BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2463
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSF-WSNIPLTSPILQRSEH-DWQYETAP 66
IVGAG+AGCVLANRLS V L+EAG + ++PL +L S+ +W ++TAP
Sbjct: 6 IVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAFQTAP 65
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
Q + L FWPRGK LGGS IN + + G ED++AW
Sbjct: 66 QQH----LNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAW 104
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSF-WSNIPLTSPILQRSEH-DWQYETAP 66
IVGAG+AGCVLANRLS V L+EAG + ++PL +L S+ +W ++TAP
Sbjct: 6 IVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAFQTAP 65
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
Q N +G FWPRGK LGGS IN + + G +D+ AW
Sbjct: 66 QQNLNG----RSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAW 104
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
IVGAG+AGCVLA+RLS H +LL+EAG D F S + ++ WQ+ET P
Sbjct: 9 IVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYAWQFETQP 68
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+A GL + PRG+VLGGS IN + + G D++ W
Sbjct: 69 EA----GLDSRSLHCPRGRVLGGSSSINGMVYVRGHACDYDEW 107
>sp|Q9AJD6|PNO_MICLT Pyridoxine 4-oxidase OS=Microbacterium luteolum GN=pno PE=1 SV=3
Length = 507
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNI-PLTSPILQRSEHDWQYETAPQ 67
I+GAG+AG ++A RLS VLLIEAG PS + P P +Q +DW Y+T PQ
Sbjct: 8 IIGAGSAGALIAARLSEDPARNVLLIEAGGRPSDPDILKPSMWPAIQHRSYDWDYKTTPQ 67
Query: 68 ANSSGGLKNNVSF-WPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
++G SF W RGK LGGS ++ + + G P DF AW
Sbjct: 68 EGAAG-----RSFAWARGKGLGGSSLLHAMGYMRGHPADFAAW 105
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNIPLTSPI---------LQRSEHD 59
+VGAG+AGCVLA RL+ VLL+EAG + L+ I L ++
Sbjct: 45 VVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYN 104
Query: 60 WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW----GPWFDY 115
W Y T Q GL V +WPRG+V GGS +N + + G ED+E W +DY
Sbjct: 105 WCYHTEVQR----GLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDY 160
Query: 116 GNV----SKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATP 153
+ K GH +G R D P+RVS T P
Sbjct: 161 AHCLPYFRKAQGHELGASRYRGA-----DGPLRVSRGKTNHP 197
>sp|Q9VGP2|NINAG_DROME Neither inactivation nor afterpotential protein G OS=Drosophila
melanogaster GN=ninaG PE=2 SV=2
Length = 581
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%)
Query: 30 TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGG 89
+VLLIEAG S IPL + Q+ +DW + + PQ +SS GL PRGK LGG
Sbjct: 72 SVLLIEAGGQFGLLSRIPLLTTFQQKGINDWSFLSVPQKHSSRGLIERRQCLPRGKGLGG 131
Query: 90 SGQINLLNHYDGRPEDFEAW 109
S +N + H+DG DF++W
Sbjct: 132 SANLNYMLHFDGHGPDFDSW 151
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 32/164 (19%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPI---------LQRSEHD 59
+VGAG+AGCVLA+RL+ +H VLL+EAG + L I L +++
Sbjct: 47 VVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCDDKYN 106
Query: 60 WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW----GPWFDY 115
W Y T PQ G+ + V +WPRG+V GGS +N + + G ED+ W +DY
Sbjct: 107 WYYHTEPQP----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDY 162
Query: 116 GNVSKVLGHIIGYDRKTN---VGNNVE---DFPVRVSLSDTATP 153
H + Y RK +G N+ D P+ VS T P
Sbjct: 163 -------AHCLPYFRKAQRHELGANMYRGGDGPLHVSRGKTNHP 199
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG-DFPSFWSNIP--LTSPILQRSEHDWQYETA 65
IVGAG+AGCVLA+RLS H VLL+EAG S + +P L+ P + ++ WQ+ET
Sbjct: 9 IVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYP-MNTEKYAWQFETV 67
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+ GL PRGKVLGGS IN + + G DF+ W
Sbjct: 68 AEE----GLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEW 107
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPI---------LQRSEHD 59
+VGAG+AGCVLANRL+ +H VLL+EAG + L I L +++
Sbjct: 50 VVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCDDKYN 109
Query: 60 WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS 119
W Y T Q GL V +WPRG+V GGS +N + + G ED+ W G
Sbjct: 110 WYYHTEAQP----GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNR---WHRQGAEG 162
Query: 120 KVLGHIIGYDRKTN---VGNNVE---DFPVRVSLSDTATP 153
H + Y RK +G N+ D P+ VS T P
Sbjct: 163 WDYAHCLPYFRKAQKHELGANMYRGGDGPLHVSRGKTNHP 202
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG-DFPSFWSNIP--LTSPILQRSEHDWQYETA 65
IVGAG+AGCVLA+RLS H+VLL+EAG S + +P L+ P + ++ WQ+ET
Sbjct: 9 IVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYP-MNSEKYAWQFETD 67
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+A+ L PRGKVLGGS IN + + G DF+ W
Sbjct: 68 AEAD----LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEW 107
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG-DFPSFWSNIP--LTSPILQRSEHDWQYETA 65
IVGAG+AGCVLA+RLS H+VLL+EAG S + +P L+ P + ++ WQ+ET
