Query psy2463
Match_columns 177
No_of_seqs 173 out of 1629
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 16:55:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 3.8E-40 8.3E-45 292.8 10.8 165 4-168 55-227 (623)
2 TIGR01810 betA choline dehydro 100.0 1.3E-35 2.8E-40 264.7 13.4 163 8-175 1-174 (532)
3 PRK02106 choline dehydrogenase 100.0 1.8E-35 3.8E-40 265.3 14.0 165 5-174 4-180 (560)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 9.1E-36 2E-40 246.4 7.6 163 7-174 1-172 (296)
5 COG2303 BetA Choline dehydroge 100.0 9.2E-35 2E-39 260.0 12.8 169 3-175 4-183 (542)
6 PLN02785 Protein HOTHEAD 100.0 4.3E-28 9.4E-33 218.7 11.4 141 4-169 53-195 (587)
7 TIGR02462 pyranose_ox pyranose 99.6 1.4E-15 3.1E-20 136.3 8.4 121 7-130 1-162 (544)
8 COG0644 FixC Dehydrogenases (f 98.7 2.4E-08 5.3E-13 86.4 4.8 36 5-40 2-38 (396)
9 PRK10015 oxidoreductase; Provi 98.6 7.3E-08 1.6E-12 84.5 5.2 36 4-39 3-39 (429)
10 PRK10157 putative oxidoreducta 98.6 8.7E-08 1.9E-12 83.9 5.2 35 5-39 4-39 (428)
11 PF01946 Thi4: Thi4 family; PD 98.5 1.7E-07 3.6E-12 75.2 4.0 35 5-39 16-51 (230)
12 PRK13369 glycerol-3-phosphate 98.4 2.6E-07 5.6E-12 82.5 5.2 38 1-38 1-39 (502)
13 TIGR00292 thiazole biosynthesi 98.4 2.1E-07 4.5E-12 76.4 4.1 38 3-40 18-56 (254)
14 TIGR02032 GG-red-SF geranylger 98.4 3.5E-07 7.5E-12 74.5 4.9 33 7-39 1-34 (295)
15 PRK14694 putative mercuric red 98.4 3.5E-07 7.6E-12 80.8 5.2 38 1-38 1-39 (468)
16 TIGR02023 BchP-ChlP geranylger 98.4 2.8E-07 6E-12 79.4 4.4 31 7-37 1-32 (388)
17 PRK08773 2-octaprenyl-3-methyl 98.4 3.6E-07 7.8E-12 78.5 5.1 39 1-39 1-40 (392)
18 PF03486 HI0933_like: HI0933-l 98.4 3.8E-07 8.1E-12 79.8 4.5 34 7-40 1-35 (409)
19 PLN00093 geranylgeranyl diphos 98.4 4.3E-07 9.2E-12 80.2 4.8 36 4-39 37-73 (450)
20 PF01494 FAD_binding_3: FAD bi 98.4 4.7E-07 1E-11 75.2 4.9 36 6-41 1-37 (356)
21 PRK08274 tricarballylate dehyd 98.3 5.5E-07 1.2E-11 79.3 5.1 33 6-38 4-37 (466)
22 COG1635 THI4 Ribulose 1,5-bisp 98.3 4.4E-07 9.5E-12 73.0 4.0 33 5-37 29-62 (262)
23 PRK12266 glpD glycerol-3-phosp 98.3 6E-07 1.3E-11 80.3 5.2 38 1-38 1-39 (508)
24 PRK04176 ribulose-1,5-biphosph 98.3 5.4E-07 1.2E-11 74.1 4.3 36 4-39 23-59 (257)
25 COG1233 Phytoene dehydrogenase 98.3 5.9E-07 1.3E-11 80.0 4.3 34 6-39 3-37 (487)
26 PF00890 FAD_binding_2: FAD bi 98.3 7.5E-07 1.6E-11 77.0 4.7 33 8-40 1-34 (417)
27 PRK07364 2-octaprenyl-6-methox 98.3 8.8E-07 1.9E-11 76.4 5.0 37 4-40 16-53 (415)
28 PRK06185 hypothetical protein; 98.3 9.6E-07 2.1E-11 76.1 5.1 39 1-39 1-40 (407)
29 PF13450 NAD_binding_8: NAD(P) 98.3 1.1E-06 2.4E-11 58.0 4.2 31 11-41 1-32 (68)
30 PF01266 DAO: FAD dependent ox 98.3 9.6E-07 2.1E-11 73.4 4.6 31 8-38 1-32 (358)
31 PRK07608 ubiquinone biosynthes 98.3 1.1E-06 2.4E-11 75.0 4.9 36 5-40 4-40 (388)
32 PRK06116 glutathione reductase 98.3 1.1E-06 2.4E-11 77.1 4.9 33 5-37 3-36 (450)
33 PRK11259 solA N-methyltryptoph 98.3 1.1E-06 2.4E-11 74.7 4.7 34 6-39 3-37 (376)
34 TIGR02028 ChlP geranylgeranyl 98.2 1E-06 2.2E-11 76.4 4.4 32 7-38 1-33 (398)
35 PRK08020 ubiF 2-octaprenyl-3-m 98.2 1.1E-06 2.4E-11 75.3 4.5 35 4-38 3-38 (391)
36 PRK09126 hypothetical protein; 98.2 1.3E-06 2.7E-11 74.9 4.6 34 6-39 3-37 (392)
37 TIGR01421 gluta_reduc_1 glutat 98.2 1.2E-06 2.6E-11 77.2 4.5 33 5-37 1-34 (450)
38 PTZ00363 rab-GDP dissociation 98.2 1.3E-06 2.7E-11 77.2 4.6 36 5-40 3-39 (443)
39 PRK07121 hypothetical protein; 98.2 1.5E-06 3.3E-11 77.2 4.9 35 5-39 19-54 (492)
40 TIGR01424 gluta_reduc_2 glutat 98.2 1.5E-06 3.2E-11 76.4 4.6 33 5-37 1-34 (446)
41 PRK08010 pyridine nucleotide-d 98.2 1.5E-06 3.3E-11 76.1 4.7 33 6-38 3-36 (441)
42 PF12831 FAD_oxidored: FAD dep 98.2 1.4E-06 3.1E-11 76.3 4.4 33 8-40 1-34 (428)
43 PRK05976 dihydrolipoamide dehy 98.2 1.8E-06 3.8E-11 76.4 4.9 34 4-37 2-36 (472)
44 PRK07494 2-octaprenyl-6-methox 98.2 1.7E-06 3.7E-11 74.0 4.7 35 5-39 6-41 (388)
45 PRK12409 D-amino acid dehydrog 98.2 1.7E-06 3.7E-11 74.8 4.6 33 7-39 2-35 (410)
46 TIGR01377 soxA_mon sarcosine o 98.2 1.7E-06 3.8E-11 73.5 4.6 33 7-39 1-34 (380)
47 TIGR02730 carot_isom carotene 98.2 1.9E-06 4E-11 76.6 4.9 34 7-40 1-35 (493)
48 TIGR01790 carotene-cycl lycope 98.2 1.7E-06 3.7E-11 74.0 4.6 32 8-39 1-33 (388)
49 PLN02463 lycopene beta cyclase 98.2 1.8E-06 3.8E-11 76.3 4.7 36 4-39 26-62 (447)
50 COG0562 Glf UDP-galactopyranos 98.2 1.7E-06 3.6E-11 73.0 4.3 35 6-40 1-36 (374)
51 PRK11101 glpA sn-glycerol-3-ph 98.2 2.2E-06 4.7E-11 77.4 5.2 36 3-38 3-39 (546)
52 PF05834 Lycopene_cycl: Lycope 98.2 1.7E-06 3.6E-11 74.5 4.3 33 8-40 1-36 (374)
53 PTZ00058 glutathione reductase 98.2 2E-06 4.3E-11 78.0 5.0 35 3-37 45-80 (561)
54 COG2081 Predicted flavoprotein 98.2 1.9E-06 4.1E-11 74.5 4.5 36 5-40 2-38 (408)
55 TIGR03329 Phn_aa_oxid putative 98.2 2.2E-06 4.7E-11 75.6 5.0 36 4-39 22-60 (460)
56 TIGR03364 HpnW_proposed FAD de 98.2 2.1E-06 4.6E-11 72.9 4.7 33 7-39 1-34 (365)
57 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.1E-06 4.6E-11 74.3 4.7 33 7-39 2-35 (377)
58 PRK06481 fumarate reductase fl 98.2 2.2E-06 4.8E-11 76.7 4.9 35 5-39 60-95 (506)
59 PRK06370 mercuric reductase; V 98.2 2.5E-06 5.4E-11 75.2 5.1 33 6-38 5-38 (463)
60 PRK07251 pyridine nucleotide-d 98.2 2.2E-06 4.9E-11 74.9 4.8 33 6-38 3-36 (438)
61 PRK12842 putative succinate de 98.2 2.5E-06 5.4E-11 77.4 5.1 39 1-39 4-43 (574)
62 PRK06416 dihydrolipoamide dehy 98.2 2.4E-06 5.1E-11 75.2 4.8 34 5-38 3-37 (462)
63 PRK05192 tRNA uridine 5-carbox 98.1 2.5E-06 5.3E-11 77.9 4.9 34 5-38 3-37 (618)
64 TIGR01988 Ubi-OHases Ubiquinon 98.1 2.4E-06 5.1E-11 72.6 4.5 32 8-39 1-33 (385)
65 PRK07045 putative monooxygenas 98.1 2.9E-06 6.3E-11 72.8 4.9 37 4-40 3-40 (388)
66 PRK06467 dihydrolipoamide dehy 98.1 2.8E-06 6.2E-11 75.2 5.0 35 4-38 2-37 (471)
67 PRK05714 2-octaprenyl-3-methyl 98.1 2.3E-06 5.1E-11 73.8 4.3 33 6-38 2-35 (405)
68 PRK08013 oxidoreductase; Provi 98.1 2.7E-06 5.9E-11 73.5 4.6 34 6-39 3-37 (400)
69 PRK05249 soluble pyridine nucl 98.1 3.1E-06 6.7E-11 74.4 4.9 34 5-38 4-38 (461)
70 PLN02985 squalene monooxygenas 98.1 2.9E-06 6.2E-11 76.2 4.7 36 4-39 41-77 (514)
71 TIGR01292 TRX_reduct thioredox 98.1 3.3E-06 7.2E-11 69.1 4.7 32 7-38 1-33 (300)
72 KOG1298|consensus 98.1 2.9E-06 6.2E-11 73.2 4.3 37 5-41 44-81 (509)
73 PRK13339 malate:quinone oxidor 98.1 3.2E-06 7E-11 75.6 4.8 36 1-36 1-39 (497)
74 PLN02697 lycopene epsilon cycl 98.1 2.9E-06 6.3E-11 76.4 4.6 34 5-38 107-141 (529)
75 PRK11728 hydroxyglutarate oxid 98.1 3E-06 6.6E-11 73.0 4.5 34 6-39 2-38 (393)
76 TIGR01350 lipoamide_DH dihydro 98.1 3.2E-06 7E-11 74.2 4.5 31 6-36 1-32 (461)
77 PLN02507 glutathione reductase 98.1 3.5E-06 7.5E-11 75.3 4.7 33 4-36 23-56 (499)
78 PRK12837 3-ketosteroid-delta-1 98.1 3.6E-06 7.8E-11 75.4 4.7 35 4-39 5-40 (513)
79 TIGR01789 lycopene_cycl lycope 98.1 3.6E-06 7.7E-11 72.5 4.5 31 8-38 1-34 (370)
80 TIGR02053 MerA mercuric reduct 98.1 3.8E-06 8.1E-11 74.0 4.7 32 7-38 1-33 (463)
81 PRK06115 dihydrolipoamide dehy 98.1 3.9E-06 8.5E-11 74.2 4.8 31 6-36 3-34 (466)
82 COG3573 Predicted oxidoreducta 98.1 4.4E-06 9.6E-11 71.2 4.8 38 4-41 3-41 (552)
83 PRK08849 2-octaprenyl-3-methyl 98.1 4E-06 8.6E-11 72.0 4.7 33 6-38 3-36 (384)
84 KOG0029|consensus 98.1 4.2E-06 9.1E-11 75.0 4.8 36 4-39 13-49 (501)
85 PRK08132 FAD-dependent oxidore 98.1 4.5E-06 9.7E-11 75.1 5.0 38 2-39 19-57 (547)
86 PTZ00367 squalene epoxidase; P 98.1 4.1E-06 8.9E-11 76.1 4.7 35 4-38 31-66 (567)
87 PLN02464 glycerol-3-phosphate 98.1 4.4E-06 9.6E-11 76.7 4.9 35 4-38 69-104 (627)
88 PRK13748 putative mercuric red 98.1 4.4E-06 9.6E-11 75.2 4.8 33 5-37 97-130 (561)
89 PRK08244 hypothetical protein; 98.1 4.9E-06 1.1E-10 73.8 5.0 35 6-40 2-37 (493)
90 PRK12834 putative FAD-binding 98.1 5E-06 1.1E-10 75.0 5.0 34 5-38 3-37 (549)
91 PRK05732 2-octaprenyl-6-methox 98.0 4.5E-06 9.8E-11 71.4 4.4 33 5-37 2-38 (395)
92 PRK07818 dihydrolipoamide dehy 98.0 5.2E-06 1.1E-10 73.3 4.7 32 6-37 4-36 (466)
93 TIGR02733 desat_CrtD C-3',4' d 98.0 5.5E-06 1.2E-10 73.4 4.8 34 7-40 2-36 (492)
94 PRK08958 sdhA succinate dehydr 98.0 6.1E-06 1.3E-10 75.2 5.1 35 5-39 6-41 (588)
95 PRK06292 dihydrolipoamide dehy 98.0 5.8E-06 1.2E-10 72.7 4.7 32 6-37 3-35 (460)
96 PRK07333 2-octaprenyl-6-methox 98.0 5.2E-06 1.1E-10 71.2 4.4 33 7-39 2-37 (403)
97 PRK12835 3-ketosteroid-delta-1 98.0 5.8E-06 1.3E-10 75.3 4.9 36 4-39 9-45 (584)
98 TIGR03143 AhpF_homolog putativ 98.0 6.3E-06 1.4E-10 74.6 5.0 34 5-38 3-37 (555)
99 PRK07190 hypothetical protein; 98.0 6.6E-06 1.4E-10 73.4 5.0 36 5-40 4-40 (487)
100 PTZ00052 thioredoxin reductase 98.0 5.9E-06 1.3E-10 73.8 4.7 33 4-36 3-36 (499)
101 PRK06183 mhpA 3-(3-hydroxyphen 98.0 8.2E-06 1.8E-10 73.3 5.5 37 4-40 8-45 (538)
102 TIGR01989 COQ6 Ubiquinone bios 98.0 5.1E-06 1.1E-10 72.8 4.1 32 7-38 1-37 (437)
103 PRK08243 4-hydroxybenzoate 3-m 98.0 6.5E-06 1.4E-10 70.9 4.6 34 6-39 2-36 (392)
104 TIGR01373 soxB sarcosine oxida 98.0 7.2E-06 1.6E-10 70.7 4.9 35 4-38 28-65 (407)
105 PRK06452 sdhA succinate dehydr 98.0 7E-06 1.5E-10 74.5 5.0 35 5-39 4-39 (566)
106 PRK06847 hypothetical protein; 98.0 7.4E-06 1.6E-10 69.6 4.8 37 1-39 1-38 (375)
107 PRK07804 L-aspartate oxidase; 98.0 6.9E-06 1.5E-10 74.1 4.8 36 4-39 14-50 (541)
108 PRK09078 sdhA succinate dehydr 98.0 7.2E-06 1.6E-10 74.9 4.9 36 4-39 10-46 (598)
109 PRK06327 dihydrolipoamide dehy 98.0 7E-06 1.5E-10 72.7 4.7 32 5-36 3-35 (475)
110 PRK06617 2-octaprenyl-6-methox 98.0 6.8E-06 1.5E-10 70.4 4.3 32 7-38 2-34 (374)
111 PRK08275 putative oxidoreducta 98.0 7.5E-06 1.6E-10 74.0 4.7 35 5-39 8-45 (554)
112 COG0654 UbiH 2-polyprenyl-6-me 98.0 7.4E-06 1.6E-10 70.6 4.4 32 6-37 2-34 (387)
113 PRK08850 2-octaprenyl-6-methox 98.0 6.8E-06 1.5E-10 71.0 4.1 32 6-37 4-36 (405)
114 COG0665 DadA Glycine/D-amino a 98.0 9.1E-06 2E-10 69.1 4.8 36 5-40 3-39 (387)
115 PTZ00139 Succinate dehydrogena 98.0 8E-06 1.7E-10 74.9 4.7 35 5-39 28-63 (617)
116 PRK06184 hypothetical protein; 98.0 8E-06 1.7E-10 72.7 4.6 35 6-40 3-38 (502)
117 PRK07588 hypothetical protein; 98.0 9E-06 2E-10 69.8 4.7 33 8-40 2-35 (391)
118 TIGR01423 trypano_reduc trypan 98.0 7.7E-06 1.7E-10 73.0 4.4 33 5-37 2-36 (486)
119 PRK06834 hypothetical protein; 98.0 7.9E-06 1.7E-10 72.9 4.5 34 6-39 3-37 (488)
120 PLN02661 Putative thiazole syn 98.0 8.3E-06 1.8E-10 70.0 4.4 37 3-39 89-127 (357)
121 PRK07803 sdhA succinate dehydr 98.0 8.5E-06 1.8E-10 74.8 4.7 35 5-39 7-42 (626)
122 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 8.4E-06 1.8E-10 70.4 4.4 34 6-39 2-36 (390)
123 TIGR02734 crtI_fam phytoene de 98.0 6.7E-06 1.5E-10 73.0 3.9 32 9-40 1-33 (502)
124 PLN02576 protoporphyrinogen ox 98.0 1E-05 2.2E-10 71.6 5.1 37 4-40 10-48 (496)
125 PRK07843 3-ketosteroid-delta-1 98.0 1.1E-05 2.4E-10 73.0 5.3 36 4-39 5-41 (557)
126 COG1249 Lpd Pyruvate/2-oxoglut 98.0 9.8E-06 2.1E-10 71.8 4.7 35 4-38 2-37 (454)
127 PRK06126 hypothetical protein; 97.9 1.1E-05 2.3E-10 72.6 5.0 36 4-39 5-41 (545)
128 PRK07057 sdhA succinate dehydr 97.9 9.7E-06 2.1E-10 73.9 4.8 35 5-39 11-46 (591)
129 PLN02546 glutathione reductase 97.9 9.3E-06 2E-10 73.6 4.6 33 4-36 77-110 (558)
130 PLN02268 probable polyamine ox 97.9 1E-05 2.3E-10 70.4 4.8 33 8-40 2-35 (435)
131 PRK06175 L-aspartate oxidase; 97.9 9.3E-06 2E-10 71.3 4.5 35 5-40 3-38 (433)
132 PRK06854 adenylylsulfate reduc 97.9 9.1E-06 2E-10 74.4 4.5 35 5-39 10-47 (608)
133 PRK00711 D-amino acid dehydrog 97.9 1E-05 2.2E-10 69.9 4.5 32 8-39 2-34 (416)
134 PRK01747 mnmC bifunctional tRN 97.9 9.4E-06 2E-10 74.8 4.5 33 6-38 260-293 (662)
135 PRK10262 thioredoxin reductase 97.9 1.3E-05 2.9E-10 67.1 5.0 37 1-37 1-38 (321)
136 PRK12844 3-ketosteroid-delta-1 97.9 1.2E-05 2.5E-10 72.9 4.9 36 4-39 4-40 (557)
137 PRK08401 L-aspartate oxidase; 97.9 1.1E-05 2.4E-10 71.5 4.6 32 7-38 2-34 (466)
138 PRK07236 hypothetical protein; 97.9 1.5E-05 3.2E-10 68.5 5.2 37 3-39 3-40 (386)
139 PRK06753 hypothetical protein; 97.9 1.2E-05 2.6E-10 68.3 4.6 33 8-40 2-35 (373)
140 TIGR01320 mal_quin_oxido malat 97.9 1.1E-05 2.3E-10 72.0 4.4 33 7-39 1-36 (483)
141 PLN00128 Succinate dehydrogena 97.9 1.1E-05 2.5E-10 74.1 4.7 35 5-39 49-84 (635)
142 TIGR01984 UbiH 2-polyprenyl-6- 97.9 1.3E-05 2.7E-10 68.4 4.6 33 8-40 1-35 (382)
143 PRK07573 sdhA succinate dehydr 97.9 1.4E-05 3E-10 73.6 5.0 34 5-38 34-68 (640)
144 PRK07208 hypothetical protein; 97.9 1.4E-05 3.1E-10 70.4 4.9 34 6-39 4-38 (479)
145 TIGR01813 flavo_cyto_c flavocy 97.9 1.3E-05 2.9E-10 70.0 4.6 33 8-40 1-35 (439)
