Query psy2461
Match_columns 462
No_of_seqs 296 out of 592
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 16:53:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_G 60S ribosomal protein R 100.0 1E-70 3.5E-75 504.8 -1.6 175 149-334 1-175 (176)
2 3iz5_G 60S ribosomal protein L 100.0 1.8E-68 6.1E-73 503.2 -7.9 184 142-334 31-218 (219)
3 4a18_E RPL6; ribosome, eukaryo 100.0 2.2E-64 7.6E-69 467.7 10.6 174 151-334 12-190 (191)
4 3izc_G 60S ribosomal protein R 99.9 6E-26 2E-30 208.8 5.1 80 38-119 6-97 (176)
5 4a18_E RPL6; ribosome, eukaryo 99.9 4.3E-24 1.5E-28 198.5 6.6 79 38-116 15-105 (191)
6 3iz5_G 60S ribosomal protein L 99.9 1.1E-23 3.6E-28 199.2 0.4 79 38-118 47-137 (219)
7 2joy_A 50S ribosomal protein L 99.7 2.2E-18 7.4E-23 144.4 6.6 73 183-260 3-75 (96)
8 4a18_N RPL27, ribosomal protei 99.3 2.5E-12 8.7E-17 115.5 5.1 73 183-258 4-103 (144)
9 3j21_5 50S ribosomal protein L 99.0 4.8E-10 1.6E-14 92.3 5.6 61 183-244 3-63 (83)
10 3izc_N 60S ribosomal protein R 98.7 7.4E-09 2.5E-13 92.6 5.4 61 182-244 13-73 (138)
11 2joy_A 50S ribosomal protein L 98.7 1.5E-08 5E-13 85.0 4.3 48 67-114 3-62 (96)
12 3izc_a 60S ribosomal protein R 98.6 1.8E-10 6.3E-15 102.7 -8.6 63 183-245 4-91 (136)
13 3iz5_a 60S ribosomal protein L 98.5 8.7E-10 3E-14 98.4 -6.9 62 183-244 4-90 (136)
14 3iz5_N 60S ribosomal protein L 98.2 6.8E-07 2.3E-11 79.6 4.1 58 183-244 6-63 (134)
15 4a18_F RPL14; ribosome, eukary 97.9 9.4E-06 3.2E-10 71.8 4.8 58 183-244 6-64 (126)
16 4a18_N RPL27, ribosomal protei 97.7 2.7E-05 9.2E-10 70.3 4.6 35 67-101 4-45 (144)
17 3izc_a 60S ribosomal protein R 97.2 3.6E-05 1.2E-09 68.9 -0.8 35 67-101 4-45 (136)
18 3iz5_a 60S ribosomal protein L 97.1 4.1E-05 1.4E-09 68.6 -1.3 35 67-101 4-45 (136)
19 3j21_5 50S ribosomal protein L 96.3 0.0028 9.5E-08 52.2 3.7 36 67-102 3-38 (83)
20 3izc_N 60S ribosomal protein R 95.7 0.0076 2.6E-07 54.1 4.2 39 65-103 12-50 (138)
21 2zjr_R 50S ribosomal protein L 93.8 0.051 1.8E-06 47.1 4.2 68 177-249 11-84 (115)
22 3iz5_N 60S ribosomal protein L 93.0 0.074 2.5E-06 47.5 4.0 38 66-103 5-42 (134)
23 3r8s_U 50S ribosomal protein L 91.3 0.23 7.8E-06 42.3 4.8 63 183-248 3-71 (102)
24 3v2d_Y 50S ribosomal protein L 90.9 0.21 7.2E-06 43.1 4.2 64 183-249 6-75 (110)
25 2zkr_t 60S ribosomal protein L 88.8 0.29 1E-05 44.1 3.7 65 183-256 48-115 (145)
26 4a18_F RPL14; ribosome, eukary 88.5 0.36 1.2E-05 42.8 3.9 37 67-103 6-42 (126)
27 1vq8_T 50S ribosomal protein L 88.3 0.36 1.2E-05 42.3 3.8 58 183-249 42-100 (120)
28 2ftc_N Mitochondrial ribosomal 88.2 0.38 1.3E-05 40.5 3.7 58 187-248 1-64 (96)
29 3j21_U 50S ribosomal protein L 86.5 0.53 1.8E-05 41.3 3.8 57 183-248 45-102 (121)
30 3u5e_Y L33, YL33, 60S ribosoma 84.8 0.81 2.8E-05 40.5 4.1 57 184-249 50-107 (127)
31 4a17_S RPL26, 60S ribosomal pr 81.2 1.1 3.6E-05 40.2 3.5 57 184-249 49-106 (135)
32 3iz5_Y 60S ribosomal protein L 80.5 1.3 4.5E-05 40.2 3.9 58 184-250 49-107 (150)
33 3bbo_W Ribosomal protein L24; 77.9 0.25 8.5E-06 46.5 -1.7 63 183-248 68-136 (191)
34 2do3_A Transcription elongatio 66.1 7 0.00024 31.4 4.4 39 177-215 11-49 (69)
35 2ab9_A Pro-SFTI-1; protein, be 49.0 13 0.00046 25.6 2.8 27 332-368 3-29 (31)
36 2zjr_R 50S ribosomal protein L 48.9 19 0.00065 31.1 4.5 41 59-101 9-50 (115)
37 3ujm_A Rasputin; NTF2-like fol 33.8 22 0.00077 29.7 2.5 27 212-238 79-105 (120)
38 1vq8_T 50S ribosomal protein L 27.7 59 0.002 28.4 4.2 34 67-100 42-76 (120)
39 3r8s_U 50S ribosomal protein L 27.6 61 0.0021 27.4 4.2 38 67-105 3-40 (102)
40 3q90_A RAS GTPase-activating p 24.7 40 0.0014 29.0 2.5 27 212-238 92-118 (140)
41 2zkr_t 60S ribosomal protein L 24.2 67 0.0023 28.9 4.0 38 67-105 48-87 (145)
42 2do3_A Transcription elongatio 24.2 1.1E+02 0.0038 24.5 4.9 40 60-99 10-49 (69)
43 3j21_U 50S ribosomal protein L 22.7 80 0.0027 27.5 4.1 37 67-104 45-82 (121)
44 2rm4_A CG6311-PB, DM EDC3; enh 22.1 27 0.00092 30.1 0.9 46 195-248 24-69 (103)
45 3nv0_B NTF2-related export pro 21.5 48 0.0017 29.3 2.5 26 212-237 113-138 (154)
46 3v2d_Y 50S ribosomal protein L 20.3 92 0.0031 26.7 3.9 38 67-105 6-44 (110)
47 1zo2_A NTF2, nuclear transport 20.1 55 0.0019 27.7 2.5 26 213-238 87-112 (129)
No 1
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=100.00 E-value=1e-70 Score=504.83 Aligned_cols=175 Identities=35% Similarity=0.580 Sum_probs=166.7
Q ss_pred EeccCCCCCCCCcccCccccCCCCcccchhccccCcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCccee
Q psy2461 149 VLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRR 228 (462)
Q Consensus 149 V~l~K~pryYPtEDvp~k~~s~K~fs~h~rKLRsSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRR 228 (462)
|+++|||+||||||+|+++.+++ ++|+++||+||+||||||+|+|||+||||||||||+||||||||||+||||||||
T Consensus 1 ~~~~k~p~~YPtedv~~~~~~~k--~~~~~klR~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR 78 (176)
