Query psy2460
Match_columns 83
No_of_seqs 123 out of 1040
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 16:52:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 99.8 1.1E-20 2.4E-25 148.8 5.1 80 1-82 27-111 (571)
2 PHA02713 hypothetical protein; 99.8 5E-20 1.1E-24 144.2 5.4 77 1-82 16-100 (557)
3 PHA02790 Kelch-like protein; P 99.8 4.5E-19 9.8E-24 136.3 3.9 77 3-83 15-98 (480)
4 PF00651 BTB: BTB/POZ domain; 99.7 2.6E-17 5.7E-22 102.3 3.4 80 1-82 1-88 (111)
5 PHA03098 kelch-like protein; P 99.7 8.4E-17 1.8E-21 123.6 5.8 73 3-82 3-82 (534)
6 KOG4350|consensus 99.5 7.3E-15 1.6E-19 113.7 4.6 75 2-78 36-115 (620)
7 smart00225 BTB Broad-Complex, 99.5 2.1E-13 4.6E-18 79.9 6.1 69 12-82 1-74 (90)
8 KOG2075|consensus 99.2 1.5E-11 3.2E-16 96.0 5.0 79 3-81 107-193 (521)
9 KOG4591|consensus 98.7 2.6E-08 5.7E-13 71.8 4.4 72 3-77 59-136 (280)
10 KOG0783|consensus 98.2 4.4E-07 9.5E-12 75.5 1.3 55 8-64 556-622 (1267)
11 KOG4682|consensus 97.8 1.3E-05 2.8E-10 62.4 2.0 75 2-79 61-144 (488)
12 KOG2838|consensus 97.4 0.00013 2.9E-09 54.9 3.1 72 8-81 128-209 (401)
13 KOG2838|consensus 97.1 0.00023 5E-09 53.7 1.9 55 22-76 261-331 (401)
14 KOG0783|consensus 97.1 8E-05 1.7E-09 62.5 -0.8 42 8-51 708-750 (1267)
15 KOG1987|consensus 93.5 0.0092 2E-07 43.0 -1.8 42 22-63 110-151 (297)
16 KOG0511|consensus 89.5 0.32 6.9E-06 38.4 2.6 30 22-52 301-330 (516)
17 PF02214 BTB_2: BTB/POZ domain 86.2 0.21 4.5E-06 30.3 -0.1 50 13-65 1-54 (94)
18 PF03931 Skp1_POZ: Skp1 family 84.1 2.3 5.1E-05 24.2 3.7 48 13-64 3-50 (62)
19 KOG0511|consensus 81.8 0.7 1.5E-05 36.5 1.1 29 12-42 151-180 (516)
20 smart00512 Skp1 Found in Skp1 80.5 8.5 0.00018 23.7 5.6 43 21-64 11-54 (104)
21 KOG2716|consensus 77.1 4.8 0.00011 29.3 4.1 50 13-64 7-57 (230)
22 KOG3473|consensus 66.0 7.8 0.00017 25.2 2.8 48 16-64 21-70 (112)
23 KOG3342|consensus 56.4 8.5 0.00018 26.9 1.8 16 13-30 84-100 (180)
24 KOG2714|consensus 55.5 23 0.0005 28.3 4.2 49 13-64 13-65 (465)
25 KOG3863|consensus 51.4 3 6.6E-05 34.2 -1.2 37 2-45 6-42 (604)
26 PF11822 DUF3342: Domain of un 32.1 76 0.0017 24.2 3.7 60 21-81 13-80 (317)
27 PF01848 HOK_GEF: Hok/gef fami 21.2 96 0.0021 16.8 1.9 20 5-26 20-39 (43)
28 PF05391 Lsm_interact: Lsm int 20.5 60 0.0013 15.2 0.9 8 36-43 13-20 (21)
29 PRK09738 small toxic polypepti 20.3 98 0.0021 17.5 1.9 22 4-27 24-45 (52)
No 1
>KOG4441|consensus
Probab=99.82 E-value=1.1e-20 Score=148.79 Aligned_cols=80 Identities=28% Similarity=0.291 Sum_probs=75.4
Q ss_pred ChhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460 1 MKFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL 75 (83)
Q Consensus 1 m~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~ 75 (83)
||.||+.+.+|||++.+++ ++|+|||+||||+||||++||++++.|+.++++.+.+|+++++-. |++++.|++
T Consensus 27 l~~lr~~~~lcDv~L~v~~--~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~ 104 (571)
T KOG4441|consen 27 LNELREEGLLCDVTLLVGD--REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISE 104 (571)
T ss_pred HHHHHHhCCCceEEEEECC--eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEech
Confidence 6889999999999999999 999999999999999999999999999999999999999887421 999999999
Q ss_pred cchhhhh
Q psy2460 76 QNEAKLF 82 (83)
Q Consensus 76 ~~~~~~~ 82 (83)
+|||+|+
T Consensus 105 ~nVq~ll 111 (571)
T KOG4441|consen 105 DNVQELL 111 (571)
T ss_pred HhHHHHH
Confidence 9999986
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.80 E-value=5e-20 Score=144.16 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=68.8
Q ss_pred ChhhhcCCCCccEEEEeC-CcceeEehhHHHHhhhcHHHHHHhcCCCCCCC-CCCCCCCCCCHHHH------hhcCCccc
Q psy2460 1 MKFLASMPELCDVTFLVG-DTREPVCAVKAVLAARSRVFHKMLYSAPSPQR-KKDPPPKENKLRLF------LKRSSEPL 72 (83)
