RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2461
(462 letters)
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 82.8 bits (205), Expect = 4e-20
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD 242
+++ G I + V G G + V + ++ +LVTGP + + RRV+ ++ T ++D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62
Query: 243 ISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKK 281
I + A+D ++ + + + ++ K
Sbjct: 63 I-----QKGASDEEVKKKLE------ESNLTEYMKEKIK 90
Score = 42.4 bits (100), Expect = 7e-06
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 67 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLL 98
+++ G I + V G G + V + ++ +L
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVL 34
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 31.7 bits (72), Expect = 0.11
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 229 VHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKG---DKRSLFAKRKKRAYK 285
HQ V+ +L S P A FF +IK ++Q +G + + + + RA
Sbjct: 63 AHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRA-- 120
Query: 286 VSKARKVMQKDMDEQLLKVIKVH--PEKKILLSYPP 319
+ K M++ +E+ K + ++ S P
Sbjct: 121 KLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPE 156
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 28.5 bits (64), Expect = 0.24
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 177 ARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVT 216
A+ LR K G V ++AG +G G+ ++ E+ ++L +
Sbjct: 4 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFS 43
Score = 27.3 bits (61), Expect = 0.60
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 61 ARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFF 106
A+ LR K G V ++AG +G G+ ++ +++N V F
Sbjct: 4 AQELRKYFKMGDHVKVIAGRFEGDTGLIVR-------VEENFVILF 42
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 28.9 bits (65), Expect = 0.34
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 26/114 (22%)
Query: 63 RLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEKHSPHPNAH 122
R++ +K G V++ +G +KG+ G + +L KK V VE + A
Sbjct: 1 RVKMHVKKGDTVLVASGKYKGRVGKVKE-----VLPKKYAV-------IVEGVNIVKKAV 48
Query: 123 PKSPKPKKP--IYKIKPIGGEKNGKERKVLIRKPKAYYPTK------DKIKKVR 168
SPK + I K P+ KV P PT+ + KK+R
Sbjct: 49 RVSPKYPQGGFIEKEAPL------HASKVRPICPACGKPTRVRKKFLENGKKIR 96
Score = 25.1 bits (55), Expect = 9.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 179 RLRSSLKPGTIVILVAGVHKGKRGVFLK 206
R++ +K G V++ +G +KG+ G +
Sbjct: 1 RVKMHVKKGDTVLVASGKYKGRVGKVKE 28
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 27.3 bits (61), Expect = 1.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 184 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTG 217
++ VI++ G KGKRG L SG ++V G
Sbjct: 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG 35
Score = 25.8 bits (57), Expect = 4.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 68 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRV 103
++ VI++ G KGKRG +L +V
Sbjct: 2 IRRDDEVIVLTGKDKGKRGKVKN------VLSSGKV 31
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 26.6 bits (59), Expect = 2.7
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 68 LKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEKHSPHPNAHPKSPK 127
K G VI+++G HKG+ G L L + +V + K+ +P+ +
Sbjct: 13 FKKGDTVIVLSGKHKGQTGKVLL-----ALPRDQKV-VVEGVNVITKNVKPSMTNPQGGQ 66
Query: 128 PKKPIY 133
++ +
Sbjct: 67 EQRELA 72
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 87
Score = 25.3 bits (55), Expect = 5.2
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 293 MQKDMDEQLLKVIKVHPEKKILLS 316
D + ++ +LS
Sbjct: 54 YLDVGDYVIARIENFDRSIDPVLS 77
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 26.4 bits (57), Expect = 5.7
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 57 FRKHARRLRSSLKPGTIVILVAGVHK 82
F++ + L ++PG+ ++ A
Sbjct: 8 FQRRRQALVEQMQPGSAALIFAAPEV 33
Score = 26.4 bits (57), Expect = 5.7
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 173 FRKHARRLRSSLKPGTIVILVAGVHK 198
F++ + L ++PG+ ++ A
Sbjct: 8 FQRRRQALVEQMQPGSAALIFAAPEV 33
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 26.4 bits (58), Expect = 5.9
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 234 VIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSL 275
V+AT+ + G ++ KK + D ++
Sbjct: 33 VLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAM 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,751,618
Number of extensions: 86093
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 20
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)