RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy246
(615 letters)
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 298 bits (765), Expect = 1e-95
Identities = 191/548 (34%), Positives = 259/548 (47%), Gaps = 142/548 (25%)
Query: 75 NVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDI 134
N+G L EGKTK+++ L P V++ +KD+IT
Sbjct: 8 NIGKKLYEGKTKEVYELLDSPGKVLLQSKDQIT--------------------------- 40
Query: 135 LNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRN-LSNVTAEGLNQ--VKLNFT 191
G+ RK ++ K N +++ + L + +K F
Sbjct: 41 ----------------------AGNAARKNHLEGKAAISNKITSCIFQLLQEAGIKTAF- 77
Query: 192 WIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPP 251
++ T F+A MIPIEWV RR+ATGS+LKR+PG +E Y+F PP
Sbjct: 78 --------TRK-----CGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPP 124
Query: 252 CQETFFKDDANHDPQWSDEQILSANLDN----VARDEVQIMKRLSLVVFEILEKVWASLN 307
E FFKDDAN+DPQWS+EQ+++A + + EV IM + +FEILEK W N
Sbjct: 125 KVELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEILEKSWLPQN 184
Query: 308 CVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVD 367
C LVDMKIEFG+D
Sbjct: 185 CTLVDMKIEFGVDVT--------------------------------------------T 200
Query: 368 MKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFT 427
+I +++DVID+DSWRLWP G + KDKQ YR+L VT EGL VK NF
Sbjct: 201 KEI----------VLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFE 250
Query: 428 W-IADTLASVKRPTDNLVVLALGSSSDLPFANKIDDANHDPQWSDE-QILSANLDNVARD 485
W +K + VV+ +GS+SDL KI A + E ++ SA+
Sbjct: 251 WVAERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAH------- 303
Query: 486 EVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPL--D 543
+ I + G VF+AVAG+SNGLGPV+SGNT YPVI+CPPL D
Sbjct: 304 ------KGPDETLRIKA-EYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPD 356
Query: 544 STGRDVWSSLNLPAGIACSTVTAPSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKE 603
+DVWSSL LP+G+ CSTV +P +A AAQI + +WSKLR +I+L +
Sbjct: 357 WGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQA 416
Query: 604 DKKSRQEN 611
DKK R+ N
Sbjct: 417 DKKIRECN 424
Score = 69.2 bits (169), Expect = 1e-12
Identities = 61/264 (23%), Positives = 97/264 (36%), Gaps = 61/264 (23%)
Query: 10 NVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDI 69
N+G L EGKTK+++ L P V++ +KD+ITAG+ AR + L+GKA I+ K + +F +
Sbjct: 8 NIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQL 67
Query: 70 LNA-----------SEN--------------------VGDL------LIEGKTKKIHL-- 90
L E G + EG
Sbjct: 68 LQEAGIKTAFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYKFYPPKVE 127
Query: 91 --LKSDPNTVVVINKDRITAGDGARAHDLKGKAEI------ATKTNTLVFDILNAAEMSM 142
K D N +++++ A A L G+ E+ ++ ++
Sbjct: 128 LFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEILEKSWLPQNCTL 187
Query: 143 IKYSEENEY----------DKIPPGGSGLR----KELMKDKQVYRNLSNVTAEGLNQVKL 188
+ E D I L + KDKQ YR+L VT EGL VK
Sbjct: 188 VDMKIEFGVDVTTKEIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKK 247
Query: 189 NFTWIADTLASVKRPTDNLVSPTV 212
NF W+A+ + + + +
Sbjct: 248 NFEWVAERVELLLKSESQCRVVVL 271
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer
sandwich, ligase, purine biosynthesis, structural
genomics; HET: ATP CIT; 2.03A {Methanocaldococcus
jannaschii} PDB: 2yzl_A*
Length = 242
Score = 142 bits (359), Expect = 8e-39
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 66/227 (29%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
+ P +A+ V +IPIE + R +A GS +R+ +E P + +K+D DP
Sbjct: 79 YIEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRY-PFEEGKELPFPIVQFDYKNDEYGDPM 137
Query: 267 WSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVS 326
+++ ++ L R+E+ +K ++L V E+L+K++ +LVD KIE G D EG
Sbjct: 138 LNEDIAVALGL--ATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREG--- 192
Query: 327 FFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI 386
N ++ D I
Sbjct: 193 -----------------------------------NLLVAD-----------------EI 200
Query: 387 DSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTL 433
D+ RLW + ++++ DK V+R L V + +A+ L
Sbjct: 201 SPDTMRLWDKETRDVL-DKDVFRK-------DLGDVIAKYRIVAERL 239
Score = 57.7 bits (140), Expect = 2e-09
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136
L GK K I+ + D + V++ +D ITAG+GA+ +GK + ++ +F+ L
Sbjct: 11 KQPLYSGKAKSIY--EIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEALE 68
