Query psy2461
Match_columns 462
No_of_seqs 296 out of 592
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 16:53:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2461.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2461hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2joya1 b.34.5.7 (A:1-96) Ribo 99.8 1.3E-20 9.6E-25 157.0 6.8 75 182-261 2-76 (96)
2 d2joya1 b.34.5.7 (A:1-96) Ribo 98.8 1.1E-09 8.4E-14 90.5 4.6 51 66-116 2-64 (96)
3 d2gycs1 b.34.5.1 (S:3-101) Rib 86.0 0.23 1.7E-05 40.2 3.2 62 184-248 2-69 (99)
4 d1vqot1 b.34.5.1 (T:1-119) Rib 85.8 0.3 2.2E-05 40.6 4.0 57 184-249 42-99 (119)
5 d2zjrr1 b.34.5.1 (R:4-113) Rib 84.4 0.4 2.9E-05 39.3 4.1 62 184-248 13-80 (110)
6 d2do3a1 b.34.5.5 (A:462-523) T 78.3 1.2 8.5E-05 33.5 4.4 40 177-216 4-43 (62)
7 d2j01y1 b.34.5.1 (Y:2-102) Rib 67.6 0.26 1.9E-05 39.9 -1.8 63 183-248 5-73 (101)
8 d2do3a1 b.34.5.5 (A:462-523) T 39.5 21 0.0015 26.4 4.9 40 61-100 4-43 (62)
9 d2zjrr1 b.34.5.1 (R:4-113) Rib 32.7 19 0.0014 28.9 4.0 41 59-101 6-47 (110)
10 d2gycs1 b.34.5.1 (S:3-101) Rib 32.5 17 0.0013 28.7 3.6 34 68-101 2-35 (99)
11 d1zo2a1 d.17.4.2 (A:10-126) Nu 23.3 21 0.0015 27.4 2.5 27 211-237 75-101 (117)
No 1
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.80 E-value=1.3e-20 Score=157.03 Aligned_cols=75 Identities=25% Similarity=0.436 Sum_probs=69.9
Q ss_pred cCcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecCCcccCCccChhhhhhhh
Q psy2461 182 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIK 261 (462)
Q Consensus 182 sSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip~~ltDaYFkkkK 261 (462)
+++++|+|+|+++|+|+||+||+|+++++|++||+||+.+||||++|+|++|+++|+++||| |...+++++++.-
T Consensus 2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i-----~~~a~~~~v~ka~ 76 (96)
T d2joya1 2 PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDI-----QKGASDEEVKKKL 76 (96)
T ss_dssp CSSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCC-----CSSCCHHHHHHHH
T ss_pred CceeccEEEEEeecCCCCCEEEEEEEecCCeEEEecccccCCcccEEEchHHEEeccEEEEc-----cCCCCcHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999875 5788999997543
No 2
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=98.82 E-value=1.1e-09 Score=90.49 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=46.9
Q ss_pred cccCCCcEEEEeecccCCceEEEEeecCCceeEeeccc------------eEEEEeeccccCC
Q psy2461 66 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV------------NFFLATRTVEKHS 116 (462)
Q Consensus 66 ~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~p~------------nfVIaTSTVEKhs 116 (462)
+++.+|+|+|+++|+|+||+||++++++++++||+||. +++++|+++.+.+
T Consensus 2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i~ 64 (96)
T d2joya1 2 PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ 64 (96)
T ss_dssp CSSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC
T ss_pred CceeccEEEEEeecCCCCCEEEEEEEecCCeEEEecccccCCcccEEEchHHEEeccEEEEcc
Confidence 46899999999999999999999999999999999993 2999999998854
No 3
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
Probab=86.05 E-value=0.23 Score=40.17 Aligned_cols=62 Identities=27% Similarity=0.505 Sum_probs=47.4
Q ss_pred cCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCccee--e---c-cceEEEcceeeecCCccc
Q psy2461 184 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRR--V---H-QNYVIATSTQLDISGVKV 248 (462)
Q Consensus 184 ItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRR--V---n-QryVIATSTKVDISgVki 248 (462)
