RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy246
(615 letters)
>gnl|CDD|133471 cd01416, SAICAR_synt_Ade5, Ade5_like
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic group of
SAICAR synthetases represented by the Drosophila
melanogaster, N-terminal, SAICAR synthetase domain of
bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs)
catalyzes the sixth and seventh steps of the de novo
biosynthesis of purine nucleotides (also reported as
seventh and eighth steps). SAICAR synthetase converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 252
Score = 278 bits (712), Expect = 1e-89
Identities = 133/366 (36%), Positives = 171/366 (46%), Gaps = 120/366 (32%)
Query: 75 NVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDI 134
+G LIEGKTK ++ L P V++ +K D
Sbjct: 2 KLGKKLIEGKTKIVYELPDQPGLVLIQSK-----------------------------DR 32
Query: 135 LNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTA-EGLNQVKLNFTWI 193
+ A G G RK+ ++ K N + E L + +
Sbjct: 33 ITA--------------------GDGARKDEIEGKAAISNKTTSNVFELLQEAGIK---- 68
Query: 194 ADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQ 253
VK+ SPT F+AR MIPIEWV RR+ATGS+LKR+PG +E YRF PP
Sbjct: 69 ---THFVKQC-----SPTAFIARKCEMIPIEWVCRRIATGSFLKRNPGVKEGYRFSPPKL 120
Query: 254 ETFFKDDANHDPQWSDEQILSANLD----NVARDEVQIMKRLSLVVFEILEKVWASLNCV 309
E F+KDDANHDPQWS+EQ+L A L+ + + EV IM + ++ +FEILEK WA+ +C
Sbjct: 121 EFFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMTKSTIAIFEILEKAWATQDCT 180
Query: 310 LVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMK 369
LVDMKIEFG+D EIL
Sbjct: 181 LVDMKIEFGVDVTTG---------------------------EIL--------------- 198
Query: 370 IEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWI 429
++DVID+DSWRLWP G K LMKDKQVYRNL VT E L +VK N+ W+
Sbjct: 199 ------------LADVIDNDSWRLWPSGDKRLMKDKQVYRNLKEVTDEALQEVKKNYEWV 246
Query: 430 ADTLAS 435
AD L
Sbjct: 247 ADKLEL 252
Score = 117 bits (295), Expect = 1e-29
Identities = 75/254 (29%), Positives = 108/254 (42%), Gaps = 67/254 (26%)
Query: 10 NVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDI 69
+G LIEGKTK ++ L P V++ +KDRITAGDGAR +++GKA I+ KT + VF++
Sbjct: 2 KLGKKLIEGKTKIVYELPDQPGLVLIQSKDRITAGDGARKDEIEGKAAISNKTTSNVFEL 61
Query: 70 LNAS--------ENVGDLLIEGKTKKIHL------------------------------- 90
L + + I K + I +
Sbjct: 62 LQEAGIKTHFVKQCSPTAFIARKCEMIPIEWVCRRIATGSFLKRNPGVKEGYRFSPPKLE 121
Query: 91 --LKSDPNTVVVINKDRITAGDGARAHDLKGKAE--IATKTNTLVFDILNAAEMSM---- 142
K D N +++++ GK E I TK+ +F+IL A +
Sbjct: 122 FFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMTKSTIAIFEILEKAWATQDCTL 181
Query: 143 ----IKY---SEENE------YD----KIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQ 185
I++ E D ++ P G K LMKDKQVYRNL VT E L +
Sbjct: 182 VDMKIEFGVDVTTGEILLADVIDNDSWRLWPSGD---KRLMKDKQVYRNLKEVTDEALQE 238
Query: 186 VKLNFTWIADTLAS 199
VK N+ W+AD L
Sbjct: 239 VKKNYEWVADKLEL 252
Score = 65.0 bits (159), Expect = 1e-11
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 461 DDANHDPQWSDEQILSANLD----NVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFI 515
DDANHDPQWS+EQ+L A L+ + + EV IM + ++ +FEIL K+W++ ++ +
Sbjct: 126 DDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMTKSTIAIFEIL-EKAWAT-QDCTLV 182
>gnl|CDD|216394 pfam01259, SAICAR_synt, SAICAR synthetase. Also known as
Phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 243
Score = 156 bits (397), Expect = 7e-44
Identities = 62/222 (27%), Positives = 81/222 (36%), Gaps = 51/222 (22%)