Q Consensus 1 m~~l~~~~~~~Dv~~~v~-~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~-~~~v~i~dv~~~~f------~~~~~~~~ 72 (83)
|+.||+++.+|||++.|+ + ++|+|||+||||+|+||++||+++|.|.. +++|.|+++++++| + |++.
T Consensus 16 l~~lr~~~~l~DV~L~v~~~--~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~-Yt~~-- 90 (557)
T PHA02713 16 ISNLLDDDILCDVIITIGDG--EEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYL-YNRH-- 90 (557)
T ss_pred HHHHHhCCCCCCEEEEeCCC--CEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHh-cCCC--
Confidence 578999999999999997 7 89999999999999999999999999864 78899999998874 4 5554
Q ss_pred ccccchhhhh
Q psy2460 73 LNLQNEAKLF 82 (83)
Q Consensus 73 l~~~~~~~~~ 82 (83)
|+.+|+++|+
T Consensus 91 i~~~nv~~ll 100 (557)
T PHA02713 91 ISSMNVIDVL 100 (557)
T ss_pred CCHHHHHHHH
Confidence 7999999986
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.75 E-value=4.5e-19 Score=136.33 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=65.5
Q ss_pred hhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC--CCCCHHHHh---h--cCCcccccc
Q psy2460 3 FLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP--KENKLRLFL---K--RSSEPLLNL 75 (83)
Q Consensus 3 ~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i--~dv~~~~f~---~--~~~~~~l~~ 75 (83)
.|+.++++|||++.+|+ +|+|||+||||+|||||+||.++|.|+.+ .+.+ .+++++++- . ||+++.|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~ 90 (480)
T PHA02790 15 ALSMTKKFKTIIEAIGG---NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS 90 (480)
T ss_pred HHHhhhhhceEEEEcCc---EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec
Confidence 47789999999888776 89999999999999999999999999854 4544 489887642 1 999999999
Q ss_pred cchhhhhC
Q psy2460 76 QNEAKLFQ 83 (83)
Q Consensus 76 ~~~~~~~~ 83 (83)
+|||+|++
T Consensus 91 ~nV~~ll~ 98 (480)
T PHA02790 91 HNVVNLLR 98 (480)
T ss_pred ccHHHHHH
Confidence 99999873
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.68 E-value=2.6e-17 Score=102.31 Aligned_cols=80 Identities=24% Similarity=0.249 Sum_probs=64.7
Q ss_pred ChhhhcCCCCccEEEEeC-CcceeEehhHHHHhhhcHHHHHHhcCC-CCCCCCCCCCCCCCCHHHHhh-----cCCcccc
Q psy2460 1 MKFLASMPELCDVTFLVG-DTREPVCAVKAVLAARSRVFHKMLYSA-PSPQRKKDPPPKENKLRLFLK-----RSSEPLL 73 (83)
Q Consensus 1 m~~l~~~~~~~Dv~~~v~-~~~~~~~aHk~iLaa~S~~F~~mf~~~-~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l 73 (83)
|+++++++.+||++|.++ + ++|+|||.||+++|+||++||.+. +.+....++.++++++++|.. |+.+..+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~--~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~ 78 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDG--KTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEI 78 (111)
T ss_dssp HHHHHHHTTS--EEEEETTT--EEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEE
T ss_pred ChHHHcCCCCCCEEEEECCC--EEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccC
Confidence 578999999999999999 7 999999999999999999999987 455555678889999887532 8888888
Q ss_pred c-ccchhhhh
Q psy2460 74 N-LQNEAKLF 82 (83)
Q Consensus 74 ~-~~~~~~~~ 82 (83)
+ .+++.+++
T Consensus 79 ~~~~~~~~ll 88 (111)
T PF00651_consen 79 NSDENVEELL 88 (111)
T ss_dssp E-TTTHHHHH
T ss_pred CHHHHHHHHH
Confidence 7 77777664
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.67 E-value=8.4e-17 Score=123.58 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=64.3
Q ss_pred hhhcCCCCccEEEEe--CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccc
Q psy2460 3 FLASMPELCDVTFLV--GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNL 75 (83)
Q Consensus 3 ~l~~~~~~~Dv~~~v--~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~ 75 (83)
.+. ++.+|||++.+ +| ++|+|||+|||++|+||++||.++|. +.+|.+++ ++++|-. |++++.|+.
