BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2461
(462 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3
Length = 287
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 129/177 (72%), Gaps = 6/177 (3%)
Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
KP+GG+KNG R V +RK YYPT+D +K+ G++PF KH R+LR+S+ PGTI+I++
Sbjct: 93 KPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIIL 152
Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
G H+GKR VFLKQL SGLLLVTGP +LN +PLRR HQ +VIATST++DISGVK+PE
Sbjct: 153 TGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLT 212
Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
D +F+ KK ++PR + +R+K Y++++ RKV QK +D Q+L+ IK P+
Sbjct: 213 DTYFK--KKKLRKPRHQEGEIFDTEREK--YEITEQRKVDQKAVDSQILRRIKAVPQ 265
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 53 GRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
G++PF KH R+LR+S+ PGTI+I++ G H+GKR VFLKQL SGLLL
Sbjct: 128 GKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLL 173
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3
Length = 284
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 129/177 (72%), Gaps = 6/177 (3%)
Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
KP+GG+KNG R V +RK YYPT+D +K+ G++PF KH R+LR+S+ PGTI+I++
Sbjct: 90 KPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIIL 149
Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
G H+GKR +FLKQL SGLLLVTGP +LN +PLRR HQ +VIATST++DISGVK+PE
Sbjct: 150 TGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLT 209
Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
D +F+ KK ++PR + +++K Y++S+ RKV QK +D Q+L+ IK P+
Sbjct: 210 DAYFK--KKKLRKPRHQEGEIFDTEKEK--YEISEQRKVDQKAVDSQILRRIKAVPQ 262
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 12/71 (16%)
Query: 53 GRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKK-----NRV---- 103
G++PF KH R+LR+S+ PGTI+I++ G H+GKR +FLKQL SGLLL NRV
Sbjct: 125 GKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRR 184
Query: 104 ---NFFLATRT 111
F +AT T
Sbjct: 185 THQKFVIATST 195
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3
Length = 288
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 127/177 (71%), Gaps = 6/177 (3%)
Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
KP+GG+KNG R V +RK YYPT+D +K+ G++PF +H R+LR+S+ PGT++I++
Sbjct: 94 KPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIIL 153
Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
G H+GKR VFLKQL SGLLLVTGP LN +PLRR HQ +VIATST++DIS VK+P+
Sbjct: 154 TGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLT 213
Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
D +F+ KK ++PR + +F K+R Y++S+ RKV QK +D Q+L IK P+
Sbjct: 214 DAYFK--KKKLRKPRHQEG-EIFDTEKER-YQISEQRKVDQKAVDSQILPKIKAVPQ 266
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 41/53 (77%)
Query: 53 GRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNF 105
G++PF +H R+LR+S+ PGT++I++ G H+GKR VFLKQL SGLLL +N
Sbjct: 129 GKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNL 181
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3
Length = 288
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 126/177 (71%), Gaps = 6/177 (3%)
Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
KP+GG+KNG R V +RK YYPT+D +K+ G++PF +H R+LR+S+ PGTI+I++
Sbjct: 94 KPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIIL 153
Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
G H+GKR VFLKQL SGLLLVTGP LN +PLRR HQ +VIATST++DIS VK+P+
Sbjct: 154 TGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLT 213
Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
D +F+ KK ++PR + +++K Y++++ RK+ QK +D Q+L IK P+
Sbjct: 214 DAYFK--KKKLRKPRHQEGEIFDTEKEK--YEITEQRKIDQKAVDSQILPKIKAIPQ 266
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 12/71 (16%)
Query: 53 GRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKK-----NRV---- 103
G++PF +H R+LR+S+ PGTI+I++ G H+GKR VFLKQL SGLLL NRV
Sbjct: 129 GKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRR 188
Query: 104 ---NFFLATRT 111
F +AT T
Sbjct: 189 THQKFVIATST 199
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3
Length = 296
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 125/177 (70%), Gaps = 6/177 (3%)
Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
K +GG+KNG R V +RK YYPT+D +K+ G++PF +H RRLRSS+ PGT++I++
Sbjct: 102 KTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIIL 161
Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
G H+GKR VFLKQL+SGLLLVTGP +N +PLRR HQ +VIATST++DIS VK+P+