Query: 209 SPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWS 268
S T L + + MIPIE V R ATGS+LKR+ G E + P E+F+K DA DP
Sbjct: 73 SDTELLVKKLKMIPIEVVVRGYATGSFLKRYTGVVEGIKLPPGLVESFYKPDAIFDPSTK 132
Query: 269 DEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF 328
E + + F
Sbjct: 133 AEHDENIS---------------------------------------------------F 141
Query: 329 PQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDS 388
QA + + E L E L+K A +LVD K EFG+D +G IL++D I
Sbjct: 142 AQAELLVGKEEADRMKEKTLALYEKLKKYAADKGIILVDTKFEFGLDKDGEILLADEISP 201
Query: 389 DSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIA 430
DS RLW E DKQ R+ E +V
Sbjct: 202 DSSRLWDADTYEKQYDKQFLRDWLGSNGEAYEEVGPKLPEDI 243
Score = 60.5 bits (147), Expect = 4e-10
Identities = 53/252 (21%), Positives = 83/252 (32%), Gaps = 83/252 (32%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAS 73
LL GK K I+ D NT++++ KDRI+A DG R + + GK I KT++ F+ L
Sbjct: 4 LLARGKVKDIYETD-DENTLLMVAKDRISAFDGIRKNQIPGKGRILNKTSSFWFEFLQE- 61
Query: 74 ENVGDLLIEGKTKKIHLLKSDPNTVVVINK----------DRITAGDG------------ 111
H ++S +T +++ K G
Sbjct: 62 ----------AGIPNHFVESLSDTELLVKKLKMIPIEVVVRGYATGSFLKRYTGVVEGIK 111
Query: 112 ------------------------------ARAHDLKGKAEIAT--KTNTLVFDILN--A 137
A+A L GK E + +++ L A
Sbjct: 112 LPPGLVESFYKPDAIFDPSTKAEHDENISFAQAELLVGKEEADRMKEKTLALYEKLKKYA 171
Query: 138 AEMSMI----KY----SEENEY---DKIPPGGSGL----RKELMKDKQVYRNLSNVTAEG 182
A+ +I K+ ++ E D+I P S L E DKQ R+ E
Sbjct: 172 ADKGIILVDTKFEFGLDKDGEILLADEISPDSSRLWDADTYEKQYDKQFLRDWLGSNGEA 231
Query: 183 LNQVKLNFTWIA 194
+V
Sbjct: 232 YEEVGPKLPEDI 243
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 459 KIDDANHDPQWSDEQILSANL----DNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVF 514
DA DP E + + V ++E MK +L ++E L K +++ K ++
Sbjct: 121 YKPDAIFDPSTKAEHDENISFAQAELLVGKEEADRMKEKTLALYEKL--KKYAADKGIIL 178
Query: 515 I 515
+
Sbjct: 179 V 179
>gnl|CDD|133468 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. SAICAR synthetase
(the PurC gene product) catalyzes the seventh step of
the de novo biosynthesis of purine nucleotides (also
reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 135 bits (342), Expect = 2e-36
Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 64/236 (27%)
Query: 198 ASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFF 257
A + + P L + IP+E V R ATGS++KR+ G +E F PP E F+
Sbjct: 58 AGIPTHFVERLGPRTLLVDKLKXIPLEVVVRNRATGSFVKRYGGFKEGREFPPPLVEFFY 117
Query: 258 KDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEF 317
KDDA HDP S++Q+ L + + +V+ K L++ + +L+K+++ L D K+EF
Sbjct: 118 KDDAEHDPIVSEDQL--ERLGFIGKVDVERXKELAVKINTVLKKLFSPAGLELWDFKLEF 175
Query: 318 GIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNE 377
G+D EG++ VL D
Sbjct: 176 GLDEEGEI--------------------------------------VLGD---------- 187
Query: 378 GNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTL 433
I DS RLW +G + KD R L Q+ + +A+ +
Sbjct: 188 -------EISPDSSRLWRKGGEPYDKDLFRRR-------ASLGQIIEKYEEVAELV 229
Score = 47.5 bits (113), Expect = 6e-06
Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAS 73
L GKTK ++ K +++ KD I+AGDGAR + L K +I K +F L+ +
Sbjct: 1 TLYRGKTKIVYETKDG--VLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLSEA 58
Query: 74 --ENVGDLLIEGKTKKIHLLKSDPNTVVVINK---------------------------- 103
+ +T + LK P VVV N+
Sbjct: 59 GIPTHFVERLGPRTLLVDKLKXIPLEVVVRNRATGSFVKRYGGFKEGREFPPPLVEFFYK 118