Query: 137 AAEMS--MIKYSEENE 150
+ IKY E
Sbjct: 69 ENGVKTHYIKYIEPRY 84
Score = 56.9 bits (138), Expect = 3e-09
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
L GK K I+ + D + V++ +D ITAG+GA+ +GK + ++ +F+ L
Sbjct: 11 KQPLYSGKAKSIY--EIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEALE 68
Query: 72 A 72
Sbjct: 69 E 69
Score = 40.0 bits (94), Expect = 0.001
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
+D DP +++ ++ L R+E+ +K ++L V E+L
Sbjct: 130 NDEYGDPMLNEDIAVALGL--ATREELNKIKEIALKVNEVL 168
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.143.1.1
Length = 230
Score = 141 bits (357), Expect = 1e-38
Identities = 48/231 (20%), Positives = 78/231 (33%), Gaps = 68/231 (29%)
Query: 207 LVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
+ P + M P+E V R GS+++R+ G E P E F KDD HDP
Sbjct: 66 YIPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRY-GGAEGEDLPVPLVEFFIKDDERHDPM 124
Query: 267 WSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVS 326
+ + + + + + MK ++ + L++ + N L D+K EFG+D +G V
Sbjct: 125 VCVDHLEILGI--ATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDGNV- 181
Query: 327 FFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVI 386
VL D I
Sbjct: 182 -------------------------------------VLGDE-----------------I 187
Query: 387 DSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVK 437
D++RL +G+ DK VYR L + + + S+
Sbjct: 188 SPDTFRLRKKGEI---FDKDVYRR-------DLGDPLKKYREVLELCRSLN 228
Score = 59.9 bits (146), Expect = 3e-10
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 79 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAA 138
+ EGKTK + + ++ KD ITAGDG + L GK I +T ++ L+
Sbjct: 1 MNYEGKTKIVK---VTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEK 57
Query: 139 EMS--MIKYSEENE 150
+ +++Y
Sbjct: 58 GIKTHLVEYIPPRT 71
Score = 58.8 bits (143), Expect = 6e-10
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 14 LLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAS 73
+ EGKTK + + ++ KD ITAGDG + L GK I +T ++ L+
Sbjct: 1 MNYEGKTKIVK---VTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLS-- 55
Query: 74 ENVGDLLIEGKTKKIHLLKSDPNTVVVINK 103
+ I KT HL++ P + +
Sbjct: 56 ----EKGI--KT---HLVEYIPPRTLKVIP 76
Score = 42.2 bits (100), Expect = 2e-04
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
DD HDP + + + + + + MK ++ + L
Sbjct: 117 DDERHDPMVCVDHLEILGI--ATKKQAEKMKEAAVKITLAL 155
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC,
ADE2, ADE1, nucleotide complex, octahedral magnesium
coordination; HET: ADP; 2.00A {Escherichia coli} PDB:
2gqs_A*
Length = 237
Score = 135 bits (343), Expect = 1e-36
Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 68/247 (27%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136
L GK K ++ +P+ +V+ ++ +A D
Sbjct: 4 QAELYRGKAKTVYST-ENPDLLVLEFRNDTSA-----------------------GD--- 36
Query: 137 AAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADT 196
G R E K + ++N +I
Sbjct: 37 -----------------------GARIEQFDRKGM---VNNKFNY----------FIMSK 60
Query: 197 LASVKRPTD--NLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQE 254
LA PT L+S T L + + M+P+E V R A GS +KR G +E PP +
Sbjct: 61 LAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKR-LGIEEGIELNPPLFD 119
Query: 255 TFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMK 314
F K+DA HDP ++ + V+++ + MK L+ ++L+K++ +LVD K
Sbjct: 120 LFLKNDAMHDPMVNESYCETFGW--VSKENLARMKELTYKANDVLKKLFDDAGLILVDFK 177
Query: 315 IEFGIDN 321
+EFG+
Sbjct: 178 LEFGLYK 184
Score = 61.5 bits (150), Expect = 8e-11
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
L GK K ++ +P+ +V+ ++ +AGDGAR K + K N + L
Sbjct: 4 QAELYRGKAKTVYST-ENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLA 62
Score = 40.7 bits (96), Expect = 7e-04
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
+DA HDP ++ + V+++ + MK L+ ++L
Sbjct: 124 NDAMHDPMVNESYCETFGW--VSKENLARMKELTYKANDVL 162
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex,
structural genomics, NPPSFA; HET: ADP; 1.75A
{Geobacillus kaustophilus}
Length = 244
Score = 129 bits (326), Expect = 3e-34
Identities = 57/226 (25%), Positives = 84/226 (37%), Gaps = 66/226 (29%)
Query: 208 VSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW 267
+SPT L R VT+IP+E V R + GS KR G +E P E ++K+D DP