Sbjct: 162 TGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLT 221
Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
D +F+ KK ++PR + +++K Y++++ RK QK +D Q+L IK P+
Sbjct: 222 DAYFK--KKQLRKPRHQEGEIFDTEKEK--YEITEQRKADQKAVDLQILPKIKAVPQ 274
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 12/71 (16%)
Query: 53 GRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKK-----NRV---- 103
G++PF +H RRLRSS+ PGT++I++ G H+GKR VFLKQL+SGLLL NRV
Sbjct: 137 GKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRR 196
Query: 104 ---NFFLATRT 111
F +AT T
Sbjct: 197 THQKFVIATST 207
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5
Length = 298
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 125/177 (70%), Gaps = 6/177 (3%)
Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
K +GG+KNG R V +RK YYPT+D +K+ G++PF +H RRLRSS+ PGT++I++
Sbjct: 104 KTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIIL 163
Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
G H+GKR VFLKQL SGLLLVTGP ALN +PLRR HQ +VIATST++DIS VK+P+
Sbjct: 164 TGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLT 223
Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
D +F+ KK ++PR + +++K Y++++ RK QK +D Q+L IK P+
Sbjct: 224 DAYFK--KKPLRKPRHQEGEIFDTEKEK--YEITEQRKADQKAVDSQILPKIKAVPQ 276
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 12/71 (16%)
Query: 53 GRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKK-----NRV---- 103
G++PF +H RRLRSS+ PGT++I++ G H+GKR VFLKQL SGLLL NRV
Sbjct: 139 GKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRR 198
Query: 104 ---NFFLATRT 111
F +AT T
Sbjct: 199 THQKFVIATST 209
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=1
SV=1
Length = 217
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 113/180 (62%), Gaps = 16/180 (8%)
Query: 152 RKPKAYYPTKDKIKKVR--GRRPFRKHARR--LRSSLKPGTIVILVAGVHKGKRGVFLKQ 207
+KPK T K+ K++ G + H++ LR +L PGT++I++AG HKGKR VFLKQ
Sbjct: 35 KKPKFTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQ 94
Query: 208 L-ESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQ 266
L +SGLLLVTGP +N PLRR+ Q +VIATS ++++SGVK+PE ND +F+R K
Sbjct: 95 LPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKR-----KS 149
Query: 267 PRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTR 326
+ +++FA K Y VS+ RK K +D +L IK HPE K L +G++ TR
Sbjct: 150 TAQKTGKNIFASGKTE-YTVSEQRKKDIKTVDAPILAAIKKHPEHKFL-----FGYLGTR 203
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 64 LRSSLKPGTIVILVAGVHKGKRGVFLKQL-ESGLLL 98
LR +L PGT++I++AG HKGKR VFLKQL +SGLLL
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLL 102
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6
PE=2 SV=1
Length = 234
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 151 IRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLES 210
+ KP +YP D K + +R + +LR+S+ PGT++I++AG KGKR VFLKQL S
Sbjct: 59 VEKPPKFYPADDVKKPLINKR--KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSS 116
Query: 211 GLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKG 270
GLLLVTGPF +N +PLRRV+Q YVIATST++DISGV V E +D +F + + + +G
Sbjct: 117 GLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNV-EKFDDKYFGKKAEKKNKKGEG 175
Query: 271 DKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILL 315
+ F KK + + +K QK +D LLK I+ PE K L
Sbjct: 176 E---FFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYL 217
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%)
Query: 63 RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
+LR+S+ PGT++I++AG KGKR VFLKQL SGLLL
Sbjct: 85 KLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLL 120
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2
SV=1
Length = 233
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 151 IRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLES 210
+ KP +YP +D K + RR + +LR+S+ PGT++I++AG KGKR VFLKQL S
Sbjct: 58 VEKPPKFYPAEDVKKPLPNRRTAK--PTKLRASITPGTVLIILAGRFKGKRVVFLKQLAS 115
Query: 211 GLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKG 270
GLLLVTGPF +N +PLRRV+Q YVI TST++DISGV + + +D +F ++ + K+
Sbjct: 116 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTL-DKFDDKYFGKVAEKKKK---K 171
Query: 271 DKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILL 315
+ F K+ ++ + +K QK +D L+K I+ PE K L
Sbjct: 172 TEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYL 216
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 42 PPFLHRIKKVRGRRPFRKHAR--RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
PP + + V+ P R+ A+ +LR+S+ PGT++I++AG KGKR VFLKQL SGLLL