Query: 104 -----DRITAGDGARAHDLKGK------AEIATKTNTLVFDILNAA--EMSMIKYS---- 146
D I + D GK E+A K NT++ + + A E+ K
Sbjct: 119 DDAEHDPIVSEDQLERLGFIGKVDVERXKELAVKINTVLKKLFSPAGLELWDFKLEFGLD 178
Query: 147 EENEY---DKIPPGGSGLRK----ELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTL 197
EE E D+I P S L + KD R L Q+ + +A+ +
Sbjct: 179 EEGEIVLGDEISPDSSRLWRKGGEPYDKDLFRRR-------ASLGQIIEKYEEVAELV 229
Score = 37.8 bits (88), Expect = 0.009
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
DDA HDP S++Q+ L + + +V+ K L++ + +L
Sbjct: 119 DDAEHDPIVSEDQL--ERLGFIGKVDVERXKELAVKINTVL 157
>gnl|CDD|130230 TIGR01162, purE, phosphoribosylaminoimidazole carboxylase, PurE
protein. Phosphoribosylaminoimidazole carboxylase is a
fusion protein in plants and fungi, but consists of two
non-interacting proteins in bacteria, PurK and PurE.
This model represents PurK, an N5-CAIR mutase [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 156
Score = 107 bits (270), Expect = 2e-27
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 39/178 (21%)
Query: 444 VVLALGSSSDLPFANKIDDA------NHDPQWSDEQILSANLDNVARDEVQIMKRLSLVV 497
V + +GS SDLP K D ++ +++SA+ R ++
Sbjct: 1 VGIIMGSDSDLPTMKKAADILEEFGIPYE-----LRVVSAH-------------RTPELM 42
Query: 498 FEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVW 550
E K V IA AG + L +++ T PVI P LDS +
Sbjct: 43 LEYA--KEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDS----LL 96
Query: 551 SSLNLPAGIACSTVTAPS--NAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKK 606
S + +P+G+ +TV + NAAL AAQIL +D + KL+ Y+ + K++KK
Sbjct: 97 SIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKK 154
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. A subfamily of SAICAR
synthetases represented by the Thermotoga maritima (Tm)
enzyme and E. coli PurC. SAICAR synthetase catalyzes the
seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 109 bits (274), Expect = 5e-27
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
+S L + V +IP+E V R +A GS +KR +E PP E ++K+D DP
Sbjct: 68 KLSDREQLVKKVEIIPLEVVVRNIAAGSLVKRLGI-EEGTVLDPPIVEFYYKNDELGDPL 126
Query: 267 WSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
+++ IL+ L +E++ +K L+L + E+L + +A + +LVD K+EFG D +G++
Sbjct: 127 INEDHILALGL--ATEEELKEIKELALKINEVLSEFFAEIGIILVDFKLEFGRDKDGEI 183
Score = 64.0 bits (157), Expect = 2e-11
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 339 EVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGK 398
E+ + + K+ E+L + +A + +LVD K+EFG D +G I+++D I D+ RLW +
Sbjct: 142 ELKEIKELALKINEVLSEFFAEIGIILVDFKLEFGRDKDGEIVLADEISPDTCRLWDKET 201
Query: 399 KELMKDKQVYR-NLSNVT 415
E + DK +R +L +V
Sbjct: 202 GEKL-DKDRFRRDLGDVI 218
Score = 49.4 bits (119), Expect = 2e-06
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 79 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138
LL EGK K ++ DP+ ++V KD TA +G + ++GK + + + L+F L
Sbjct: 1 LLYEGKAKIVYA-TDDPDVLIVEFKDDATAFNGKKKDTIEGKGVLNNEISALIFKYLEEN 59
Query: 139 --EMSMIKYSEENE 150
+ I+ + E
Sbjct: 60 GIKTHFIEKLSDRE 73
Score = 48.2 bits (116), Expect = 4e-06
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAS 73
LL EGK K ++ DP+ ++V KD TA +G + ++GK + + + L+F L +
Sbjct: 1 LLYEGKAKIVYA-TDDPDVLIVEFKDDATAFNGKKKDTIEGKGVLNNEISALIFKYLEEN 59
Score = 34.4 bits (80), Expect = 0.12
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502
+D DP +++ IL+ L +E++ +K L+L + E+L
Sbjct: 119 NDELGDPLINEDHILALGL--ATEEELKEIKELALKINEVLS 158
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed.