T 3izc_G 1 MSAQKAPKWYPSEDVAALKKTRK--AARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRR 78 (176)
T ss_dssp CCSSCCCCCCCCCCCCCCCTTTS--TTSSCSHHHHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEE
T ss_pred CCcccccCcCCcccccccccccc--ccccccccccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCccee
Confidence 46889999999999999999876 6999999999999999999999999999999999999999999999999999999
Q ss_pred eccceEEEcceeeecCCcccCCccChhhhhhhhhccCCCCcccccccchhhhhhhccchHHHHHhHHHHhHHHHHHhhcC
Q psy2461 229 VHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVH 308 (462)
Q Consensus 229 VnQryVIATSTKVDISgVkip~~ltDaYFkkkK~~~kK~~k~~E~eIF~~e~keKy~iseqrKaDQK~VD~qLL~~IKkv 308 (462)
+||+|||||||+||||||++ ++|||+||+++++ +| ++++|+|||+++ |+|+++|||++|||+||++||++||++
T Consensus 79 ~~q~~vIaTstkidis~vki-~~l~D~YF~k~k~--~k-~k~~E~eiF~~~--ek~~vseqrk~dQK~VD~~ll~~Ikk~ 152 (176)
T 3izc_G 79 VNARYVIATSTKVSVEGVNV-EKFNVEYFAKEKL--TK-KEKKEANLFPEQ--QNKEIKAERVEDQKVVDKALIAEIKKT 152 (176)
T ss_dssp ESSSSCEECSCCCSSSSCCC-SSCCCSSHHHHHH--HH-HHHHHHHHHHHH--HTTCSTTHHHHHHHCSCCTTCCCCCCC
T ss_pred eecceEEeeeeeeecccccc-cccCHHHhhhhhc--cc-cccchhhhcccc--ccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999 9999999999876 44 789999999765 899999999999999999999999999
Q ss_pred CchhhhhccCCCccccCCCCCCCCCC
Q psy2461 309 PEKKILLSYPPWGWINTRDFNQKKLS 334 (462)
Q Consensus 309 p~~K~Lk~YL~S~FsLt~~fy~~k~~ 334 (462)
|+ |++||+|.|+|+||.|+|++-
T Consensus 153 p~---L~~YL~s~FsL~~g~~PH~m~ 175 (176)
T 3izc_G 153 PL---LKQYLSASFSLKNGDKPHMLK 175 (176)
T ss_dssp CC---THHHHHHHHHHHHHCCCSCCC
T ss_pred HH---HHHhccceeECCCCCcccccc
Confidence 98 999999999999999999873
No 2
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=100.00 E-value=1.8e-68 Score=503.24 Aligned_cols=184 Identities=39% Similarity=0.607 Sum_probs=173.9
Q ss_pred cCCCeeeE----eccCCCCCCCCcccCccccCCCCcccchhccccCcCCCcEEEEecceecCceEEEEEeecCceEEEec
Q psy2461 142 KNGKERKV----LIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTG 217 (462)
Q Consensus 142 KNGg~rvV----~l~K~pryYPtEDvp~k~~s~K~fs~h~rKLRsSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTG 217 (462)
||||++.+ +..++|+||||||+|+++.+++ ++|+++||+||+||||||||+|+|+||||||||||+||||||||
T Consensus 31 k~gg~~~~~~k~~~~~~p~~YPtedv~~~~~~~k--~~~~~klR~si~pGtVlIil~Gr~~GKrvVfLkqL~sgllLVtG 108 (219)
T 3iz5_G 31 KHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTR--KPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITG 108 (219)
T ss_dssp HHHHHCCCCCCCCSSCCCCCCSSTTHHHHHHHHH--TTHHHHHHHHCSCCSCEECSSSSSSCCEECEEEESSSSSEEECC
T ss_pred ccCCccccccccccccccCcCCcccccccccccc--CcCcccccccccCCCEEEEeccccCCcEEEEEEecCCCeEEEcC
Confidence 78888888 6778999999999999988865 68999999999999999999999999999999999999999999
Q ss_pred cccccCCcceeeccceEEEcceeeecCCcccCCccChhhhhhhhhccCCCCcccccccchhhhhhhccchHHHHHhHHHH
Q psy2461 218 PFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDM 297 (462)
Q Consensus 218 PfklNGVPLRRVnQryVIATSTKVDISgVkip~~ltDaYFkkkK~~~kK~~k~~E~eIF~~e~keKy~iseqrKaDQK~V 297 (462)
||.||||||||+||+|||||||+||||||+| ++|||+||+++++ +| ++++|+|||+++++|+|+++|||++|||+|
T Consensus 109 P~~lNgVplrR~~qk~viaTstkIdIs~Vki-~~l~D~YF~k~k~--~k-~k~~E~eiF~~~k~ek~~iseqrk~dQK~V 184 (219)
T 3iz5_G 109 PFKINGVPIRRVNQAYVIATSTKVDISKVNV-QKFDDKYFAREKK--TR-AKKTEGELFESDKEATKNLPDFKKDDQKVI 184 (219)
T ss_dssp CCSSSCCCCEEESSSSCEECSCCCSCSSCCC-SSCCCSSHHHHHH--HH-HHHHHHHHHHHHHHHCSCTHHHHHHHHHCS
T ss_pred CccccCCccEEechhhEEecceEeecCcccc-ccccHHHHhhhhh--cc-cccchhhhhcccccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999876 45 789999999998338999999999999999
Q ss_pred hHHHHHHhhcCCchhhhhccCCCccccCCCCCCCCCC
Q psy2461 298 DEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLS 334 (462)
Q Consensus 298 D~qLL~~IKkvp~~K~Lk~YL~S~FsLt~~fy~~k~~ 334 (462)
|++||++||++|+ |++||+|.|+|+||.|+|++-
T Consensus 185 D~~ll~~IKk~p~---L~~YL~s~FsL~~g~~PH~l~ 218 (219)
T 3iz5_G 185 DAELIKAIDAVPD---LKNYLGARFSLRDGDKPHEMT 218 (219)
T ss_dssp CCCSCCCCCCCCC---THHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHhcCHH---HHhhccceeECCCCCcCcccC
Confidence 9999999999998 999999999999999999873
No 3
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=100.00 E-value=2.2e-64 Score=467.71 Aligned_cols=174 Identities=35% Similarity=0.592 Sum_probs=162.9
Q ss_pred ccCCCCCCCCcccCccccCCCCcccchhccccCcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeec
Q psy2461 151 IRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVH 230 (462)
Q Consensus 151 l~K~pryYPtEDvp~k~~s~K~fs~h~rKLRsSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVn 230 (462)
.+|||+||||||+|+++.++++|++|+++||+||+||||||||+|||+||||||||||+|||||||||++||||||||+|
T Consensus 12 ~~k~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn 91 (191)