T Consensus 3 ~~~-~~~~~Dv~l~~~~~~--~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~ 75 (534)
T PHA03098 3 SFE-LQKFCDESIIIVNGG--GIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS 75 (534)
T ss_pred ccc-cCCCCCEEEEEEcCC--EEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH
Confidence 444 88999999998 77 99999999999999999999999988 56788888 8887531 899999999
Q ss_pred cchhhhh
Q psy2460 76 QNEAKLF 82 (83)
Q Consensus 76 ~~~~~~~ 82 (83)
+|+++|+
T Consensus 76 ~~~~~ll 82 (534)
T PHA03098 76 NNVKDIL 82 (534)
T ss_pred HHHHHHH
Confidence 9999886
No 6
>KOG4350|consensus
Probab=99.53 E-value=7.3e-15 Score=113.68 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=65.3
Q ss_pred hhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHh---h--cCCccccccc
Q psy2460 2 KFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFL---K--RSSEPLLNLQ 76 (83)
Q Consensus 2 ~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~---~--~~~~~~l~~~ 76 (83)
..|+-+.+++||+|+|++ .+|+|||+|||+||.|||+|+.++|.|+.+..+++++-..++|- . |+++..|+..
T Consensus 36 ~~l~~~e~y~DVtfvve~--~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVED--TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred HHHhhcCcccceEEEEec--cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccc
Confidence 356778899999999999 99999999999999999999999999999999999888888872 2 7888777544
Q ss_pred ch
Q psy2460 77 NE 78 (83)
Q Consensus 77 ~~ 78 (83)
..
T Consensus 114 ~e 115 (620)
T KOG4350|consen 114 EE 115 (620)
T ss_pred hH
Confidence 33
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.46 E-value=2.1e-13 Score=79.89 Aligned_cols=69 Identities=28% Similarity=0.249 Sum_probs=58.9
Q ss_pred cEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCcccccccchhhhh
Q psy2460 12 DVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNLQNEAKLF 82 (83)
Q Consensus 12 Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~~~~~~~~ 82 (83)
|+++.+|+ +.+++||.+|+++|+||++||.+++.+.....+.++|+++++|.. |+.++.++..++.+++
T Consensus 1 dv~i~v~~--~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~ 74 (90)
T smart00225 1 DVTLVVGG--KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELL 74 (90)
T ss_pred CeEEEECC--EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHH
Confidence 78999999 999999999999999999999988887777888889999998742 8888888777766553
No 8
>KOG2075|consensus
Probab=99.21 E-value=1.5e-11 Score=96.00 Aligned_cols=79 Identities=28% Similarity=0.297 Sum_probs=68.8
Q ss_pred hhhcCCCCccEEEEeCCc---ceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCccccc
Q psy2460 3 FLASMPELCDVTFLVGDT---REPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLN 74 (83)
Q Consensus 3 ~l~~~~~~~Dv~~~v~~~---~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~ 74 (83)
.|++++..+|+.|+||+. .+.+||||.|||..|.+|.+||.+++.+....++.+|||+|.+|+. |+.++.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~ 186 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA 186 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence 477899999999999852 4799999999999999999999999999978899999999998754 88888887
Q ss_pred ccchhhh
Q psy2460 75 LQNEAKL 81 (83)
Q Consensus 75 ~~~~~~~ 81 (83)
-+|+=.+
T Consensus 187 ~dtvi~t 193 (521)
T KOG2075|consen 187 ADTVITT 193 (521)
T ss_pred HHHHHHH
Confidence 7776444
No 9
>KOG4591|consensus
Probab=98.67 E-value=2.6e-08 Score=71.83 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=54.6
Q ss_pred hhhcCCCCccEEEEeCCc-ceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHHhh-----cCCccccccc
Q psy2460 3 FLASMPELCDVTFLVGDT-REPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLFLK-----RSSEPLLNLQ 76 (83)
Q Consensus 3 ~l~~~~~~~Dv~~~v~~~-~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f~~-----~~~~~~l~~~ 76 (83)
.|++.++++|++|+++|+ .+.++|||.||||||++.. |.++-.| ..++....|+++++|.. |+-++.+.++
T Consensus 59 dL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 59 DLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred HHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeeccccccccc
Confidence 477899999999999864 5899999999999999765 3333333 23456668999999843 7777777665
Q ss_pred c
Q psy2460 77 N 77 (83)
Q Consensus 77 ~ 77 (83)
.
