RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy246
(615 letters)
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 304
Score = 89.4 bits (221), Expect = 4e-20
Identities = 47/287 (16%), Positives = 84/287 (29%), Gaps = 60/287 (20%)
Query: 74 ENVGDLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFD 133
+ + L+ GK + I+ + D T++ + DRI+A D + + K + TK + F
Sbjct: 8 DGILPLVARGKVRDIY--EVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFK 65
Query: 134 ILNAAEMSMIKYSEENEYDKIPPGGSGLRKELMKDKQVYRNLSNVTAEGLNQVKLNFTWI 193
L+ + + + +
Sbjct: 66 FLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQ------------------------- 100
Query: 194 ADTLASVKRPTDNLVSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPC- 252
+ L +IP+E + R TGS K + T + P
Sbjct: 101 --------------LEDRSLLVHKHKLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQG 146
Query: 253 -------QETFFKDDANHDPQWSDEQILSANLDN-VARDEVQIMKRLSLVVFEILEKVWA 304
E F + DE I A V D + + L++ ++ +
Sbjct: 147 LKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAK 206
Query: 305 SLNCVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEV--SDCSSMCYK 349
++ D K EFGID + + EV D S
Sbjct: 207 EKGIIIADTKFEFGIDE--------KTNEIILVDEVLTPDSSRFWNG 245
Score = 53.6 bits (128), Expect = 2e-08
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 13 DLLIEGKTKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
L+ GK + I+ + D T++ + DRI+A D + + K + TK + F L+
Sbjct: 12 PLVARGKVRDIY--EVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLS 68
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 72.2 bits (177), Expect = 2e-15
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 19/172 (11%)
Query: 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502
V + +GS SDLP + +IL + R +FE
Sbjct: 2 RVGIIMGSDSDLPVMKQA-----------AEIL-EEFGIDYEITIVSAHRTPDRMFEY-- 47
Query: 503 MKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTG---RDVWSSLNLPA-- 557
K+ V IA AG + L +++ T PVI P ST ++S + +P
Sbjct: 48 AKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGV 107
Query: 558 GIACSTVTAPSNAALAAAQILAQRDFFIWSKLRMYQTKLYIALNKEDKKSRQ 609
+A + NA + AA IL + I K++ Y+ ++ + ++ ++ Q
Sbjct: 108 PVATVAINNAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQ 159
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
2336]}
Length = 224
Score = 70.5 bits (172), Expect = 3e-14
Identities = 49/229 (21%), Positives = 78/229 (34%), Gaps = 68/229 (29%)
Query: 208 VSPTVFLARNVTMIPIEWVTRRLATGSYLKRHPGTQECYRFCPPCQETFFKDDANHDPQW 267
+ P + M P+E V R GS+++R+ G E P E F KDD HDP
Sbjct: 61 IPPRTLKVIPLKMFPLEVVVRLKKAGSFVRRY-GGAEGEDLPVPLVEFFIKDDERHDPMV 119
Query: 268 SDEQILSANLDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSF 327
+ + L + + + MK ++ + L++ + N L D+K EFG+D +G V
Sbjct: 120 CVDHL--EILGIATKKQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDGNV-- 175
Query: 328 FPQAPMKLYAIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVID 387
VL D I
Sbjct: 176 ------------------------------------VLGD-----------------EIS 182
Query: 388 SDSWRLWPEGKKELMKDKQVYRNLSNVTAEGLNQVKLNFTWIADTLASV 436
D++RL +G+ DK VYR L + + + S+
Sbjct: 183 PDTFRLRKKGEI---FDKDVYRR-------DLGDPLKKYREVLELCRSL 221
Score = 40.9 bits (95), Expect = 2e-04
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 85 TKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILNAAEMSM 142
TK + K + ++ KD ITAGDG + L GK I +T ++ L+ +
Sbjct: 1 TKIV---KVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKT 55
Score = 40.5 bits (94), Expect = 2e-04
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 20 TKKIHLLKSDPNTVVVINKDRITAGDGARAHDLKGKAEIATKTNTLVFDILN 71
TK + K + ++ KD ITAGDG + L GK I +T ++ L+
Sbjct: 1 TKIV---KVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLS 49
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Length = 159
Score = 65.7 bits (160), Expect = 2e-13
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 21/161 (13%)
Query: 443 LVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEILV 502
+V + +GS SD D +L+ L+ + R + +
Sbjct: 4 VVGIIMGSQSDWETMRHADA-----------LLT-ELEIPHETLIVSAHRTPDRLADY-- 49
Query: 503 MKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTGR---DVWSSLNLPAGI 559