Sbjct: 9 IVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYP-MNSEKYAWQFETD 67
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+A+ L PRGKVLGGS IN + + G DF+ W
Sbjct: 68 AEAD----LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEW 107
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
+VG G+AG V+A+RLS TV+ +EAG D F +P L RSE DW Y T P
Sbjct: 9 VVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFI-GVPAAFSKLFRSEIDWDYLTEP 67
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW----GPWFDYGNVSKVL 122
Q L +WPRGKVLGGS +N + G D++ W GP + Y +V
Sbjct: 68 QPE----LDGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADV---- 119
Query: 123 GHIIGYDRK 131
+GY R+
Sbjct: 120 ---LGYFRR 125
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
+VG G+AG V+A+RLS TV+ +EAG D F +P L RSE DW Y T P
Sbjct: 9 VVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFI-GVPAAFSKLFRSEIDWDYLTEP 67
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW----GPWFDYGNVSKVL 122
Q L +WPRGKVLGGS +N + G D++ W GP + Y +V
Sbjct: 68 QPE----LDGREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADV---- 119
Query: 123 GHIIGYDRK 131
+GY R+
Sbjct: 120 ---LGYFRR 125
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
++G G+AG V+A+RLS VLLIEAG + IP S+ D++Y T P+
Sbjct: 69 VIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTEPER 128
Query: 69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ +WPRGKVLGG+ +N + + G ED++ W
Sbjct: 129 MACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWA 170
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
++G G+AG V+A+RLS VLLIEAG + IP S+ D++Y T P+
Sbjct: 69 VIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTEPEP 128
Query: 69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ +WPRGKVLGG+ +N + + G ED++ W
Sbjct: 129 MACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWA 170
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
I+G+G+AG LA RLS ++V++IEAG DF F + + ++W Y + P
Sbjct: 7 IIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEP 66
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+AN L N PRGKV+GGS IN + + G EDF W
Sbjct: 67 EAN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRW 105
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
I+G+G+AG LA RLS ++VL+IEAG DF F + + ++W Y + P
Sbjct: 7 IIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEP 66
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+ N L N PRGKV+GGS IN + + G EDF W
Sbjct: 67 EPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRW 105
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
I+G+G+AG LA RLS ++VL+IEAG DF F + + ++W Y + P
Sbjct: 7 IIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEP 66
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+ N L N PRGKV+GGS IN + + G EDF W
Sbjct: 67 EPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRW 105
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
I+G+G+AG LA RLS ++VL+IEAG DF F + + ++W Y + P
Sbjct: 7 IIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEP 66
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+ N L N PRGKV+GGS IN + + G EDF W
Sbjct: 67 EPN----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRW 105
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
IVG+G+AG +A RLS ++V++IEAG DF F + + ++W Y + P
Sbjct: 7 IVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEP 66
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+ N L N PRGKV+GGS IN L + G EDF W
Sbjct: 67 EPN----LDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRW 105
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 12/107 (11%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P L P LQ ++W YE
Sbjct: 7 IIGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYP-LQGRRYNWAYE 65
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
T P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 66 TEPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDEWA 108
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
I+G G+AG VL RLS + + VL++EAG D+P +P L P + +DW YE
Sbjct: 9 IIGGGSAGSVLGGRLSEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNKL-YDWIYE 67
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
T P+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 68 TTPEPHMDGRKVGHA----RGKVLGGSSSINGMIYQRGNPMDYEKW 109
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
IVGAG+AG VLA+RL+ TVLL+EAG D+ F + +P L P LQ ++W YE
Sbjct: 10 IVGAGSAGNVLASRLAEDADVTVLLLEAGGPDYRFDFRTQMPAALAYP-LQGRRYNWAYE 68
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLG 123
T P+ + + N RGK LGGS IN + + G D++ W N + +
Sbjct: 69 TDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWTYL-- 122
Query: 124 HIIGYDRKT---NVGNNVE---DFPVRVSLSDTATPGLTSTIPAIVKS 165