Sbjct: 77 LSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRI-GLEEGTPLEAPLVEFYYKNDDLGDPLL 135
Query: 268 SDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSF 327
++ I L +R+EV +K+ +L V ++L +A N L+D K+EFG +G
Sbjct: 136 LEDHIFILKL--ASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADG---- 189
Query: 328 FPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVID 387
+L D I
Sbjct: 190 ----------------------------------AILLAD-----------------EIS 198
Query: 388 SDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTL 433
D+ RLW E + DK V+R L + + I L
Sbjct: 199 PDTCRLWDAKTNEKL-DKDVFRR-------DLGSLTDAYEVILQRL 236
Score = 60.8 bits (148), Expect = 1e-10
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136
LL EGK KKI+ +P+ + V KD TA +G + + GK + + ++L+F L
Sbjct: 7 QQLLYEGKAKKIYAT-DEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLR 65
Query: 137 AA 138
A
Sbjct: 66 EA 67
Score = 60.8 bits (148), Expect = 2e-10
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
LL EGK KKI+ +P+ + V KD TA +G + + GK + + ++L+F L
Sbjct: 7 QQLLYEGKAKKIYAT-DEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLR 65
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Length = 263
Score = 129 bits (326), Expect = 5e-34
Identities = 72/356 (20%), Positives = 118/356 (33%), Gaps = 119/356 (33%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136
+ + EGK K I +P V+ KD ITA F+
Sbjct: 25 KEKIYEGKAKIIFAT-LNPLEVIQHFKDEITA-----------------------FN--- 57
Query: 137 AAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRN-LSNVTAEGLNQVKLNFTWIAD 195
+ ++ +K + N +S+ + L + T
Sbjct: 58 -----------------------NKKAAIIHEKGILNNYISSFLMKKLIDKGIK-THFIS 93
Query: 196 TLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQET 255
L + L + +T+IPIE V R LA G++ KR F P E
Sbjct: 94 LL-----------NQREQLVKKITIIPIEVVIRNLAAGNFSKRFQIADG-TPFKSPIIEF 141
Query: 256 FFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKI 315
++K+D DP S+ ILS + E++ +K LSL + IL +++ ++ LVD K+
Sbjct: 142 YYKNDELSDPMVSEGHILSFQW--LTNQELEKIKILSLKINNILSELFFNVGIKLVDFKL 199
Query: 316 EFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGID 375
EFG + D
Sbjct: 200 EFGKLHN----------------------------------------------------D 207
Query: 376 NEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIAD 431
+ ++ ++D I D+ RLW + + DK YR EG +V I +
Sbjct: 208 EQSDLFLADEISPDTCRLWDISTNKRL-DKDRYRLNLGNVIEGYREVAHKLNAIPN 262
Score = 61.7 bits (150), Expect = 9e-11
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 1 MSGEFDLTKNVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIAT 60
G + + + EGK K I +P V+ KD ITA + +A + K +
Sbjct: 16 TQGPGSMEN--KEKIYEGKAKIIFAT-LNPLEVIQHFKDEITAFNNKKAAIIHEKGILNN 72
Query: 61 KTNTLVFDILNASENVGDLLIEGKTKKIHLLKSDPNTVVVINK----------DRITAGD 110
++ + L D I K H + ++ K + AG+
Sbjct: 73 YISSFLMKKLI------DKGI-----KTHFISLLNQREQLVKKITIIPIEVVIRNLAAGN 121
Query: 111 GARAHDLKGKAEIATKTNTLVFD-------ILNAAEMSMIKYSEENEYDKI 154
++ + + + +++ + ++ E +KI
Sbjct: 122 FSKRFQIADGTPFKSPIIEFYYKNDELSDPMVSEGHILSFQWLTNQELEKI 172
Score = 34.0 bits (78), Expect = 0.096
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 461 DDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
+D DP S+ ILS + E++ +K LSL + IL
Sbjct: 145 NDELSDPMVSEGHILSFQW--LTNQELEKIKILSLKINNIL 183
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta
structure, csgid, ligase, center for structural G of
infectious diseases; HET: ADP AMP CIT; 1.40A
{Clostridium perfringens}
Length = 238
Score = 126 bits (318), Expect = 4e-33
Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 59/208 (28%)
Query: 208 VSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW 267
++ L + V ++P+E + R +A GS KR G +E Y E +KDD+ DP
Sbjct: 78 LNDRDQLCKKVEIVPLEVIVRNVAAGSMAKRL-GLEEGYELKTTVFELSYKDDSLGDPLI 136
Query: 268 SDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSF 327
+D + +E+ + ++ V EIL++ + N L+D K+EFG G++
Sbjct: 137 NDYHAVGIGA--TTFEELNKIYEITAKVNEILKEAFKKQNINLIDFKLEFG-RYNGEI-- 191
Query: 328 FPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVID 387
+L D I
Sbjct: 192 ------------------------------------LLAD-----------------EIS 198
Query: 388 SDSWRLWPEGKKELMKDKQVYRNLSNVT 415
D+ R W E M + R++ NV
Sbjct: 199 PDTCRFWDATTGEKMDKDRFRRDMGNVI 226
Score = 60.0 bits (146), Expect = 3e-10
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 136