T 4a18_E 12 VSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVN 91 (191)
T ss_dssp TTSHHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEEC
T ss_pred cccccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEe
Confidence 46999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcceeeecCCcccCCccChhhhhhhhhccCCCCcccccccchhh---hhhhcc--chHHHHHhHHHHhHHHHHHh
Q psy2461 231 QNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKR---KKRAYK--VSKARKVMQKDMDEQLLKVI 305 (462)
Q Consensus 231 QryVIATSTKVDISgVkip~~ltDaYFkkkK~~~kK~~k~~E~eIF~~e---~keKy~--iseqrKaDQK~VD~qLL~~I 305 (462)
|+|||||||+||||||++| ++||+||++++ ++++|+|||+++ ++++|+ ++|||++|||+||++||++|
T Consensus 92 ~~~vi~TstkvDis~vki~-~~~d~YF~k~k------~k~~e~eiF~~~~~~kek~~~~~iseqrk~dQK~VD~~ll~~I 164 (191)
T 4a18_E 92 QAYTLSTSTKVDLTGVNTA-KFEDDYFGREK------ARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTPLLAAV 164 (191)
T ss_dssp GGGEEEEEEECCCTTCCGG-GCCGGGSCCCC------CCCCTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEeeeeEeeccccccc-ccCHHHhcccc------cccchhhhhcccccchhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 69999999754 367999999876 322255 99999999999999999999
Q ss_pred hcCCchhhhhccCCCccccCCCCCCCCCC
Q psy2461 306 KVHPEKKILLSYPPWGWINTRDFNQKKLS 334 (462)
Q Consensus 306 Kkvp~~K~Lk~YL~S~FsLt~~fy~~k~~ 334 (462)
|++|+ |++||+|.|+|+||.|+|++-
T Consensus 165 Kk~p~---L~~YL~s~FsL~~g~~PH~m~ 190 (191)
T 4a18_E 165 KKVEF---LKNYLASKFTLNNNDRPHEMK 190 (191)
T ss_dssp HTSTT---HHHHHHSBCCCCTTCCTTTCC
T ss_pred hcCHH---HHhhccceeECCCCCcCcccc
Confidence 99998 999999999999999999873
No 4
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=99.92 E-value=6e-26 Score=208.81 Aligned_cols=80 Identities=33% Similarity=0.451 Sum_probs=73.1
Q ss_pred hcCCCCCcccccccCCCCCCcccccccccccCCCcEEEEeecccCCceEEEEeecCCceeEeeccce------------E
Q psy2461 38 ESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVN------------F 105 (462)
Q Consensus 38 ~~~~ypt~d~~~k~~~kk~fsqh~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~n------------f 105 (462)
.+.||||+|++++...++ ++|+++||+||+||||||||+|+|+||||||||||+|||||||||+. |
T Consensus 6 ~p~~YPtedv~~~~~~~k--~~~~~klR~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~q~~ 83 (176)
T 3izc_G 6 APKWYPSEDVAALKKTRK--AARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARY 83 (176)
T ss_dssp CCCCCCCCCCCCCCTTTS--TTSSCSHHHHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEESSSS
T ss_pred ccCcCCcccccccccccc--ccccccccccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeeecce
Confidence 478999999999987765 79999999999999999999999999999999999999999999872 9
Q ss_pred EEEeeccccCCCCC
Q psy2461 106 FLATRTVEKHSPHP 119 (462)
Q Consensus 106 VIaTSTVEKhsaak 119 (462)
||||||...-+..+
T Consensus 84 vIaTstkidis~vk 97 (176)
T 3izc_G 84 VIATSTKVSVEGVN 97 (176)
T ss_dssp CEECSCCCSSSSCC
T ss_pred EEeeeeeeeccccc
Confidence 99999998777443
No 5
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.89 E-value=4.3e-24 Score=198.54 Aligned_cols=79 Identities=37% Similarity=0.477 Sum_probs=74.3
Q ss_pred hcCCCCCcccccccCCCCCCcccccccccccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc------------eE
Q psy2461 38 ESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV------------NF 105 (462)
Q Consensus 38 ~~~~ypt~d~~~k~~~kk~fsqh~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~------------nf 105 (462)
.+.||||+|++++...+++|+||+++||+||+||||||||+|+|+||||||||||+|||||||||+ +|
T Consensus 15 ~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn~~~ 94 (191)
T 4a18_E 15 ISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVNQAY 94 (191)
T ss_dssp HHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEECGGG
T ss_pred ccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEeeee
Confidence 367999999999998889999999999999999999999999999999999999999999999986 29
Q ss_pred EEEeeccccCC
Q psy2461 106 FLATRTVEKHS 116 (462)
Q Consensus 106 VIaTSTVEKhs 116 (462)
||+|||...-+
T Consensus 95 vi~TstkvDis 105 (191)
T 4a18_E 95 TLSTSTKVDLT 105 (191)
T ss_dssp EEEEEEECCCT
T ss_pred EEeeeeEeecc
Confidence 99999988766
No 6
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.87 E-value=1.1e-23 Score=199.21 Aligned_cols=79 Identities=41% Similarity=0.541 Sum_probs=72.0
Q ss_pred hcCCCCCcccccccCCCCCCcccccccccccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc--e----------E
Q psy2461 38 ESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV--N----------F 105 (462)
Q Consensus 38 ~~~~ypt~d~~~k~~~kk~fsqh~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~--n----------f 105 (462)
++.||||+|++++...+ +++|+++||+||+||||||||+|+|+||||||||||+|||||||||+ | |
T Consensus 47 ~p~~YPtedv~~~~~~~--k~~~~~klR~si~pGtVlIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~ 124 (219)