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLL 119
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2
SV=1
Length = 233
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 151 IRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLES 210
+ KP +YP +D K + RR + +LR+S+ PGT++I++AG KGKR VFLKQL S
Sbjct: 58 VEKPPKFYPAEDVKKPLPNRRTAKPA--KLRASITPGTVLIILAGRFKGKRVVFLKQLAS 115
Query: 211 GLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKG 270
GLLLVTGPF +N +PLRRV+Q YVI TST++DISGV + + +D +F ++ + K+
Sbjct: 116 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTL-DKFDDKYFGKVAEKKKK---K 171
Query: 271 DKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILL 315
+ F K+ ++ + +K QK +D L+K I+ PE K L
Sbjct: 172 TEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYL 216
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 42 PPFLHRIKKVRGRRPFRKHAR--RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
PP + + V+ P R+ A+ +LR+S+ PGT++I++AG KGKR VFLKQL SGLLL
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLL 119
>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2
SV=1
Length = 233
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 151 IRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLES 210
+ KP +YP +D K + RR + +L++S+ PGT++I++AG KGKR VFLKQL S
Sbjct: 58 VEKPAKFYPAEDVKKPLVNRR--KPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSS 115
Query: 211 GLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKG 270
GLLLVTGPF +N +PLRRV+Q YVI TST++DISGV E +D +F ++ + K+ +G
Sbjct: 116 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNT-EKFDDKYFGKVAEKKKKKTEG 174
Query: 271 DKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILL 315
+ + KK + K QK +D L+K I+ PE K+ L
Sbjct: 175 EFFEAEKEEKKEIPQEKKED---QKTVDAALIKSIEAVPELKVYL 216
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 63 RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
+L++S+ PGT++I++AG KGKR VFLKQL SGLLL
Sbjct: 84 KLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLL 119
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1
SV=1
Length = 236
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 114/193 (59%), Gaps = 14/193 (7%)
Query: 128 PKKPIYKIKPIGGEKN-GKERKVLIRKPKAYYPTK-DKIKKVRGRRPFRKHARRLRSSLK 185
PKK + + P+ EK GK ++V+ K + P+ +I+ ++ +K A LR S+
Sbjct: 37 PKKVVAPVTPV--EKTFGKGKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSIT 92
Query: 186 PGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISG 245
PGT++I++AG GKR V LKQL+SGL+L+TGPF +N +PLRR+ Q YVIATST++D+S
Sbjct: 93 PGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSS 152
Query: 246 VKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVM-QKDMDEQLLKV 304
VKV ND +F KK + + + F+ KK K +V QK +D +L V
Sbjct: 153 VKVAATINDAYFAAEKKSTTK----SEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAV 208
Query: 305 IKVHPEKKILLSY 317
+K ++K L Y
Sbjct: 209 LK---KEKFLTVY 218
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 64 LRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
LR S+ PGT++I++AG GKR V LKQL+SGL+L
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLIL 121
>sp|P0DJ56|RL6_TETTS 60S ribosomal protein L6 OS=Tetrahymena thermophila (strain SB210)
GN=RPL6 PE=1 SV=1
Length = 191
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 4/163 (2%)
Query: 144 GKERKVLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGV 203
GK R V K +Y D+ R+ + A +LR+ + PGT++IL+AG +GKR V
Sbjct: 7 GKNRGV--SKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVV 64
Query: 204 FLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKH 263
FLKQL+SGLLLVTGP+ +N +PL+RV+Q Y ++TST++D++GV + +D+F R +K
Sbjct: 65 FLKQLKSGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGR--EKA 122
Query: 264 NKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIK 306
K + K L ++KK+ + ARK Q+ +D LL +K
Sbjct: 123 RKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTPLLAAVK 165
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 54 RRPFRK-HARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
RR +K A +LR+ + PGT++IL+AG +GKR VFLKQL+SGLLL
Sbjct: 30 RRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLL 75
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6B PE=1 SV=4
Length = 176
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 8/160 (5%)
Query: 157 YYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVT 216
+YP++D + R+ R ++LR+SL PGT++IL+AG +GKR V+LK LE LLVT
Sbjct: 9 WYPSEDVAAPKKTRKAVR--PQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVT 66