++L EGK KKI+ + V+V KD TA +G + ++ K + + +L+F++LN
Sbjct: 8 LEMLYEGKAKKIYAT-DKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLN 66
Query: 137 AA 138
Sbjct: 67 KE 68
Score = 60.0 bits (146), Expect = 3e-10
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
++L EGK KKI+ + V+V KD TA +G + ++ K + + +L+F++LN
Sbjct: 8 LEMLYEGKAKKIYAT-DKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLN 66
Query: 72 ASENVGDLLIE---GKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLK-------GKA 121
E + +E + + ++ P V+V N + AG A+ L+
Sbjct: 67 -KEGIKTHFVEKLNDRDQLCKKVEIVPLEVIVRN---VAAGSMAKRLGLEEGYELKTTVF 122
Query: 122 EIATKTNTLVFDILNAAEMSMIKYSEENEYDKI 154
E++ K ++L ++N I + E +KI
Sbjct: 123 ELSYKDDSLGDPLINDYHAVGIGATTFEELNKI 155
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 69.5 bits (171), Expect = 3e-14
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPPLDST--GRDVWSSLNLPAGIACSTVTAPSNA 570
++I +AG+SN L + G I CPP + G D++SSL +P+GI+ + V P NA
Sbjct: 61 LYITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALVLEPKNA 120
Query: 571 ALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQ 609
AL AA+I + D I ++ Y + ++D K ++
Sbjct: 121 ALLAARIFSLYDKEIADSVKSYMESNAQKIIEDDSKLKR 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 4e-09
Identities = 82/488 (16%), Positives = 156/488 (31%), Gaps = 138/488 (28%)
Query: 87 KIHLLKSDPNTVVVIN------KDRITAGDGARAHDLKGK----------------AEIA 124
+ LL+ P V+I+ K A D ++ ++ K +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 125 TKTNTLVFDI-----LNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRN----L 175
L++ I + S IK + ++ + L+K K Y N L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--------RRLLKSKP-YENCLLVL 250
Query: 176 SNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSY 235
NV A + NL + R VT L+
Sbjct: 251 LNV-------------QNAKAWNAF-----NLSCKILLTTRFKQ------VTDFLS---- 282
Query: 236 LKRHPGTQECYRFCPPCQETFFKDDANHDPQWSDEQILSANLDNVARDE-VQIMKRLSLV 294
+ T D+ + +L LD +D +++
Sbjct: 283 -----AATTTHISLDHHSMTLTPDEV--------KSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 295 VFEILEKV---------WASLNCVLVDMKIEFGIDN----EGKVSF-----FPQA---PM 333
+ I E + W +NC + IE ++ E + F FP + P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 334 KLYAI-----EVSDCSSMCYKLLE--ILEKVWA----SLNCVLVDMKIEFGIDNEGNI-- 380
L ++ SD + KL + ++EK S+ + +++K++ ++NE +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK--LENEYALHR 447
Query: 381 -LVSDVIDSDSWRLWPEGKKELMKDKQVY----RNLSNV----TAEGLNQVKLNFTWIAD 431
+V ++ L D+ Y +L N+ V L+F ++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 432 TLASVKRPTDNLVVLALGSSSDLPFANK-IDDANHDPQWSDEQILSANLDNVARDEVQIM 490
+ N L + L F I D +DP+ E++++A LD + + E ++
Sbjct: 506 KIRHDSTAW-NASGSILNTLQQLKFYKPYICD--NDPK--YERLVNAILDFLPKIEENLI 560
Query: 491 --KRLSLV 496
K L+
Sbjct: 561 CSKYTDLL 568
Score = 44.1 bits (103), Expect = 1e-04
Identities = 47/350 (13%), Positives = 101/350 (28%), Gaps = 120/350 (34%)
Query: 243 QECYR-FCPPCQETFFKD-DANHDPQWSDEQILSANLDNV--ARDEVQIMKRLSLVVFEI 298
Q Y+ ++ F + D + +D++ ++D V RL F
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWT 70
Query: 299 LEKVWASLNCVLVD--MKIEFG-----IDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLL 351
L + V+ ++I + I E + P ++Y + Y
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMY----IEQRDRLYNDN 123
Query: 352 EILEK--VW-----ASLNCVLVDMKIEFGIDNEG------NILVSDVIDSDSWRLWPEGK 398
++ K V L L++++ + +G + DV S K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--------K 175
Query: 399 KELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASVKRPTDNLVVL-ALGSSSDLPFA 457
+ D +++ W+ L + P L +L L D +
Sbjct: 176 VQCKMDFKIF-------------------WL--NLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 458 NKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAV 517
++ D +++ + E ++RL +KS +N + +
Sbjct: 215 SRSDHSSNIKLRIHS----------IQAE---LRRL---------LKSKP-YENCLLV-- 249
Query: 518 AGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPA-GIACST-VT 565
L +V ++ A ++C +T
Sbjct: 250 ------------------------LL----NVQNAKAWNAFNLSCKILLT 271
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 53.0 bits (128), Expect = 2e-08
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 41/168 (24%)
Query: 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502
++ + +GS SDL +A V I+K V FE+ V
Sbjct: 1 MICIIMGSESDLK--------------------------IAEKAVNILKEFG-VEFEVRV 33
