RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2460
         (83 letters)



>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 9  ELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRKKDPPPK 57
           LCDV  +V          + VLA  S++F  + +            PK
Sbjct: 27 TLCDVVIMVDSQEFHAH--RTVLACTSKMFEILFHRNSQHYTLDFLSPK 73


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 34.7 bits (79), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 4  LASMPELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLYSAPSPQRK 51
          L S   L DV  +V   +      K VL A S +F+ +          
Sbjct: 19 LRSRDILTDVVIVVSREQFRAH--KTVLMACSGLFYSIFTDQLKRNLS 64


>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 117

 Score = 23.8 bits (51), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 44 SAPSP--QRKKDPPPKENKLRLFLKRSSEPL 72
          S+ S   +R+KD P  E    + +++ SEPL
Sbjct: 2  SSGSSGGERRKDRPYVEEPRHVKVQKGSEPL 32


>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
           thermophilus [TaxId: 274]}
          Length = 156

 Score = 23.7 bits (50), Expect = 3.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 14  TFLVGDTREPVCAVKAVLAARSRVFH 39
           T ++G   E V  V+  LA   +V H
Sbjct: 128 TVMLGGPEEAVERVRPFLAYAKKVVH 153


>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId:
           546]}
          Length = 187

 Score = 23.1 bits (49), Expect = 4.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 47  SPQRKKDPPPK 57
           +P+RK DP P 
Sbjct: 158 APERKTDPGPS 168


>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
          {Streptococcus pneumoniae r6 [TaxId: 171101]}
          Length = 135

 Score = 22.7 bits (48), Expect = 6.1
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 8  PELCDVTFLVGDTREPVCAVKAVLAARSRVFHKMLY 43
          P L +  FLVG T+E   +   V   +  +    L 
Sbjct: 2  PTL-ECDFLVGWTKEVAVSSHMVQQIKQNINQNFLT 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 271,854
Number of extensions: 9845
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)