T 3iz5_G 47 EPKFYPADDVKPRTVST--RKPHPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAY 124 (219)
T ss_dssp CCCCCSSTTHHHHHHHH--HTTHHHHHHHHCSCCSCEECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSS
T ss_pred ccCcCCccccccccccc--cCcCcccccccccCCCEEEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhh
Confidence 69999999999987553 37999999999999999999999999999999999999999999997 2 9
Q ss_pred EEEeeccccCCCC
Q psy2461 106 FLATRTVEKHSPH 118 (462)
Q Consensus 106 VIaTSTVEKhsaa 118 (462)
||||||...-+.-
T Consensus 125 viaTstkIdIs~V 137 (219)
T 3iz5_G 125 VIATSTKVDISKV 137 (219)
T ss_dssp CEECSCCCSCSSC
T ss_pred EEecceEeecCcc
Confidence 9999998877744
No 7
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.73 E-value=2.2e-18 Score=144.43 Aligned_cols=73 Identities=25% Similarity=0.452 Sum_probs=69.2
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecCCcccCCccChhhhhhh
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRI 260 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip~~ltDaYFkkk 260 (462)
+++||+|+|+++|||+||+||||+++++|++||+||...|++|.+|+|++|+++|++++| +|..++|+||++.
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vd-----i~~~~~~~~vrka 75 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID-----IQKGASDEEVKKK 75 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECC-----CCSSCCHHHHHHH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEe-----CCCCCChHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999998 4578999999853
No 8
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=99.27 E-value=2.5e-12 Score=115.54 Aligned_cols=73 Identities=30% Similarity=0.428 Sum_probs=63.3
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecC-------ceEEEec----cccccC-------Cccee-------eccceEEEc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLES-------GLLLVTG----PFALNA-------MPLRR-------VHQNYVIAT 237 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~S-------GLLLVTG----PfklNG-------VPLRR-------VnQryVIAT 237 (462)
-++||+|+|+|+|||+||+||+||++++ |.+||+| |.++++ ++..| +|.+++++|
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT 83 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT 83 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence 3789999999999999999999999999 7999999 999999 88888 999999999
Q ss_pred ceee--ecCCcccCCccChhhhh
Q psy2461 238 STQL--DISGVKVPEAANDHFFR 258 (462)
Q Consensus 238 STKV--DISgVkip~~ltDaYFk 258 (462)
++.| ||. ++ .-++.+-|+
T Consensus 84 ry~v~~di~-lK--~~v~~d~~~ 103 (144)
T 4a18_N 84 RYSVKELCD-FK--ELVKEDKIK 103 (144)
T ss_dssp EEECSTTCC-HH--HHSCHHHHH
T ss_pred eEEeeccCc-hh--hccCHHHhh
Confidence 9999 875 32 124555554
No 9
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.97 E-value=4.8e-10 Score=92.27 Aligned_cols=61 Identities=26% Similarity=0.520 Sum_probs=57.3
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecC
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDIS 244 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDIS 244 (462)
-+.+|.|+++++||++||.+|+++.++++.+||.|| .++|||.+++|.+++..|+.++++.
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~-~~~~v~rk~kn~khl~lt~~~i~~~ 63 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIP 63 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC-TTTTCCCEEESCSSCEEEEEECCCC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC-ccCccCCeEechHHEEEeeEEEECC
Confidence 478999999999999999999999999999999999 7799999999999999999987743
No 10
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=98.74 E-value=7.4e-09 Score=92.58 Aligned_cols=61 Identities=18% Similarity=0.410 Sum_probs=57.6
Q ss_pred cCcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecC
Q psy2461 182 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDIS 244 (462)
Q Consensus 182 sSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDIS 244 (462)
.-+.||.|+++++|+++||.+|+++.+++|.+||.|| .+|||.+++|-+++..|..+|||+
T Consensus 13 rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp--~~gV~R~~~n~khL~lT~~~v~i~ 73 (138)
T 3izc_N 13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP--KAGVPRQAINLGQVVLTPLTFALP 73 (138)
T ss_dssp CCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECS--SSSCCCEEEECSSSEEEEEECCCC
T ss_pred hhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcC--CCCcccceechhHeEEecEEEEcc
Confidence 3478999999999999999999999999999999999 589999999999999999999876
No 11
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=98.65 E-value=1.5e-08 Score=84.98 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=43.6
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc------------eEEEEeecccc
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV------------NFFLATRTVEK 114 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~------------nfVIaTSTVEK 114 (462)
+++||+|+|+++|+|+||+||+++++++|++||+||. +++++|+++..