Length = 238
Score = 108 bits (272), Expect = 1e-26
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
+S L + V +IP+E V R +A GS +KR +E PP E ++K+DA DP
Sbjct: 73 KLSDREQLVKKVEIIPLEVVVRNVAAGSLVKRLGI-EEGTVLPPPIVEFYYKNDALGDPM 131
Query: 267 WSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
+++ IL+ +E+ +K L+L + ++L+ ++A LVD K+EFG D +G++
Sbjct: 132 INEDHILALGW--ATPEELAEIKELALKINDVLKGLFAGAGIRLVDFKLEFGRDKDGEI 188
Score = 65.1 bits (160), Expect = 7e-12
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 339 EVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGK 398
E+++ + K+ ++L+ ++A LVD K+EFG D +G I+++D I D+ RLW +
Sbjct: 147 ELAEIKELALKINDVLKGLFAGAGIRLVDFKLEFGRDKDGEIVLADEISPDTCRLWDKET 206
Query: 399 KELMKDKQVYR-NLSNVT 415
E + DK +R +L V
Sbjct: 207 NEKL-DKDRFRRDLGGVI 223
Score = 50.5 bits (122), Expect = 7e-07
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136
+LL EGK K ++ DP+ ++V KD TA +G + + GK + + ++ +F L
Sbjct: 4 KELLYEGKAKIVYST-DDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKKLE 62
Query: 137 AA--EMSMIKYSEENE 150
A I+ + E
Sbjct: 63 EAGIPTHFIEKLSDRE 78
Score = 48.6 bits (117), Expect = 3e-06
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
+LL EGK K ++ DP+ ++V KD TA +G + + GK + + ++ +F L
Sbjct: 4 KELLYEGKAKIVYST-DDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKKLE 62
Query: 72 A 72
Sbjct: 63 E 63
Score = 36.2 bits (85), Expect = 0.034
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502
+DA DP +++ IL+ +E+ +K L+L + ++L
Sbjct: 124 NDALGDPMINEDHILALGW--ATPEELAEIKELALKINDVLK 163
>gnl|CDD|144362 pfam00731, AIRC, AIR carboxylase. Members of this family catalyze
the decarboxylation of
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
(AIR). This family catalyze the sixth step of de novo
purine biosynthesis. Some members of this family contain
two copies of this domain.
Length = 150
Score = 100 bits (251), Expect = 9e-25
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGR---DVWSSLNLPAGIACSTVT--AP 567
V IA AG + L +++ T PVI P + S + +P+GI +TV
Sbjct: 58 VIIAGAGGAAHLPGMVAALTTLPVIGVPVKSKALGGLDSLLSIVQMPSGIPVATVAIGGA 117
Query: 568 SNAALAAAQILAQRDFFIWSKLRMYQTKL 596
NAAL AAQILA +D + KL Y+ +L
Sbjct: 118 KNAALLAAQILALKDPELAEKLEAYREEL 146
>gnl|CDD|214965 smart01001, AIRC, AIR carboxylase. Members of this family catalyse
the decarboxylation of
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate
(AIR). This family catalyse the sixth step of de novo
purine biosynthesis. Some members of this family contain
two copies of this domain.
Length = 152
Score = 93.0 bits (232), Expect = 3e-22
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 25/167 (14%)
Query: 443 LVVLALGSSSDLPFANKIDDA--NHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEI 500
LV + +GS+SDLP + + + + SA+ R +FE
Sbjct: 2 LVGIIMGSTSDLPVMEEAAKTLEEFGIPY-EVGVASAH-------------RTPDRLFEY 47
Query: 501 LVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGR---DVWSSLNLPA 557
K V IA AG + L V++ T PVI P + S + +P+
Sbjct: 48 --AKEAEDRGIKVIIAGAGGAAHLPGVVAALTTLPVIGVPVSSGYLGGLDSLLSIVQMPS 105
Query: 558 GIACSTVT----APSNAALAAAQILAQRDFFIWSKLRMYQTKLYIAL 600
GI +TV NAAL AAQILA D + +KL Y+ +
Sbjct: 106 GIPVATVAIGIDGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
>gnl|CDD|223230 COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide
(SAICAR) synthase [Nucleotide transport and metabolism].