Query: 503 ---------MKSWSSGKNV-VFIAVAGKSNGLGPVISGNTCYPVINCP-PLDSTGRD-VW 550
++ VFIA+AG + L V++ T PVI P G D +
Sbjct: 34 ASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALL 93
Query: 551 SSLNLPAGIACSTVT--APSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
SS+ +P GI +TV NAA+ A +ILA +D I KL Y+ K+
Sbjct: 94 SSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEYREKM 141
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase
subunit; purines, pyrimidines, nucleosides, nucleotides,
lyase; 2.20A {Coxiella burnetii}
Length = 169
Score = 49.1 bits (118), Expect = 4e-07
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCP----PLDSTGRD-VWSSLNLPAGIACSTV--- 564
VFIA AG + L I+ +T PVI P L G D + S++ +P G+ +
Sbjct: 64 VFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLG--GLDALLSTVQMPGGVPVACTAIG 121
Query: 565 -TAPSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQE 610
NAA+ AAQI+A +D I KL +T L K D+ + +
Sbjct: 122 KAGAKNAAILAAQIIALQDKSIAQKLVQQRTAKRETLKKADENLQTQ 168
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 48.1 bits (115), Expect = 1e-06
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSL----NLPAGIACSTVT--A 566
V IA AG + L +++ T PVI P + ++ + SL +P G+ +TV
Sbjct: 71 VIIAGAGGAAHLPGMVASITHLPVIGVP-VKTSTLNGLDSLFSIVQMPGGVPVATVAINN 129
Query: 567 PSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
NA + AA IL + I K++ Y+ ++
Sbjct: 130 AKNAGILAASILGIKYPEIARKVKEYKERM 159
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 47.3 bits (113), Expect = 2e-06
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGRDVWSSL----NLPAGIACSTVT--A 566
V IA AG + L +++ T PVI P + D SL +PAG+ +TV+
Sbjct: 65 VIIAGAGGAAHLPGMVAAATPLPVIGVP-VPLGRLDGLDSLLSIVQMPAGVPVATVSIGG 123
Query: 567 PSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
NA L A ++L + + +++ +Q +L
Sbjct: 124 AGNAGLLAVRMLGAANPQLRARIVAFQDRL 153
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp} PDB: 3opq_A*
Length = 166
Score = 43.8 bits (104), Expect = 3e-05
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTV- 564
V IA AG + L +++ T PV+ P DS + S + +PAGI +T
Sbjct: 63 VIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDS----LLSIVQMPAGIPVATFA 118
Query: 565 ---TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
NAAL AA IL D I L ++ +
Sbjct: 119 IGMAGAKNAALFAASILQHTDINIAKALAEFRAEQ 153
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase,
isomerase,biosynthetic protein; 1.45A {Staphylococcus
aureus subsp}
Length = 163
Score = 43.4 bits (103), Expect = 4e-05
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTV- 564
+ IA AG + L +++ T PVI P +DS + S + +P GI +T
Sbjct: 61 IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDS----LLSIVQMPGGIPVATTA 116
Query: 565 ---TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
NA + AA++L+ ++ + KL Y++ L
Sbjct: 117 IGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSL 151
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 43.4 bits (103), Expect = 5e-05
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTV- 564
V IA AG + L +++ T PVI P LDS + S + +P G+ +TV
Sbjct: 69 VIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDS----LLSIVQMPGGVPVATVA 124
Query: 565 ---TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
+NA L AAQIL I L + + +
Sbjct: 125 IGKAGSTNAGLLAAQILGSFHDDIHDALELRREAI 159
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A
{Bacillus anthracis}
Length = 181
Score = 43.4 bits (103), Expect = 5e-05
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTV- 564
V IA AG + L +++ T PVI P LDS + S + +P G+ +TV
Sbjct: 80 VIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDS----LLSIVQMPGGVPVATVA 135
Query: 565 ---TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
+NA L AAQIL I L + + +
Sbjct: 136 IGKAGSTNAGLLAAQILGSFHDDIHDALELRREAI 170
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer
(ABA) sandwich, rossmann fold, csgid, lyase, structu
genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A
2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 43.1 bits (102), Expect = 6e-05
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTV- 564
V IA G + L +++ T PV+ P +DS ++S + +P GI T+
Sbjct: 70 VIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDS----LYSIVQMPRGIPVGTLA 125
Query: 565 ---TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
