BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2463
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETA 65
IVG G+AG +LA RLS VLLIEAG+ P+ W+ P P LQ +DW Y T
Sbjct: 22 IVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWN--PAAWPALQGRSYDWDYRTE 79
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
QA ++G W RG+++GGS ++ + + G P DF+AW
Sbjct: 80 AQAGTAG----RAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAW 119
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFPSFWSNIPLTSP-ILQRSEHDWQYETA 65
+VGAG AG V+A RL+ +VL++EAG D + PL +P ++ S DW Y T
Sbjct: 7 VVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTT 66
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
QA G +PRG++LGGS ++ + G EDF+ +
Sbjct: 67 AQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYA 107
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
IVG GT+GC LA LS + VL++E G P+ + N+ + + + + +T +
Sbjct: 31 IVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQTPVERFV 90
Query: 71 SGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSK 120
SG ++V RG+VLGG+ IN + + F A G +D V++
Sbjct: 91 SGDGIDDV----RGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQ 136
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG-----DFPSFWSNIPLTSPILQRSEHDWQYE 63
IVG GTAG +A RL+ + TVL++EAG D P + P ++ L+ S++DW Y+
Sbjct: 11 IVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITT--PSSAMDLRNSKYDWAYK 68
Query: 64 T--APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
T + + K N RGK LGGS +N G F+ W
Sbjct: 69 TTMVRRDDYERIEKPNT----RGKTLGGSSSLNYFTWVPGHKATFDQW 112
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
IVG GT+GC LA LS + VL++E G P+ + N+ + + + +T +
Sbjct: 31 IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFV 90
Query: 71 SGGLKNNVSFWPRGKVLGGSGQIN 94
S +NV RG+VLGG+ IN
Sbjct: 91 SEDGIDNV----RGRVLGGTSIIN 110
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
IVG GT+GC LA LS + VL++E G P+ + N+ + + + +T +
Sbjct: 31 IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFV 90
Query: 71 SGGLKNNVSFWPRGKVLGGSGQIN 94
S +NV RG+VLGG+ IN
Sbjct: 91 SEDGIDNV----RGRVLGGTSIIN 110
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 104 EDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTAT-----PGLTST 158
ED+ + P+ + + + V + Y ++ + N+V + + +SL AT PG+
Sbjct: 74 EDYHSQNPYHNAVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPGVNQ- 132
Query: 159 IPAIVKSKHYLPKLY 173
P ++K+ HYL LY
Sbjct: 133 -PFLIKTNHYLATLY 146
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 104 EDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTAT-----PGLTST 158
ED+ + P+ + + + V + Y ++ + N+V + + +SL AT PG+
Sbjct: 65 EDYHSQNPYHNAVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPGVNQ- 123
Query: 159 IPAIVKSKHYLPKLY 173
P ++K+ HYL LY
Sbjct: 124 -PFLIKTNHYLATLY 137
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 30.8 bits (68), Expect = 0.39, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 53 LQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
L S +DW Y PQ N + +++ R KV+GG N + ED + W
Sbjct: 64 LLESGYDWDYPIEPQENGNSFMRH-----ARAKVMGGCSSHNACIAFWAPREDLDEW 115
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 30.4 bits (67), Expect = 0.53, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 53 LQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
L S +DW Y PQ N + +++ R KV+GG N + ED + W
Sbjct: 64 LLESGYDWDYPIEPQENGNSFMRH-----ARAKVMGGCSSHNSCIAFWAPREDLDEW 115
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 30.4 bits (67), Expect = 0.53, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 53 LQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
L S +DW Y PQ N + +++ R KV+GG N + ED + W
Sbjct: 64 LLESGYDWDYPIEPQENGNSFMRH-----ARAKVMGGCSSHNSCIAFWAPREDLDEW 115
>pdb|2ZMU|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 9.1
pdb|2ZMW|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
Length = 223
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 45 NIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFW 81
N P PI+Q DW+ T S G LK +V+ +
Sbjct: 124 NFPADGPIMQNQSVDWEPSTEKITASDGVLKGDVTMY 160
>pdb|3MGF|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
Length = 218
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 45 NIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFW 81
N P PI+Q DW+ T S G LK +V+ +
Sbjct: 127 NFPADGPIMQNQSVDWEPSTEKITASDGVLKGDVTMY 163
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 5 YLSLENIVGAGTAGCVLA---NRLSLHH-TVLLIEAG-DFPSFWSNIPLTSPI 52
Y S IVG+G GC+LA N + ++LI+AG ++ + +I T P+
Sbjct: 226 YPSYNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPV 278
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex
With Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAG 37
I+G+G AG LA RL+ H V+++ G
Sbjct: 13 IIGSGAAGLSLALRLADQHQVIVLSKG 39
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAG 37
I+G+G AG LA RL+ H V+++ G
Sbjct: 13 IIGSGAAGLSLALRLADQHQVIVLSKG 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,167,329
Number of Sequences: 62578
Number of extensions: 270215
Number of successful extensions: 648
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 19
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)