146 PRK08163 salicylate hydroxylas 97.9 1.6E-05 3.4E-10 68.2 5.0 34 6-39 4-38 (396)
147 TIGR01812 sdhA_frdA_Gneg succi 97.9 1.2E-05 2.7E-10 72.6 4.6 32 8-39 1-33 (566)
148 TIGR00562 proto_IX_ox protopor 97.9 1.4E-05 3E-10 69.9 4.7 34 7-40 3-41 (462)
149 PRK14727 putative mercuric red 97.9 1.6E-05 3.5E-10 70.5 4.9 35 4-38 14-49 (479)
150 PRK08626 fumarate reductase fl 97.9 1.5E-05 3.2E-10 73.6 4.7 36 5-40 4-40 (657)
151 PRK07233 hypothetical protein; 97.9 1.8E-05 3.9E-10 68.2 4.9 33 8-40 1-34 (434)
152 PLN02676 polyamine oxidase 97.9 1.7E-05 3.7E-10 70.7 4.9 40 1-40 21-62 (487)
153 PF13738 Pyr_redox_3: Pyridine 97.9 1.7E-05 3.7E-10 61.6 4.4 31 10-40 1-33 (203)
154 PLN02815 L-aspartate oxidase 97.9 1.7E-05 3.6E-10 72.5 4.9 36 4-39 27-62 (594)
155 PTZ00153 lipoamide dehydrogena 97.9 1.6E-05 3.5E-10 73.4 4.8 32 6-37 116-148 (659)
156 PRK08641 sdhA succinate dehydr 97.9 1.6E-05 3.4E-10 72.6 4.6 34 6-39 3-37 (589)
157 PRK05945 sdhA succinate dehydr 97.9 1.5E-05 3.3E-10 72.4 4.5 35 5-39 2-39 (575)
158 PRK06263 sdhA succinate dehydr 97.9 1.5E-05 3.3E-10 71.8 4.5 35 4-39 5-40 (543)
159 PRK05257 malate:quinone oxidor 97.9 1.7E-05 3.8E-10 70.9 4.7 36 4-39 3-41 (494)
160 PTZ00383 malate:quinone oxidor 97.8 1.9E-05 4.2E-10 70.7 4.9 36 4-39 43-81 (497)
161 PRK12839 hypothetical protein; 97.8 2.1E-05 4.6E-10 71.5 5.2 36 4-39 6-42 (572)
162 PRK08294 phenol 2-monooxygenas 97.8 1.8E-05 4E-10 72.7 4.8 36 4-39 30-67 (634)
163 PRK11883 protoporphyrinogen ox 97.8 2E-05 4.4E-10 68.4 4.7 33 8-40 2-37 (451)
164 TIGR01438 TGR thioredoxin and 97.8 1.9E-05 4.1E-10 70.3 4.6 33 5-37 1-34 (484)
165 PRK05329 anaerobic glycerol-3- 97.8 2.1E-05 4.4E-10 69.2 4.6 33 6-38 2-35 (422)
166 PRK11445 putative oxidoreducta 97.8 2E-05 4.4E-10 67.1 4.3 32 7-38 2-33 (351)
167 PRK06996 hypothetical protein; 97.8 2.2E-05 4.8E-10 67.8 4.5 35 4-38 9-48 (398)
168 PRK07395 L-aspartate oxidase; 97.8 2.1E-05 4.5E-10 71.3 4.4 35 4-39 7-42 (553)
169 PRK07538 hypothetical protein; 97.8 2.4E-05 5.2E-10 67.8 4.6 32 8-39 2-34 (413)
170 PRK12845 3-ketosteroid-delta-1 97.8 2.6E-05 5.7E-10 70.8 5.0 35 4-39 14-49 (564)
171 PF07992 Pyr_redox_2: Pyridine 97.8 2.7E-05 5.9E-10 60.2 4.4 31 8-38 1-32 (201)
172 PTZ00306 NADH-dependent fumara 97.8 2.9E-05 6.3E-10 75.9 5.2 36 4-39 407-443 (1167)
173 COG0492 TrxB Thioredoxin reduc 97.8 2.9E-05 6.4E-10 65.4 4.5 34 5-38 2-37 (305)
174 COG1231 Monoamine oxidase [Ami 97.8 3.2E-05 6.8E-10 67.9 4.7 36 4-39 5-41 (450)
175 PRK08071 L-aspartate oxidase; 97.8 2.5E-05 5.5E-10 70.0 4.3 34 5-39 2-36 (510)
176 PRK09077 L-aspartate oxidase; 97.8 3.5E-05 7.6E-10 69.4 5.0 36 4-39 6-41 (536)
177 TIGR00551 nadB L-aspartate oxi 97.7 3.4E-05 7.4E-10 68.7 4.7 34 6-39 2-35 (488)
178 PRK09231 fumarate reductase fl 97.7 3.3E-05 7.2E-10 70.4 4.6 35 5-39 3-40 (582)
179 PRK06069 sdhA succinate dehydr 97.7 3.6E-05 7.9E-10 69.9 4.6 36 4-39 3-42 (577)
180 TIGR01176 fum_red_Fp fumarate 97.7 3.3E-05 7.2E-10 70.3 4.4 35 5-39 2-39 (580)
181 PRK15317 alkyl hydroperoxide r 97.7 4.3E-05 9.3E-10 68.5 5.0 33 4-36 209-242 (517)
182 TIGR02061 aprA adenosine phosp 97.7 3.8E-05 8.3E-10 70.4 4.5 32 8-39 1-37 (614)
183 PRK13800 putative oxidoreducta 97.7 4E-05 8.6E-10 73.1 4.6 35 5-39 12-47 (897)
184 PRK08205 sdhA succinate dehydr 97.7 4.6E-05 9.9E-10 69.4 4.8 35 5-39 4-38 (583)
185 PLN02172 flavin-containing mon 97.7 5.8E-05 1.3E-09 67.0 5.2 34 6-39 10-44 (461)
186 PRK06134 putative FAD-binding 97.7 5.9E-05 1.3E-09 68.7 5.2 36 4-39 10-46 (581)
187 PRK05868 hypothetical protein; 97.7 5.5E-05 1.2E-09 65.0 4.7 33 8-40 3-36 (372)
188 PRK05335 tRNA (uracil-5-)-meth 97.7 5.9E-05 1.3E-09 66.4 4.8 34 7-40 3-37 (436)
189 COG1053 SdhA Succinate dehydro 97.7 5.3E-05 1.2E-09 68.8 4.6 37 4-40 4-41 (562)
190 PF01134 GIDA: Glucose inhibit 97.6 5.2E-05 1.1E-09 65.9 4.2 27 8-34 1-28 (392)
191 COG0578 GlpA Glycerol-3-phosph 97.6 6.2E-05 1.3E-09 67.7 4.8 36 5-40 11-47 (532)
192 TIGR03140 AhpF alkyl hydropero 97.6 6.4E-05 1.4E-09 67.4 4.8 33 4-36 210-243 (515)
193 TIGR02731 phytoene_desat phyto 97.6 7.5E-05 1.6E-09 65.4 4.8 32 8-39 1-33 (453)
194 PRK12416 protoporphyrinogen ox 97.6 7E-05 1.5E-09 65.8 4.6 33 8-40 3-42 (463)
195 COG3380 Predicted NAD/FAD-depe 97.6 9E-05 2E-09 61.5 4.4 32 8-39 3-35 (331)
196 PRK12843 putative FAD-binding 97.6 0.00011 2.3E-09 67.0 5.2 35 5-39 15-50 (578)
197 TIGR03378 glycerol3P_GlpB glyc 97.6 9.5E-05 2.1E-09 64.9 4.6 33 7-39 1-34 (419)
198 PRK06912 acoL dihydrolipoamide 97.6 9.5E-05 2.1E-09 65.2 4.6 31 8-38 2-33 (458)
199 COG2072 TrkA Predicted flavopr 97.6 0.0001 2.2E-09 65.1 4.8 35 5-39 7-43 (443)
200 PRK06475 salicylate hydroxylas 97.5 9.3E-05 2E-09 63.9 4.4 33 7-39 3-36 (400)
201 PRK07846 mycothione reductase; 97.5 9.4E-05 2E-09 65.3 4.2 31 6-38 1-32 (451)
202 PRK07512 L-aspartate oxidase; 97.5 8.7E-05 1.9E-09 66.6 4.0 34 5-39 8-41 (513)
203 TIGR00136 gidA glucose-inhibit 97.5 0.00013 2.7E-09 66.8 4.6 33 7-39 1-34 (617)
204 TIGR01372 soxA sarcosine oxida 97.5 0.00014 2.9E-09 70.1 4.9 36 5-40 162-198 (985)
205 TIGR03315 Se_ygfK putative sel 97.5 0.00015 3.3E-09 69.7 5.2 35 5-39 536-571 (1012)
206 KOG2415|consensus 97.5 0.0001 2.3E-09 64.5 3.7 37 4-40 74-117 (621)
207 PLN02568 polyamine oxidase 97.5 0.00016 3.5E-09 65.4 5.1 35 6-40 5-45 (539)
208 PLN02927 antheraxanthin epoxid 97.5 0.00014 3.1E-09 67.2 4.7 34 5-38 80-114 (668)
209 TIGR00275 flavoprotein, HI0933 97.5 8.4E-05 1.8E-09 64.6 3.0 31 10-40 1-32 (400)
210 TIGR03452 mycothione_red mycot 97.5 0.00013 2.9E-09 64.3 4.3 30 6-37 2-32 (452)
211 KOG0685|consensus 97.4 0.00016 3.5E-09 63.8 4.6 37 4-40 19-57 (498)
212 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00017 3.6E-09 63.6 4.7 33 7-39 1-34 (433)
213 COG0579 Predicted dehydrogenas 97.4 0.00014 3E-09 64.0 4.2 36 5-40 2-40 (429)
214 KOG2820|consensus 97.4 0.00013 2.9E-09 62.1 3.8 36 4-39 5-41 (399)
215 TIGR01811 sdhA_Bsu succinate d 97.4 0.00014 3E-09 66.6 4.1 30 9-38 1-31 (603)
216 PRK12810 gltD glutamate syntha 97.4 0.00024 5.2E-09 63.0 5.2 35 5-39 142-177 (471)
217 PLN02529 lysine-specific histo 97.4 0.00021 4.5E-09 66.8 4.8 36 4-39 158-194 (738)
218 PRK12831 putative oxidoreducta 97.4 0.00027 5.8E-09 62.7 5.1 34 5-38 139-173 (464)
219 TIGR03219 salicylate_mono sali 97.3 0.00025 5.4E-09 61.5 4.6 33 8-40 2-36 (414)
220 COG3349 Uncharacterized conser 97.3 0.00023 5.1E-09 63.3 4.4 33 8-40 2-35 (485)
221 PLN02328 lysine-specific histo 97.3 0.00027 5.9E-09 66.6 4.8 36 5-40 237-273 (808)
222 KOG3855|consensus 97.3 0.00022 4.8E-09 62.1 3.9 35 5-39 35-74 (481)
223 TIGR02732 zeta_caro_desat caro 97.3 0.00034 7.3E-09 62.2 4.8 33 8-40 1-34 (474)
224 PRK07845 flavoprotein disulfid 97.3 0.00033 7.1E-09 62.0 4.6 31 8-38 3-34 (466)
225 PLN02612 phytoene desaturase 97.3 0.00041 8.8E-09 63.1 5.2 34 6-39 93-127 (567)
226 PF00070 Pyr_redox: Pyridine n 97.3 0.00064 1.4E-08 45.6 4.9 33 9-41 2-35 (80)
227 PF04820 Trp_halogenase: Trypt 97.3 0.00025 5.3E-09 62.9 3.6 33 8-40 1-37 (454)
228 PF00996 GDI: GDP dissociation 97.2 0.0004 8.8E-09 61.3 4.8 37 5-41 3-40 (438)
229 KOG0405|consensus 97.2 0.00034 7.4E-09 60.0 4.1 36 2-37 16-52 (478)
230 PRK11749 dihydropyrimidine deh 97.2 0.00045 9.7E-09 60.9 5.0 36 5-40 139-175 (457)
231 KOG4716|consensus 97.2 0.00035 7.5E-09 59.9 4.0 37 3-39 16-53 (503)
232 TIGR01316 gltA glutamate synth 97.2 0.00048 1E-08 60.8 5.0 35 5-39 132-167 (449)
233 KOG2614|consensus 97.2 0.00049 1.1E-08 59.9 4.4 34 6-39 2-36 (420)
234 COG3075 GlpB Anaerobic glycero 97.2 0.0005 1.1E-08 58.6 4.3 34 6-39 2-36 (421)
235 KOG1399|consensus 97.2 0.00047 1E-08 61.1 4.3 35 6-40 6-41 (448)
236 PRK12775 putative trifunctiona 97.1 0.00064 1.4E-08 65.7 5.1 34 6-39 430-464 (1006)
237 TIGR02485 CobZ_N-term precorri 97.1 0.00037 8E-09 60.9 3.1 29 11-39 1-30 (432)
238 PRK12778 putative bifunctional 97.1 0.0007 1.5E-08 63.4 5.1 34 5-38 430-464 (752)
239 PRK12769 putative oxidoreducta 97.1 0.00064 1.4E-08 62.7 4.6 34 6-39 327-361 (654)
240 PRK08255 salicylyl-CoA 5-hydro 97.0 0.00061 1.3E-08 64.0 4.2 32 8-39 2-36 (765)
241 PRK12814 putative NADPH-depend 97.0 0.00099 2.2E-08 61.6 5.3 34 6-39 193-227 (652)
242 PRK12779 putative bifunctional 97.0 0.00092 2E-08 64.3 5.1 34 6-39 306-340 (944)
243 PRK09853 putative selenate red 97.0 0.00099 2.1E-08 64.2 5.1 34 6-39 539-573 (1019)
244 PRK12770 putative glutamate sy 97.0 0.0013 2.9E-08 55.9 5.3 35 6-40 18-53 (352)
245 PLN03000 amine oxidase 97.0 0.0012 2.6E-08 62.8 5.2 36 5-40 183-219 (881)
246 COG1232 HemY Protoporphyrinoge 97.0 0.00098 2.1E-08 59.0 4.4 33 8-40 2-37 (444)
247 PLN02487 zeta-carotene desatur 96.9 0.0013 2.7E-08 60.0 5.0 34 7-40 76-110 (569)
248 COG1148 HdrA Heterodisulfide r 96.9 0.0013 2.8E-08 58.6 4.5 34 7-40 125-159 (622)
249 PLN02976 amine oxidase 96.9 0.0014 3E-08 65.1 5.0 36 4-39 691-727 (1713)
250 KOG2665|consensus 96.8 0.00093 2E-08 56.8 3.0 37 4-40 46-85 (453)
251 PRK13977 myosin-cross-reactive 96.8 0.0016 3.4E-08 59.3 4.6 34 6-39 22-60 (576)
252 PLN02852 ferredoxin-NADP+ redu 96.8 0.0021 4.6E-08 57.6 5.3 35 6-40 26-63 (491)
253 PF00743 FMO-like: Flavin-bind 96.8 0.0018 3.8E-08 58.6 4.6 33 8-40 3-36 (531)
254 TIGR01317 GOGAT_sm_gam glutama 96.8 0.0022 4.7E-08 57.3 5.0 34 6-39 143-177 (485)
255 TIGR01318 gltD_gamma_fam gluta 96.7 0.0023 5E-08 56.8 4.8 35 5-39 140-175 (467)
256 KOG4254|consensus 96.7 0.0017 3.7E-08 57.4 3.8 37 4-40 12-49 (561)
257 PRK09754 phenylpropionate diox 96.7 0.0023 4.9E-08 55.3 4.6 34 7-40 4-40 (396)
258 PRK12809 putative oxidoreducta 96.6 0.0023 5E-08 59.0 4.5 34 6-39 310-344 (639)
259 PRK06567 putative bifunctional 96.6 0.0029 6.4E-08 60.8 4.7 32 6-37 383-415 (1028)
260 KOG1335|consensus 96.6 0.0025 5.5E-08 55.4 3.9 32 5-36 38-70 (506)
261 PRK09564 coenzyme A disulfide 96.5 0.0031 6.6E-08 55.1 4.4 32 8-39 2-36 (444)
262 PRK13984 putative oxidoreducta 96.4 0.0045 9.7E-08 56.5 5.0 35 5-39 282-317 (604)
263 PRK13512 coenzyme A disulfide 96.4 0.0045 9.7E-08 54.4 4.5 33 8-40 3-38 (438)
264 PRK12771 putative glutamate sy 96.4 0.0045 9.7E-08 56.1 4.7 33 6-38 137-170 (564)
265 COG0029 NadB Aspartate oxidase 96.3 0.0035 7.6E-08 55.9 3.5 33 8-40 9-41 (518)
266 COG0445 GidA Flavin-dependent 96.3 0.003 6.6E-08 57.0 3.2 35 6-40 4-39 (621)
267 KOG2960|consensus 96.2 0.0012 2.5E-08 53.5 0.0 32 6-37 76-110 (328)
268 PF06039 Mqo: Malate:quinone o 96.2 0.0059 1.3E-07 54.2 4.4 36 5-40 2-40 (488)
269 KOG2311|consensus 96.2 0.004 8.7E-08 55.6 3.3 33 5-37 27-60 (679)
270 PRK09897 hypothetical protein; 96.2 0.0064 1.4E-07 55.1 4.6 32 7-38 2-36 (534)
271 PTZ00318 NADH dehydrogenase-li 96.2 0.0065 1.4E-07 53.1 4.5 37 4-40 8-45 (424)
272 PRK04965 NADH:flavorubredoxin 96.1 0.011 2.3E-07 50.7 5.2 33 7-39 3-38 (377)
273 PTZ00188 adrenodoxin reductase 96.0 0.012 2.6E-07 52.9 5.3 34 7-40 40-75 (506)
274 KOG0042|consensus 96.0 0.0028 6E-08 57.2 1.3 37 4-40 65-102 (680)
275 KOG3851|consensus 95.9 0.0078 1.7E-07 51.4 3.3 36 4-39 37-75 (446)
276 PF02558 ApbA: Ketopantoate re 95.9 0.014 2.9E-07 43.4 4.3 30 9-38 1-31 (151)
277 TIGR03169 Nterm_to_SelD pyridi 95.7 0.013 2.7E-07 49.9 4.0 33 8-40 1-37 (364)
278 PF13434 K_oxygenase: L-lysine 95.6 0.011 2.4E-07 50.5 3.4 35 6-40 2-38 (341)
279 COG0569 TrkA K+ transport syst 95.5 0.019 4E-07 46.3 4.2 32 8-39 2-34 (225)
280 KOG2404|consensus 95.4 0.016 3.6E-07 49.6 3.6 33 7-39 10-43 (477)
281 COG1206 Gid NAD(FAD)-utilizing 95.4 0.014 3.1E-07 50.0 3.2 34 7-40 4-38 (439)
282 COG0446 HcaD Uncharacterized N 95.4 0.023 4.9E-07 48.2 4.5 35 7-41 137-172 (415)
283 COG5044 MRS6 RAB proteins gera 95.4 0.027 5.8E-07 48.8 4.8 40 1-40 1-41 (434)
284 KOG2844|consensus 95.3 0.022 4.8E-07 52.7 4.3 34 4-37 37-72 (856)
285 KOG1276|consensus 95.3 0.026 5.6E-07 49.7 4.4 35 6-40 11-48 (491)
286 KOG4405|consensus 95.2 0.022 4.8E-07 50.0 3.9 37 4-40 6-43 (547)
287 COG0493 GltD NADPH-dependent g 94.9 0.027 6E-07 50.1 3.6 33 7-39 124-157 (457)
288 PF13454 NAD_binding_9: FAD-NA 94.7 0.036 7.8E-07 41.8 3.5 29 10-38 1-35 (156)
289 PRK06249 2-dehydropantoate 2-r 94.7 0.06 1.3E-06 45.2 5.1 37 1-38 1-38 (313)
290 PRK09754 phenylpropionate diox 94.7 0.049 1.1E-06 47.0 4.7 33 8-40 146-179 (396)
291 COG2509 Uncharacterized FAD-de 94.7 0.04 8.6E-07 48.9 4.0 37 5-41 17-59 (486)
292 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.052 1.1E-06 41.1 4.1 29 9-37 2-31 (157)
293 PRK05708 2-dehydropantoate 2-r 94.5 0.054 1.2E-06 45.4 4.5 31 8-38 4-35 (305)
294 PRK04965 NADH:flavorubredoxin 94.5 0.058 1.3E-06 46.2 4.6 34 7-40 142-176 (377)
