| +.+++.++. ..+.+.| +..|++.++||+
T Consensus 8 ~pIgvfDSGvGGLtv~~~i~~~lp~~~~iy~~D~a~~PYG~~---~~~~i~~~~---~~~~~~L----~~~g~~~iVIAC 77 (268)
T 3out_A 8 RPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTK---SRATIQKFA---AQTAKFL----IDQEVKAIIIAC 77 (268)
T ss_dssp SCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTS---CHHHHHHHH---HHHHHHH----HHTTCSEEEECC
T ss_pred CcEEEEECCCChHHHHHHHHHHCCCCcEEEecCCCCCCCCCC---CHHHHHHHH---HHHHHHH----HHCCCCEEEEeC
Confidence 3599998888889999999988754443331 1222236 777777665 2233333 446899677776
Q ss_pred cCCCC-CchhhhcccC-CCCeecc
Q psy246 518 AGKSN-GLGPVISGNT-CYPVINC 539 (615)
Q Consensus 518 AG~~~-~L~gvva~~t-~~PVI~v 539 (615)
--.++ +|.- +.... +.||||+
T Consensus 78 NTa~~~al~~-lr~~~~~iPvigi 100 (268)
T 3out_A 78 NTISAIAKDI-VQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHHH-HHHHHTTSCEEEH
T ss_pred CChHHHHHHH-HHHhcCCCCEEec
Confidence 55544 3443 44555 8999995
No 201
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=20.61 E-value=1.7e+02 Score=24.45 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=21.7
Q ss_pred hhhhcCCCCEEEEEecCCCCC----chhh---hcccCCCCeeccC
Q psy246 503 MKSWSSGKNVVFIAVAGKSNG----LGPV---ISGNTCYPVINCP 540 (615)
Q Consensus 503 ~~~~~~~~~~V~Ia~AG~~~~----L~gv---va~~t~~PVI~vP 540 (615)
+.++..+++.|+++--|+++- ++++ |.-++.+||+-||
T Consensus 93 ~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 93 QAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 444556788666665555421 2222 3345788888776
No 202
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=20.34 E-value=54 Score=32.32 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=53.4
Q ss_pred hhHHHHHHHhhcccCCCCCeEEEEeCCCCCHHHHHHHHHHhhccCCCeeEEEecccCCcchHHHHHHHHhhHHHHHHHHh
Q psy246 424 LNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVM 503 (615)
Q Consensus 424 enY~eVA~~L~~~k~~~~~~V~Ii~gs~SD~~~~~~~~~~l~~~gi~~~~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~ 503 (615)
++|.++++++.. ..-.|+++.|+..|.+.++++...+. + . .+++ .- +..++..++ +
T Consensus 197 ~~~~~l~~~L~~----~~~~vvl~~g~~~e~~~~~~i~~~~~--~--~-~l~g-~~---sl~el~ali-----------~ 252 (326)
T 2gt1_A 197 EHWRELIGLLAD----SGIRIKLPWGAPHEEERAKRLAEGFA--Y--V-EVLP-KM---SLEGVARVL-----------A 252 (326)
T ss_dssp HHHHHHHHHTTT----TCCEEEECCSSHHHHHHHHHHHTTCT--T--E-EECC-CC---CHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHH----CCCcEEEecCCHHHHHHHHHHHhhCC--c--c-cccC-CC---CHHHHHHHH-----------H
Confidence 578888888742 13356555688889888887754332 1 1 3333 22 566666665 3
Q ss_pred hhhcCCCCEEEEEecCCCCCchhhhcccCCCCeeccC
Q psy246 504 KSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCP 540 (615)
Q Consensus 504 ~~~~~~~~~V~Ia~AG~~~~L~gvva~~t~~PVI~vP 540 (615)
.++ ++|+.-.+..||+. ....|+|++-
T Consensus 253 -----~a~-l~I~~DSG~~HlAa----a~g~P~v~lf 279 (326)
T 2gt1_A 253 -----GAK-FVVSVDTGLSHLTA----ALDRPNITVY 279 (326)
T ss_dssp -----TCS-EEEEESSHHHHHHH----HTTCCEEEEE
T ss_pred -----hCC-EEEecCCcHHHHHH----HcCCCEEEEE
Confidence 366 99999666677754 3678999983
No 203
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.09 E-value=1.1e+02 Score=28.80 Aligned_cols=114 Identities=10% Similarity=-0.032 Sum_probs=59.0
Q ss_pred CeEEEEe----CCCC---CHHHHHHHHHHhhccCCCee--EEEecccCCcchHHHHHHHHhhHHHHHHHHhhhhcCCCCE
Q psy246 442 NLVVLAL----GSSS---DLPFANKIDDANHDPQWSDE--QILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNV 512 (615)
Q Consensus 442 ~~V~Ii~----gs~S---D~~~~~~~~~~l~~~gi~~~--~V~saHR~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 512 (615)
.+|++++ |... .....+...+++++.|++++ .+..... +++...+.+ -+.|.+ . ...+
T Consensus 136 ~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~------~~~l~~-~--~~~~- 202 (304)
T 3gbv_A 136 REIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHAD---LNIEDSRML------DDFFRE-H--PDVK- 202 (304)
T ss_dssp SEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESS---CSSCHHHHH------HHHHHH-C--TTCC-
T ss_pred CeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCC---CHHHHHHHH------HHHHHh-C--CCeE-
Confidence 6899998 4332 34556677788899998876 3333322 333222221 122222 1 2355
Q ss_pred EEEEecCCCCCchhhhcccC-----CCCeeccCCCCCchhhhhhhhc-CCCCceeeeec-ChhhHHHHHHHHH
Q psy246 513 VFIAVAGKSNGLGPVISGNT-----CYPVINCPPLDSTGRDVWSSLN-LPAGIACSTVT-APSNAALAAAQIL 578 (615)
Q Consensus 513 V~Ia~AG~~~~L~gvva~~t-----~~PVI~vP~~~~g~~~l~S~lq-mp~Gv~v~tv~-~~~nAa~~A~~Il 578 (615)
+|++.... ++ |++.+.. ++.||| .|..-...+ +.+|+..+||. ++..-|..|+++|
T Consensus 203 ai~~~~d~--a~-g~~~al~~~g~~di~vig-------~d~~~~~~~~~~~~~~~~tv~~~~~~~g~~av~~l 265 (304)
T 3gbv_A 203 HGITFNSK--VY-IIGEYLQQRRKSDFSLIG-------YDLLERNVTCLKEGTVSFLIAQQPELQGFNSIKTL 265 (304)
T ss_dssp EEEESSSC--TH-HHHHHHHHTTCCSCEEEE-------ESCCHHHHHHHHHTSEEEEEECCHHHHHHHHHHHH
T ss_pred EEEEcCcc--hH-HHHHHHHHcCCCCcEEEE-------eCCCHHHHHHHHcCceEEEEEeCHHHHHHHHHHHH
Confidence 88887766 34 4554433 334444 332222122 23566665773 5666666666554
Done!