Length = 247
Score = 88.0 bits (219), Expect = 1e-19
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 58/204 (28%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
L+S L + + +IP+E V R A GS LKR+ E P E +K+D DP
Sbjct: 73 LLSDREQLVKKLEIIPLEVVVRNYAAGSLLKRYGIE-EGTVLGIPLVEFLYKNDELPDPI 131
Query: 267 WSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVS 326
+DE I + + +E++ +K L+L + E+L+ ++A +LVD K+EFG+D +G++
Sbjct: 132 VTDEHISALGI--ATPEEIEEIKELALKINEVLKDLFAKRGIILVDFKLEFGLDEDGEI- 188
Query: 327 FFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI 386
VL D E
Sbjct: 189 -------------------------------------VLAD---EIS------------- 195
Query: 387 DSDSWRLWPEGKKELMKDKQVYRN 410
DS RLW E DK +R
Sbjct: 196 -PDSCRLWDAETYEKSLDKDFFRR 218
Score = 51.8 bits (125), Expect = 3e-07
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 79 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138
LL EGK K ++ DP+ +++ DR +A DG + + GK + + + +F+ L A
Sbjct: 6 LLYEGKAKDLYETD-DPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEEA 64
Query: 139 EMS--MIKYSEENEY 151
+ I+ + E
Sbjct: 65 GIPTHFIELLSDREQ 79
Score = 48.4 bits (116), Expect = 3e-06
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNA 72
LL EGK K ++ DP+ +++ DR +A DG + + GK + + + +F+ L
Sbjct: 6 LLYEGKAKDLYETD-DPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEE 63
Score = 29.5 bits (67), Expect = 5.1
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
+D DP +DE I + + +E++ +K L+L + E+L
Sbjct: 124 NDELPDPIVTDEHISALGI--ATPEEIEEIKELALKINEVL 162
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Alternate name: SAICAR synthetase purine de
novo biosynthesis. E.coli example noted as homotrimer.
Check length. Longer versions may be multifunctional
enzymes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 237
Score = 87.1 bits (216), Expect = 3e-19
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
L+ L + + +IP+E + R +A GS LKR E P E FK D DP
Sbjct: 75 LIEDREMLVKKLDIIPLEVIVRNIAAGSLLKRLGIP-EGLELEQPLVEFIFKPDEVGDPM 133
Query: 267 WSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
++ + L +E++ +K L+L V E+L+K + +LVD K+EFG+D EG +
Sbjct: 134 LNESYAEALGL--ATEEELERIKELALKVNEVLKKYFDEKGIILVDFKLEFGLDEEGNL 190
Score = 46.2 bits (110), Expect = 2e-05
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 79 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138
L GK K I+ DP+ + + +D I+A DG + + GK + TK + +F+ L A
Sbjct: 8 KLYSGKAKDIYETD-DPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEKLEEA 66
Query: 139 EMSMIKYSEENEYDKIPPGGSGLRK--ELMKDKQVYRN 174
+ Y + L K +++ + + RN
Sbjct: 67 GI-------PTHYIDLIEDREMLVKKLDIIPLEVIVRN 97
Score = 44.7 bits (106), Expect = 5e-05
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDIL--N 71
L GK K I+ DP+ + + +D I+A DG + + GK + TK + +F+ L
Sbjct: 8 KLYSGKAKDIYETD-DPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEKLEEA 66
Query: 72 ASENVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGAR 113
LIE + + L P V+V N I AG +
Sbjct: 67 GIPTHYIDLIEDREMLVKKLDIIPLEVIVRN---IAAGSLLK 105
>gnl|CDD|223119 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
[Nucleotide transport and metabolism].