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vd 62 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEe
Confidence 6899999999999999999999999999999999984 28888887765
No 12
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=98.62 E-value=1.8e-10 Score=102.74 Aligned_cols=63 Identities=29% Similarity=0.498 Sum_probs=54.1
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCc-------eEEEec----cccccC-------Ccceee-------ccceEEEc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESG-------LLLVTG----PFALNA-------MPLRRV-------HQNYVIAT 237 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SG-------LLLVTG----PfklNG-------VPLRRV-------nQryVIAT 237 (462)
-++||+|+|+|+|||+|++||+||++++| ..||+| |.++.+ .--.++ |-+++++|
T Consensus 4 f~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3izc_a 4 FLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPT 83 (136)
T ss_dssp -CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceeee
Confidence 37899999999999999999999999998 899999 777665 333455 99999999
Q ss_pred ceeeecCC
Q psy2461 238 STQLDISG 245 (462)
Q Consensus 238 STKVDISg 245 (462)
...|||+.
T Consensus 84 Ry~vdi~~ 91 (136)
T 3izc_a 84 RYTLDVEA 91 (136)
T ss_dssp HHHHHHHH
T ss_pred eeeEcccc
Confidence 99999863
No 13
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=98.52 E-value=8.7e-10 Score=98.43 Aligned_cols=62 Identities=34% Similarity=0.536 Sum_probs=53.8
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCc-------eEEEec----cccccC-------Ccceee-------ccceEEEc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESG-------LLLVTG----PFALNA-------MPLRRV-------HQNYVIAT 237 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SG-------LLLVTG----PfklNG-------VPLRRV-------nQryVIAT 237 (462)
-++||+|+|+|+|||+|++||+||++++| ..||+| |.++.+ .--.|+ |-+++++|
T Consensus 4 ~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3iz5_a 4 FLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPT 83 (136)
T ss_dssp SCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceecc
Confidence 47899999999999999999999999998 899999 777665 223444 99999999
Q ss_pred ceeeecC
Q psy2461 238 STQLDIS 244 (462)
Q Consensus 238 STKVDIS 244 (462)
...|||.
T Consensus 84 RY~vdi~ 90 (136)
T 3iz5_a 84 RYTLDVD 90 (136)
T ss_dssp HHHHHHH
T ss_pred ceEeecc
Confidence 9999885
No 14
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=98.22 E-value=6.8e-07 Score=79.62 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=54.9
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecC
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDIS 244 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDIS 244 (462)
=+.||.|++++.|+++||.+|+++.++++.+||.||. ||-+++|-+++..|...|||.
T Consensus 6 fvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~----v~Rk~~n~khL~lT~~~v~i~ 63 (134)
T 3iz5_N 6 FVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD----MVRCQINFKRLSLTDIKIDIK 63 (134)
T ss_dssp SCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETT----EEEEEEECTTSEEEEEECCCC
T ss_pred ccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCC----ccceeechhHeEEeCEEEecc
Confidence 4789999999999999999999999999999999997 899999999999999998875
No 15
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=97.89 E-value=9.4e-06 Score=71.77 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=53.7
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeee-cC
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD-IS 244 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVD-IS 244 (462)
=+.+|.|++++.|+++||.||++..++.+-.||.||- ||-+++|-+++..|.-+|| |.
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~----V~Rq~~n~k~l~LT~~~v~~i~ 64 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH----IVRQVIPIRRVHLTKFQIDNVE 64 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT----EEEEEEEGGGEEEEEEECTTCC
T ss_pred ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC----cccceeeccceEEcceeccccC
Confidence 3679999999999999999999999999999999996 9999999999999988876 53
No 16
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=97.70 E-value=2.7e-05 Score=70.25 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=32.5
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCC-------ceeEeec
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLES-------GLLLKKN 101 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~S-------gLLlVT~ 101 (462)
-+.||+|+|+|+|+|+||+||+++++++ |.+||+|
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaG 45 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAG 45 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEe
Confidence 4789999999999999999999999999 6888887
No 17
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=97.22 E-value=3.6e-05 Score=68.92 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.0
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCCc-------eeEeec
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLESG-------LLLKKN 101 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~Sg-------LLlVT~ 101 (462)
-+.||+|+|+|+||++|++||+||++++| -.||.|
T Consensus 4 f~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaG 45 (136)
T 3izc_a 4 FLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAG 45 (136)
T ss_dssp -CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBC
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEe
Confidence 47899999999999999999999999998 566666
No 18
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=97.14 E-value=4.1e-05 Score=68.55 Aligned_cols=35 Identities=37% Similarity=0.631 Sum_probs=31.5
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCCc-------eeEeec
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLESG-------LLLKKN 101 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~Sg-------LLlVT~ 101 (462)
-+.||+|+|+|+||++|++||++|++++| -.||.|
T Consensus 4 ~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaG 45 (136)
T 3iz5_a 4 FLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAG 45 (136)
T ss_dssp SCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBC
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEe
Confidence 47899999999999999999999999998 566665
No 19
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.30 E-value=0.0028 Score=52.15 Aligned_cols=36 Identities=19% Similarity=0.480 Sum_probs=34.1
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCCceeEeecc
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNR 102 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p 102 (462)
.+.+|.++++++|+++||.+|.++.++.+.+||.||
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~ 38 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA 38 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC
Confidence 478999999999999999999999999999999987
No 20
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=95.74 E-value=0.0076 Score=54.05 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=36.0
Q ss_pred ccccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc
Q psy2461 65 RSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV 103 (462)
Q Consensus 65 R~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~ 103 (462)
..-+.||.|++++.|++.||.+|.++.++.+..||.||.