|..|+-+++++|..+||+-..|+.++.+-++|.| +|-+--+. . + +-=+|..-.-|++|||.+
T Consensus 2 ikkGD~V~VisGkdKGK~G~V~~V~~~~~viVeG---vN~~kkh~Kp~~~~~~~Ggiv~~E~pIh~SNV~l 69 (99)
T d2gycs1 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI 69 (99)
T ss_dssp CCTTSEEECSSSTTTTCEEEEEEECTTSEEEETT---CCEECTTCCEECCCSCCCSSCCCSCCEETTTCCS
T ss_pred ccCCCEEEEeeCCCCCCceEEEEEECCCeEEEeC---eEEEEEEeCCCCCcCCCCCEEEEEeeEEhhHEEE
Confidence 5689999999999999999999999999999988 66443211 1 1 123455666789999976
No 4
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=85.79 E-value=0.3 Score=40.65 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=45.5
Q ss_pred cCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcceeeccceEEEcceeeecCCcccC
Q psy2461 184 LKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVP 249 (462)
Q Consensus 184 ItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip 249 (462)
|.-|+.|.|++|.|+||.-.+|+.+. ++-++|.| || +..-|+.-+ -.-|++|||.|-
T Consensus 42 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Veg---in---~~k~~~k~~---~~pIh~SNv~i~ 99 (119)
T d1vqot1 42 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VT---LEKTDGEEV---PRPLDTSNVRVT 99 (119)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CE---EECTTSCEE---ECCBCGGGEEEE
T ss_pred eeCCCEEEEeecCCCCCcceEEEEECCCCEEEEeC---cE---EEecCCcee---eccCchHHEEEE
Confidence 77899999999999999999999975 79999988 55 344455433 346999999763
No 5
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=84.44 E-value=0.4 Score=39.30 Aligned_cols=62 Identities=27% Similarity=0.410 Sum_probs=47.3
Q ss_pred cCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcce-e---ecc-ceEEEcceeeecCCccc
Q psy2461 184 LKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLR-R---VHQ-NYVIATSTQLDISGVKV 248 (462)
Q Consensus 184 ItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLR-R---VnQ-ryVIATSTKVDISgVki 248 (462)
|.-|+-+++++|.++||+-.+|+.+. .+-++|.| ||=+--. + -|+ -=+|-...-|++|||.+
T Consensus 13 ikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG---vN~~kkh~Kp~~~~~~Ggiv~~E~PIhiSNV~l 80 (110)
T d2zjrr1 13 FKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL 80 (110)
T ss_dssp SCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred eeCCCEEEEeecCCCCcceEEEEEECCCCEEEEeC---cEEEEEEecccccCCCCCeEeeeeeEEhhhEEE
Confidence 67899999999999999999999995 78999999 7754321 1 122 23444556789999876
No 6
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.33 E-value=1.2 Score=33.47 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=32.7
Q ss_pred hhccccCcCCCcEEEEecceecCceEEEEEeecCceEEEe
Q psy2461 177 ARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVT 216 (462)
Q Consensus 177 ~rKLRsSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVT 216 (462)
...||+-+.+|+-+-++.|+|+|.--..++.-++-.++.+
T Consensus 4 ~~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~S 43 (62)
T d2do3a1 4 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS 43 (62)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred hHHheeccCCCCeEEEeccEEcCccEEEEEEeCCEEEEEe
Confidence 4578999999999999999999998888887655555544
No 7
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}
Probab=67.57 E-value=0.26 Score=39.87 Aligned_cols=63 Identities=29% Similarity=0.382 Sum_probs=46.6
Q ss_pred CcCCCcEEEEecceecCceEEEEEeec-CceEEEeccccccCCcce-eec----cceEEEcceeeecCCccc