T Consensus 136 D 136 (280)
T KOG4591|consen 136 D 136 (280)
T ss_pred h
Confidence 4
No 10
>KOG0783|consensus
Probab=98.21 E-value=4.4e-07 Score=75.51 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=43.8
Q ss_pred CCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCC------------CCCCCCCCCCHHHH
Q psy2460 8 PELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQR------------KKDPPPKENKLRLF 64 (83)
Q Consensus 8 ~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~------------~~~v~i~dv~~~~f 64 (83)
..+.||+|.||+ +.|+|||.||++||++||++|......+. ...+.+.+|.|.+|
T Consensus 556 ds~hDVtf~vg~--~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mf 622 (1267)
T KOG0783|consen 556 DSFHDVTFYVGT--SMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMF 622 (1267)
T ss_pred cccceEEEEecC--eecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHH
Confidence 346799999999 99999999999999999999987554432 23344567888876
No 11
>KOG4682|consensus
Probab=97.76 E-value=1.3e-05 Score=62.42 Aligned_cols=75 Identities=15% Similarity=-0.031 Sum_probs=61.3
Q ss_pred hhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC----CCCCHHHHhh-----cCCccc
Q psy2460 2 KFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP----KENKLRLFLK-----RSSEPL 72 (83)
Q Consensus 2 ~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i----~dv~~~~f~~-----~~~~~~ 72 (83)
+.|+.+++-+||++.+=| ++++-||.-|. .|+||.+||.|.++|+.++.|.+ |-|+..+|.. |.++++
T Consensus 61 q~lf~q~enSDv~l~alg--~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 61 QNLFLQGENSDVILEALG--FEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHhcCCCcceehhhcc--ceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 457789999999999989 99999998886 58999999999999998876654 3356665533 999999
Q ss_pred ccccchh
Q psy2460 73 LNLQNEA 79 (83)
Q Consensus 73 l~~~~~~ 79 (83)
|+++.+.
T Consensus 138 I~l~dv~ 144 (488)
T KOG4682|consen 138 IKLSDVV 144 (488)
T ss_pred ccHHHHH
Confidence 9887754
No 12
>KOG2838|consensus
Probab=97.41 E-value=0.00013 Score=54.91 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCC--CCCC---HHHHhh--cCCccc---ccccc
Q psy2460 8 PELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPP--KENK---LRLFLK--RSSEPL---LNLQN 77 (83)
Q Consensus 8 ~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i--~dv~---~~~f~~--~~~~~~---l~~~~ 77 (83)
+...|+-+.... ..|+|||++||+|||+|+.+..............+ -+++ .++|++ |+.+-. +..||
T Consensus 128 k~c~dldiiFke--TcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn 205 (401)
T KOG2838|consen 128 KVCGDLDIIFKE--TCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQN 205 (401)
T ss_pred eeeccceeeeee--ccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCch
Confidence 334588888888 89999999999999999999876543322222222 2233 345665 555544 45566
Q ss_pred hhhh
Q psy2460 78 EAKL 81 (83)
Q Consensus 78 ~~~~ 81 (83)
++=|
T Consensus 206 ~diL 209 (401)
T KOG2838|consen 206 SDIL 209 (401)
T ss_pred HHHH
Confidence 5543
No 13
>KOG2838|consensus
Probab=97.14 E-value=0.00023 Score=53.66 Aligned_cols=55 Identities=31% Similarity=0.304 Sum_probs=36.3
Q ss_pred eeEehhHHHHhhhcHHHHHHhcCCCCCC---------CCCCCCCCC-CCHH----HHhh--cCCccccccc
Q psy2460 22 EPVCAVKAVLAARSRVFHKMLYSAPSPQ---------RKKDPPPKE-NKLR----LFLK--RSSEPLLNLQ 76 (83)
Q Consensus 22 ~~~~aHk~iLaa~S~~F~~mf~~~~~e~---------~~~~v~i~d-v~~~----~f~~--~~~~~~l~~~ 76 (83)
.++.|||+|.|+||++||.++....++. +.+++++.+ |-|. +|++ |+-++.+++.