295 PRK05976 dihydrolipoamide dehy 94.4 0.06 1.3E-06 47.6 4.7 34 7-40 181-215 (472)
296 KOG2853|consensus 94.3 0.04 8.7E-07 47.6 3.2 36 5-40 85-125 (509)
297 COG3634 AhpF Alkyl hydroperoxi 94.3 0.027 5.8E-07 48.8 2.0 33 4-36 209-243 (520)
298 PRK07251 pyridine nucleotide-d 94.2 0.072 1.6E-06 46.6 4.7 33 8-40 159-192 (438)
299 COG2907 Predicted NAD/FAD-bind 94.2 0.06 1.3E-06 46.5 3.9 38 4-41 6-43 (447)
300 TIGR01350 lipoamide_DH dihydro 94.1 0.078 1.7E-06 46.5 4.7 34 7-40 171-205 (461)
301 PF02737 3HCDH_N: 3-hydroxyacy 94.0 0.084 1.8E-06 41.0 4.2 31 9-39 2-33 (180)
302 PRK06912 acoL dihydrolipoamide 94.0 0.086 1.9E-06 46.5 4.8 33 8-40 172-205 (458)
303 KOG2755|consensus 93.9 0.047 1E-06 45.5 2.7 31 9-39 2-35 (334)
304 PRK06467 dihydrolipoamide dehy 93.8 0.096 2.1E-06 46.5 4.7 33 8-40 176-209 (471)
305 TIGR02053 MerA mercuric reduct 93.7 0.1 2.2E-06 46.0 4.7 34 7-40 167-201 (463)
306 PRK07846 mycothione reductase; 93.7 0.1 2.2E-06 46.1 4.7 34 7-40 167-201 (451)
307 PF02254 TrkA_N: TrkA-N domain 93.7 0.13 2.8E-06 36.3 4.4 31 9-39 1-32 (116)
308 TIGR01421 gluta_reduc_1 glutat 93.7 0.11 2.3E-06 45.9 4.7 33 8-40 168-201 (450)
309 PRK12921 2-dehydropantoate 2-r 93.6 0.1 2.2E-06 43.1 4.3 28 9-36 3-31 (305)
310 PRK06522 2-dehydropantoate 2-r 93.6 0.11 2.3E-06 42.9 4.4 28 9-36 3-31 (304)
311 TIGR03385 CoA_CoA_reduc CoA-di 93.4 0.12 2.6E-06 44.9 4.6 34 7-40 138-172 (427)
312 COG4529 Uncharacterized protei 93.4 0.1 2.2E-06 46.5 4.0 33 7-39 2-38 (474)
313 KOG1439|consensus 93.3 0.045 9.7E-07 47.8 1.7 35 6-40 4-39 (440)
314 PRK06370 mercuric reductase; V 93.3 0.13 2.8E-06 45.3 4.7 34 7-40 172-206 (463)
315 PRK05249 soluble pyridine nucl 93.3 0.13 2.9E-06 45.1 4.7 33 8-40 177-210 (461)
316 PRK06416 dihydrolipoamide dehy 93.3 0.13 2.9E-06 45.2 4.7 33 8-40 174-207 (462)
317 COG1252 Ndh NADH dehydrogenase 93.2 0.081 1.7E-06 46.5 3.2 36 6-41 155-204 (405)
318 PRK13512 coenzyme A disulfide 93.2 0.13 2.8E-06 45.1 4.5 33 8-40 150-183 (438)
319 PRK07818 dihydrolipoamide dehy 93.2 0.14 3E-06 45.3 4.7 33 8-40 174-207 (466)
320 PRK06115 dihydrolipoamide dehy 93.1 0.15 3.3E-06 45.2 4.7 34 7-40 175-209 (466)
321 PRK06292 dihydrolipoamide dehy 92.9 0.16 3.5E-06 44.6 4.7 33 8-40 171-204 (460)
322 PRK14989 nitrite reductase sub 92.9 0.18 3.9E-06 48.3 5.3 33 8-40 5-42 (847)
323 TIGR02374 nitri_red_nirB nitri 92.8 0.13 2.9E-06 48.6 4.2 32 9-40 1-36 (785)
324 PF00899 ThiF: ThiF family; I 92.8 0.16 3.6E-06 37.2 3.9 34 7-40 3-38 (135)
325 COG1252 Ndh NADH dehydrogenase 92.7 0.15 3.3E-06 44.7 4.1 34 7-40 4-40 (405)
326 PRK06129 3-hydroxyacyl-CoA deh 92.6 0.17 3.6E-06 42.4 4.1 31 8-38 4-35 (308)
327 PRK09564 coenzyme A disulfide 92.5 0.19 4.2E-06 43.8 4.6 33 7-39 150-183 (444)
328 TIGR01424 gluta_reduc_2 glutat 92.5 0.2 4.3E-06 44.1 4.7 33 8-40 168-201 (446)
329 PRK08293 3-hydroxybutyryl-CoA 92.5 0.19 4.1E-06 41.6 4.3 31 8-38 5-36 (287)
330 TIGR03452 mycothione_red mycot 92.4 0.21 4.5E-06 44.1 4.7 34 7-40 170-204 (452)
331 TIGR03140 AhpF alkyl hydropero 92.3 0.19 4.2E-06 45.1 4.5 33 8-40 354-387 (515)
332 TIGR01292 TRX_reduct thioredox 92.3 0.21 4.5E-06 40.6 4.3 33 8-40 143-176 (300)
333 PRK06327 dihydrolipoamide dehy 92.3 0.22 4.7E-06 44.2 4.7 33 8-40 185-218 (475)
334 PRK06116 glutathione reductase 92.2 0.22 4.8E-06 43.7 4.7 34 7-40 168-202 (450)
335 PF03721 UDPG_MGDP_dh_N: UDP-g 92.1 0.19 4.2E-06 39.2 3.8 31 9-39 3-34 (185)
336 PTZ00318 NADH dehydrogenase-li 92.1 0.22 4.8E-06 43.5 4.5 33 8-40 175-222 (424)
337 PRK09260 3-hydroxybutyryl-CoA 92.1 0.23 4.9E-06 41.1 4.3 30 9-38 4-34 (288)
338 PRK14620 NAD(P)H-dependent gly 92.1 0.22 4.9E-06 41.8 4.3 29 9-37 3-32 (326)
339 COG1249 Lpd Pyruvate/2-oxoglut 92.1 0.31 6.7E-06 43.5 5.3 34 8-41 175-209 (454)
340 cd01483 E1_enzyme_family Super 92.0 0.26 5.7E-06 36.3 4.2 32 9-40 2-35 (143)
341 PRK07845 flavoprotein disulfid 92.0 0.25 5.5E-06 43.7 4.7 33 8-40 179-212 (466)
342 COG1893 ApbA Ketopantoate redu 91.9 0.22 4.9E-06 42.0 4.1 31 9-39 3-34 (307)
343 TIGR03143 AhpF_homolog putativ 91.9 0.22 4.8E-06 45.2 4.3 32 8-39 145-177 (555)
344 PF01593 Amino_oxidase: Flavin 91.9 0.18 3.9E-06 42.2 3.6 25 16-40 1-26 (450)
345 PRK12475 thiamine/molybdopteri 91.7 0.24 5.3E-06 42.4 4.2 33 6-38 24-58 (338)
346 PRK06719 precorrin-2 dehydroge 91.7 0.29 6.3E-06 37.2 4.2 28 7-34 14-42 (157)
347 PRK10262 thioredoxin reductase 91.7 0.27 5.8E-06 41.0 4.4 33 8-40 148-181 (321)
348 PRK15317 alkyl hydroperoxide r 91.7 0.25 5.5E-06 44.3 4.5 33 8-40 353-386 (517)
349 PTZ00153 lipoamide dehydrogena 91.7 0.26 5.7E-06 45.9 4.6 33 8-40 314-347 (659)
350 PLN02507 glutathione reductase 91.6 0.28 6.1E-06 44.0 4.7 33 8-40 205-238 (499)
351 PRK08229 2-dehydropantoate 2-r 91.6 0.27 5.9E-06 41.4 4.3 31 8-38 4-35 (341)
352 PRK08010 pyridine nucleotide-d 91.6 0.3 6.5E-06 42.7 4.7 33 8-40 160-193 (441)
353 PLN02545 3-hydroxybutyryl-CoA 91.5 0.35 7.7E-06 40.1 4.8 30 9-38 7-37 (295)
354 TIGR02374 nitri_red_nirB nitri 91.4 0.26 5.7E-06 46.7 4.4 33 8-40 142-175 (785)
355 PRK13748 putative mercuric red 91.4 0.29 6.2E-06 44.2 4.5 31 8-38 272-303 (561)
356 PRK07819 3-hydroxybutyryl-CoA 91.2 0.32 6.9E-06 40.5 4.3 32 8-39 7-39 (286)
357 PRK07530 3-hydroxybutyryl-CoA 91.2 0.33 7.1E-06 40.2 4.3 30 8-37 6-36 (292)
358 PRK06718 precorrin-2 dehydroge 91.2 0.34 7.3E-06 38.4 4.2 30 7-36 11-41 (202)
359 PRK01438 murD UDP-N-acetylmura 91.1 0.33 7.2E-06 43.0 4.6 31 8-38 18-49 (480)
360 PRK14694 putative mercuric red 91.1 0.34 7.4E-06 42.9 4.6 31 8-38 180-211 (468)
361 cd01487 E1_ThiF_like E1_ThiF_l 91.1 0.37 8.1E-06 37.2 4.3 31 9-39 2-34 (174)
362 KOG1800|consensus 91.1 0.36 7.9E-06 42.2 4.5 36 5-40 19-57 (468)
363 PLN02546 glutathione reductase 91.0 0.33 7.2E-06 44.3 4.6 33 8-40 254-287 (558)
364 PRK07688 thiamine/molybdopteri 91.0 0.33 7.3E-06 41.5 4.3 33 6-38 24-58 (339)
365 PRK14618 NAD(P)H-dependent gly 91.0 0.34 7.3E-06 40.8 4.3 31 8-38 6-37 (328)
366 PRK06035 3-hydroxyacyl-CoA deh 90.9 0.35 7.6E-06 40.1 4.3 31 8-38 5-36 (291)
367 PRK14106 murD UDP-N-acetylmura 90.9 0.32 7E-06 42.6 4.3 32 7-38 6-38 (450)
368 PRK07066 3-hydroxybutyryl-CoA 90.9 0.35 7.5E-06 41.2 4.3 30 9-38 10-40 (321)
369 TIGR02354 thiF_fam2 thiamine b 90.9 0.35 7.6E-06 38.3 4.1 33 6-38 21-55 (200)
370 PRK15116 sulfur acceptor prote 90.8 0.26 5.6E-06 41.0 3.3 34 6-39 30-65 (268)
371 COG2072 TrkA Predicted flavopr 90.8 0.33 7.2E-06 43.0 4.2 33 8-40 177-210 (443)
372 PF13241 NAD_binding_7: Putati 90.7 0.25 5.4E-06 34.7 2.8 31 7-37 8-39 (103)
373 PRK14727 putative mercuric red 90.6 0.38 8.3E-06 42.8 4.5 30 8-37 190-220 (479)
374 PTZ00058 glutathione reductase 90.6 0.38 8.2E-06 44.0 4.5 33 8-40 239-272 (561)
375 PF01488 Shikimate_DH: Shikima 90.5 0.53 1.1E-05 34.6 4.5 32 6-37 12-45 (135)
376 PRK14989 nitrite reductase sub 90.4 0.38 8.3E-06 46.1 4.5 32 8-39 147-179 (847)
377 PRK04148 hypothetical protein; 90.3 0.3 6.4E-06 36.5 3.0 32 7-39 18-50 (134)
378 PRK05808 3-hydroxybutyryl-CoA 90.3 0.42 9.2E-06 39.4 4.3 29 8-36 5-34 (282)
379 TIGR02356 adenyl_thiF thiazole 90.2 0.44 9.6E-06 37.6 4.1 35 5-39 20-56 (202)
380 KOG0404|consensus 90.2 0.34 7.4E-06 39.7 3.4 32 7-38 9-41 (322)
381 PRK12770 putative glutamate sy 90.2 0.47 1E-05 40.3 4.5 32 8-39 174-207 (352)
382 PRK06130 3-hydroxybutyryl-CoA 90.1 0.46 1E-05 39.6 4.4 29 8-36 6-35 (311)
383 PRK08328 hypothetical protein; 90.1 0.46 1E-05 38.3 4.2 33 6-38 27-61 (231)
384 cd00757 ThiF_MoeB_HesA_family 90.0 0.47 1E-05 38.1 4.1 33 6-38 21-55 (228)
385 KOG0399|consensus 89.8 0.4 8.7E-06 47.3 4.1 34 7-40 1786-1820(2142)
386 PRK00094 gpsA NAD(P)H-dependen 89.8 0.51 1.1E-05 39.3 4.4 31 8-38 3-34 (325)
387 TIGR02355 moeB molybdopterin s 89.8 0.53 1.2E-05 38.3 4.3 35 6-40 24-60 (240)
388 TIGR01423 trypano_reduc trypan 89.7 0.45 9.7E-06 42.6 4.2 33 8-40 189-225 (486)
389 COG1748 LYS9 Saccharopine dehy 89.6 0.49 1.1E-05 41.4 4.2 31 8-38 3-35 (389)
390 PRK08644 thiamine biosynthesis 89.5 0.57 1.2E-05 37.4 4.3 33 6-38 28-62 (212)
391 PTZ00052 thioredoxin reductase 89.5 0.51 1.1E-05 42.3 4.4 30 8-37 184-214 (499)
392 PRK05690 molybdopterin biosynt 89.3 0.59 1.3E-05 38.1 4.2 34 6-39 32-67 (245)
393 cd01075 NAD_bind_Leu_Phe_Val_D 89.3 0.61 1.3E-05 36.8 4.2 30 8-37 30-60 (200)
394 cd01486 Apg7 Apg7 is an E1-lik 89.2 0.57 1.2E-05 39.7 4.2 31 9-39 2-34 (307)
395 TIGR01438 TGR thioredoxin and 89.2 0.54 1.2E-05 42.0 4.3 30 8-37 182-212 (484)
396 cd01492 Aos1_SUMO Ubiquitin ac 89.0 0.68 1.5E-05 36.5 4.3 34 6-39 21-56 (197)
397 TIGR01316 gltA glutamate synth 88.9 0.65 1.4E-05 41.0 4.5 32 8-39 274-306 (449)
398 cd01485 E1-1_like Ubiquitin ac 88.9 0.7 1.5E-05 36.4 4.3 34 6-39 19-54 (198)
399 PRK10669 putative cation:proto 88.8 0.68 1.5E-05 42.0 4.8 34 6-39 417-451 (558)
400 TIGR01470 cysG_Nterm siroheme 88.8 0.68 1.5E-05 36.8 4.2 29 8-36 11-40 (205)
401 PRK02705 murD UDP-N-acetylmura 88.7 0.55 1.2E-05 41.3 4.0 31 9-39 3-34 (459)
402 PLN02172 flavin-containing mon 88.7 0.51 1.1E-05 42.0 3.7 32 8-39 206-238 (461)
403 cd01484 E1-2_like Ubiquitin ac 88.6 0.71 1.5E-05 37.5 4.3 31 9-39 2-34 (234)
404 PF06100 Strep_67kDa_ant: Stre 88.6 0.51 1.1E-05 42.4 3.7 32 7-38 3-39 (500)
405 TIGR01381 E1_like_apg7 E1-like 88.5 0.61 1.3E-05 43.3 4.2 34 6-39 338-373 (664)
406 COG3486 IucD Lysine/ornithine 88.4 0.72 1.6E-05 40.6 4.3 38 4-41 3-42 (436)
407 PRK11064 wecC UDP-N-acetyl-D-m 88.1 0.76 1.6E-05 40.3 4.5 31 8-38 5-36 (415)
408 cd05311 NAD_bind_2_malic_enz N 88.0 0.79 1.7E-05 36.9 4.2 32 7-38 26-61 (226)
409 PRK12439 NAD(P)H-dependent gly 87.8 0.95 2.1E-05 38.6 4.7 30 4-33 5-35 (341)
410 PRK14619 NAD(P)H-dependent gly 87.6 0.82 1.8E-05 38.3 4.2 31 8-38 6-37 (308)
411 PRK09496 trkA potassium transp 87.6 0.84 1.8E-05 39.9 4.4 31 8-38 2-33 (453)
412 PRK08762 molybdopterin biosynt 87.5 0.87 1.9E-05 39.4 4.3 33 6-38 135-169 (376)
413 cd01080 NAD_bind_m-THF_DH_Cycl 87.4 1 2.2E-05 34.8 4.2 32 6-37 44-77 (168)
414 TIGR03026 NDP-sugDHase nucleot 87.3 0.8 1.7E-05 40.0 4.1 30 9-38 3-33 (411)
415 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.3 0.85 1.8E-05 41.2 4.3 30 8-37 7-37 (503)
416 PRK09496 trkA potassium transp 87.1 0.93 2E-05 39.6 4.4 33 7-39 232-265 (453)
417 TIGR01915 npdG NADPH-dependent 86.9 1.1 2.3E-05 35.7 4.3 30 9-38 3-34 (219)
418 PRK08223 hypothetical protein; 86.9 0.95 2.1E-05 38.0 4.1 34 6-39 27-62 (287)
419 cd01488 Uba3_RUB Ubiquitin act 86.8 0.96 2.1E-05 38.0 4.1 31 9-39 2-34 (291)
420 PRK12549 shikimate 5-dehydroge 86.7 0.98 2.1E-05 37.6 4.1 31 7-37 128-160 (284)
421 PTZ00082 L-lactate dehydrogena 86.7 1.3 2.8E-05 37.6 4.9 38 2-39 2-41 (321)
422 cd01489 Uba2_SUMO Ubiquitin ac 86.5 0.92 2E-05 38.5 3.9 31 9-39 2-34 (312)
423 PRK00066 ldh L-lactate dehydro 86.4 1.4 2.9E-05 37.4 4.9 32 6-37 6-40 (315)
424 TIGR00518 alaDH alanine dehydr 86.4 1.1 2.3E-05 38.8 4.3 31 7-37 168-199 (370)
425 KOG2495|consensus 86.4 0.38 8.3E-06 42.6 1.5 34 7-40 219-267 (491)
426 KOG2018|consensus 86.3 0.85 1.8E-05 39.0 3.5 32 7-38 75-108 (430)
427 cd05291 HicDH_like L-2-hydroxy 86.3 1.1 2.4E-05 37.5 4.3 30 9-38 3-35 (306)
428 TIGR01763 MalateDH_bact malate 86.3 1.1 2.4E-05 37.7 4.3 29 8-36 3-33 (305)
429 cd00755 YgdL_like Family of ac 86.3 1.1 2.3E-05 36.4 4.1 34 6-39 11-46 (231)
430 TIGR02437 FadB fatty oxidation 86.2 0.97 2.1E-05 42.5 4.2 30 8-37 315-345 (714)
431 cd05292 LDH_2 A subgroup of L- 86.1 1.2 2.6E-05 37.5 4.4 31 8-38 2-35 (308)
432 PRK12831 putative oxidoreducta 86.1 1.1 2.5E-05 39.7 4.4 32 8-39 283-315 (464)
433 PRK11730 fadB multifunctional 86.0 0.99 2.1E-05 42.5 4.2 31 8-38 315-346 (715)
434 cd05191 NAD_bind_amino_acid_DH 85.9 1.6 3.5E-05 29.4 4.2 30 7-36 24-55 (86)
435 PRK08268 3-hydroxy-acyl-CoA de 85.9 1.3 2.9E-05 39.9 4.8 30 8-37 9-39 (507)
436 PF00056 Ldh_1_N: lactate/mala 85.7 1.6 3.5E-05 32.4 4.5 32 8-39 2-37 (141)
437 PRK05597 molybdopterin biosynt 85.7 1.2 2.6E-05 38.3 4.3 33 6-38 28-62 (355)
438 PRK05600 thiamine biosynthesis 85.7 1.2 2.6E-05 38.7 4.2 33 6-38 41-75 (370)
439 PRK07502 cyclohexadienyl dehyd 85.6 1.4 3E-05 36.8 4.5 37 1-37 1-40 (307)
440 PRK11749 dihydropyrimidine deh 85.2 1.3 2.9E-05 38.9 4.5 33 7-39 274-308 (457)
441 PRK07531 bifunctional 3-hydrox 85.2 1.2 2.7E-05 39.9 4.3 30 9-38 7-37 (495)
442 PRK07878 molybdopterin biosynt 84.9 1.3 2.7E-05 38.7 4.1 33 6-38 42-76 (392)
443 TIGR02853 spore_dpaA dipicolin 84.9 1.4 3E-05 36.8 4.2 32 7-38 152-184 (287)
444 PRK02472 murD UDP-N-acetylmura 84.8 1.3 2.8E-05 38.7 4.2 31 8-38 7-38 (447)
445 PF00743 FMO-like: Flavin-bind 84.7 1.2 2.6E-05 40.5 3.9 31 8-38 185-216 (531)