Length = 162
Score = 55.0 bits (133), Expect = 6e-09
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTVT 565
V IA AG + L +++ T PVI P LDS + S + +PAG+ +TV
Sbjct: 60 VIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDS----LLSIVQMPAGVPVATVA 115
Query: 566 A--PSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQ 609
+NAAL AAQILA +D + KL ++ + ++D++ +
Sbjct: 116 IGNAANAALLAAQILAIKDPELAEKLAEFREAQTEEVLEDDEELEE 161
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic,
bacterial, and archaeal group of SAICAR synthetases
represented by the Saccharomyces cerevisiae (Sc) enzyme,
mostly absent in metazoans. SAICAR synthetase catalyzes
the seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 279
Score = 51.0 bits (123), Expect = 5e-07
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 24/135 (17%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRH------------PGTQECYRFCPPCQE 254
+ + IPIE + R TGS K + G +E + P
Sbjct: 79 DPDGRSMVVKKAKPIPIECIVRGYLTGSGWKEYQKGGTVCGIKLPEGLREAQKLPEP--- 135
Query: 255 TFF----KDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVL 310
F K + HD S E+ + + + ++ L+L ++E + A +L
Sbjct: 136 -IFTPSTKAEEGHDENISFEEAVEI----IGAELADELRELALALYERAAEYAAKRGLIL 190
Query: 311 VDMKIEFGIDNEGKV 325
D K EFG+D G++
Sbjct: 191 ADTKFEFGLDENGEI 205
Score = 45.2 bits (108), Expect = 5e-05
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 343 CSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVID-SDSWRLWP-----E 396
+ L E + A +L D K EFG+D G I++ D + DS R WP
Sbjct: 168 LRELALALYERAAEYAAKRGLILADTKFEFGLDENGEIILIDEVLTPDSSRFWPADSYEP 227
Query: 397 GKKELMKDKQVYRN 410
GK++ DKQ R+
Sbjct: 228 GKEQPSFDKQFVRD 241
>gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 313
Score = 41.8 bits (99), Expect = 6e-04
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 210 PTVFLARNVTMIPIEWVTRRLATGSYLKRHP-GTQECY------------RFCPPC-QET 255
P V + + P+E V R GS + + G +E Y + P T
Sbjct: 84 PNVVVGKRCEPFPVEMVVRGYLAGSTWRLYKAGKREMYGVTLPDGLRENQKLPEPIITPT 143
Query: 256 FFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKI 315
++ HD S E+IL+ L + ++ + + +L +F +++ A +LVD K
Sbjct: 144 TKAEEGGHDEPISPEEILAQGL--LTPEDWDELSKYALALFARGQEMAAERGLILVDTKY 201
Query: 316 EFGIDNEGKV 325
EFG D +G++
Sbjct: 202 EFGKDADGRI 211
Score = 38.7 bits (91), Expect = 0.006
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 364 VLVDMKIEFGIDNEGNILVSDVIDS-DSWRLW 394
+LVD K EFG D +G I++ D I + DS R W
Sbjct: 195 ILVDTKYEFGKDADGRIVLIDEIHTPDSSRYW 226
>gnl|CDD|237571 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 296
Score = 39.4 bits (93), Expect = 0.004
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 364 VLVDMKIEFGIDNEGNILVSD-VIDSDSWRLWP-----EGKKELMKDKQVYRN 410
++ D K EFG+D +G + + D V+ DS R WP G + DKQ R+
Sbjct: 203 IIADTKFEFGLDEDGTLTLMDEVLTPDSSRFWPADSYQPGTSQPSFDKQFVRD 255
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
Length = 577
Score = 39.3 bits (92), Expect = 0.006
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 49/193 (25%)
Query: 419 LNQVKLNFTWIADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSAN 478
L+Q+ L P LV + +GS SDLP
Sbjct: 392 LDQL-LAEESADPDALPKGTP---LVGIIMGSDSDLP----------------------- 424
Query: 479 LDNVARDEVQIMKRLSLVVFEILV---------MKSWSS---GKNV-VFIAVAGKSNGLG 525
+D +I+ V +E+ + M S++ + + V IA AG + L
Sbjct: 425 ---TMKDAAEILDSFG-VPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLP 480
Query: 526 PVISGNTCYPVINCPPLDST--GRD-VWSSLNLPAGIACSTVTA--PSNAALAAAQILAQ 580
+++ T PVI P S G D + S + +P G+ +TV +NA L A ++L
Sbjct: 481 GMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGA 540
Query: 581 RDFFIWSKLRMYQ 593
D + K+ YQ
Sbjct: 541 SDPDLLDKMEAYQ 553
>gnl|CDD|178159 PLN02544, PLN02544, phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 370
Score = 37.9 bits (88), Expect = 0.012
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 173 RNLSNVTAEGLNQVKLNFT---WIADTLASVKRPTDN-LVS---PTVFLARNVTMIPIEW 225