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~ 331 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLA 331 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhc
Confidence 5899999999999999999996543332 234444433 2333 4555 7766666544
No 14
>KOG0783|consensus
Probab=97.13 E-value=8e-05 Score=62.49 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCCccEEEEe-CCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCC
Q psy2460 8 PELCDVTFLV-GDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK 51 (83)
Q Consensus 8 ~~~~Dv~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~ 51 (83)
++.-|+.+.. +| +.++||||+|+||++||..||..-+.|+..
T Consensus 708 ~e~~d~~i~~KDG--kvl~aHkc~L~aRlEYF~smf~~~w~E~sS 750 (1267)
T KOG0783|consen 708 EETMDTVIKLKDG--KVLKAHKCFLSARLEYFSSMFQFVWMESSS 750 (1267)
T ss_pred ccceeEEEEecCC--cCcccceeEeeeHHHHHHHHHHHHHhhhcc
Confidence 3444555555 44 889999999999999999999988887664
No 15
>KOG1987|consensus
Probab=93.53 E-value=0.0092 Score=42.97 Aligned_cols=42 Identities=33% Similarity=0.186 Sum_probs=35.1
Q ss_pred eeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHH
Q psy2460 22 EPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRL 63 (83)
Q Consensus 22 ~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~ 63 (83)
..+.+|+++++++|++|++|+.....+...+.+.+.|..++.
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~ 151 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEV 151 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhccccccccccchhh
Confidence 569999999999999999999988777766666777776554
No 16
>KOG0511|consensus
Probab=89.52 E-value=0.32 Score=38.39 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=24.9
Q ss_pred eeEehhHHHHhhhcHHHHHHhcCCCCCCCCC
Q psy2460 22 EPVCAVKAVLAARSRVFHKMLYSAPSPQRKK 52 (83)
Q Consensus 22 ~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~ 52 (83)
...|||++++. |+.||..||.|+..|+..+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n 330 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVN 330 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCC
Confidence 45999999986 5789999999999986533
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=86.17 E-value=0.21 Score=30.27 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=36.6
Q ss_pred EEEEeCCcceeEehhHHHHh-hhcHHHHHHhcCC---CCCCCCCCCCCCCCCHHHHh
Q psy2460 13 VTFLVGDTREPVCAVKAVLA-ARSRVFHKMLYSA---PSPQRKKDPPPKENKLRLFL 65 (83)
Q Consensus 13 v~~~v~~~~~~~~aHk~iLa-a~S~~F~~mf~~~---~~e~~~~~v~i~dv~~~~f~ 65 (83)
|+|-||| +.|..-+..|. ....+|.+|+.+. ......+.+-| |=+|+.|-
T Consensus 1 V~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~ 54 (94)
T PF02214_consen 1 VRLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFE 54 (94)
T ss_dssp EEEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHH
T ss_pred CEEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhh
Confidence 6789999 99999999998 6677999999864 22234445554 77888874
No 18
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=84.15 E-value=2.3 Score=24.18 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=32.1
Q ss_pred EEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCCCCCCCCCCCCCCCHHHH
Q psy2460 13 VTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPKENKLRLF 64 (83)
Q Consensus 13 v~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~e~~~~~v~i~dv~~~~f 64 (83)
|+++.. +|+.|.+.+.++. .|..++.|+.+...+.. .+++++|+.+++
T Consensus 3 v~L~Ss-Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L 50 (62)
T PF03931_consen 3 VKLVSS-DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRIL 50 (62)
T ss_dssp EEEEET-TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHH
T ss_pred EEEEcC-CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHH
Confidence 444442 2489999886654 89999999975333222 677889987765
No 19
>KOG0511|consensus
Probab=81.82 E-value=0.7 Score=36.54 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=19.9
Q ss_pred cEEEEe-CCcceeEehhHHHHhhhcHHHHHHh
Q psy2460 12 DVTFLV-GDTREPVCAVKAVLAARSRVFHKML 42 (83)