446 PRK12548 shikimate 5-dehydroge 84.6 1.6 3.4E-05 36.4 4.3 30 8-37 128-159 (289)
447 PLN02353 probable UDP-glucose 84.4 1.4 3.1E-05 39.4 4.3 31 8-38 3-36 (473)
448 PRK07417 arogenate dehydrogena 84.2 1.4 3.1E-05 36.3 3.9 29 9-37 3-32 (279)
449 PRK07411 hypothetical protein; 84.1 1.4 3.1E-05 38.4 4.1 33 6-38 38-72 (390)
450 cd00401 AdoHcyase S-adenosyl-L 83.8 1.7 3.6E-05 38.4 4.4 33 7-39 203-236 (413)
451 TIGR02441 fa_ox_alpha_mit fatt 83.6 1.4 3.1E-05 41.6 4.1 31 8-38 337-368 (737)
452 PRK08017 oxidoreductase; Provi 83.6 1.9 4.1E-05 34.1 4.3 29 9-37 5-35 (256)
453 cd01491 Ube1_repeat1 Ubiquitin 83.5 1 2.2E-05 37.8 2.8 35 5-39 18-54 (286)
454 PRK06223 malate dehydrogenase; 83.5 1.9 4E-05 36.0 4.4 29 8-36 4-34 (307)
455 KOG2403|consensus 83.4 1.1 2.4E-05 41.0 3.1 32 5-36 54-86 (642)
456 PRK07454 short chain dehydroge 83.3 2.4 5.2E-05 33.3 4.8 37 1-37 1-39 (241)
457 PRK03562 glutathione-regulated 83.3 1.6 3.5E-05 40.4 4.2 34 6-39 400-434 (621)
458 PF13460 NAD_binding_10: NADH( 83.2 2.2 4.7E-05 32.1 4.3 31 9-39 1-33 (183)
459 TIGR01809 Shik-DH-AROM shikima 83.1 1.9 4.1E-05 35.8 4.2 31 7-37 126-158 (282)
460 PRK07326 short chain dehydroge 82.8 2 4.4E-05 33.5 4.1 30 8-37 8-39 (237)
461 PRK07060 short chain dehydroge 82.7 2.7 5.8E-05 33.0 4.8 31 8-38 11-43 (245)
462 PLN02520 bifunctional 3-dehydr 82.6 1.8 3.8E-05 39.4 4.2 29 8-36 381-410 (529)
463 PF03446 NAD_binding_2: NAD bi 82.3 2.4 5.2E-05 32.0 4.3 30 8-37 3-33 (163)
464 COG1250 FadB 3-hydroxyacyl-CoA 82.3 1.8 3.9E-05 36.7 3.8 30 9-38 6-36 (307)
465 TIGR00507 aroE shikimate 5-deh 82.3 2.1 4.7E-05 35.1 4.2 30 8-37 119-149 (270)
466 cd05290 LDH_3 A subgroup of L- 82.2 2.2 4.7E-05 36.1 4.3 29 9-37 2-33 (307)
467 COG0281 SfcA Malic enzyme [Ene 82.2 2.2 4.8E-05 37.6 4.4 35 5-39 198-236 (432)
468 PF01262 AlaDh_PNT_C: Alanine 81.7 2.8 6.1E-05 31.8 4.5 32 7-38 21-53 (168)
469 COG0446 HcaD Uncharacterized N 81.6 2.3 5.1E-05 35.8 4.4 32 9-40 1-35 (415)
470 PRK12778 putative bifunctional 81.5 2.2 4.8E-05 40.2 4.5 32 8-39 572-605 (752)
471 TIGR01505 tartro_sem_red 2-hyd 81.5 1.9 4.1E-05 35.6 3.7 30 9-38 2-32 (291)
472 cd01078 NAD_bind_H4MPT_DH NADP 81.4 2.5 5.5E-05 32.7 4.2 31 7-37 29-61 (194)
473 PRK11154 fadJ multifunctional 81.4 2 4.2E-05 40.4 4.1 31 8-38 311-343 (708)
474 PRK06153 hypothetical protein; 81.4 1.9 4.1E-05 37.8 3.7 35 6-40 176-212 (393)
475 COG2085 Predicted dinucleotide 81.3 2.1 4.6E-05 34.3 3.7 26 9-34 4-30 (211)
476 cd01339 LDH-like_MDH L-lactate 81.3 2.1 4.5E-05 35.7 3.9 31 9-39 1-33 (300)
477 PRK14027 quinate/shikimate deh 81.1 2.4 5.2E-05 35.4 4.2 30 8-37 129-160 (283)
478 KOG2852|consensus 81.1 0.84 1.8E-05 38.8 1.4 34 4-37 8-48 (380)
479 PLN02602 lactate dehydrogenase 80.8 3 6.4E-05 36.0 4.7 32 7-38 38-72 (350)
480 PF01118 Semialdhyde_dh: Semia 80.8 3.2 6.9E-05 29.7 4.2 28 9-36 2-32 (121)
481 PRK05562 precorrin-2 dehydroge 80.7 2.4 5.3E-05 34.3 3.9 27 8-34 27-54 (223)
482 cd05293 LDH_1 A subgroup of L- 80.7 2.6 5.6E-05 35.7 4.3 32 7-38 4-38 (312)
483 COG3634 AhpF Alkyl hydroperoxi 80.6 1.6 3.4E-05 38.1 2.9 34 7-40 355-389 (520)
484 COG0451 WcaG Nucleoside-diphos 80.5 3 6.5E-05 33.9 4.5 32 9-40 3-36 (314)
485 PRK08177 short chain dehydroge 80.3 3.3 7E-05 32.4 4.5 31 9-39 4-36 (225)
486 COG1004 Ugd Predicted UDP-gluc 80.1 2.5 5.4E-05 37.1 4.0 31 9-39 3-34 (414)
487 TIGR02440 FadJ fatty oxidation 80.1 2.5 5.3E-05 39.7 4.3 31 8-38 306-338 (699)
488 PRK06057 short chain dehydroge 80.0 3 6.5E-05 33.2 4.3 31 8-38 9-41 (255)
489 PRK03659 glutathione-regulated 79.9 2.6 5.6E-05 38.8 4.3 34 6-39 400-434 (601)
490 cd00300 LDH_like L-lactate deh 79.7 2.5 5.3E-05 35.4 3.8 30 9-38 1-33 (300)
491 PRK08306 dipicolinate synthase 79.7 3 6.6E-05 34.9 4.4 33 6-38 152-185 (296)
492 PRK06841 short chain dehydroge 79.5 3.2 7E-05 32.8 4.3 30 9-38 18-49 (255)
493 PRK12550 shikimate 5-dehydroge 79.3 3.2 6.9E-05 34.5 4.3 31 8-38 124-156 (272)
494 PF03807 F420_oxidored: NADP o 79.3 4.6 0.0001 27.2 4.5 30 9-38 2-36 (96)
495 PRK12749 quinate/shikimate deh 79.2 3.3 7E-05 34.6 4.4 30 8-37 126-157 (288)
496 PRK00258 aroE shikimate 5-dehy 79.2 3.1 6.8E-05 34.3 4.2 32 7-38 124-157 (278)
497 PRK12814 putative NADPH-depend 79.1 3 6.4E-05 38.8 4.5 32 8-39 325-358 (652)
498 TIGR00936 ahcY adenosylhomocys 79.1 3 6.5E-05 36.8 4.2 33 7-39 196-229 (406)
499 PRK08217 fabG 3-ketoacyl-(acyl 78.9 3.5 7.6E-05 32.3 4.3 31 8-38 7-39 (253)
500 PRK07774 short chain dehydroge 78.7 4.4 9.6E-05 31.9 4.9 31 8-38 8-40 (250)
No 1
>KOG1238|consensus
Probab=100.00 E-value=3.8e-40 Score=292.79 Aligned_cols=165 Identities=31% Similarity=0.449 Sum_probs=150.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCCCCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeeec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFW 81 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 81 (177)
...|||||||||+|||++|+||||++ +|||||||+..+...++|.....+..+.++|.|.+.|+..+|..+.++.+.|
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~w 134 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCYW 134 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCceec
Confidence 45799999999999999999999998 9999999999876667775555666789999999999999999999999999
Q ss_pred ccceeecCCcccccccccCCChhHHhhhC----CCCCCchHHHHHHHHhcCCCC--CCCCCCccccceeecCCCCCCchh
Q psy2463 82 PRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNVSKVLGHIIGYDRK--TNVGNNVEDFPVRVSLSDTATPGL 155 (177)
Q Consensus 82 ~~g~~lGGsS~in~~~~~R~~~~dfd~w~----~~W~~~~l~pyf~~~E~~~~~--~~~~~~g~~Gpv~v~~~~~~~p~~ 155 (177)
+|||+|||||++|+|+|.|+++.|||+|+ +||+|++++|||+|+|...-+ ....+|+..||+.+....+.+++.
T Consensus 135 pRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~ 214 (623)
T KOG1238|consen 135 PRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLF 214 (623)
T ss_pred CccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchh
Confidence 99999999999999999999999999998 789999999999999987443 334589999999999999999999
Q ss_pred HHHHHHHHHcCCc
Q psy2463 156 TSTIPAIVKSKHY 168 (177)
Q Consensus 156 ~~~~~a~~~~G~~ 168 (177)
..|.++-+|+|..
T Consensus 215 ~~~~~ag~e~G~~ 227 (623)
T KOG1238|consen 215 TAFHRAGTEIGGS 227 (623)
T ss_pred hHhHHhHHhcCCC
Confidence 9999999999943
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.3e-35 Score=264.74 Aligned_cols=163 Identities=29% Similarity=0.383 Sum_probs=138.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCC---CCCCCCCCccc-ccCCCCCCccccCCCCCcCCCCCCCeeec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS---FWSNIPLTSPI-LQRSEHDWQYETAPQANSSGGLKNNVSFW 81 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 81 (177)
||||||||+|||++|+||||++ +|||||+|+... .....|..... +....++|.|.+.||+. ..++.+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 8999999999999999999987 999999998532 22334432211 22345789999999986 56788999
Q ss_pred ccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCchhH
Q psy2463 82 PRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLT 156 (177)
Q Consensus 82 ~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~~~ 156 (177)
++||+|||||+||+|+|+|+++.|||.|+ ++|+|++|+|||+|+|++.... ..+|+++||+++..+....+..+
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~-~~~~g~~G~~~v~~~~~~~~~~~ 155 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE-KPYRGHDGPIKVRRGPADNPLFQ 155 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC-cccCCCCCCEEEecCCCCCHHHH
Confidence 99999999999999999999999999996 5899999999999999987643 35789999999999888889999
Q ss_pred HHHHHHHHcCCcCCCccCC
Q psy2463 157 STIPAIVKSKHYLPKLYHD 175 (177)
Q Consensus 157 ~~~~a~~~~G~~~~~~~~~ 175 (177)
.|.++++++|++..++...
T Consensus 156 ~~~~a~~~~G~~~~~~~~~ 174 (532)
T TIGR01810 156 AFIEAGVEAGYNKTPDVNG 174 (532)
T ss_pred HHHHHHHHcCCCccCCCCC
Confidence 9999999999988776543
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.8e-35 Score=265.31 Aligned_cols=165 Identities=32% Similarity=0.454 Sum_probs=138.0
Q ss_pred ccccEEEECCChHHHHHHHHHHh-CC-cEEEEecCCCC---CCCCCCCCCccc-ccCCCCCCccccCCCCCcCCCCCCCe
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEAGDFP---SFWSNIPLTSPI-LQRSEHDWQYETAPQANSSGGLKNNV 78 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~ 78 (177)
.+|||||||||+||+++|.|||| .+ +|||||+|+.. .....+|..... .....++|.|.+.||+. ..++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~ 79 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR 79 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence 45999999999999999999999 57 99999999754 123334432211 12346789999999886 56778
Q ss_pred eecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCC-CCCC
Q psy2463 79 SFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLS-DTAT 152 (177)
Q Consensus 79 ~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~-~~~~ 152 (177)
+.+++||+|||||+||+|+|.|+.+.|||.|+ ++|+|++|+|||+|+|++... ....|+..||++++.+ ....
T Consensus 80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~-~~~~~g~~gp~~~~~~~~~~~ 158 (560)
T PRK02106 80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG-EDDYRGGDGPLSVTRGKPGTN 158 (560)
T ss_pred eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC-CccccCCCCCEEEeCCCCCCC
Confidence 99999999999999999999999999999996 689999999999999998743 2346889999999987 6778
Q ss_pred chhHHHHHHHHHcCCcCCCccC
Q psy2463 153 PGLTSTIPAIVKSKHYLPKLYH 174 (177)
Q Consensus 153 p~~~~~~~a~~~~G~~~~~~~~ 174 (177)
+..+.|+++++++|++..+++.
T Consensus 159 ~~~~~~~~a~~~lG~~~~~~~~ 180 (560)
T PRK02106 159 PLFQAFVEAGVQAGYPRTDDLN 180 (560)
T ss_pred HHHHHHHHHHHHcCCCcCCCCC
Confidence 9999999999999999877664
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=9.1e-36 Score=246.42 Aligned_cols=163 Identities=28% Similarity=0.357 Sum_probs=129.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCCCCCCCCC-CcccccCCCCCCccccCCCCCcCCCCCCCeeeccc
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPL-TSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPR 83 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~~~~~~p~-~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~ 83 (177)
|||||||||+||+++|.|||+++ +|||||+|+........+. .........++|.+.+.|+.. .+++.+.+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 89999999999999999999997 8999999998653221111 111222456788888888875 6788888999
Q ss_pred ceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceee-cCCCCCCchhHH
Q psy2463 84 GKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRV-SLSDTATPGLTS 157 (177)
Q Consensus 84 g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v-~~~~~~~p~~~~ 157 (177)
|++|||||+||+|+++|+++.||+.|. ++|+|++|+|||+++|++..+. ...|+..+|+++ ..+....|..+.
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~-~~~~g~~~~~~v~~~~~~~~~~~~~ 155 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS-SDLHGVDGPLPVSSSPPYPSPMNQA 155 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB-GGGSCBSSSEEEHHHCSCHCTHHHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc-ccccccccccccccccCCCCHHHHH
Confidence 999999999999999999999999998 4699999999999999988874 567889999999 667788899999
Q ss_pred HHHHHHHcCCcCCCccC
Q psy2463 158 TIPAIVKSKHYLPKLYH 174 (177)
Q Consensus 158 ~~~a~~~~G~~~~~~~~ 174 (177)
|.+|++++|++++.+..
T Consensus 156 ~~~a~~~~G~~~~~~~~ 172 (296)
T PF00732_consen 156 LMDAAEELGIPVPQDFN 172 (296)
T ss_dssp HHHHHHHTTHHBCSCTT
T ss_pred HHHHHHHcCCccccccc
Confidence 99999999999877654
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-35 Score=260.04 Aligned_cols=169 Identities=31% Similarity=0.400 Sum_probs=145.3
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCC-CCCCCCCcccccCC-CCCCccccCCCCCcCCCCCCCee
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSF-WSNIPLTSPILQRS-EHDWQYETAPQANSSGGLKNNVS 79 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~~ 79 (177)
...+|||||||+|.|||++|+|||+.+ +|||||+|+.... ..++|..+..+... .++|.|.++++++ ..++.+
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~~ 79 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGREL 79 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCccc
Confidence 466799999999999999999999777 9999999986542 45566555444433 7889999999985 788999
Q ss_pred ecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCC---CCCCccccceeecCCCCC
Q psy2463 80 FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTN---VGNNVEDFPVRVSLSDTA 151 (177)
Q Consensus 80 ~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~---~~~~g~~Gpv~v~~~~~~ 151 (177)
.++|+|+|||||+||+|+|+|+++.||+.|. ++|.|++|+|||+++|++..... ...|+..||+.+..+...