+NAAL AAQILA D + +L ++
Sbjct: 126 IGKAGAANAALLAAQILALHDTELAGRLAHWRQSQ 160
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 42.7 bits (101), Expect = 9e-05
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 513 VFIAVAGKSNGLGPVISGNTCYPVINCPP-------LDSTGRDVWSSLNLPAGIACSTV- 564
V IA AG + L + + T PV+ P +DS + S + +P G+ T+
Sbjct: 79 VIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDS----LLSIVQMPGGVPVGTLA 134
Query: 565 ---TAPSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
+ NAAL AA ILA + + ++L ++
Sbjct: 135 IGASGAKNAALLAASILALYNPALAARLETWRALQ 169
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A
{Mycobacterium abscessus}
Length = 301
Score = 43.4 bits (103), Expect = 1e-04
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 364 VLVDMKIEFGIDNEGNILVSD-VIDSDSWRLWP-----EGKKELMKDKQVYRN 410
+L D K EFG+D EGN++++D V DS R W G + DKQ RN
Sbjct: 197 ILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQPGVVQDSFDKQFVRN 249
Score = 41.5 bits (98), Expect = 5e-04
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 214 LARNVTMIPIEWVTRRLATGS----YLKRH--------PGTQECYRFCPPCQETFFK-DD 260
L R + M+P+E V R TGS Y + G E R PP K D
Sbjct: 93 LVRRLDMLPVECVARGYLTGSGLLDYQRTGAVCGHVLPQGLGEASRLDPPLFTPATKADI 152
Query: 261 ANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGID 320
HD ++ V ++ ++ ++ +L D K EFG+D
Sbjct: 153 GEHDMNVDFAAVVGL----VGAVRANQLRDETIKIYTRAAAHALHKGIILADTKFEFGVD 208
Query: 321 NEGKV 325
EG +
Sbjct: 209 IEGNL 213
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase,
phosphoribosylaminoimidazolesuccinocarboxamide (saicar)
SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces
cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A*
2cnv_A* 1obg_A*
Length = 306
Score = 40.7 bits (96), Expect = 0.001
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 365 LVDMKIEFGIDNEGNILVSDVIDS----DSWRLWP-----EGKKELMKDKQVYRN 410
+ D K EFGID + N ++ ++D DS R W G+ + DKQ R+
Sbjct: 213 IADTKFEFGIDEKTNEII--LVDEVLTPDSSRFWNGASYKVGESQDSYDKQFLRD 265
Score = 38.8 bits (91), Expect = 0.004
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 17/129 (13%)
Query: 208 VSPTVFLARNVTMIPIEWVTRRLATGS----YLKRH--------PGTQECYRFCPP-CQE 254
+ L +IP+E + R TGS Y+K G +E F P
Sbjct: 102 LEDRSLLVHKHKLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTP 161
Query: 255 TFFKDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMK 314
+ + HD S Q V D + + L++ ++ + ++ D K
Sbjct: 162 STKAEQGEHDENISPAQAAEL----VGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTK 217
Query: 315 IEFGIDNEG 323
EFGID +
Sbjct: 218 FEFGIDEKT 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 0.001
Identities = 54/296 (18%), Positives = 88/296 (29%), Gaps = 108/296 (36%)
Query: 91 LKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDI---------LNAAEMS 141
L+S ++ +TA A + K T++F I + S
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 142 MIKYSEENEYDKIP-P--GGSGLRKE------------LMKDKQVYRNLSN------VTA 180
+++ S EN + +P P S L +E L KQV +L N V+
Sbjct: 323 ILEDSLENN-EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 181 -----EGLNQVKLNFTWIADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATG-- 233
GLN TL K P+ S F R +++ R L
Sbjct: 382 PPQSLYGLNL----------TLRKAKAPSGLDQSRIPFSER-----KLKFSNRFLPVASP 426
Query: 234 ---SYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW---------------SDEQILSA 275
L P + KD ++ + SD ++LS
Sbjct: 427 FHSHLLV-------------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 276 NL-DNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMK----IEFGIDNEGKVS 326
++ + + I + L V W + K ++FG G S
Sbjct: 474 SISERIVD---CI---IRLPVK------WET----TTQFKATHILDFG---PGGAS 510
Score = 38.9 bits (90), Expect = 0.005
Identities = 92/595 (15%), Positives = 174/595 (29%), Gaps = 215/595 (36%)
Query: 52 LKGKAEIATKTNTLVFDILNASENVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDG 111
L+G +I + L +L ++ K L+K+ ++ + +
Sbjct: 96 LEGN-DI----HALAAKLLQENDT-------TLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 112 A--RAHDLKGKAEIATK-----TNTLVFDILNAAEMSMIKYSEENEYDKIPPGGSGLRKE 164
A RA +G A++ F+ E+ + Y L +
Sbjct: 144 ALFRAVG-EGNAQLVAIFGGQGNTDDYFE-----ELRDL-------YQTYHV----LVGD 186
Query: 165 LMKD-KQVYRNLSNVTAE-------GLNQVKLNFTWIADTLASVKRPTDNLVS-----PT 211
L+K + L T + GLN ++ W+ + S D L+S P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILE----WLEN--PSNTPDKDYLLSIPISCPL 240