Q Consensus 12 Dv~~~v-~~~~~~~~aHk~iLaa~S~~F~~mf 42 (83)
|++|.. .| +-|-|||..|++||.+|..-+
T Consensus 151 di~f~~q~g--~~f~ahkfll~arSs~~~~k~ 180 (516)
T KOG0511|consen 151 DIDFLQQEG--ANFDAHKFLLEARSSNYFPKD 180 (516)
T ss_pred chHHHhhcc--ccccHHHHHHHhhhcccCchh
Confidence 777665 44 677788888888777765444
No 20
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=80.54 E-value=8.5 Score=23.74 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=31.6
Q ss_pred ceeEehhHHHHhhhcHHHHHHhcCCCCCC-CCCCCCCCCCCHHHH
Q psy2460 21 REPVCAVKAVLAARSRVFHKMLYSAPSPQ-RKKDPPPKENKLRLF 64 (83)
Q Consensus 21 ~~~~~aHk~iLaa~S~~F~~mf~~~~~e~-~~~~v~i~dv~~~~f 64 (83)
|.+|.+.+.+. ..|..++.|+.+..... ....+++++|+..++
T Consensus 11 g~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L 54 (104)
T smart00512 11 GEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKIL 54 (104)
T ss_pred CCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHH
Confidence 48999999866 68999999997633222 225788899987654
No 21
>KOG2716|consensus
Probab=77.15 E-value=4.8 Score=29.26 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=37.4
Q ss_pred EEEEeCCcceeEehhHHHHhhhcHHHHHHhcCCCC-CCCCCCCCCCCCCHHHH
Q psy2460 13 VTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPS-PQRKKDPPPKENKLRLF 64 (83)
Q Consensus 13 v~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~~~-e~~~~~v~i~dv~~~~f 64 (83)
|.+-||| ..|..+|.-|..-.-+|++|+..++. +........-|=+|.-|
T Consensus 7 vkLnvGG--~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF 57 (230)
T KOG2716|consen 7 VKLNVGG--TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHF 57 (230)
T ss_pred EEEecCC--eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHH
Confidence 5578999 99999999999999999999988764 22332333336677754
No 22
>KOG3473|consensus
Probab=66.00 E-value=7.8 Score=25.18 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=33.9
Q ss_pred EeCCcceeEehhHHHHhhhcHHHHHHhcCC--CCCCCCCCCCCCCCCHHHH
Q psy2460 16 LVGDTREPVCAVKAVLAARSRVFHKMLYSA--PSPQRKKDPPPKENKLRLF 64 (83)
Q Consensus 16 ~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~--~~e~~~~~v~i~dv~~~~f 64 (83)
.|.+++.+|-..| -+|.-|+-.|+||.+. ..+..++++..+|++.-+.
T Consensus 21 LvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiL 70 (112)
T KOG3473|consen 21 LVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHIL 70 (112)
T ss_pred eecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEeccchHHHH
Confidence 3434346666544 5688899999999864 4556778899999986543
No 23
>KOG3342|consensus
Probab=56.37 E-value=8.5 Score=26.92 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.0
Q ss_pred EEEEeCCcceeEe-hhHHH
Q psy2460 13 VTFLVGDTREPVC-AVKAV 30 (83)
Q Consensus 13 v~~~v~~~~~~~~-aHk~i 30 (83)
|+|.++| +++| +||+|
T Consensus 84 vVf~veg--R~IPiVHRvi 100 (180)
T KOG3342|consen 84 VVFKVEG--REIPIVHRVI 100 (180)
T ss_pred EEEEECC--ccCchhHHHH
Confidence 4568999 9999 79887
No 24
>KOG2714|consensus
Probab=55.50 E-value=23 Score=28.33 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=34.4
Q ss_pred EEEEeCCcceeEehhHHHHhhh--cHHHHHHhcCCCCCCCCCC--CCCCCCCHHHH
Q psy2460 13 VTFLVGDTREPVCAVKAVLAAR--SRVFHKMLYSAPSPQRKKD--PPPKENKLRLF 64 (83)
Q Consensus 13 v~~~v~~~~~~~~aHk~iLaa~--S~~F~~mf~~~~~e~~~~~--v~i~dv~~~~f 64 (83)
|.|-||| +.|..-+.-|+-. =.+|-+++.+.+.....+. +-| |=+|+.|
T Consensus 13 V~lNVGG--riF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlF 65 (465)
T KOG2714|consen 13 VKLNVGG--RIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLF 65 (465)
T ss_pred EEEecCc--eEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHH
Confidence 5677999 9999888777544 5899999987765544333 333 6677766
No 25
>KOG3863|consensus
Probab=51.44 E-value=3 Score=34.24 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred hhhhcCCCCccEEEEeCCcceeEehhHHHHhhhcHHHHHHhcCC
Q psy2460 2 KFLASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSA 45 (83)
Q Consensus 2 ~~l~~~~~~~Dv~~~v~~~~~~~~aHk~iLaa~S~~F~~mf~~~ 45 (83)
+.-|....+||++..+.+ +.|.||+ +|.||..-..|.