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp~ 50 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPK 50 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECSS
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcCC
Confidence 345789999999999999999999999999999999995
No 21
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=93.83 E-value=0.051 Score=47.08 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=50.6
Q ss_pred hhccccCcCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCc-----ceeeccceEEEcceeeecCCcccC
Q psy2461 177 ARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMP-----LRRVHQNYVIATSTQLDISGVKVP 249 (462)
Q Consensus 177 ~rKLRsSItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVP-----LRRVnQryVIATSTKVDISgVkip 249 (462)
.+++ .|..|+.+++++|.++||+-..|+.+. .+-++|.| +|-+- -..-.|-=++....-|++|||.+-
T Consensus 11 ~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG---vN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv 84 (115)
T 2zjr_R 11 NDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVALV 84 (115)
T ss_dssp TSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECB
T ss_pred ceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---cEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEE
Confidence 4455 589999999999999999999999984 78999999 77552 211112334445567899999774
No 22
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=93.05 E-value=0.074 Score=47.45 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=35.4
Q ss_pred cccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc
Q psy2461 66 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV 103 (462)
Q Consensus 66 ~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~ 103 (462)
.-+.||.|++++.|++.|+-+|.++.++.+-.||.||.
T Consensus 5 rfvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~ 42 (134)
T 3iz5_N 5 RFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD 42 (134)
T ss_dssp CSCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETT
T ss_pred cccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCC
Confidence 34789999999999999999999999999999999995
No 23
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=91.31 E-value=0.23 Score=42.33 Aligned_cols=63 Identities=25% Similarity=0.468 Sum_probs=48.2
Q ss_pred CcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCccee------eccceEEEcceeeecCCccc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRR------VHQNYVIATSTQLDISGVKV 248 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRR------VnQryVIATSTKVDISgVki 248 (462)
-|..|+-+++++|.++||.-..|+.+..+-++|.| +|-+--.- -.|-=+|....-|++|||.+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeG---vN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~l 71 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI 71 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEETT---CSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEE
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeC---eEEEEeccccCcccCCCCCEEEEECCcCHHHEEE
Confidence 37789999999999999999999998779999988 66432111 22334555567899999977
No 24
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=90.87 E-value=0.21 Score=43.12 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=49.1
Q ss_pred CcCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcc-----eeeccceEEEcceeeecCCcccC
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPL-----RRVHQNYVIATSTQLDISGVKVP 249 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPL-----RRVnQryVIATSTKVDISgVkip 249 (462)
.|..|+-+++++|.++||.-..|+.+. .+-++|.| +|-+-- ..-.+-=++....-|++|||.+-
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG---vN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv 75 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPI 75 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT---SSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEB
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC---EEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEE
Confidence 378999999999999999999999986 68999988 664311 11124455666778999999773
No 25
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=88.83 E-value=0.29 Score=44.12 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=47.8
Q ss_pred CcCCCcEEEEecceecCce-EEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCcccCC-ccChhh
Q psy2461 183 SLKPGTIVILVAGVHKGKR-GVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPE-AANDHF 256 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKR-VVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip~-~ltDaY 256 (462)
.|..|+.|+|++|.++||. -..++.+. .+-++|-| ||- .+.+- +....-|++|||.|-+ ..+++-
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg---vn~---~Kp~G---~~~e~PIh~SNV~lv~~~~~k~~ 115 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER---VQR---EKANG---TTVHVGIHPSKVVITRLKLDKDR 115 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT---CEE---ECSSC---CEEECCBCGGGEEECC-CCCHHH
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee---eEe---EcCCC---ceEEeccCHHHEEEEcCcCCchH
Confidence 4889999999999999999 88898874 78999988 663 33332 3334468999997743 344443
No 26
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=88.46 E-value=0.36 Score=42.77 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=34.6
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV 103 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~ 103 (462)
-+.+|-|++++.|++.||-||.+.-++.+-.||.||-
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~ 42 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH 42 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT
T ss_pred ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC
Confidence 4679999999999999999999999999999999984
No 27
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=88.34 E-value=0.36 Score=42.32 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=44.6
Q ss_pred CcCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCcccC
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVP 249 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip 249 (462)
.|..|+.|++++|.++|++--.++.+. .+-++|.| +|- .+.+-. ..-.-|++|||.|-
T Consensus 42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg---vn~---kK~~Gg---~~e~pIh~SNV~i~ 100 (120)
T 1vq8_T 42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VTL---EKTDGE---EVPRPLDTSNVRVT 100 (120)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEE---ECSSSC---EEECCBCGGGEEEE
T ss_pred cccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC---eEe---EcCCCC---EEEeeechHHEEEE
Confidence 388999999999999999999999984 78999988 652 333333 22346799999763
No 28
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=88.16 E-value=0.38 Score=40.52 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=43.9
Q ss_pred CcEEEEecceecCceEEEEEeec-CceEEEeccccccCC-----cceeeccceEEEcceeeecCCccc
Q psy2461 187 GTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAM-----PLRRVHQNYVIATSTQLDISGVKV 248 (462)
Q Consensus 187 GTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGV-----PLRRVnQryVIATSTKVDISgVki 248 (462)
|+-+++++|.++||+-..|+.+. .+-++|.| +|-+ |-. -.+-=++....-|++|||.+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG---vN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~l 64 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKL 64 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---CEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEE
Confidence 67899999999999999999984 78999999 6654 211 22344555566789999876
No 29