Query: 212 VFLARNVTMIPIEWVTRR---LATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWS 268
+ + + + VT + G G
Sbjct: 241 IGVIQLAHYV----VTAKLLGFTPGELRSYLKGATGH----------------------- 273
Query: 269 DEQILSANLDNVAR-DEVQIMKRLSLVVFEILEKVWASLNC-----------VLVDMKIE 316
+ +++A +A D + +L + + C +++ +E
Sbjct: 274 SQGLVTAVA--IAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 317 FGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVL-VDMKIEFGID 375
EG P +PM + +S+ + E ++ N L ++E +
Sbjct: 330 NN---EGV----P-SPM----LSISNLT------QEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 376 NEG--NILVSDVIDSDSWRLWPEGK-KELMKDKQVYRNLSNVTAE-GLNQVKLNFTWIAD 431
N G N++VS G + L + L A GL+Q ++ F
Sbjct: 372 N-GAKNLVVS-------------GPPQSLY---GLNLTLRKAKAPSGLDQSRIPF----- 409
Query: 432 TLASVKRPTDNLVVLALGSSSDLPF-------ANKI---DDANHDPQW------------ 469
S ++ + L + S PF A+ + D ++ +
Sbjct: 410 ---SERKLKFSNRFLPVAS----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 470 ---SDEQILSANL-----DNVARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGKS 521
SD ++LS ++ D + R V+ IL G G +
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF-----G--------PGGA 509
Query: 522 NGLGPVISGNTCYPVINCPPLDSTGRDVWSSLNLPAGIACSTVTAPSNAALAAAQ 576
+GLG + N D TG V I T+ + Q
Sbjct: 510 SGLGVLTHRN----------KDGTGVRV---------IVAGTLDINPDDDYGFKQ 545
Score = 32.3 bits (73), Expect = 0.57
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 17/75 (22%)
Query: 33 VVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN---------------ASENVG 77
++ IN R+ A A + +T LV +I+N A + V
Sbjct: 1809 MIAINPGRVAASFSQEALQ-YVVERVGKRTGWLV-EIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 78 DLLIEGKTKKIHLLK 92
++L K +KI +++
Sbjct: 1867 NVLNFIKLQKIDIIE 1881
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 30.7 bits (68), Expect = 0.50
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 227 TRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDA 261
++ LK+H E + CP C++ F D+
Sbjct: 81 LMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDS 115
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo
sapiens} PDB: 3thm_F*
Length = 156
Score = 30.9 bits (69), Expect = 0.63
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQE-TFFKDDANHDPQ 266
G R C PCQE + D A+ +
Sbjct: 50 GERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSK 84
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D
bond, glycoprotein, membrane, secreted, signal-anchor,
transmembrane, apoptosis; 2.45A {Homo sapiens} PDB:
3mi8_D 3mhd_D
Length = 176
Score = 30.9 bits (69), Expect = 0.68
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
G++++R ++ C PC + N+ +
Sbjct: 28 GTFVQRPC-RRDSPTTCGPCPPRHYTQFWNYLER 60
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 30.5 bits (68), Expect = 0.72
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQWS 268
G+ + ++ C PC F+ D + P
Sbjct: 25 GNGMVSR-CSRSQNTVCRPCGPGFYNDVVSSKPCKP 59
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 31.0 bits (69), Expect = 0.73
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
G + K T+ C C+++ + N P+
Sbjct: 28 GQHAKVFC-TKTSDTVCDSCEDSTYTQLWNWVPE 60
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 31.0 bits (69), Expect = 0.87
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 20/83 (24%)
Query: 203 PTDNLVSPTVFLARNVTMIPIEWVTRRLAT-------------------GSYLKRHPGTQ 243
+ + + L + + ++ + G YL T
Sbjct: 3 SSHHHHHHSSGLVPRGSHMHMQVTLQVTPPCTQERHYEHLGRCCSRCEPGKYLSSKC-TP 61
Query: 244 ECYRFCPPCQETFFKDDANHDPQ 266
C PC + D N + +
Sbjct: 62 TSDSVCLPCGPDEYLDTWNEEDK 84
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 30.6 bits (68), Expect = 0.88
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
G+YLK+H T + C PC + ++ D + +
Sbjct: 26 GTYLKQHC-TAKWKTVCAPCPDHYYTDSWHTSDE 58
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 30.5 bits (68), Expect = 0.92
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
G +K + C PC + N +
Sbjct: 22 GYRVKEAC-GELTGTVCEPCPPGTYIAHLNGLSK 54
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 31.1 bits (69), Expect = 1.1
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW 267
G+Y+ H T R C C F N +
Sbjct: 32 GTYVSEHC-TNTSLRVCSSCPVGTFTRHENGIEKC 65
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 29.9 bits (66), Expect = 1.6