T Consensus 6 ~~qr~~~~~~~~~~~~~~--~~f~~~~-----~~e~~~~~~~G~ 42 (604)
T KOG3863|consen 6 NDQRKKDVLCDVTAFVER--QGFRAHR-----CSEYFTSRIVGQ 42 (604)
T ss_pred cccccccccchhHHHHhc--cccccee-----ccchhhhhhccc
Confidence 345667789999999999 9999999 899999988764
No 26
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=32.09 E-value=76 Score=24.25 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=40.9
Q ss_pred ceeEehhHHHHhhhcHHHHHHhcCCCCC-CCCCCCCCCCC--CHHHHh----h-cCCcccccccchhhh
Q psy2460 21 REPVCAVKAVLAARSRVFHKMLYSAPSP-QRKKDPPPKEN--KLRLFL----K-RSSEPLLNLQNEAKL 81 (83)
Q Consensus 21 ~~~~~aHk~iLaa~S~~F~~mf~~~~~e-~~~~~v~i~dv--~~~~f~----~-~~~~~~l~~~~~~~~ 81 (83)
++.|.|.+-+|-.-=.||+..+.....+ ++..+++| -| +..+|- | .+..|.|+..||-.|
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idi-sVhCDv~iF~WLm~yv~~~~p~l~~~NvvsI 80 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDI-SVHCDVHIFEWLMRYVKGEPPSLTPSNVVSI 80 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcce-EEecChhHHHHHHHHhhcCCCcCCcCcEEEe
Confidence 5799999999999999999999652222 22334444 11 455552 1 567888998887655
No 27
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=21.22 E-value=96 Score=16.81 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.6
Q ss_pred hcCCCCccEEEEeCCcceeEeh
Q psy2460 5 ASMPELCDVTFLVGDTREPVCA 26 (83)
Q Consensus 5 ~~~~~~~Dv~~~v~~~~~~~~a 26 (83)
...+.+|.+.++-|+ .++.|
T Consensus 20 l~r~sLCEl~i~~g~--~evaA 39 (43)
T PF01848_consen 20 LTRDSLCELRIKDGN--TEVAA 39 (43)
T ss_pred HhccCcEEEEEecCC--EEEEE
Confidence 456789999999999 88876
No 28
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=20.55 E-value=60 Score=15.17 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=5.7
Q ss_pred HHHHHHhc
Q psy2460 36 RVFHKMLY 43 (83)
Q Consensus 36 ~~F~~mf~ 43 (83)
.=||+||.
T Consensus 13 ddFrkmfl 20 (21)
T PF05391_consen 13 DDFRKMFL 20 (21)
T ss_pred HHHHHHHc
Confidence 45888884
No 29
>PRK09738 small toxic polypeptide; Provisional
Probab=20.26 E-value=98 Score=17.54 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=17.4
Q ss_pred hhcCCCCccEEEEeCCcceeEehh
Q psy2460 4 LASMPELCDVTFLVGDTREPVCAV 27 (83)
Q Consensus 4 l~~~~~~~Dv~~~v~~~~~~~~aH 27 (83)
+...+.+|++.+.-|+ .++.|.
T Consensus 24 ~l~r~sLCEl~i~~g~--~evaA~ 45 (52)
T PRK09738 24 YLTRKSLCELRYRDGD--REVAAF 45 (52)
T ss_pred HHccCCceEEEEecCC--EEEEEE
Confidence 3456789999999999 887763
Done!