Q psy2461 183 SLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLVTGPFALNAMPLR-RVH----QNYVIATSTQLDISGVKV 248 (462)
Q Consensus 183 SItPGTVLIlLaGrhrGKRVVfLKQL~-SGLLLVTGPfklNGVPLR-RVn----QryVIATSTKVDISgVki 248 (462)
.|.-|+-+++++|.++||.-..|+.+. .+.++|.| +|=+--+ +.+ +--++.-..-|++|||.+
T Consensus 5 kIkkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG---vN~~kkh~k~~~~~~~Ggi~~~E~pIh~SNV~l 73 (101)
T d2j01y1 5 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP 73 (101)
T ss_dssp CSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTS---CCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEE
T ss_pred EEECCCEEEEeeCCCCCCeEEEEEEECCCCEEEEEc---ceEEEEeecCCCCCCccceEEEEccccHHHeEE
Confidence 377899999999999999999999986 68999998 7744321 111 223444455789999965
No 8
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.50 E-value=21 Score=26.36 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=31.1
Q ss_pred ccccccccCCCcEEEEeecccCCceEEEEeecCCceeEee
Q psy2461 61 ARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKK 100 (462)
Q Consensus 61 ~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT 100 (462)
.+.||+...+|.-+-++.|+|.|..=..++.-..-+++.+
T Consensus 4 ~~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~S 43 (62)
T d2do3a1 4 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS 43 (62)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEE
T ss_pred hHHheeccCCCCeEEEeccEEcCccEEEEEEeCCEEEEEe
Confidence 3568999999999999999999988777776544444443
No 9
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=32.71 E-value=19 Score=28.95 Aligned_cols=41 Identities=32% Similarity=0.562 Sum_probs=31.4
Q ss_pred ccccccccccCCCcEEEEeecccCCceEEEEeecC-CceeEeec
Q psy2461 59 KHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLE-SGLLLKKN 101 (462)
Q Consensus 59 qh~rklR~SitpGtvLIiL~G~hrGKRvVfLKqL~-SgLLlVT~ 101 (462)
.|..+|+ |.-|+-+++++|.++||+=..|+-+. .+-++|.|
T Consensus 6 ~~~~K~k--ikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeG 47 (110)
T d2zjrr1 6 HHNDKLH--FKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG 47 (110)
T ss_dssp TTTSCCS--SCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS
T ss_pred cccceee--eeCCCEEEEeecCCCCcceEEEEEECCCCEEEEeC
Confidence 3444443 66799999999999999999999985 56666644
No 10
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
Probab=32.49 E-value=17 Score=28.67 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=28.8
Q ss_pred cCCCcEEEEeecccCCceEEEEeecCCceeEeec
Q psy2461 68 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKN 101 (462)
Q Consensus 68 itpGtvLIiL~G~hrGKRvVfLKqL~SgLLlVT~ 101 (462)
|..|+-+++++|..+||+=..|+-|+.+-++|.|
T Consensus 2 ikkGD~V~VisGkdKGK~G~V~~V~~~~~viVeG 35 (99)
T d2gycs1 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG 35 (99)
T ss_dssp CCTTSEEECSSSTTTTCEEEEEEECTTSEEEETT
T ss_pred ccCCCEEEEeeCCCCCCceEEEEEECCCeEEEeC
Confidence 4578999999999999998889999877766654
No 11
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=23.25 E-value=21 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=23.2
Q ss_pred ceEEEeccccccCCcceeeccceEEEc
Q psy2461 211 GLLLVTGPFALNAMPLRRVHQNYVIAT 237 (462)
Q Consensus 211 GLLLVTGPfklNGVPLRRVnQryVIAT 237 (462)
=|+.|+|=+..|+-|-|+.+|.|+++.
T Consensus 75 ili~V~G~~~~~~~~~~~F~q~F~L~~ 101 (117)
T d1zo2a1 75 SIVFVTGDVRIDDGQPLKFSQVFNLMP 101 (117)
T ss_dssp EEEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred EEEEEEEEEEeCCCCcceeEEEEEEeE
Confidence 456788988999999999999999875
Done!