RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2460
(83 letters)
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 46.8 bits (112), Expect = 2e-08
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
D V + A KA+LAARS VF M
Sbjct: 24 RFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEH 57
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 45.3 bits (108), Expect = 5e-08
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 9 ELCDVTFLVGDTRE--PVCAVKAVLAARSRVFHKMLYS 44
+ DV F+VG V A K VLA S VF+ M Y
Sbjct: 7 LMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYG 44
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 43.8 bits (104), Expect = 5e-07
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
D V + A KA+LAARS VF M
Sbjct: 33 RFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEH 66
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 43.7 bits (103), Expect = 8e-07
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSA 45
D V + A KA+LAARS VF M
Sbjct: 173 RFTDCCLCVAG--QEFQAHKAILAARSPVFSAMFEHE 207
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 38.7 bits (91), Expect = 2e-05
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
LCDV +V A + VLA S++F + +
Sbjct: 27 TLCDVVIMVDSQEFH--AHRTVLACTSKMFEILFHR 60
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 38.4 bits (90), Expect = 2e-05
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
CDVT +V D + A K +L+A S FH++
Sbjct: 30 LFCDVTVIVEDRKFR--AHKNILSASSTYFHQLFSV 63
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 37.5 bits (88), Expect = 5e-05
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYS 44
LCDV LV P ++VLAA S+ F K+ S
Sbjct: 24 LLCDVVILVEGREFP--THRSVLAACSQYFKKLFTS 57
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 37.2 bits (87), Expect = 6e-05
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPS 47
LCD TF+V A KAVLAA S F +
Sbjct: 26 LLCDCTFVVDGVHFK--AHKAVLAACSEYFKMLFVDQKD 62
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 37.2 bits (87), Expect = 7e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK 51
LCD T ++G+ + A + VLA+ S F + S
Sbjct: 21 FLCDCTIVIGEFQFK--AHRNVLASFSEYFGAIYRSTSENNVF 61
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 37.2 bits (87), Expect = 8e-05
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKK 52
LCDVT +V A +AVLAA S F + L
Sbjct: 31 ILCDVTLIVERKEFR--AHRAVLAACSEYFWQALVGQTKNDLVV 72
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 36.8 bits (86), Expect = 9e-05
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
LCDVT V R A ++VLAA S FH
Sbjct: 28 VLCDVTIFVEGQRFR--AHRSVLAACSSYFHSR 58
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 36.8 bits (86), Expect = 1e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
L DV +V + A K VL A S +F+ +
Sbjct: 28 ILTDVVIVVSREQFR--AHKTVLMACSGLFYSI 58
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
+ CD T VG A +VLA S F +
Sbjct: 23 QYCDATLDVGGLVFK--AHWSVLACCSHFFQSL 53
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 36.8 bits (86), Expect = 1e-04
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
+ CD T VG A +VLA S F ++
Sbjct: 24 QYCDATLDVGGLVFK--AHWSVLACCSHFFQRI 54
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 36.5 bits (85), Expect = 2e-04
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
LCDVT LV R A ++VLAA S FH
Sbjct: 35 VLCDVTVLVEGQRFR--AHRSVLAACSSYFHSR 65
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 35.7 bits (83), Expect = 3e-04
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
LCD VG P A VLA S+ +
Sbjct: 29 ALCDTLITVGSQEFP--AHSLVLAGVSQQLGRR 59
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 35.7 bits (83), Expect = 3e-04
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
CDV+ +V A +AVLAA S F +
Sbjct: 32 LYCDVSVVVKGHAFK--AHRAVLAASSSYFRDL 62
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 35.7 bits (83), Expect = 4e-04
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKML 42
CD ++ P K +LAA S L
Sbjct: 46 RFCDAHLVLDGEEIP--VQKNILAAASPYIRTKL 77
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 35.3 bits (82), Expect = 8e-04
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 9 ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKM 41
CD ++ P K +LAA S
Sbjct: 30 RFCDAHLVLDGEEIP--VQKNILAAASPYIRTK 60
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 29.5 bits (67), Expect = 0.070
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 9 ELCDVTFL---VGDTREPVCAVKAVLAARSRVFHKM 41
CD+T G A ++VLAA + F +
Sbjct: 31 LFCDITLCFGGAGGREFR--AHRSVLAAATEYFTPL 64
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 26.1 bits (58), Expect = 1.2
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 20 TREPVCAVKAVLA----ARSRV--FHKMLYSAPSPQRKKDPPPKEN 59
+P CA++ + A +R +H++L S + +K+ ++
Sbjct: 313 DADPGCAIREAVENGAIAETRFENYHRILESMAQVKTRKNFSDTDD 358
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 25.0 bits (55), Expect = 3.0
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 18 GDTREPVCAVKAVLA 32
G+ C ++ VLA
Sbjct: 175 GEHFMMQCGMEVVLA 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 3.4
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 58 ENKLRLFLKRSSEPLLNLQ 76
+ L+L+ S+ P L ++
Sbjct: 26 QASLKLYADDSA-PALAIK 43
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 24.8 bits (54), Expect = 4.3
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 18 GDTREPVCAVKAVLA 32
GD ++ VLA
Sbjct: 191 GDHWMMHSGMEVVLA 205
>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter
freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A
2y2d_A 2y2e_A
Length = 187
Score = 24.2 bits (53), Expect = 5.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 47 SPQRKKDPPPK 57
+P+RK DP P
Sbjct: 158 APERKTDPGPS 168
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 24.4 bits (54), Expect = 5.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 50 RKKDPPPKENKLRLFLKRSSEPLLN 74
R K PP N L FL R PLL
Sbjct: 513 RGKIPPESSNPLNRFLIRVYHPLLL 537
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural
NPPSFA, national project on protein structural and
function analyses; 2.25A {Thermus thermophilus}
Length = 249
Score = 24.3 bits (54), Expect = 5.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 17 VGDTREPVCAVKAVLAARSR 36
VG + P ++KA+L R
Sbjct: 208 VGLGKRPPESLKAILKTADR 227
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif,
RNA-modifying enzyme, lyase; 1.50A {Escherichia coli}
SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Length = 264
Score = 23.6 bits (52), Expect = 9.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 16 LVGDTREPVCAVKAVLAARSR 36
VG +P + +LAA+ R
Sbjct: 207 EVGAHNQPESWIAELLAAKDR 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.390
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,140,418
Number of extensions: 53286
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 28
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)