++ + V IA AG + L + + T PV+ P + + S + +P G+
Sbjct: 50 ARTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGV 109
Query: 560 ACSTVT----APSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
T+ NAAL AA ILA + + ++L ++
Sbjct: 110 PVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQ 150
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 64.6 bits (157), Expect = 7e-13
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 444 VVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARD-EVQIMKRLSLVVFEILV 502
V + +GS SD + + + V+++
Sbjct: 4 VAIVMGSKSDWATMQFAAEI---------------FEILNVPHHVEVVSAHRTPDKLFSF 48
Query: 503 MKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTG---RDVWSSLNLPAGI 559
+S V IA AG + L +I+ T PV+ P + ++S + +P GI
Sbjct: 49 AESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGI 108
Query: 560 ACSTVTAPS----NAALAAAQILAQRDFFIWSKLRMYQTKL 596
T+ NAAL AAQILA D + +L ++
Sbjct: 109 PVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQ 149
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 62.6 bits (152), Expect = 3e-12
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 21/162 (12%)
Query: 442 NLVVLALGSSSDLPFANKIDDANHDPQWSDEQILSANLDNVARDEVQIMKRLSLVVFEIL 501
+LV + +GS+SD IL L+ +V R +FE
Sbjct: 2 SLVGVIMGSTSDWETMKYA-----------CDILDE-LNIPYEKKVVSAHRTPDYMFEY- 48
Query: 502 VMKSWSSGKNVVFIAVAGKSNGLGPVISGNTCYPVINCPPLDSTG---RDVWSSLNLPAG 558
++ V IA AG + L +++ T PVI P + S + +P G
Sbjct: 49 -AETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGG 107
Query: 559 IACSTVT----APSNAALAAAQILAQRDFFIWSKLRMYQTKL 596
+ +TV +NA L AAQIL I L + + +
Sbjct: 108 VPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAI 149
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor
superfamily member 4, OX40L receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 29.4 bits (66), Expect = 0.13
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 233 GSYLKRH-PGTQECYRFCPPCQETFFKDDANHDP 265
G+ + +Q C PC F+ D + P
Sbjct: 21 GNGMVSRCSRSQN--TVCRPCGPGFYNDVVSSKP 52
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 31.6 bits (71), Expect = 0.15
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 283 DEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFF--PQAPMKLYAIEV 340
DE I + L+ + E++E+ NC+LV GI G + ++ V
Sbjct: 7 DEQAIRRALTRIAHEMIERNKGMNNCILV------GIKTRGIYLAKRLAERIEQIEGNPV 60
Query: 341 SDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDS 388
+ + L K ++ ++ I I ++ ILV DV+ +
Sbjct: 61 TVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYT 108
>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi
[TaxId: 5693]}
Length = 184
Score = 30.0 bits (67), Expect = 0.60
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 3/112 (2%)
Query: 277 LDNVARDEVQIMKRLSLVVFEILEKVWASLNCVLVDMKIEFGIDNEGKVSFFPQAPMKLY 336
+ + E +I R+ V I + V+ + + + F L
Sbjct: 4 AEKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFM-FTADLCRALC 62
Query: 337 AIEVSDCSSMCYKLLEILEKVWASLNCVLVDMKIEFGIDNEGNILVSDVIDS 388
V M + + + S V + + I+ ++V D++D+
Sbjct: 63 DFNVPVR--MEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDT 112
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 28.1 bits (61), Expect = 3.0
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 374 IDNEGNILVSDVIDSDSWRLWPEGKKE 400
+G I V++ + + P+G ++
Sbjct: 35 SAPDGTIFVTNHEVGEIVSITPDGNQQ 61
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 27.3 bits (59), Expect = 5.7
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 306 LNCVLVDMKIEFGIDNEGKVSFFPQAPMKLYAIEVSDCSSMCYKLLEILE-------KVW 358
++++ ++ + Y + V++ + +I KVW
Sbjct: 158 FTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW 217
Query: 359 ASLNCVLVDMKIEFGIDNEGNILVSDVIDSDSWRLWPEGKKELMKDKQVYRNLSNVT 415
+ D + N+LV++ S P+G + M+ + + SN+
Sbjct: 218 GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,254,971
Number of extensions: 106488
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 20
Length of query: 615
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,158,166
Effective search space: 606878984
Effective search space used: 606878984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)