Query: 217 GPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLF 276
GPF +N +PLRRV+ YVIATST++ + GV V E N +F + K K+ ++ + LF
Sbjct: 67 GPFKVNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAKEKLTKKEKKEAN---LF 122
Query: 277 AKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLS 316
+++ + K + QK +D+ LL IK P K LS
Sbjct: 123 PEQQTKEIKTERVED--QKVVDKALLAEIKKTPLLKQYLS 160
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 62 RRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
++LR+SL PGT++IL+AG +GKR V+LK LE LL
Sbjct: 28 QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLL 64
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rpl6 PE=1 SV=2
Length = 195
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 138 IGGEKNGKERKVLIRKPKA--YYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAG 195
+ G KNG ER VL A YYP + + R+ R +LR+SL PGT+ IL+AG
Sbjct: 6 VNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRPT--KLRASLAPGTVCILLAG 63
Query: 196 VHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATST-QLDISGVKVPEAAND 254
+GKR V L QLE L+VTGP+ +N +P+RRV+ YVIATS ++D+SGV V +
Sbjct: 64 RFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKA 122
Query: 255 HFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKIL 314
+F K+ P K D+ + FA+ + + R QK +D +LL IK P K
Sbjct: 123 YF---AKQKRSGPVKKDE-AFFAENAPK-NALPAERIADQKAVDAKLLPAIKAIPNMKEY 177
Query: 315 LS 316
L+
Sbjct: 178 LA 179
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 63 RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
+LR+SL PGT+ IL+AG +GKR V L QLE L++
Sbjct: 47 KLRASLAPGTVCILLAGRFRGKRVVVLSQLEDTLVV 82
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6A PE=1 SV=2
Length = 176
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 99/162 (61%), Gaps = 12/162 (7%)
Query: 157 YYPTKDKIKKVRGRRPFRKHAR--RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 214
+YP++D V + RK AR +LR+SL PGT++IL+AG +GKR V+LK LE LL
Sbjct: 9 WYPSED----VAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLL 64
Query: 215 VTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRS 274
++GPF +N +PLRRV+ YVIATST++ + GV V E N +F + K K+ ++ +
Sbjct: 65 ISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAKEKLTKKEKKEAN--- 120
Query: 275 LFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLS 316
LF +++ + K + QK +D+ L+ IK P K LS
Sbjct: 121 LFPEQQNKEIKAERVED--QKVVDKALIAEIKKTPLLKQYLS 160
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 58 RKHAR--RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
RK AR +LR+SL PGT++IL+AG +GKR V+LK LE LL
Sbjct: 22 RKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLL 64
>sp|O15595|RL6_ENTHI 60S ribosomal protein L6 (Fragment) OS=Entamoeba histolytica
GN=RPL6 PE=3 SV=1
Length = 92
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 156 AYYPTKDKI----KKVRGRRPFRKHA--------RRLRSSLKPGTIVILVAGVHKGKRGV 203
AYYPT D I KK+R R+ + A +LR S+ PG I+I+V G + GK+ V
Sbjct: 18 AYYPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGKKVV 77
Query: 204 FL 205
L
Sbjct: 78 SL 79
>sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl14e PE=3 SV=1
Length = 103
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 184 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDI 243
+ G +V+ V G G++ V + ++ +++TGP L + RRV+ N++ T ++DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNINHIEPTDKKIDI 64
>sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rpl14e PE=3 SV=1
Length = 103
Score = 35.0 bits (79), Expect = 1.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 187 GTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDI 243
G +V+ V G G++ V + ++ +L+TGP L + RRV+ N++ T +++I
Sbjct: 8 GRVVVKVLGREAGRKAVVVDVVDENYVLITGPKTLTGVKRRRVNINHIEPTDKKVEI 64
>sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl14e PE=3 SV=1
Length = 103
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 36/60 (60%)
Query: 184 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDI 243
+ G +V+ V G G++ V + ++ +++TGP +L+ + RRV+ N++ T +++I
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKSLSGVRRRRVNINHIEPTDKKIEI 64
>sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl14e PE=3 SV=1
Length = 103
Score = 34.7 bits (78), Expect = 1.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 187 GTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDI 243
G +V+ V G G++ V + ++ +++TGP + + RRV+ N++ T ++DI
Sbjct: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>sp|Q476Y3|HSLU_CUPPJ ATP-dependent protease ATPase subunit HslU OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=hslU PE=3