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.54 E-value=0.53 Score=41.27 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=44.7
Q ss_pred CcCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCccc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKV 248 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVki 248 (462)
.|..|+-|++++|.++||.-..++.+. .+-++|.| ||-+- .|. +....-|++|||.|
T Consensus 45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg---vn~~k---~~G---~~~e~pIh~SNV~l 102 (121)
T 3j21_U 45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG---ATLRK---TNG---TEVFYPIHPSNVMI 102 (121)
T ss_dssp ECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT---CEEEC---SSS---CEEECCBCGGGEEE
T ss_pred ccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC---eEEEe---cCC---cEEEcccCHHHeEE
Confidence 477999999999999999999999985 78999988 55332 233 23455789999976
No 30
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=84.81 E-value=0.81 Score=40.53 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=44.3
Q ss_pred cCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCcccC
Q psy2461 184 LKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVP 249 (462)
Q Consensus 184 ItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip 249 (462)
|.-|+-|++++|.++|+.--.|+.+. .+-++|.| ||-+ ..|..-+ -.-|++|||.|-
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~~~---e~pIh~SNV~i~ 107 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK---VTKE---KVNGASV---PINLHPSKLVIT 107 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEET---CEEE---CSSSCEE---ECCBCGGGEEEE
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeC---eEEE---CCCCcEE---EcccchHHEEEE
Confidence 67899999999999999999999986 68999998 5543 3344322 336899999764
No 31
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=81.25 E-value=1.1 Score=40.22 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=44.4
Q ss_pred cCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCcccC
Q psy2461 184 LKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVP 249 (462)
Q Consensus 184 ItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip 249 (462)
|.-|+-|++++|.++|+.--.|+.+. .+-++|.| ||-+ ..|.. ..-.-|++|||.|-
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~---~~e~pIh~SNV~i~ 106 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK---ISKN---KLNGA---PYQIPLSASQLVLT 106 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CCEE---ETTTE---EECCCBCGGGEEEE
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC---eEEE---cCCCC---EEEcccchHHEEEE
Confidence 77899999999999999999999986 68999888 5543 33442 22346899999774
No 32
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=80.51 E-value=1.3 Score=40.23 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=45.0
Q ss_pred cCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCcccCC
Q psy2461 184 LKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPE 250 (462)
Q Consensus 184 ItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip~ 250 (462)
|..|+-|++++|.++|+.--.|+.+. .+-++|.| ||-+ .-|..- .-.-|++|||.|-+
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEG---VN~~---K~~G~~---~eapIh~SNV~i~~ 107 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVER---ITRE---KVNGST---VNVGIHPSKVVVTK 107 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEEE---CTTSCE---EECCBCGGGEEEEE
T ss_pred cCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeC---cEEE---eCCCCE---EecccchHHEEEEc
Confidence 77899999999999999999999986 68999888 5533 334432 23478999997643
No 33
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=77.89 E-value=0.25 Score=46.49 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=46.6
Q ss_pred CcCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcc-----eeeccceEEEcceeeecCCccc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPL-----RRVHQNYVIATSTQLDISGVKV 248 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPL-----RRVnQryVIATSTKVDISgVki 248 (462)
.|..|+-|++++|.++||.-..|+.+. .+-++|.| +|-+-- ..-.+-=+|....-|++|||.|
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEG---VN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~L 136 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML 136 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSS---CCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeC---CEEEEEecCCcccCCCCCEEEEecCcCHHHeEE
Confidence 488999999999999999999999984 78899988 775532 1111233444455788999866
No 34
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=66.09 E-value=7 Score=31.44 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=31.5
Q ss_pred hhccccCcCCCcEEEEecceecCceEEEEEeecCceEEE
Q psy2461 177 ARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLV 215 (462)
Q Consensus 177 ~rKLRsSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLV 215 (462)
+..||+-+.+|+-+-++.|+|+|.--..+|.-++-..++
T Consensus 11 ~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~ 49 (69)
T 2do3_A 11 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF 49 (69)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEE
T ss_pred HHHceeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEE
Confidence 568899999999999999999998777777765544443
No 35
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=49.03 E-value=13 Score=25.58 Aligned_cols=27 Identities=41% Similarity=0.849 Sum_probs=22.5
Q ss_pred CCCccccccCCCcccccCCCCCCcccccCCcccCCCC
Q psy2461 332 KLSVSPLDTSANGKISPASSLPPSLMSRGGKLCSPDA 368 (462)
Q Consensus 332 k~~~~~~~~~~ng~i~~~~~~~~~~~~~~~~~~~~~~ 368 (462)
|.|++.+.|+.||.- .+++|+ +|-||.
T Consensus 3 ktsistitiedngrc--tksipp--------icfpdg 29 (31)
T 2ab9_A 3 KTSISTITIEDNGRC--TKSIPP--------ICFPDG 29 (31)
T ss_dssp CSSCCCSSSCCCSSC--CSSSSC--------SSSSCC
T ss_pred ccceEEEEEecCCee--cccCCC--------cccCCC
Confidence 678999999999964 578888 788874
No 36
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=48.85 E-value=19 Score=31.07 Aligned_cols=41 Identities=32% Similarity=0.556 Sum_probs=32.8
Q ss_pred ccccccccccCCCcEEEEeecccCCceEEEEeecC-CceeEeec
Q psy2461 59 KHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLKKN 101 (462)
Q Consensus 59 qh~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~-SgLLlVT~ 101 (462)
..+++| .|..|+.+++++|.++||+=..|+-+. .+-++|.|
T Consensus 9 ~~~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG 50 (115)
T 2zjr_R 9 HHNDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG 50 (115)
T ss_dssp TTTSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS
T ss_pred ccceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC
Confidence 445666 589999999999999999998888874 55666654
No 37
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=33.85 E-value=22 Score=29.68 Aligned_cols=27 Identities=33% Similarity=0.656 Sum_probs=23.2
Q ss_pred eEEEeccccccCCcceeeccceEEEcc
Q psy2461 212 LLLVTGPFALNAMPLRRVHQNYVIATS 238 (462)
Q Consensus 212 LLLVTGPfklNGVPLRRVnQryVIATS 238 (462)
|+.|+|=+..++-|.|+.+|-||++-.
T Consensus 79 li~V~G~l~~~~~~~r~F~QtF~L~p~ 105 (120)
T 3ujm_A 79 VVQVTGELSNDGQPMRRFTQTFVLAAQ 105 (120)
T ss_dssp EEEEEEEEESTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCCceEEEEEEEEEc
Confidence 567788888899999999999999853
No 38
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=27.68 E-value=59 Score=28.36 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=27.5
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecC-CceeEee
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLKK 100 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~-SgLLlVT 100 (462)
.|..|+.+++++|.++|++--.|+-+. .+-++|.