T Consensus 80 ~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~ 159 (542)
T COG2303 80 AWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSP 159 (542)
T ss_pred cccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCc
Confidence 9999999999999999999999999999996 67999999999999998665421 237899999999988777
Q ss_pred CchhHHHHHHHHHcCCcCCCccCC
Q psy2463 152 TPGLTSTIPAIVKSKHYLPKLYHD 175 (177)
Q Consensus 152 ~p~~~~~~~a~~~~G~~~~~~~~~ 175 (177)
.|+...|+++++++|++.+.++-.
T Consensus 160 ~~~~~a~~~a~~~~G~~~~~~~~~ 183 (542)
T COG2303 160 NPIARAFIEAGEQLGFPTTPDPNG 183 (542)
T ss_pred hHHHHHHHHHHHHcCCCcCccccc
Confidence 999999999999999999888753
No 6
>PLN02785 Protein HOTHEAD
Probab=99.95 E-value=4.3e-28 Score=218.75 Aligned_cols=141 Identities=22% Similarity=0.166 Sum_probs=113.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCCC--CCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeeec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPS--FWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFW 81 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 81 (177)
...|||||||+|+|||++|.||+++.+|||||+|+... +....+. .+....++|.|.+.||.. .+++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~---~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLE---NFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHH---hhCCcccccCCccccccc----cCCCceec
Confidence 34699999999999999999999933999999998532 2222221 122345689999999875 46778999
Q ss_pred ccceeecCCcccccccccCCChhHHhhhCCCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCchhHHHHHH
Q psy2463 82 PRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPA 161 (177)
Q Consensus 82 ~~g~~lGGsS~in~~~~~R~~~~dfd~w~~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~~~~~~~a 161 (177)
+|||+|||||+||+|+|.|+++.||+. .+|+|+++.|||+++|+... ..+. ..|....|++|
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~--~GW~~~~~~~~~~~~e~~~~---------------~~~~-~~~~~~~~~~a 187 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK--AGWDAKLVNESYPWVERQIV---------------HWPK-VAPWQAALRDS 187 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc--CCCCcccccchHHHHhcccc---------------cCCC-cChHHHHHHHH
Confidence 999999999999999999999999987 78999999999999997531 1112 35789999999
Q ss_pred HHHcCCcC
Q psy2463 162 IVKSKHYL 169 (177)
Q Consensus 162 ~~~~G~~~ 169 (177)
++++|++.
T Consensus 188 ~~e~G~~~ 195 (587)
T PLN02785 188 LLEVGVSP 195 (587)
T ss_pred HHHcCCCc
Confidence 99999963
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.61 E-value=1.4e-15 Score=136.26 Aligned_cols=121 Identities=16% Similarity=0.024 Sum_probs=78.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCC-------CCC----CCC-cc-----cccC-------------
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFW-------SNI----PLT-SP-----ILQR------------- 55 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~-------~~~----p~~-~~-----~~~~------------- 55 (177)
||+||||+|++|+++|..|++++ +|||||+|...... ..+ +.. +. .+..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 79999999999999999999999 99999999754310 000 000 00 0000
Q ss_pred CCCCCccccCCCCCcC------CCCCCCee-ecccceeecCCcccccccccCCChhHHhhhC-CCC--CCchHHHHHHHH
Q psy2463 56 SEHDWQYETAPQANSS------GGLKNNVS-FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWF--DYGNVSKVLGHI 125 (177)
Q Consensus 56 ~~~~w~~~~~p~~~~~------~~~~~~~~-~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-~~W--~~~~l~pyf~~~ 125 (177)
....|+-. |..... .+.....+ ...|-|+|||+|.||++.+.|.++++- .|- .+| +|+||+|||.++
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~~~dWPI~y~eL~PyY~~A 157 (544)
T TIGR02462 81 DPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PKLSDDAAEDDAEWDRLYTKA 157 (544)
T ss_pred CccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cCCCCCCCCCHHHHHHHHHHH
Confidence 00012100 000000 00011112 245789999999999999999999763 333 789 999999999999
Q ss_pred hcCCC
Q psy2463 126 IGYDR 130 (177)
Q Consensus 126 E~~~~ 130 (177)
|.+.+
T Consensus 158 e~~~g 162 (544)
T TIGR02462 158 ESLIG 162 (544)
T ss_pred HHHhC
Confidence 99755
No 8
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.66 E-value=2.4e-08 Score=86.39 Aligned_cols=36 Identities=42% Similarity=0.475 Sum_probs=33.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..||+||||+|+||+++|.+|++.| +|||||++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3699999999999999999999999 99999998764
No 9
>PRK10015 oxidoreductase; Provisional
Probab=98.57 E-value=7.3e-08 Score=84.45 Aligned_cols=36 Identities=39% Similarity=0.401 Sum_probs=33.4
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.+||+||||+|+||+++|..||+.| +|+|||++..
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 35699999999999999999999999 9999999865
No 10
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.55 E-value=8.7e-08 Score=83.88 Aligned_cols=35 Identities=43% Similarity=0.429 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..||+||||+|+||+++|..|++.| +|+|||++..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 4699999999999999999999999 9999999864
No 11
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.45 E-value=1.7e-07 Score=75.21 Aligned_cols=35 Identities=34% Similarity=0.208 Sum_probs=29.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|++|||+|++|+++|..||+++ +|+|+|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 4699999999999999999999999 9999998654
No 12
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.43 E-value=2.6e-07 Score=82.47 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=36.0
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|++..+||+||||||..|+.+|..||+.| +|+|||++.
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 77888899999999999999999999999 999999994
No 13
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.43 E-value=2.1e-07 Score=76.44 Aligned_cols=38 Identities=29% Similarity=0.141 Sum_probs=34.4
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+..+||+||||+|++|+++|.+|++.+ +|+|||+....
T Consensus 18 ~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 18 DYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 345799999999999999999999999 99999998653
No 14
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.40 E-value=3.5e-07 Score=74.52 Aligned_cols=33 Identities=42% Similarity=0.497 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
||+||||+|++|+++|.+|++.| +|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 79999999999999999999999 9999999965
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=98.40 E-value=3.5e-07 Score=80.81 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=36.2
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|.+.+.||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 78899999999999999999999999999 999999874
No 16
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.40 E-value=2.8e-07 Score=79.35 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
|||||||+|+||+++|..|++.| +|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999 99999997
No 17
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.40 E-value=3.6e-07 Score=78.47 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=35.9
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|.....+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 66778899999999999999999999999 9999999753
No 18
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.37 E-value=3.8e-07 Score=79.75 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=27.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
||+||||+|+||+.+|.+|++.| +|+|||++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 89999999999999999999999 99999999875
No 19
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.37 E-value=4.3e-07 Score=80.25 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=32.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.-.||+||||+|+||+++|..||+.| +|+|||+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 34699999999999999999999999 9999998753
No 20
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.36 E-value=4.7e-07 Score=75.18 Aligned_cols=36 Identities=36% Similarity=0.290 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
+|||||||+|++|+++|..|++.| +|+|+|+-+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 489999999999999999999999 999999987653
No 21
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.34 E-value=5.5e-07 Score=79.30 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
++|+||||+|.+|+.+|.++++.| +|+|||+++
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 389999999999999999999999 999999875
No 22
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.34 E-value=4.4e-07 Score=72.98 Aligned_cols=33 Identities=33% Similarity=0.272 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.+.|+||||+|++|+++|.+||+++ +|+++|+-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ 62 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK 62 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEee
Confidence 3589999999999999999999999 99999994
No 23
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.34 E-value=6e-07 Score=80.33 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=34.8
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|.+...||+||||||..|+.+|..||+.| +|+|||++.
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 55567799999999999999999999999 999999974
No 24
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.33 E-value=5.4e-07 Score=74.06 Aligned_cols=36 Identities=28% Similarity=0.146 Sum_probs=32.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|+||+++|.+|++.| +|+|||+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 34699999999999999999999999 9999998654
No 25
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.30 E-value=5.9e-07 Score=80.01 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+|+||||||.+|+++|.+||++| +|+|||+-..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 589999999999999999999999 9999997543
No 26
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.30 E-value=7.5e-07 Score=77.02 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
|+||||+|.||+++|.++++.| +|+|||+++..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence 8999999999999999999999 99999999874
No 27
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29 E-value=8.8e-07 Score=76.40 Aligned_cols=37 Identities=32% Similarity=0.287 Sum_probs=33.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..++|+||||+|++|+++|..|++.| +|+|||+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34699999999999999999999999 99999998753
No 28
>PRK06185 hypothetical protein; Provisional
Probab=98.29 E-value=9.6e-07 Score=76.06 Aligned_cols=39 Identities=28% Similarity=0.223 Sum_probs=35.6
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|....++|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 56667899999999999999999999999 9999999753
No 29
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.28 E-value=1.1e-06 Score=57.97 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=27.9
Q ss_pred EECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 11 IVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 11 VVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
|||+|.+|+.+|.+|++.+ +|+|+|+....-
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 8999999999999999999 999999987653
No 30
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.27 E-value=9.6e-07 Score=73.38 Aligned_cols=31 Identities=42% Similarity=0.510 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|+||||+|.+|+.+|.+|++.| +|+|||++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 8999999999999999999999 999999993
No 31
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.26 E-value=1.1e-06 Score=75.02 Aligned_cols=36 Identities=28% Similarity=0.263 Sum_probs=33.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+|+||||+|++|+++|..|++.| +|+|||++...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4689999999999999999999999 99999998753
No 32
>PRK06116 glutathione reductase; Validated
Probab=98.26 E-value=1.1e-06 Score=77.13 Aligned_cols=33 Identities=33% Similarity=0.335 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
..||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999 99999986
No 33
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.25 E-value=1.1e-06 Score=74.70 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.||+||||+|..|+.+|..|++.| +|+|||++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 589999999999999999999999 9999999863
No 34
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.24 E-value=1e-06 Score=76.42 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+|+||||+|+||+++|..||+.| +|+|||+-.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 58999999999999999999999 999999864
No 35
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.24 E-value=1.1e-06 Score=75.26 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=32.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...||+||||+|++|+.+|..|++.| +|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35699999999999999999999999 999999975
No 36
>PRK09126 hypothetical protein; Provisional
Probab=98.23 E-value=1.3e-06 Score=74.86 Aligned_cols=34 Identities=38% Similarity=0.366 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
++|+||||+|++|+++|..|++.| +|+|||+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 489999999999999999999999 9999999875
No 37
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.23 E-value=1.2e-06 Score=77.20 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
++||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 3599999999999999999999999 99999985
No 38
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.22 E-value=1.3e-06 Score=77.22 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=33.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.+||+||||+|.+||++|.-||.+| +||+||+-...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~y 39 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYY 39 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCc
Confidence 3599999999999999999999999 99999997654
No 39
>PRK07121 hypothetical protein; Validated
Probab=98.21 E-value=1.5e-06 Score=77.22 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|+||||+|.||+.+|.++++.| +|+|||+...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4799999999999999999999999 9999999865
No 40
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.21 E-value=1.5e-06 Score=76.41 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
++||+||||+|+||..+|.++++.| +|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 1 FDYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 3699999999999999999999999 99999984
No 41
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=1.5e-06 Score=76.06 Aligned_cols=33 Identities=36% Similarity=0.378 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.||+||||||+||..+|.+|++.+ +|+|+|+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 599999999999999999999999 999999875
No 42
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.20 E-value=1.4e-06 Score=76.31 Aligned_cols=33 Identities=39% Similarity=0.452 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
|+||||||+||+.+|..+|+.| +|||||+++..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence 8999999999999999999999 99999998764
No 43
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=1.8e-06 Score=76.40 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=31.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+..||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 34699999999999999999999999 99999986
No 44
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.19 E-value=1.7e-06 Score=74.02 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+|+||||+|++|+++|..|++.| +|+|||+-..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 3589999999999999999999999 9999999754
No 45
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.19 E-value=1.7e-06 Score=74.76 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+|+||||+|..|+.+|.+|++.| +|+|||++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 69999999999999999999999 9999999863
No 46
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.19 E-value=1.7e-06 Score=73.53 Aligned_cols=33 Identities=39% Similarity=0.519 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
||+||||+|.+|+.+|..|++.| +|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 69999999999999999999999 9999999753
No 47
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.19 E-value=1.9e-06 Score=76.64 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
||+||||+|.+|+++|..||++| +|+|||+....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 69999999999999999999999 99999997553
No 48
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.19 E-value=1.7e-06 Score=74.02 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|+||||+|+||+.+|.+|++.| +|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 8999999999999999999999 9999998764
No 49
>PLN02463 lycopene beta cyclase
Probab=98.19 E-value=1.8e-06 Score=76.33 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=32.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...||+||||+|+||+.+|.+|++.| +|+|||..+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 34689999999999999999999999 9999998653
No 50
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=1.7e-06 Score=73.00 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.+|+||||||.+|+|+|..||+.| +|||||+-...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 379999999999999999999999 99999997654
No 51
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.18 E-value=2.2e-06 Score=77.45 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=32.9
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
....||+||||||..|+.+|..||+.| +|+|||++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 345699999999999999999999999 999999964
No 52
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.18 E-value=1.7e-06 Score=74.50 Aligned_cols=33 Identities=48% Similarity=0.557 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHH--HhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRL--SLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rL--a~~g-~VLvLEaG~~~ 40 (177)
|+||||+|+||+.+|.+| ++.+ +|||||.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 6667 99999998654
No 53
>PTZ00058 glutathione reductase; Provisional
Probab=98.18 E-value=2e-06 Score=78.01 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.+..||+||||+|+||..+|.++++.| +|+|||++
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 346799999999999999999999999 99999985
No 54
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.18 E-value=1.9e-06 Score=74.47 Aligned_cols=36 Identities=31% Similarity=0.235 Sum_probs=33.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+|+||||+|+||..+|..+++.| +|+|||+++..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~ 38 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL 38 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccc
Confidence 3689999999999999999999999 99999999864
No 55
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.17 E-value=2.2e-06 Score=75.60 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=32.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
+.++|+||||+|..|+.+|.+|++. | +|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4568999999999999999999997 7 9999999753
No 56
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.17 E-value=2.1e-06 Score=72.87 Aligned_cols=33 Identities=30% Similarity=0.208 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
||+||||+|.+|+.+|.+|++.| +|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 69999999999999999999999 9999999753
No 57
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.17 E-value=2.1e-06 Score=74.31 Aligned_cols=33 Identities=42% Similarity=0.470 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+|++|||+|++|+++|.+|++.| +|+|||+...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 79999999999999999999999 9999998643
No 58
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.17 E-value=2.2e-06 Score=76.66 Aligned_cols=35 Identities=26% Similarity=0.097 Sum_probs=32.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|+||||+|.||+.+|.++++.| +|+|||+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3689999999999999999999999 9999999765
No 59
>PRK06370 mercuric reductase; Validated
Probab=98.16 E-value=2.5e-06 Score=75.18 Aligned_cols=33 Identities=39% Similarity=0.344 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 499999999999999999999999 999999863
No 60
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.16 E-value=2.2e-06 Score=74.92 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+||+||||||+||..+|.+|++.| +|+|+|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 599999999999999999999999 999999875
No 61
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.15 E-value=2.5e-06 Score=77.41 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|....++|+||||+|.+|+.+|.++++.| +|+|||+...
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 55667899999999999999999999999 9999999864
No 62
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.15 E-value=2.4e-06 Score=75.22 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
..||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4699999999999999999999999 999999864
No 63
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.15 E-value=2.5e-06 Score=77.88 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=31.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
..|||||||||+||+.+|..+|+.| +|+|||...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 4599999999999999999999999 999999875
No 64
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.14 E-value=2.4e-06 Score=72.58 Aligned_cols=32 Identities=38% Similarity=0.344 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|+||||+|+||+++|..|++.| +|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 8999999999999999999999 9999999975
No 65
>PRK07045 putative monooxygenase; Reviewed
Probab=98.14 E-value=2.9e-06 Score=72.79 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=33.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
...+|++|||+|++|+++|.-|++.| +|+|+|+.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 35689999999999999999999999 99999998754
No 66
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=2.8e-06 Score=75.23 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=32.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
++.||+||||+|+||..+|.+|++.| +|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45699999999999999999999999 999999853
No 67
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.14 E-value=2.3e-06 Score=73.76 Aligned_cols=33 Identities=39% Similarity=0.431 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
++|++|||+|++|+++|..|++.| +|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 489999999999999999999999 999999876
No 68
>PRK08013 oxidoreductase; Provisional
Probab=98.13 E-value=2.7e-06 Score=73.51 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 489999999999999999999999 9999999865
No 69
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.12 E-value=3.1e-06 Score=74.39 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=31.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
..||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 4599999999999999999999999 999999864
No 70
>PLN02985 squalene monooxygenase
Probab=98.12 E-value=2.9e-06 Score=76.21 Aligned_cols=36 Identities=33% Similarity=0.279 Sum_probs=32.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+..+|+||||+|++|+++|..|++.| +|+|||+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 45699999999999999999999999 9999999753
No 71
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.12 E-value=3.3e-06 Score=69.07 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
||+||||+|+||+.+|..|++.+ +|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 79999999999999999999999 999999875
No 72
>KOG1298|consensus
Probab=98.11 E-value=2.9e-06 Score=73.24 Aligned_cols=37 Identities=35% Similarity=0.264 Sum_probs=33.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
..+|+||||+|.+|+.+|..|+++| +|+|||+--..+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP 81 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP 81 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc
Confidence 4689999999999999999999999 999999975443
No 73
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.11 E-value=3.2e-06 Score=75.63 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=33.9
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhC--C-cEEEEec
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEA 36 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEa 36 (177)
|+++..+|+||||||.+|+++|..|++. + +|+|||+
T Consensus 1 ~~~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 1 MAKSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CCCCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 6778889999999999999999999997 5 9999999
No 74
>PLN02697 lycopene epsilon cyclase
Probab=98.11 E-value=2.9e-06 Score=76.43 Aligned_cols=34 Identities=26% Similarity=0.143 Sum_probs=31.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
..||+||||+|+||+.+|.+|++.| +|+|||.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 4699999999999999999999999 999999864
No 75
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.11 E-value=3e-06 Score=72.99 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
.+|+||||||.+|+.+|.+|++. + +|+|||++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 38999999999999999999998 8 9999999864
No 76
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.10 E-value=3.2e-06 Score=74.23 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
+||+||||+|+||..+|.+|++.| +|+|||+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 489999999999999999999999 9999998
No 77
>PLN02507 glutathione reductase
Probab=98.10 E-value=3.5e-06 Score=75.34 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=31.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
.++||+||||+|+||..+|.++++.| +|+|+|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 55799999999999999999999999 9999995
No 78
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.09 E-value=3.6e-06 Score=75.42 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=32.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.++|+||||+| +|+.+|.++++.| +|+|||+...
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 357999999999 9999999999999 9999998764
No 79
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.09 E-value=3.6e-06 Score=72.54 Aligned_cols=31 Identities=42% Similarity=0.497 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhC--C-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~ 38 (177)
|+||||+|+||+.+|.+|++. + +|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999997 7 999999987
No 80
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.09 E-value=3.8e-06 Score=74.02 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 79999999999999999999999 999999853
No 81
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=3.9e-06 Score=74.22 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
.||+||||+|+||..+|.++++.| +|+|+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 399999999999999999999999 9999996
No 82
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.08 E-value=4.4e-06 Score=71.22 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=34.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
..++|+||||+|.||+|+|++||+.| +||+||.-+..+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn 41 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN 41 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence 56899999999999999999999999 999999876543
No 83
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.08 E-value=4e-06 Score=72.03 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+|++|||+|++|+++|..|++.| +|+|+|+-+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 389999999999999999999999 999999764
No 84
>KOG0029|consensus
Probab=98.07 E-value=4.2e-06 Score=74.96 Aligned_cols=36 Identities=33% Similarity=0.330 Sum_probs=32.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
....+|||||||.||+.+|..|.+.| +|+||||-.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 34679999999999999999999999 9999999544
No 85
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.07 E-value=4.5e-06 Score=75.12 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 2 PTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+..++||+|||+|++|+++|..|++.| +|+|||+-+.