SV=1
Length = 443
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 276 FAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSV 335
A ++ R ++ K R ++ +++LL V+ + P + I S P NTR +KKL
Sbjct: 107 MAIKQTRESEMKKVRTKAEEAAEDRLLDVL-LPPPRDIGFSQPEEKDSNTRQVFRKKLRE 165
Query: 336 SPLDTSANGKISPASSLPPSLMSRGGKLCSPDAKQGPGGPPGMMSINEQIESMIS 390
LD + ++ A+ LP S D GPPGM + EQI SM +
Sbjct: 166 GQLD-DKDIELEVAAGLP-----------SMDIM----GPPGMEEMTEQIRSMFA 204
>sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1
Length = 1450
Score = 34.3 bits (77), Expect = 1.9, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 258 RRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKV 304
RR+K++ KQ RK R++ KKR KA ++++KD +EQL ++
Sbjct: 402 RRLKENEKQ-RKAIARNIIQSVKKRWNLAEKAYRILKKDEEEQLKRI 447
>sp|Q1H4M6|RL24_METFK 50S ribosomal protein L24 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rplX PE=3 SV=1
Length = 105
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 28/116 (24%)
Query: 182 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAM-------PLRRVHQNYV 234
S ++ G VIL G KGKRG L+ L +G +LV G +N + P+R + +
Sbjct: 2 SKIRKGDEVILNTGKDKGKRGTVLRVLPTGQVLVEG---INVVKKHAKPNPMRGIAGG-I 57
Query: 235 IATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDK---RSLFAKRKKRAYKVS 287
I+ +DIS V + N+ +KGD+ ++L RK R +K S
Sbjct: 58 ISKEMPVDISNVAL--------------FNRATQKGDRVGFKTLDDGRKVRVFKSS 99
>sp|A3DND4|RL14E_STAMF 50S ribosomal protein L14e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 33.9 bits (76), Expect = 3.0, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD 242
+++ G I + VAG G++ V + ++ +L+TGP +L + RR + ++ +D
Sbjct: 3 AIEIGRICVKVAGREAGRKCVIVDIIDENFVLITGPKSLTGVKRRRANVKHIEPLDKVID 62
Query: 243 IS 244
IS
Sbjct: 63 IS 64
>sp|Q4JAJ9|RL14E_SULAC 50S ribosomal protein L14e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl14e PE=3 SV=1
Length = 96
Score = 33.5 bits (75), Expect = 3.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD 242
+++ G I + G GK+ V + ++S +LVTGP +N + RRV+ ++ T +++
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVE 62
Query: 243 IS 244
I+
Sbjct: 63 IN 64
>sp|Q2YAY6|RL24_NITMU 50S ribosomal protein L24 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rplX PE=3 SV=1
Length = 105
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 182 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTG 217
S +K G VI++AG KGKRG L+ ++ L++V G
Sbjct: 2 SKIKKGDDVIVIAGKDKGKRGTVLRVMKPDLVVVEG 37
>sp|A8ABY5|RL14E_IGNH4 50S ribosomal protein L14e OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=rpl14e PE=3 SV=1
Length = 103
Score = 33.1 bits (74), Expect = 4.1, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD 242
+++ G + +++AG GK+ V + ++ +LVTGP LN + RR++ ++ +++
Sbjct: 3 AIEVGRVCVIIAGRRAGKKCVIVDLIDDKFVLVTGPKELNGVKRRRMNIKHLEPLDKKVE 62
Query: 243 I 243
I
Sbjct: 63 I 63
>sp|B1YA63|RL14E_PYRNV 50S ribosomal protein L14e OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl14e PE=3 SV=1
Length = 103
Score = 32.7 bits (73), Expect = 5.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 187 GTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDI 243
G +V+ V G G++ V + ++ +++TGP L + RRV+ N++ T ++++
Sbjct: 8 GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNVNHIEPTDKKVEV 64
>sp|B8D5U3|RL14E_DESK1 50S ribosomal protein L14e OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl14e PE=3 SV=1
Length = 96
Score = 32.7 bits (73), Expect = 6.1, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD 242
+++ G I + AG G++ + + ++ +LVTGP +L + R+V+ ++ T
Sbjct: 3 AIEIGRICVKTAGREAGRKCIIVDIIDDNFVLVTGPKSLTGVKRRKVNIKHLEPTD---- 58
Query: 243 ISGVKVPEAAND 254
+K+P A+D
Sbjct: 59 -KSIKIPRGASD 69
>sp|Q3SLN8|RL24_THIDA 50S ribosomal protein L24 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rplX PE=3 SV=1
Length = 107
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 190 VILVAGVHKGKRGVFLKQLESGLLLVTG 217
VI++AG KGKRG L+ L+ G L+V G
Sbjct: 10 VIILAGKDKGKRGTVLRVLDDGHLVVEG 37
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,603,703
Number of Sequences: 539616
Number of extensions: 7955613
Number of successful extensions: 27187
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 27060
Number of HSP's gapped (non-prelim): 156
length of query: 462
length of database: 191,569,459
effective HSP length: 121
effective length of query: 341
effective length of database: 126,275,923
effective search space: 43060089743
effective search space used: 43060089743
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)