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 233 GSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQ 266
G L T+ C PC E+ F D N +
Sbjct: 24 GQKLVSDC-TEFTETECLPCGESEFLDTWNRETH 56
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein
structure initiative, PSI-2, NYSGXRC, structural
genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9
c.1.9.18
Length = 418
Score = 29.3 bits (66), Expect = 3.8
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 13/52 (25%)
Query: 12 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITA--------GDGARAHDLKGK 55
LI+GK+ ++ +VI+ + I+ D DL+
Sbjct: 13 AGKLIDGKSDQVQ-----SRISIVIDGNIISDIKKGFISSNDFEDYIDLRDH 59
Score = 29.3 bits (66), Expect = 3.8
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 13/52 (25%)
Query: 77 GDLLIEGKTKKIHLLKSDPNTVVVINKDRITA--------GDGARAHDLKGK 120
LI+GK+ ++ +VI+ + I+ D DL+
Sbjct: 13 AGKLIDGKSDQVQ-----SRISIVIDGNIISDIKKGFISSNDFEDYIDLRDH 59
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 28.9 bits (65), Expect = 4.0
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 33/129 (25%)
Query: 427 TWIADTLASVKRPTDNLVVLALGSSSDLPFAN--------KIDD-----------ANHDP 467
+ + SV D L + L F ++D N++
Sbjct: 2 NLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEE 61
Query: 468 QWS------DEQILSANLDNVAR-DEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520
+ L++ L ++ DE+ + ++ LV GK++ ++
Sbjct: 62 HLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKP----TGTLVHDDLLPGKHLYLLSTG-- 115
Query: 521 SNGLGPVIS 529
G+ P +S
Sbjct: 116 -TGMAPFLS 123
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 28.4 bits (64), Expect = 6.2
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 34/129 (26%)
Query: 427 TWIADTLASVKRPTDNLVVLALGSSSDLPFAN--------KIDD-----------ANHDP 467
W+ + V+ TD L L + + LPF +ID + +P
Sbjct: 3 DWVTGKVTKVQNWTDALFSLTV-HAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNP 61
Query: 468 QWS------DEQILSANLDNV-ARDEVQIMKRLSLVVFEILVMKSWSSGKNVVFIAVAGK 520
+ LS L + DEVQ++ + V+ + + +A G
Sbjct: 62 DLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAA----GFFVLDEVPHCETLWMLA-TG- 115
Query: 521 SNGLGPVIS 529
+GP +S
Sbjct: 116 -TAIGPYLS 123
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl
phosphonate derivative of L- arginine, hydrolase; HET:
KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB:
3mtw_A*
Length = 403
Score = 28.4 bits (64), Expect = 7.4
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 11 VGDLLIEGKTKKIHLLKSDPNTVVVINKDRITA--------GDGARAHDLKGK 55
L++ + K N +V++ RIT+ GA A DL G
Sbjct: 7 SAARLLDVASGKYV-----DNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGV 54
Score = 28.4 bits (64), Expect = 7.4
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 76 VGDLLIEGKTKKIHLLKSDPNTVVVINKDRITA--------GDGARAHDLKGK 120
L++ + K N +V++ RIT+ GA A DL G
Sbjct: 7 SAARLLDVASGKYV-----DNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGV 54
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.3 bits (63), Expect = 7.5
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 340 VSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKK 399
+ D S C LE ++ ++ D+ ++V + ID +K
Sbjct: 253 IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF---------LVVINKIDVADEENIKRLEK 303
Query: 400 ELMKDKQVYRNLSNVTAEGLNQVK 423
+ + +S + G++ VK
Sbjct: 304 FVKEKGLNPIKISALKGTGIDLVK 327
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 28.1 bits (63), Expect = 8.5
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 12/48 (25%)
Query: 15 LIEGKTKKIHLLKSDPNTVVVINKDRITA-------GDGARAHDLKGK 55
L++ + ++I I A D+KGK
Sbjct: 13 LLDPDHPDLL-----QGFEILIEDGFIREVSDKPIKSSNAHVIDVKGK 55
Score = 28.1 bits (63), Expect = 8.5
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 12/48 (25%)
Query: 80 LIEGKTKKIHLLKSDPNTVVVINKDRITA-------GDGARAHDLKGK 120
L++ + ++I I A D+KGK
Sbjct: 13 LLDPDHPDLL-----QGFEILIEDGFIREVSDKPIKSSNAHVIDVKGK 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,338,795
Number of extensions: 574027
Number of successful extensions: 1324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 80
Length of query: 615
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 516
Effective length of database: 3,937,614
Effective search space: 2031808824
Effective search space used: 2031808824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)