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4457899999999999999999999999 9999998864
No 86
>PTZ00367 squalene epoxidase; Provisional
Probab=98.07 E-value=4.1e-06 Score=76.07 Aligned_cols=35 Identities=40% Similarity=0.386 Sum_probs=32.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+.++|+||||+|++|+++|..|++.| +|+|||+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46799999999999999999999999 999999975
No 87
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.07 E-value=4.4e-06 Score=76.69 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=32.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...||+||||||..|+.+|..||..| +|+|||++.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 34599999999999999999999999 999999984
No 88
>PRK13748 putative mercuric reductase; Provisional
Probab=98.07 E-value=4.4e-06 Score=75.20 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
..||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3699999999999999999999999 99999986
No 89
>PRK08244 hypothetical protein; Provisional
Probab=98.06 E-value=4.9e-06 Score=73.83 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
++||+|||+|++|+++|..|++.| +|+|||+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999 99999997653
No 90
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.05 E-value=5e-06 Score=75.04 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.++|+||||+|.||+.+|.++++.| +|+|||+++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4699999999999999999999999 999999988
No 91
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.05 E-value=4.5e-06 Score=71.36 Aligned_cols=33 Identities=45% Similarity=0.309 Sum_probs=30.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhC---C-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH---H-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG 37 (177)
..+|+||||+|++|+++|..|++. | +|+|||+-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999998 9 99999994
No 92
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=5.2e-06 Score=73.28 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 599999999999999999999999 99999986
No 93
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.04 E-value=5.5e-06 Score=73.43 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-|+||||||.+|+++|.+|+++| +|+|||+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 48999999999999999999999 99999987543
No 94
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=6.1e-06 Score=75.21 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++.| +|+|||.+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 4689999999999999999999999 9999999854
No 95
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=5.8e-06 Score=72.67 Aligned_cols=32 Identities=41% Similarity=0.438 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.||+||||+|+||..+|.+|++.+ +|+|||++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 499999999999999999999999 99999983
No 96
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.03 E-value=5.2e-06 Score=71.23 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
||+||||+|++|+++|..|++. + +|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 8999999999999999999997 5 9999999864
No 97
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.03 E-value=5.8e-06 Score=75.31 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|.||+.+|.++++.| +|+|||++..
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45799999999999999999999999 9999998864
No 98
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.03 E-value=6.3e-06 Score=74.56 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=31.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
..||+||||||+||+.+|.+|++.+ +|+|||++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4599999999999999999999999 999999864
No 99
>PRK07190 hypothetical protein; Provisional
Probab=98.02 E-value=6.6e-06 Score=73.35 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+|+||||+|++|+++|..|++.| +|+|||+-+..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4589999999999999999999999 99999998643
No 100
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.02 E-value=5.9e-06 Score=73.84 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=30.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
++.||+||||+|+||..+|.+|++.| +|+|||+
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 34699999999999999999999999 9999996
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.01 E-value=8.2e-06 Score=73.33 Aligned_cols=37 Identities=35% Similarity=0.257 Sum_probs=33.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
...+||||||+|++|+++|..|++.| +|+|||+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34799999999999999999999999 99999998643
No 102
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.01 E-value=5.1e-06 Score=72.77 Aligned_cols=32 Identities=41% Similarity=0.462 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHh----CC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSL----HH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~----~g-~VLvLEaG~ 38 (177)
||+||||+|++|+++|..|++ .| +|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999999 78 999999943
No 103
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.01 E-value=6.5e-06 Score=70.91 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
++|++|||+|++|+++|..|++.| +|+|||+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 589999999999999999999999 9999999874
No 104
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.01 E-value=7.2e-06 Score=70.75 Aligned_cols=35 Identities=29% Similarity=0.215 Sum_probs=31.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~ 38 (177)
...+|+||||+|..|+.+|..|++. | +|+|||++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 4569999999999999999999984 7 799999975
No 105
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=7e-06 Score=74.48 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 5699999999999999999999999 9999999854
No 106
>PRK06847 hypothetical protein; Provisional
Probab=98.00 E-value=7.4e-06 Score=69.65 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|+. ..|+||||+|++|+++|..|++.| +|+|+|+-..
T Consensus 1 m~~--~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAA--VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCC--cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 454 579999999999999999999999 9999998754
No 107
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.00 E-value=6.9e-06 Score=74.10 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=33.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|.||+.+|.++++.| +|+|||++..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 34699999999999999999999999 9999999864
No 108
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=7.2e-06 Score=74.87 Aligned_cols=36 Identities=19% Similarity=-0.011 Sum_probs=32.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 34699999999999999999999999 9999999753
No 109
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.00 E-value=7e-06 Score=72.75 Aligned_cols=32 Identities=34% Similarity=0.275 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
..||+||||+|+||+.+|.+|++.+ +|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4699999999999999999999999 9999998
No 110
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.99 E-value=6.8e-06 Score=70.42 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+|+||||+|++|+++|..|++.| +|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 79999999999999999999999 999999874
No 111
>PRK08275 putative oxidoreductase; Provisional
Probab=97.98 E-value=7.5e-06 Score=74.02 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=31.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++. + +|+|||++..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 469999999999999999999986 6 9999999864
No 112
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.98 E-value=7.4e-06 Score=70.63 Aligned_cols=32 Identities=41% Similarity=0.429 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.+|++|||+|++|+++|..|++.| +|+|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 579999999999999999999999 99999997
No 113
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.98 E-value=6.8e-06 Score=71.00 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.+|++|||+|++|+++|..|++.| +|+|||+-
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 489999999999999999999999 99999985
No 114
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.97 E-value=9.1e-06 Score=69.12 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=33.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+|+||||+|..|+.+|..|++.| +|+|||++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4589999999999999999999999 99999998753
No 115
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.97 E-value=8e-06 Score=74.88 Aligned_cols=35 Identities=26% Similarity=-0.021 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 4689999999999999999999999 9999999864
No 116
>PRK06184 hypothetical protein; Provisional
Probab=97.97 E-value=8e-06 Score=72.70 Aligned_cols=35 Identities=37% Similarity=0.385 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.+||+|||+|++|+++|..|++.| +|+|||+-+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 489999999999999999999999 99999997543
No 117
>PRK07588 hypothetical protein; Provisional
Probab=97.97 E-value=9e-06 Score=69.79 Aligned_cols=33 Identities=36% Similarity=0.228 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
|+||||+|++|+++|..|++.| +|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 7999999999999999999999 99999998653
No 118
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.97 E-value=7.7e-06 Score=72.97 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=30.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-C-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG 37 (177)
..||+||||+|+||..+|.++|+. | +|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999996 8 99999973
No 119
>PRK06834 hypothetical protein; Provisional
Probab=97.97 E-value=7.9e-06 Score=72.86 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+|+||||+|++|+++|..|++.| +|+|||+-+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 489999999999999999999999 9999998754
No 120
>PLN02661 Putative thiazole synthesis
Probab=97.96 E-value=8.3e-06 Score=69.99 Aligned_cols=37 Identities=38% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCC
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDF 39 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~ 39 (177)
...++|+||||+|++|+.+|..|++. + +|+|||++..
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 34578999999999999999999986 6 9999999754
No 121
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.96 E-value=8.5e-06 Score=74.81 Aligned_cols=35 Identities=23% Similarity=0.122 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 4689999999999999999999999 9999999753
No 122
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.96 E-value=8.4e-06 Score=70.41 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+|++|||+|++|+++|..|++.| +|+|||+-+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 479999999999999999999999 9999999874
No 123
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.96 E-value=6.7e-06 Score=73.03 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=29.6
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+||||||.+|+++|.+|+++| +|+|||+-...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 699999999999999999999 99999997653
No 124
>PLN02576 protoporphyrinogen oxidase
Probab=97.96 E-value=1e-05 Score=71.63 Aligned_cols=37 Identities=32% Similarity=0.303 Sum_probs=33.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~ 40 (177)
...+|+||||||.+|+++|.+|++. | +|+|||+....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 3467999999999999999999999 9 99999997654
No 125
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.95 E-value=1.1e-05 Score=72.97 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=33.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|.+|+++|.++++.| +|+|||+...
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45799999999999999999999999 9999999754
No 126
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.95 E-value=9.8e-06 Score=71.77 Aligned_cols=35 Identities=34% Similarity=0.353 Sum_probs=32.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...||+||||+|+||-++|.|+|+.| +|+|+|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 35799999999999999999999999 999999995
No 127
>PRK06126 hypothetical protein; Provisional
Probab=97.95 E-value=1.1e-05 Score=72.56 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=33.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+||+|||+|++|+++|..|++.| +|+|||+-+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45699999999999999999999999 9999998754
No 128
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=9.7e-06 Score=73.93 Aligned_cols=35 Identities=23% Similarity=0.074 Sum_probs=32.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 3589999999999999999999999 9999999743
No 129
>PLN02546 glutathione reductase
Probab=97.95 E-value=9.3e-06 Score=73.64 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=30.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
.++||+||||+|+||..+|.++++.| +|+|+|.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 34699999999999999999999999 9999995
No 130
>PLN02268 probable polyamine oxidase
Probab=97.94 E-value=1e-05 Score=70.43 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
++||||+|.+|+.+|.+|.+.| +|+||||..+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 7999999999999999999999 99999997654
No 131
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.94 E-value=9.3e-06 Score=71.34 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++||||||+|.||+.+|.+++ .+ +|+|||++...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 5799999999999999999974 68 99999998653
No 132
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.94 E-value=9.1e-06 Score=74.36 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=32.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++. | +|+|||++..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 368999999999999999999998 8 9999999753
No 133
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.94 E-value=1e-05 Score=69.86 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|+||||+|.+|+.+|.+|++.+ +|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 7999999999999999999999 9999999853
No 134
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.93 E-value=9.4e-06 Score=74.78 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+|+||||||.+|+.+|..|++.| +|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999 999999985
No 135
>PRK10262 thioredoxin reductase; Provisional
Probab=97.93 E-value=1.3e-05 Score=67.13 Aligned_cols=37 Identities=30% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
|-+-..+|++|||+|+||+.+|..|++.+ +|+++|..
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 55667899999999999999999999999 99999864
No 136
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.93 E-value=1.2e-05 Score=72.93 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=32.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.++|+||||+|.+|+.+|.+|++.| +|+|||+...
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 35799999999999999999999999 9999998754
No 137
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.92 E-value=1.1e-05 Score=71.47 Aligned_cols=32 Identities=34% Similarity=0.355 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+|+||||+|.||+.+|.++++.| +|+|||++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 79999999999999999999999 999999975
No 138
>PRK07236 hypothetical protein; Provisional
Probab=97.92 E-value=1.5e-05 Score=68.46 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=33.1
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.-...|+||||||++|+++|.-|++.| +|+|+|+.+.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 334589999999999999999999999 9999999763
No 139
>PRK06753 hypothetical protein; Provisional
Probab=97.92 E-value=1.2e-05 Score=68.34 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
|+||||||++|+++|..|++.| +|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999 99999998753
No 140
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.92 E-value=1.1e-05 Score=72.01 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
+|+||||||.+|+++|.+|++. + +|+|||++..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 6999999999999999999996 6 9999999763
No 141
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.92 E-value=1.1e-05 Score=74.11 Aligned_cols=35 Identities=31% Similarity=0.087 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++.| +|+|||.+..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 4689999999999999999999999 9999999864
No 142
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.91 E-value=1.3e-05 Score=68.38 Aligned_cols=33 Identities=39% Similarity=0.328 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
|+||||+|++|+++|..|++.| +|+|+|+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999998 99999998654
No 143
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=1.4e-05 Score=73.62 Aligned_cols=34 Identities=26% Similarity=0.141 Sum_probs=31.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.++||||||+|.||+.+|.++++.| +|+|||...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999 999999743
No 144
>PRK07208 hypothetical protein; Provisional
Probab=97.90 E-value=1.4e-05 Score=70.39 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..|+||||||.+|+++|.+|++.| +|+|||+...
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 468999999999999999999999 9999999654
No 145
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.90 E-value=1.3e-05 Score=69.99 Aligned_cols=33 Identities=27% Similarity=0.190 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
|+||||+|.||+.+|.++++.| +|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 8999999999999999999998 99999998653
No 146
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.90 E-value=1.6e-05 Score=68.20 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..|+||||+|++|+++|..|++.| +|+|+|+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 479999999999999999999999 9999999764
No 147
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.90 E-value=1.2e-05 Score=72.63 Aligned_cols=32 Identities=28% Similarity=0.097 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 8999999999999999999999 9999999763
No 148
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.90 E-value=1.4e-05 Score=69.93 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHhC----C-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~~ 40 (177)
.|+||||||.+|+++|.+|++. | +|+|||+....
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 6899999999999999999998 9 99999997653
No 149
>PRK14727 putative mercuric reductase; Provisional
Probab=97.88 E-value=1.6e-05 Score=70.55 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=32.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 34699999999999999999999999 999999873
No 150
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.87 E-value=1.5e-05 Score=73.61 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+||||||+|.||+.+|.++++.| +|+|||.....
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4689999999999999999999999 99999987653
No 151
>PRK07233 hypothetical protein; Provisional
Probab=97.87 E-value=1.8e-05 Score=68.23 Aligned_cols=33 Identities=39% Similarity=0.409 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
++||||+|.+|+++|..|++.| +|+|||+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 5899999999999999999999 99999998754
No 152
>PLN02676 polyamine oxidase
Probab=97.87 E-value=1.7e-05 Score=70.74 Aligned_cols=40 Identities=35% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
|.....+|+||||+|.+|+.+|.+|++.| +|+|||+..+.
T Consensus 21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 44456789999999999999999999999 49999997654
No 153
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.87 E-value=1.7e-05 Score=61.56 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=26.0
Q ss_pred EEECCChHHHHHHHHHHhCC-c-EEEEecCCCC
Q psy2463 10 NIVGAGTAGCVLANRLSLHH-T-VLLIEAGDFP 40 (177)
Q Consensus 10 IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~~ 40 (177)
||||+|++|+.+|.+|.+.| + |+|||++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence 79999999999999999999 6 9999998654
No 154
>PLN02815 L-aspartate oxidase
Probab=97.87 E-value=1.7e-05 Score=72.52 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=32.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~ 39 (177)
..++||||||+|.||+.+|.++++.++|+|||.+..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~ 62 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDEP 62 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCCCEEEEECCCC
Confidence 346899999999999999999999889999999764
No 155
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.87 E-value=1.6e-05 Score=73.43 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+||+||||+|+||..+|.++++.| +|+|+|.+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 799999999999999999999999 99999964
No 156
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.6e-05 Score=72.55 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 359999999999999999999999 9999997653
No 157
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.5e-05 Score=72.36 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++. + +|+|||++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 458999999999999999999986 5 9999999854
No 158
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.5e-05 Score=71.81 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=31.7
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|.||+.+|.++ +.| +|+|||++..
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 3568999999999999999999 889 9999999753
No 159
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.86 E-value=1.7e-05 Score=70.89 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=31.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
+..+|+||||||..|+++|..|++. + +|+|||+...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4569999999999999999999985 5 9999998754
No 160
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.85 E-value=1.9e-05 Score=70.69 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=32.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~ 39 (177)
+..+|+||||||..|+.+|..|++. + +|+|||+...
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 4579999999999999999999995 4 8999999853
No 161
>PRK12839 hypothetical protein; Provisional
Probab=97.85 E-value=2.1e-05 Score=71.49 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=33.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|.+|+++|..|++.+ +|+|||++..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 55799999999999999999999999 9999998754
No 162
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.85 E-value=1.8e-05 Score=72.73 Aligned_cols=36 Identities=33% Similarity=0.250 Sum_probs=32.4
Q ss_pred CccccEEEECCChHHHHHHHHHHh-CC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEaG~~ 39 (177)
..++||+|||+|++|+++|..|++ .| +|+|||+-+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 347999999999999999999999 59 9999998754
No 163
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.84 E-value=2e-05 Score=68.41 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
++||||||.||+++|.+|++.| +|+|||+....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 5899999999999999999965 89999996543
No 164
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.83 E-value=1.9e-05 Score=70.34 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+.||+||||+|+||..+|.++++.| +|+|||++
T Consensus 1 ~~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred CccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999 99999963
No 165
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.83 E-value=2.1e-05 Score=69.17 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+||+||||+|.+|+.+|.+|++.+ +|+|||+|.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 489999999999999999999999 999999985
No 166
>PRK11445 putative oxidoreductase; Provisional
Probab=97.82 E-value=2e-05 Score=67.05 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCCcEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHHTVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~ 38 (177)
||++|||+|+||+++|..|++.-+|+|||+-+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCC
Confidence 89999999999999999998755999999875
No 167
>PRK06996 hypothetical protein; Provisional
Probab=97.81 E-value=2.2e-05 Score=67.79 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=31.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-----cEEEEecCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-----TVLLIEAGD 38 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-----~VLvLEaG~ 38 (177)
...+|++|||+|++|+++|..|++.| +|+|||+..
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34589999999999999999999874 699999975
No 168
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.81 E-value=2.1e-05 Score=71.27 Aligned_cols=35 Identities=31% Similarity=0.238 Sum_probs=31.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++||||||+|.||+.+|.++++ | +|+|||++..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence 456999999999999999999864 8 9999999764
No 169
>PRK07538 hypothetical protein; Provisional
Probab=97.80 E-value=2.4e-05 Score=67.85 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|+||||+|++|+++|..|++.| +|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 8999999999999999999999 9999999764
No 170
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.80 E-value=2.6e-05 Score=70.80 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=31.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+| +|.++|.+.++.| +|+|||+...