+ Y RK ++G N D PV V+ T+ PG A+V++
Sbjct: 123 DCLPYFRKAETRDIGANAYHGGDGPVHVT---TSKPGNNPLFAAMVEA 167
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
I+G G+AG VL +R+S + + VL++EAG D+P +P L P + +DW YE
Sbjct: 9 IIGGGSAGSVLGSRISEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNKL-YDWIYE 67
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
T P+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 68 TTPEPHMDGRKVGHA----RGKVLGGSSSINGMIYQRGNPMDYEKW 109
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ +VLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWA 108
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHW 107
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWA 108
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWA 108
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHW 107
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHW 107
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHW 107
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHW 107
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P+ + + N RGK LGGS IN + + G DF+ W
Sbjct: 67 DPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHW 107
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ + TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGH 124
P+ + N RGK LGGS IN + + G D + W N S +
Sbjct: 67 EPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPSLENWSYL--D 120
Query: 125 IIGYDRKT---NVGNNV---EDFPVRVSLSDTATPGLTSTIPAIVKS 165
+ Y RK +VG N D PV V+ T+ PG+ A++++
Sbjct: 121 CLPYYRKAETRDVGENDYHGGDGPVSVT---TSKPGVNPLFEAMIEA 164
>sp|Q8NUM0|BETA_STAAW Choline dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=betA
PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q6G664|BETA_STAAS Choline dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ + TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGH 124
P+ + N RGK LGGS IN + + G D + W N S +
Sbjct: 67 EPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYL--D 120
Query: 125 IIGYDRKT---NVGNNV---EDFPVRVSLSDTATPGLTSTIPAIVKS 165
+ Y RK +VG N D PV V+ T+ PG+ A++++
Sbjct: 121 CLPYYRKAETRDVGENDYHGGDGPVSVT---TSKPGVNPLFEAMIEA 164
>sp|A8Z5A4|BETA_STAAT Choline dehydrogenase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q6GDJ1|BETA_STAAR Choline dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|P60337|BETA_STAAN Choline dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=betA PE=1 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|P60336|BETA_STAAM Choline dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=betA PE=1 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|A6QK99|BETA_STAAE Choline dehydrogenase OS=Staphylococcus aureus (strain Newman)
GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q5HCU1|BETA_STAAC Choline dehydrogenase OS=Staphylococcus aureus (strain COL) GN=betA
PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q2YWJ5|BETA_STAAB Choline dehydrogenase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|A5IW37|BETA_STAA9 Choline dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=betA
PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q2FV11|BETA_STAA8 Choline dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q2FDP9|BETA_STAA3 Choline dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|A6U4Z2|BETA_STAA2 Choline dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=betA
PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|A7X6Z3|BETA_STAA1 Choline dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=betA PE=3 SV=1
Length = 569
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWS-NIPLTSPILQRSE---HDWQYET 64
I+G G+AG VL NRLS VL++EAG FW I + + ++ S +DW Y T
Sbjct: 12 IIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDWIYST 71
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
+ + G + RGKVLGGS IN + + G P D+E W
Sbjct: 72 DEEPHMGGRKVAHA----RGKVLGGSSSINGMIYQRGNPMDYEGWA 113
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFP-SFWSNIPLTSPI-LQRSEHDWQYET 64
I+GAG+AG VLA RL+ + TVLL+EAG D+ F + +P LQ ++W YET
Sbjct: 7 IIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYET 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGH 124
P+ + N RGK LGGS IN + + G D + W N S +
Sbjct: 67 EPEPF----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYL--D 120
Query: 125 IIGYDRKT---NVGNNVE---DFPVRVSLSDTATPGLTSTIPAIVKS 165
+ Y RK +VG N D PV V+ T+ PG+ A++++
Sbjct: 121 CLPYYRKAETRDVGENDYHGGDGPVSVT---TSKPGVNPLFEAMIEA 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,854,733
Number of Sequences: 539616
Number of extensions: 3237769
Number of successful extensions: 6177
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 5899
Number of HSP's gapped (non-prelim): 152
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)