R L+++ +G QV LN T W +T K T N LVS P V +A+ ++ P+E+
Sbjct: 106 RVLASIPFKG--QV-LNQTSAWWFNNT----KHITPNALVSSPDPNVTIAKKCSVFPVEF 158
Query: 226 VTRRLATGSY---LKRH---PGTQECYRFCPPCQETFFKDDAN----------HDPQWSD 269
V R TGS L C P K AN HD S
Sbjct: 159 VVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISP 218
Query: 270 EQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKV 325
E+I+ L + +++ + +L +F ++V A +LVD K EFG D +G +
Sbjct: 219 EEIVEEGL--MTQEDFDEVSSKALALFAFGQEVAAEHGLILVDTKYEFGKDADGTI 272
Score = 37.1 bits (86), Expect = 0.025
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 343 CSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDS-DSWRLW 394
SS L ++V A +LVD K EFG D +G IL+ D + + DS R W
Sbjct: 235 VSSKALALFAFGQEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYW 287
>gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 367
Score = 31.2 bits (71), Expect = 1.8
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 20/88 (22%)
Query: 349 KLL----EILEKVWASLNCVLVDMKIEFGI--DNEGN---ILVSDVIDSDSWRLWPEGKK 399
KLL +++ A L+ + VD K EFG D GN I + +V DS R+W
Sbjct: 217 KLLKEGFKVISDALAKLDQIFVDTKFEFGYVTDAAGNEKLIYMDEVGTPDSSRIW----- 271
Query: 400 ELMKDKQVYRNLSNV--TAEGLNQVKLN 425
D YR+ V + EG Q LN
Sbjct: 272 ----DGAAYRDGKIVENSKEGFRQFLLN 295
>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member
of the Nudix hydrolase superfamily, show nucleoside
triphosphatase and dinucleoside polyphosphate
pyrophosphatase activities. Like other enzymes belonging
to this superfamily, it requires a divalent cation, in
this case Mg2+, for its activity. It also contains a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. In general,
substrates of nudix hydrolases include intact and
oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 142
Score = 29.1 bits (65), Expect = 3.5
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 9/42 (21%)
Query: 567 PSNAALAAAQILAQRDFFIW---------SKLRMYQTKLYIA 599
A +A+ FF +LRM+QTKL
Sbjct: 100 GQTLAPKFTDEIAEASFFSREDVAQLYAQGQLRMHQTKLMYN 141
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as twitching
motility.
Length = 198
Score = 29.6 bits (67), Expect = 4.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 64 TLVFDILNASENVGDLLIEGKTKKIHLLKSDPNTVVVINKD 104
F+IL + V +L+ EGK +I L V +I D
Sbjct: 155 VPAFEILINTPAVRNLIREGKLHQIKSLIQTGQEVGMITFD 195
>gnl|CDD|237570 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 341
Score = 29.6 bits (67), Expect = 4.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 352 EILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI---DSDSWRLWPEGKKELMKD--KQ 406
EI+ + + D KIEF + E I V DV+ D + + +EL K+ +Q
Sbjct: 212 EIITEEAEKRGLIHEDGKIEFALYEEREIRVVDVVGTFDENRFSY---EGQELSKEVVRQ 268
Query: 407 VYRN 410
YR
Sbjct: 269 YYRR 272
>gnl|CDD|224549 COG1634, COG1634, Uncharacterized Rossmann fold enzyme [General
function prediction only].
Length = 232
Score = 29.3 bits (66), Expect = 5.3
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 524 LGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQI 577
L +I G V P L+ + G++ V A A A +
Sbjct: 46 LLELIEGREVAVVGAGPSLEEEIK----------GLSSEVVIAADGAVSALLER 89
>gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional.
Length = 349
Score = 29.2 bits (66), Expect = 7.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 544 STGRDVW--SSLNLPAGIACSTVTAPSNAALAAAQILAQRD 582
+ GR W +L L A AC A + AA AA++ A R
Sbjct: 227 TRGRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRA 267
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,999,772
Number of extensions: 3041665
Number of successful extensions: 2350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2319
Number of HSP's successfully gapped: 66
Length of query: 615
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 512
Effective length of database: 6,369,140
Effective search space: 3260999680
Effective search space used: 3260999680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.5 bits)