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 458999999999 8999999999999 9999998754
No 171
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.80 E-value=2.7e-05 Score=60.16 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|+||||+|+||..+|.+|++.+ +|+|+|..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 7999999999999999999989 999997765
No 172
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.78 E-value=2.9e-05 Score=75.87 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=33.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+||||||+|.||+.+|.+.++.| +|+|||+++.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 45699999999999999999999999 9999999864
No 173
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.9e-05 Score=65.44 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=30.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-c-EEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~ 38 (177)
..||+||||||+||+.+|-.+++.+ + +||+|.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 3699999999999999999999999 7 78888763
No 174
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.77 E-value=3.2e-05 Score=67.87 Aligned_cols=36 Identities=36% Similarity=0.285 Sum_probs=33.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+..|+||||+|.+|+++|.+|.+.| +|+|||+-.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence 56799999999999999999999999 9999999654
No 175
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.77 E-value=2.5e-05 Score=70.01 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++ + +|+|||++..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 36899999999999999999987 8 9999999864
No 176
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.75 E-value=3.5e-05 Score=69.44 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=31.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~ 39 (177)
..++||||||+|.||+.+|.++++..+|+|||++..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~ 41 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPL 41 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCC
Confidence 456899999999999999999987449999999864
No 177
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.74 E-value=3.4e-05 Score=68.68 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~ 39 (177)
++|+||||+|.||+.+|.++++.+.|+|||++..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGRVIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCCEEEEEccCC
Confidence 5899999999999999999999878999999854
No 178
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.74 E-value=3.3e-05 Score=70.35 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
.++||||||+|.||+.+|.++++. + +|+|||++..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 468999999999999999999986 4 9999999753
No 179
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.72 E-value=3.6e-05 Score=69.91 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=32.0
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC----cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH----TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~ 39 (177)
..++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 34689999999999999999999974 8999998764
No 180
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.72 E-value=3.3e-05 Score=70.34 Aligned_cols=35 Identities=29% Similarity=0.149 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
.++|+||||+|.||+.+|.++++. + +|+|||++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 468999999999999999999986 5 9999999754
No 181
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.72 E-value=4.3e-05 Score=68.50 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=30.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
...||++|||||+||+.+|.+|++.| +|+|+|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 44699999999999999999999999 9999986
No 182
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.71 E-value=3.8e-05 Score=70.42 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHH----hCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLS----LHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa----~~g-~VLvLEaG~~ 39 (177)
||||||||.||+.+|.+++ +.| +|+|||++..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 678 9999999763
No 183
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.70 E-value=4e-05 Score=73.10 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|+||||+|.||+.+|.++++.| +|+|||++..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4689999999999999999999999 9999999764
No 184
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.69 E-value=4.6e-05 Score=69.40 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~ 39 (177)
.++|+||||+|.||+.+|.++++..+|+|||++..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 56999999999999999999986449999999753
No 185
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.68 E-value=5.8e-05 Score=66.97 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||+|++|+++|.+|.+.| +|+|+|++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 479999999999999999999999 9999999764
No 186
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.67 E-value=5.9e-05 Score=68.67 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.8
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..++|+||||+|.+|+.+|.++++.| +|+|||+...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~ 46 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV 46 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45799999999999999999999999 9999998653
No 187
>PRK05868 hypothetical protein; Validated
Probab=97.67 E-value=5.5e-05 Score=64.98 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
|++|||+|++|+++|..|++.| +|+|+|+-+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999 99999987653
No 188
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.66 E-value=5.9e-05 Score=66.37 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-|++|||||.+|+.+|..||+.| +|.|+|..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 48999999999999999999999 99999987654
No 189
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.65 E-value=5.3e-05 Score=68.81 Aligned_cols=37 Identities=19% Similarity=0.036 Sum_probs=34.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..++|+||||+|.||+.+|.++++.| +|+|||.....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 45799999999999999999999999 99999998754
No 190
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.65 E-value=5.2e-05 Score=65.93 Aligned_cols=27 Identities=41% Similarity=0.469 Sum_probs=25.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLI 34 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvL 34 (177)
||||||+|.|||.+|..+|+.| +|+||
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999 99999
No 191
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.64 E-value=6.2e-05 Score=67.71 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=33.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+|+||||||..|+=+|..+|-.| +|+|+|++.--
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence 6799999999999999999999999 99999999743
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.63 E-value=6.4e-05 Score=67.38 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=30.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
...||++|||||+||..+|.+|++.| +|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 44699999999999999999999999 9999975
No 193
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.61 E-value=7.5e-05 Score=65.45 Aligned_cols=32 Identities=38% Similarity=0.389 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+++|||+|.+|+++|.+|+++| +|+|||+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4899999999999999999999 9999999764
No 194
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.61 E-value=7e-05 Score=65.80 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHhC------C-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLH------H-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~------g-~VLvLEaG~~~ 40 (177)
++||||||.+|+++|.+|++. + +|+|||+-.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL 42 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence 589999999999999999984 5 89999997653
No 195
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.57 E-value=9e-05 Score=61.52 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+++|||+|.+|+++|..|++.| +|+|+|+|.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 6899999999999999999999 9999999864
No 196
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.56 E-value=0.00011 Score=66.96 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=32.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|+||||+|.+|+.+|.++++.| +|+|||+...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~ 50 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4689999999999999999999999 9999998653
No 197
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.55 E-value=9.5e-05 Score=64.89 Aligned_cols=33 Identities=33% Similarity=0.305 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
||++|||+|.+|+.+|.+|++.+ +|+|||.|..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 69999999999999999999999 9999999963
No 198
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.55 E-value=9.5e-05 Score=65.21 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
++||||+|+||..+|.+|++.| +|+|||++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 6899999999999999999999 999999864
No 199
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.0001 Score=65.11 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=32.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~ 39 (177)
..+|++|||+|++|+.+|.+|.+.+ . +++||+...
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 4589999999999999999999999 6 999999863
No 200
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.54 E-value=9.3e-05 Score=63.90 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-+++|||||++|+++|.-|++.| +|.|+|+-+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 46999999999999999999999 9999998754
No 201
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=9.4e-05 Score=65.29 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+||+||||+|+||..+|.++ .| +|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC
Confidence 48999999999999988774 58 999999853
No 202
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.52 E-value=8.7e-05 Score=66.62 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~ 39 (177)
.++|+||||+|.||+.+|.++++. +|+|||++..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~~-~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAPR-PVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCcC-CEEEEECCCC
Confidence 468999999999999999998733 9999999875
No 203
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.49 E-value=0.00013 Score=66.81 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
||+||||+|.||+.+|..|++.| +|+|||....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 79999999999999999999999 9999998743
No 204
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.48 E-value=0.00014 Score=70.15 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+|++|||+|+||+.+|..|++.+ +|+|+|++...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3589999999999999999999999 99999997653
No 205
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.47 E-value=0.00015 Score=69.72 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=31.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+++|||||+||..+|..|++.| +|+|+|+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3479999999999999999999999 9999998653
No 206
>KOG2415|consensus
Probab=97.47 E-value=0.0001 Score=64.46 Aligned_cols=37 Identities=32% Similarity=0.231 Sum_probs=30.7
Q ss_pred CccccEEEECCChHHHHHHHHHHh----CC---cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSL----HH---TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~----~g---~VLvLEaG~~~ 40 (177)
...+|+||||+|+||+.+|.||-+ +. +|+|||.+...
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~ 117 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV 117 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence 346999999999999999999854 23 99999997643
No 207
>PLN02568 polyamine oxidase
Probab=97.47 E-value=0.00016 Score=65.36 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhC-----C-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLH-----H-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~-----g-~VLvLEaG~~~ 40 (177)
..||||||+|.+|+++|.+|++. + +|+|||+....
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 37999999999999999999964 4 79999997653
No 208
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.46 E-value=0.00014 Score=67.22 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=31.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...+++|||||++|+++|..|++.| +|.|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4589999999999999999999999 999999865
No 209
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.46 E-value=8.4e-05 Score=64.60 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=28.7
Q ss_pred EEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 10 NIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 10 IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
||||+|+||+.+|.+|++.| +|+|||+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 69999999999999999999 99999997653
No 210
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.45 E-value=0.00013 Score=64.28 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=26.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.||+||||+|+||..+|.++ .| +|+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCC
Confidence 59999999999999887654 58 99999985
No 211
>KOG0685|consensus
Probab=97.45 E-value=0.00016 Score=63.84 Aligned_cols=37 Identities=38% Similarity=0.369 Sum_probs=32.5
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
+...-+||||+|.||+.+|.||-+.+ .|+|+|+..+.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 34467999999999999999999887 99999998764
No 212
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.44 E-value=0.00017 Score=63.63 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.|++|||+|.+||.+|..||+.| +|+|+|.-+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 37999999999999999999999 9999997544
No 213
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.44 E-value=0.00014 Score=63.97 Aligned_cols=36 Identities=31% Similarity=0.231 Sum_probs=32.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
.+|||+|||||..|+++|.+|++-. +|+|||+=...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 3699999999999999999999964 99999997654
No 214
>KOG2820|consensus
Probab=97.43 E-value=0.00013 Score=62.09 Aligned_cols=36 Identities=31% Similarity=0.239 Sum_probs=33.0
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
....|+||||+|.-|+.+|.+||+.+ ++|+||+=+.
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence 45689999999999999999999999 9999999764
No 215
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.42 E-value=0.00014 Score=66.64 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|||||+|.||+.+|.++++.| +|+|||++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 689999999999999999999 999999986
No 216
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.40 E-value=0.00024 Score=63.03 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=31.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+++|||+|+||+.+|..|++.| +|+|+|+.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3479999999999999999999999 9999998754
No 217
>PLN02529 lysine-specific histone demethylase 1
Probab=97.38 E-value=0.00021 Score=66.83 Aligned_cols=36 Identities=31% Similarity=0.286 Sum_probs=32.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
....|+||||+|++|+.+|..|++.| +|+|||+-..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 34689999999999999999999999 9999999654
No 218
>PRK12831 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.00027 Score=62.74 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=31.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...|++|||+|+||+.+|.+|++.| +|+|+|+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4579999999999999999999999 999999854
No 219
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.35 E-value=0.00025 Score=61.46 Aligned_cols=33 Identities=39% Similarity=0.439 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
.++|||+|+||+++|..|++.| +|.|+|+-+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 5899999999999999999986 99999997653
No 220
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00023 Score=63.27 Aligned_cols=33 Identities=39% Similarity=0.308 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.|+|+|+|.||+.+|.+||+.| .|.|+|++...
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 4899999999999999999999 99999999764
No 221
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.32 E-value=0.00027 Score=66.62 Aligned_cols=36 Identities=33% Similarity=0.352 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
...++||||+|.+|+.+|.+|++.| +|+|||+-...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 4589999999999999999999999 99999996543
No 222
>KOG3855|consensus
Probab=97.32 E-value=0.00022 Score=62.13 Aligned_cols=35 Identities=40% Similarity=0.458 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-----cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-----TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-----~VLvLEaG~~ 39 (177)
..||+||||||+.|..+|+.|..++ ||+|||+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3699999999999999999999765 8999999943
No 223
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.28 E-value=0.00034 Score=62.21 Aligned_cols=33 Identities=36% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+++|||+|.+|+++|.+|++.| +|+|+|+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 4799999999999999999999 99999996543
No 224
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.28 E-value=0.00033 Score=62.03 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|+||||+|++|..+|.+|++.+ +|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 7999999999999999999999 999999864
No 225
>PLN02612 phytoene desaturase
Probab=97.27 E-value=0.00041 Score=63.10 Aligned_cols=34 Identities=35% Similarity=0.305 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||+|.+|+++|.+|++.| +|+|+|+...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~ 127 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDV 127 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 478999999999999999999999 9999999654
No 226
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.26 E-value=0.00064 Score=45.60 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=30.9
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
++|||+|..|+-+|..|++.+ +|.|||+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 689999999999999999999 999999998754
No 227
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.26 E-value=0.00025 Score=62.86 Aligned_cols=33 Identities=45% Similarity=0.547 Sum_probs=26.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC----cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH----TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~~ 40 (177)
||||||+|+||..+|..|++.+ +|+|||.....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 7999999999999999999965 79999998644
No 228
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.24 E-value=0.0004 Score=61.31 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=30.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
.+||+||+|+|..-|++|.-||..| +||.|++...+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 4599999999999999999999999 999999988654
No 229
>KOG0405|consensus
Probab=97.24 E-value=0.00034 Score=60.05 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 2 PTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+....|||.|||+|.+|...|.|-|+.| +|.|+|+.
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 3456799999999999999999999999 99999998
No 230
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.23 E-value=0.00045 Score=60.92 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
...+++|||+|+||+.+|..|++.+ +|+|+|+....
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3479999999999999999999999 99999987643
No 231
>KOG4716|consensus
Probab=97.22 E-value=0.00035 Score=59.86 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=33.5
Q ss_pred CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+++||.||||+|.+|+.+|.+-|..| +|++|+.=..
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P 53 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP 53 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence 467899999999999999999999999 9999998643
No 232
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.22 E-value=0.00048 Score=60.80 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=31.7
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+++|||+|+||+.+|..|++.| +|+|+|+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3479999999999999999999999 9999998653
No 233
>KOG2614|consensus
Probab=97.17 E-value=0.00049 Score=59.90 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+-+|||||||.+|++.|.-|++.| +|+|+|+-.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 358999999999999999999999 9999999433
No 234
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0005 Score=58.60 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+||++|||+|.||.+.|.+|.+.| ++.+|-.|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 589999999999999999999999 9999999974
No 235
>KOG1399|consensus
Probab=97.16 E-value=0.00047 Score=61.07 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.-+++|||+|+||+++|..|.+.| .|.++|+....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 358999999999999999999999 99999998764
No 236
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.12 E-value=0.00064 Score=65.72 Aligned_cols=34 Identities=32% Similarity=0.289 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||||+||+.+|..|++.| +|+|+|++..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 479999999999999999999999 9999999754
No 237
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.10 E-value=0.00037 Score=60.94 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=27.4
Q ss_pred EECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 11 IVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 11 VVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
|||+|.+|+.+|.++++.| +|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 7999999999999999999 9999999764
No 238
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.10 E-value=0.0007 Score=63.44 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...+++|||||+||+.+|..|++.| +|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999 999999853
No 239
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.08 E-value=0.00064 Score=62.72 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||+|+||+.+|..|++.| +|+|+|+...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 469999999999999999999999 9999998754
No 240
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.04 E-value=0.00061 Score=64.02 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~ 39 (177)
+++|||+|+||+++|..|++. | +|+|||+-..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 589999999999999999997 7 9999998764
No 241
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.02 E-value=0.00099 Score=61.56 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||+|+||+.+|..|++.| +|+|+|+...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 479999999999999999999999 9999998754
No 242
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.02 E-value=0.00092 Score=64.26 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+|+|||||+||+.+|..|++.| +|+|+|+...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 478999999999999999999999 9999998653
No 243
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.00 E-value=0.00099 Score=64.21 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.-+++|||||+||+.+|..|++.| +|+|+|+...
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 468999999999999999999999 9999998653
No 244
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.98 E-value=0.0013 Score=55.93 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+++|||+|++|+.+|.+|++.+ +|.|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 468999999999999999999999 99999998654
No 245
>PLN03000 amine oxidase
Probab=96.96 E-value=0.0012 Score=62.75 Aligned_cols=36 Identities=33% Similarity=0.341 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
...++||||+|.+|+.+|.+|++.+ +|+|||+..+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 4589999999999999999999999 99999997654
No 246
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.95 E-value=0.00098 Score=59.00 Aligned_cols=33 Identities=39% Similarity=0.393 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
-++|||||.+|+.+|.+|.+.+ .|.|+|++.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 3799999999999999999986 89999998654
No 247
>PLN02487 zeta-carotene desaturase
Probab=96.93 E-value=0.0013 Score=60.05 Aligned_cols=34 Identities=32% Similarity=0.275 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.+++|||+|.+|+.+|.+|++.| +|+|+|+.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 58999999999999999999999 99999997654
No 248
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.89 E-value=0.0013 Score=58.63 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-+++|||||.||+.+|..||+.| +|.|+|.-+..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 46899999999999999999999 99999996643
No 249
>PLN02976 amine oxidase
Probab=96.87 E-value=0.0014 Score=65.09 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=32.1
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
....|++|||+|++|+.+|.+|++.| +|+|||+...
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~ 727 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR 727 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence 34589999999999999999999999 9999998543
No 250
>KOG2665|consensus
Probab=96.82 E-value=0.00093 Score=56.83 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=32.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~~ 40 (177)
..+||.||||+|.-|++.|.+|+-. + +|+|||+-...
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4579999999999999999999975 3 99999997653
No 251
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.81 E-value=0.0016 Score=59.33 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhC----C-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~ 39 (177)
.-+++|||||.||+++|.+|+++ | +|.|||+-..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 36899999999999999999995 5 9999999654
No 252
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.80 E-value=0.0021 Score=57.63 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHh--CC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSL--HH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~--~g-~VLvLEaG~~~ 40 (177)
...++|||||+||+.+|..|++ .+ +|.|+|+-+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 4679999999999999999997 57 99999998754
No 253
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.77 E-value=0.0018 Score=58.65 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.|+|||||++|+++|+.|.+.| .|+++|+-.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence 4899999999999999999999 99999997654
No 254
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.75 E-value=0.0022 Score=57.28 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||+|++|+.+|..|++.+ +|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 369999999999999999999999 9999998764
No 255
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.70 E-value=0.0023 Score=56.80 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=31.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+++|||+|++|+.+|..|++.| +|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3478999999999999999999999 9999998764
No 256
>KOG4254|consensus
Probab=96.69 E-value=0.0017 Score=57.39 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=33.4
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+..||+||||+|-.|+++|+.|++-+ +|+|||+-...
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~ 49 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVI 49 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeec
Confidence 45799999999999999999999999 99999997443
No 257
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.69 E-value=0.0023 Score=55.34 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
.++||||+|+||..+|.+|.+.+ +|+|+++....
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 47999999999999999999976 89999987643
No 258
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.64 E-value=0.0023 Score=58.96 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+++|||+|++|+.+|..|++.| +|+|+|+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 478999999999999999999999 9999999874
No 259
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.55 E-value=0.0029 Score=60.78 Aligned_cols=32 Identities=25% Similarity=0.137 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
...|+|||+|+||..+|..|++.| +|.|+|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 468999999999999999999999 99999974
No 260
>KOG1335|consensus
Probab=96.55 E-value=0.0025 Score=55.38 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=30.3
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
..||+||||+|++|-++|.+-|+.| +...+|.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk 70 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK 70 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEec
Confidence 4699999999999999999999999 9889998
No 261
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.54 E-value=0.0031 Score=55.10 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~ 39 (177)
.+||||+|+||+.+|.+|++.+ +|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 5899999999999999999864 8999999875
No 262
>PRK13984 putative oxidoreductase; Provisional
Probab=96.43 E-value=0.0045 Score=56.55 Aligned_cols=35 Identities=29% Similarity=0.167 Sum_probs=31.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
...+++|||+|+||..+|..|++.| +|.|+|+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3568999999999999999999999 9999998764
No 263
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.38 E-value=0.0045 Score=54.37 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
.+||||+|+||..+|.+|.+.+ +|+|+|+....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 5999999999999999998853 89999999753
No 264
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.38 E-value=0.0045 Score=56.15 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.-+++|||+|++|+.+|..|++.| +|+|+|+..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 368999999999999999999999 999999754
No 265
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.34 E-value=0.0035 Score=55.89 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCcEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHHTVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~ 40 (177)
||+|||+|.||+.+|..|+++-+|+||-+++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 999999999999999999987799999988643
No 266
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.003 Score=56.99 Aligned_cols=35 Identities=20% Similarity=0.074 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.|||||||+|-||+-+|...|+-| ++|||--..+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dt 39 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDT 39 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCc
Confidence 399999999999999999999999 99998776553
No 267
>KOG2960|consensus
Probab=96.24 E-value=0.0012 Score=53.48 Aligned_cols=32 Identities=38% Similarity=0.378 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHHHhC-C--cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG 37 (177)
+.|+||||+|.+|+.+|...+.+ + +|.+||+-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 57999999999999999999964 4 99999984
No 268
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.24 E-value=0.0059 Score=54.20 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=32.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~~ 40 (177)
..+|||+||||..|++++.-|++- + +|.|+|+-...