T Consensus 42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEe
Confidence 377899999999999999988888874 4555553
No 39
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=27.55 E-value=61 Score=27.44 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=29.9
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecCCceeEeeccceE
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNF 105 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~nf 105 (462)
-|..|+-+++++|.++||.=..|+-+..+-++|. -+|.
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVe-GvN~ 40 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVE-GINL 40 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEET-TCSE
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEe-CeEE
Confidence 3678999999999999999988888866666664 4443
No 40
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=24.65 E-value=40 Score=28.96 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=22.5
Q ss_pred eEEEeccccccCCcceeeccceEEEcc
Q psy2461 212 LLLVTGPFALNAMPLRRVHQNYVIATS 238 (462)
Q Consensus 212 LLLVTGPfklNGVPLRRVnQryVIATS 238 (462)
|++|+|=+..++-|.|+.+|-||++-.
T Consensus 92 lI~V~G~l~~~~~~~~~F~QtF~L~p~ 118 (140)
T 3q90_A 92 VVQVMGLLSNNNQALRRFMQTFVLAPE 118 (140)
T ss_dssp EEEEEEEEECTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCccEEEEEEEEeec
Confidence 556778888888899999999999864
No 41
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.20 E-value=67 Score=28.89 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=28.3
Q ss_pred ccCCCcEEEEeecccCCce-EEEEeecC-CceeEeeccceE
Q psy2461 67 SLKPGTIVILVAGVHKGKR-GVFLKQLE-SGLLLKKNRVNF 105 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKR-vVfLKqL~-SgLLlVT~p~nf 105 (462)
.|..|+.+++++|.++|+. -..|+-+. .+-++| .-+|.
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~V-Egvn~ 87 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYI-ERVQR 87 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEE-TTCEE
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEE-eeeEe
Confidence 4889999999999999999 66677663 455555 34443
No 42
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=24.18 E-value=1.1e+02 Score=24.48 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=30.9
Q ss_pred cccccccccCCCcEEEEeecccCCceEEEEeecCCceeEe
Q psy2461 60 HARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLK 99 (462)
Q Consensus 60 h~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlV 99 (462)
..+.||+-..+|.-+-++.|+|.|..=..++.-..-..+.
T Consensus 10 p~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~ 49 (69)
T 2do3_A 10 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF 49 (69)
T ss_dssp CCCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEE
T ss_pred cHHHceeeccCCCeEEEeccEEcCceEEEEEEeCCEEEEE
Confidence 4567899999999999999999998766666654444443
No 43
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.71 E-value=80 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=28.9
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecC-CceeEeeccce
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLKKNRVN 104 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~-SgLLlVT~p~n 104 (462)
.|..|+-+++++|.++||.=..++-+. .+-++|. .+|
T Consensus 45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE-gvn 82 (121)
T 3j21_U 45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE-GAT 82 (121)
T ss_dssp ECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEET-TCE
T ss_pred ccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe-CeE
Confidence 477899999999999999988888874 5566654 444
No 44
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=22.11 E-value=27 Score=30.11 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=33.4
Q ss_pred ceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecCCccc
Q psy2461 195 GVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKV 248 (462)
Q Consensus 195 GrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVki 248 (462)
|-|+|. +++++..-+-++-+| =||+||+..+..-++.. .||.+++|
T Consensus 24 GVyQG~----I~~V~~~~ItL~kaF-rNGiplk~~~~EVtLsa---~DI~~L~I 69 (103)
T 2rm4_A 24 GVFQGL----IKQISAEEITIVRAF-RNGVPLRKQNAEVVLKC---TDIRSIDL 69 (103)
T ss_dssp CEEEEE----EEEEETTEEEEEEEE-ETTEECSCSSSCEEEET---TTEEEEEE
T ss_pred eEeeEE----EEEcccceeEEhhhh-hcCcCcCCCCceEEEEe---cchhheee
Confidence 566664 566665558888999 49999999988877654 46766665
No 45
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=21.46 E-value=48 Score=29.32 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEeccccccCCcceeeccceEEEc
Q psy2461 212 LLLVTGPFALNAMPLRRVHQNYVIAT 237 (462)
Q Consensus 212 LLLVTGPfklNGVPLRRVnQryVIAT 237 (462)
++.|+|=+++++-|.|+.+|-||++-
T Consensus 113 lI~V~G~l~~~~~~~r~F~QtFvL~p 138 (154)
T 3nv0_B 113 LLNVAGAVTVDGDSKRAFTQTLLLGV 138 (154)
T ss_dssp EEEEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCceeEEEEEEEEE
Confidence 34566666677778999999999984
No 46
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=20.30 E-value=92 Score=26.72 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=29.6
Q ss_pred ccCCCcEEEEeecccCCceEEEEeecC-CceeEeeccceE
Q psy2461 67 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLKKNRVNF 105 (462)
Q Consensus 67 SitpGtvLIiL~G~hrGKRvVfLKqL~-SgLLlVT~p~nf 105 (462)
.|..|.-+++++|.++||+=..|+-+. .+-++|.| +|.
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG-vN~ 44 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG-VNI 44 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT-SSE
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC-EEE
Confidence 477899999999999999988888875 46666643 443
No 47
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=20.08 E-value=55 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=18.8
Q ss_pred EEEeccccccCCcceeeccceEEEcc
Q psy2461 213 LLVTGPFALNAMPLRRVHQNYVIATS 238 (462)
Q Consensus 213 LLVTGPfklNGVPLRRVnQryVIATS 238 (462)
+.|+|=++.++-|.|+.+|-||++-.
T Consensus 87 I~V~G~~~~~~~~~~~F~qtF~L~p~ 112 (129)
T 1zo2_A 87 VFVTGDVRIDDGQPLKFSQVFNLMPS 112 (129)
T ss_dssp EEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCcceEEEEEEEEEc
Confidence 34455555556689999999999864
Done!