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence 469999999999999999999994 4 99999997654
No 269
>KOG2311|consensus
Probab=96.23 E-value=0.004 Score=55.57 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.5
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
..|||||||+|-|||-+|+.-|+-| +.|||-.-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 3689999999999999999999989 77777654
No 270
>PRK09897 hypothetical protein; Provisional
Probab=96.21 E-value=0.0064 Score=55.11 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
.+++|||+|++|..+|.+|++.. +|.|+|...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 37999999999999999999854 899999854
No 271
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.20 E-value=0.0065 Score=53.12 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=31.4
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
....++||||+|.||+.+|.+|.... +|+|||.-...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 34579999999999999999998666 99999877653
No 272
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.09 E-value=0.011 Score=50.74 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~ 39 (177)
.++||||+|+||..+|.+|.+.+ +|.||++...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 38999999999999999998854 8889987653
No 273
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.03 E-value=0.012 Score=52.92 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHH-hCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLS-LHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~~~ 40 (177)
.-+.|||||+||+.+|.+|+ +.+ +|.|+|+-+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46999999999999999876 467 99999998765
No 274
>KOG0042|consensus
Probab=96.01 E-value=0.0028 Score=57.19 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=32.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..++|++|||||+.|+=+|.--+-.| +|.|+|+|..-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 45699999999999999999888889 99999999753
No 275
>KOG3851|consensus
Probab=95.88 E-value=0.0078 Score=51.39 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.3
Q ss_pred CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDF 39 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~ 39 (177)
+..+.++|||||++|+.+|++++.+ + +|.+||--.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4568999999999999999999986 4 9999997654
No 276
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.85 E-value=0.014 Score=43.41 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+.|+|+|.-|+.+|++|++.+ +|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 579999999999999999998 999998887
No 277
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.71 E-value=0.013 Score=49.86 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhC---C-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~~ 40 (177)
.+||||+|.||..+|.+|.+. . +|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 389999999999999999753 3 99999987653
No 278
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.61 E-value=0.011 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=27.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
.||+|+||.|++++.+|..|.+.+ ++++||+-+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 589999999999999999999976 99999987654
No 279
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.019 Score=46.33 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.+||||+|.-|..+|..|++.| .|+++|.-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4899999999999999999999 9999998764
No 280
>KOG2404|consensus
Probab=95.41 E-value=0.016 Score=49.57 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
..+||||+|.||+.++++|...+ .|+|||.-..
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 36999999999999999999999 9999998554
No 281
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.014 Score=50.00 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.-+.|||+|.||+-+|.++|+.| .|.|-|--+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 35889999999999999999999 99999987643
No 282
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.40 E-value=0.023 Score=48.21 Aligned_cols=35 Identities=34% Similarity=0.301 Sum_probs=32.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
-+++|||+|..|+.+|..|++.| +|.|+|+.....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 58999999999999999999999 999999998653
No 283
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.027 Score=48.84 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=35.4
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
|-....||+||+|.|.-=|+++++||-++ +||.|++-...
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y 41 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY 41 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence 44456799999999999999999999999 99999997654
No 284
>KOG2844|consensus
Probab=95.28 E-value=0.022 Score=52.67 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=28.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-c-EEEEecC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAG 37 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG 37 (177)
....|++|||+|.+||-+|..||+.| + ++++|.-
T Consensus 37 ~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~ 72 (856)
T KOG2844|consen 37 PSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS 72 (856)
T ss_pred CCcccEEEEcCCchhHHHHHHHHHccccceEEEeee
Confidence 45689999999999999999999999 6 5566653
No 285
>KOG1276|consensus
Probab=95.26 E-value=0.026 Score=49.73 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
.-+++|||+|.+|+.+|..|+..+ .|.|.|++++.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 468999999999999999999987 57789998764
No 286
>KOG4405|consensus
Probab=95.24 E-value=0.022 Score=50.03 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=33.6
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+..||+||||.|..=+++|+..++.| +||=|+.-+.+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yY 43 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYY 43 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCcccc
Confidence 44699999999999999999999999 99999997654
No 287
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.87 E-value=0.027 Score=50.12 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-.|-|||||+||+.+|..|+..| .|++.|+=+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 57899999999999999999999 9999888543
No 288
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.73 E-value=0.036 Score=41.82 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=25.3
Q ss_pred EEECCChHHHHHHHHHHhC-----C-cEEEEecCC
Q psy2463 10 NIVGAGTAGCVLANRLSLH-----H-TVLLIEAGD 38 (177)
Q Consensus 10 IVVG~G~aG~v~A~rLa~~-----g-~VLvLEaG~ 38 (177)
.|||+|++|..++.+|.+. . +|.|+|..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 4899999999999999986 3 899999843
No 289
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.72 E-value=0.06 Score=45.20 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
|++.. -.+.|||+|.-|+.+|.+|+++| .|.++-++.
T Consensus 1 ~~~~~-m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSET-PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcC-cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 44433 35999999999999999999999 999998875
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.68 E-value=0.049 Score=47.04 Aligned_cols=33 Identities=36% Similarity=0.346 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|||++...
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 5899999999999999999999 99999998754
No 291
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.66 E-value=0.04 Score=48.85 Aligned_cols=37 Identities=30% Similarity=0.227 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhC----C--cEEEEecCCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH----H--TVLLIEAGDFPS 41 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~----g--~VLvLEaG~~~~ 41 (177)
..+|+|+||+|++|.-.|.+||.+ . +|++||.|.+..
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~ 59 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE 59 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence 469999999999999999999974 3 899999998764
No 292
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.59 E-value=0.052 Score=41.06 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=26.4
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+.|+|+|..|..+|.-|++++ +|.|..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 679999999999999999999 99997664
No 293
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.54 E-value=0.054 Score=45.43 Aligned_cols=31 Identities=35% Similarity=0.397 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+.|||+|+-|+.+|.+|++.| .|.++.++.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 5899999999999999999999 999999974
No 294
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.50 E-value=0.058 Score=46.19 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.|+|.++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 36899999999999999999999 99999998753
No 295
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.41 E-value=0.06 Score=47.64 Aligned_cols=34 Identities=32% Similarity=0.289 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|.+|+-+|..|++.+ +|.|||+++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 36899999999999999999999 99999998753
No 296
>KOG2853|consensus
Probab=94.32 E-value=0.04 Score=47.58 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=30.2
Q ss_pred ccccEEEECCChHHHHHHHHHHhC----C-cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~~ 40 (177)
...|++|||+|-.|+.+|.-|-+. + +|+|+|+-..+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 368999999999999999877652 4 99999997644
No 297
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.027 Score=48.77 Aligned_cols=33 Identities=27% Similarity=0.174 Sum_probs=28.0
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEA 36 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa 36 (177)
+--||++|||+|+||..+|-.-|++| .=|+-|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer 243 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER 243 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh
Confidence 34599999999999999999999999 4466666
No 298
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.21 E-value=0.072 Score=46.59 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|++...
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 5999999999999999999999 99999998754
No 299
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.16 E-value=0.06 Score=46.53 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=33.0
Q ss_pred CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPS 41 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~~ 41 (177)
..+-++-|||+|.+|+.+|.-|+...+|.|.||+....
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlG 43 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLG 43 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcccceEEEecccccc
Confidence 34578999999999999999999877999999987643
No 300
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.09 E-value=0.078 Score=46.55 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-+++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 47999999999999999999999 99999998753
No 301
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.99 E-value=0.084 Score=41.01 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.2
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.|||+|..|.-+|..++..| +|.|++.-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 679999999999999999999 9999988543
No 302
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.99 E-value=0.086 Score=46.51 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6999999999999999999999 99999998754
No 303
>KOG2755|consensus
Probab=93.94 E-value=0.047 Score=45.50 Aligned_cols=31 Identities=39% Similarity=0.537 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHhC-C--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~ 39 (177)
+||||||.||...|..||.. + .||||-+-+-
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 79999999999999999985 3 8999988763
No 304
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.80 E-value=0.096 Score=46.50 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.| +|.|||+++..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 6899999999999999999999 99999998754
No 305
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.73 E-value=0.1 Score=46.03 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 46899999999999999999999 99999998653
No 306
>PRK07846 mycothione reductase; Reviewed
Probab=93.71 E-value=0.1 Score=46.11 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.| +|.|||++...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 36899999999999999999999 99999998754
No 307
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.66 E-value=0.13 Score=36.29 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+||||.|..|..+|..|.+.+ +|+++|.-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 699999999999999999987 9999998764
No 308
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.65 E-value=0.11 Score=45.94 Aligned_cols=33 Identities=27% Similarity=0.119 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|||+++..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 6899999999999999999999 99999998753
No 309
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.61 E-value=0.1 Score=43.14 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=26.6
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
+.|||+|.-|+.+|..|+++| +|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 789999999999999999999 9999887
No 310
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.58 E-value=0.11 Score=42.91 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=26.6
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
+.|||+|.-|+.+|.+|++.| +|.++.+
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 789999999999999999999 9999887
No 311
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.42 E-value=0.12 Score=44.93 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.+++.+...
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 36899999999999999999999 99999998754
No 312
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=0.1 Score=46.52 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC----cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH----TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~ 39 (177)
++++|||+|++|..+|..|.+.. +|-|+|.-++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 68999999999999999999865 5999997544
No 313
>KOG1439|consensus
Probab=93.29 E-value=0.045 Score=47.82 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.||+||+|.|.-=|+++.+||-+| +||.+++-...
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY 39 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence 499999999999999999999999 99999997654
No 314
>PRK06370 mercuric reductase; Validated
Probab=93.28 E-value=0.13 Score=45.34 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 36899999999999999999999 99999998754
No 315
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.27 E-value=0.13 Score=45.13 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|||+++..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 5899999999999999999999 99999998754
No 316
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.27 E-value=0.13 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 6899999999999999999999 99999998764
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.22 E-value=0.081 Score=46.45 Aligned_cols=36 Identities=39% Similarity=0.457 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHhC------------C--cEEEEecCCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLH------------H--TVLLIEAGDFPS 41 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~------------g--~VLvLEaG~~~~ 41 (177)
.-+++|||||+.|.-+|.+|++. . +|.|+|+|+..-
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 35799999999999999999862 1 699999999753
No 318
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.18 E-value=0.13 Score=45.14 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999 99999998753
No 319
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.17 E-value=0.14 Score=45.28 Aligned_cols=33 Identities=30% Similarity=0.219 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999999999 99999988753
No 320
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.08 E-value=0.15 Score=45.17 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 35899999999999999999999 99999998754
No 321
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.92 E-value=0.16 Score=44.57 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 6899999999999999999999 99999998754
No 322
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.90 E-value=0.18 Score=48.26 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhC----C-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~~ 40 (177)
.+||||+|+||..+|.+|.+. + +|.|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 799999999999999999753 3 89999998764
No 323
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.77 E-value=0.13 Score=48.62 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHHhC---C-cEEEEecCCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDFP 40 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~~ 40 (177)
+||||+|+||..+|.+|.+. + +|.|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999998763 3 89999998764
No 324
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.77 E-value=0.16 Score=37.16 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
.-++|||+|.-|+.+|..|+..| ++.|++-..-.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 45899999999999999999999 89999877643
No 325
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.69 E-value=0.15 Score=44.75 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~ 40 (177)
--+||||||.||.-+|.+|+.. + +|.||++-...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 3589999999999999999996 3 89999988754
No 326
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.57 E-value=0.17 Score=42.42 Aligned_cols=31 Identities=29% Similarity=0.262 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+.|||+|.-|+.+|..|+++| +|.+.+.-+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 4889999999999999999999 999998764
No 327
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.54 E-value=0.19 Score=43.79 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-.++|||+|..|+-+|..|++.+ +|.++|++..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 36899999999999999999999 9999998875
No 328
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.51 E-value=0.2 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|.++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 5899999999999999999999 99999998754
No 329
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.19 Score=41.61 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-+.|||+|.-|..+|..|+++| +|.+++.-.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 4889999999999999999999 999998653
No 330
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.40 E-value=0.21 Score=44.11 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.|||.++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 36899999999999999999999 99999998753
No 331
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.34 E-value=0.19 Score=45.12 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|.++..
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 7999999999999999999988 99999987654
No 332
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.28 E-value=0.21 Score=40.56 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 6899999999999999999988 99999998753
No 333
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.28 E-value=0.22 Score=44.22 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 6899999999999999999999 99999998754
No 334
>PRK06116 glutathione reductase; Validated
Probab=92.23 E-value=0.22 Score=43.68 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-.++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36899999999999999999999 99999998753
No 335
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.15 E-value=0.19 Score=39.22 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=24.9
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.|||.|.-|+++|..||+.| +|+.++..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 689999999999999999999 9999988764
No 336
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.15 E-value=0.22 Score=43.54 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHh--------------CC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSL--------------HH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~--------------~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++ .+ +|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 68999999999999999986 35 89999998754
No 337
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.09 E-value=0.23 Score=41.14 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+.|||+|.-|..+|..|+++| +|.+.+.-+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 789999999999999999999 999987653
No 338
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.07 E-value=0.22 Score=41.84 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=27.0
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+.|||+|.-|+.+|..|++++ .|.++.+-
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999999 99998874
No 339
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.05 E-value=0.31 Score=43.46 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS 41 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~ 41 (177)
-.+|||+|.-|+-.|.-++.-| +|.|||+++..-
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3899999999999999999999 999999998754
No 340
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.98 E-value=0.26 Score=36.32 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
++|||.|.-|+.+|..|+..| ++.+++...-.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 789999999999999999999 89998877543
No 341
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.96 E-value=0.25 Score=43.73 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 6899999999999999999999 99999998754
No 342
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.89 E-value=0.22 Score=41.99 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.|+|+|+-|+..|.+|++.| .|+++=+...
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 689999999999999999999 8988888774
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.87 E-value=0.22 Score=45.20 Aligned_cols=32 Identities=22% Similarity=0.046 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|||+|..|+-+|..|++.+ +|.++++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 6899999999999999999988 9999999875
No 344
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.87 E-value=0.18 Score=42.24 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 16 TAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 16 ~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.||+++|.+|++.| +|+|||+..+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 48999999999999 99999998764
No 345
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.73 E-value=0.24 Score=42.35 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|.-|+.+|..|+..| ++.|++...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 356999999999999999999999 899898875
No 346
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.70 E-value=0.29 Score=37.25 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=25.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLI 34 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvL 34 (177)
-.++|||+|..|.-.|..|.+.+ +|.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 35899999999999999999999 99888
No 347
>PRK10262 thioredoxin reductase; Provisional
Probab=91.70 E-value=0.27 Score=41.05 Aligned_cols=33 Identities=27% Similarity=0.145 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.++++....
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 6899999999999999999998 99999998643
No 348
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.69 E-value=0.25 Score=44.33 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+++|||+|..|+-+|..|+..+ +|.|++.++..
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 7999999999999999999988 99999998754
No 349
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.68 E-value=0.26 Score=45.89 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|||+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 6899999999999999999999 99999998754
No 350
>PLN02507 glutathione reductase
Probab=91.61 E-value=0.28 Score=43.97 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 6899999999999999999999 99999998753
No 351
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.59 E-value=0.27 Score=41.41 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+.|||+|.-|+.+|.+|+++| +|.++.+..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 3899999999999999999999 999998854
No 352
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.57 E-value=0.3 Score=42.74 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 6899999999999999999999 99999998754
No 353
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.49 E-value=0.35 Score=40.10 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=27.3
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+.|||+|.-|+.+|..|+..| +|.+.+.-.
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 889999999999999999999 999987643
No 354
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.44 E-value=0.26 Score=46.70 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.| +|.|+|.++..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 5899999999999999999999 99999988753
No 355
>PRK13748 putative mercuric reductase; Provisional
Probab=91.40 E-value=0.29 Score=44.19 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.++|||+|..|+-+|..|++.+ +|.|||+..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 6899999999999999999999 999999853
No 356
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.17 E-value=0.32 Score=40.52 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-+-|||+|.-|+-+|..|+.+| .|.+++.-+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4789999999999999999999 9999987654
No 357
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.17 E-value=0.33 Score=40.23 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.+.|||+|.-|..+|..|+.+| .|.+.+.-
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3789999999999999999999 99998864
No 358
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.17 E-value=0.34 Score=38.40 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
--++|||+|..|...|..|.+.| +|.|++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 36899999999999999999999 9999964
No 359
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.14 E-value=0.33 Score=43.00 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.++|||+|.+|..+|.-|++.| +|.++|...
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5899999999999999999999 999999654
No 360
>PRK14694 putative mercuric reductase; Provisional
Probab=91.09 E-value=0.34 Score=42.87 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.++|||+|..|+-+|..|++.+ +|.|++.+.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 6899999999999999999999 999999753
No 361
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.08 E-value=0.37 Score=37.19 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
++|||.|.-|+.+|..|+..| ++.|++...-
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 789999999999999999999 7999998753
No 362
>KOG1800|consensus
Probab=91.06 E-value=0.36 Score=42.25 Aligned_cols=36 Identities=31% Similarity=0.285 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDFP 40 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~~ 40 (177)
.+.-++|||||+||.-+|.+|-++ . +|-+.|.-+.+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 346899999999999999999884 3 99999998754
No 363
>PLN02546 glutathione reductase
Probab=91.04 E-value=0.33 Score=44.28 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.+ +|.|+|++...
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 6899999999999999999999 99999998753
No 364
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.97 E-value=0.33 Score=41.54 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||+|.-|+.+|..|+..| ++.|++...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467999999999999999999999 999999864
No 365
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.97 E-value=0.34 Score=40.83 Aligned_cols=31 Identities=26% Similarity=0.212 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+.|||+|.-|..+|.+|+++| .|.+..+-.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4889999999999999999999 999998853
No 366
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.95 E-value=0.35 Score=40.09 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-+.|||+|.-|+.+|..|+.+| +|.+.+.-+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3789999999999999999999 999988643
No 367
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.94 E-value=0.32 Score=42.56 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-.++|||+|..|..+|.+|++.| +|.+.+...
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45899999999999999999999 999999864
No 368
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.94 E-value=0.35 Score=41.20 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+-|||+|+-|+-+|..++..| +|.+.+.-+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 789999999999999999999 999998653
No 369
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.93 E-value=0.35 Score=38.28 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
...+.|||+|.-|+.+|..|+..| ++.|++...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 457999999999999999999999 788888763
No 370
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.80 E-value=0.26 Score=40.96 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
..-++|||.|.-|+.+|.-|+..| ++.|+|.-..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 467999999999999999999999 9999997654
No 371
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.78 E-value=0.33 Score=42.98 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
+|+|||+|.+|.-+|..|++.+ +|-++=+.+..
T Consensus 177 rV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred eEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 6899999999999999999999 99999888754
No 372
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.67 E-value=0.25 Score=34.69 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=26.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-.++|||+|..|..-+..|.+.| +|.|+-.-
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 46899999999999999999999 88887554
No 373
>PRK14727 putative mercuric reductase; Provisional
Probab=90.62 E-value=0.38 Score=42.75 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.++|||+|..|+-+|..|++.+ +|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 6899999999999999999999 99999975
No 374
>PTZ00058 glutathione reductase; Provisional
Probab=90.61 E-value=0.38 Score=43.99 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|++.| +|.|+|++...
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 5899999999999999999999 99999998753
No 375
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.51 E-value=0.53 Score=34.65 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG 37 (177)
.--++|||+|-+|..++..|++.| +|.|+-+-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 357899999999999999999999 58887653
No 376
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.41 E-value=0.38 Score=46.06 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|||+|..|+-+|..|++.| +|.|+|.++.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 4799999999999999999999 9999999875
No 377
>PRK04148 hypothetical protein; Provisional
Probab=90.34 E-value=0.3 Score=36.48 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-.+++||.| .|..+|..|++.| .|+.++.-+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 348999999 8888899999999 9999997664
No 378
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.32 E-value=0.42 Score=39.35 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
.+.|||+|.-|+.+|..|+..| .|++++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~ 34 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDI 34 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeC
Confidence 4889999999999999999999 9999873
No 379
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.22 E-value=0.44 Score=37.61 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=30.6
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
...-++|||.|.-|+.+|..|+..| ++.+++...-
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 3467999999999999999999999 8999887653
No 380
>KOG0404|consensus
Probab=90.21 E-value=0.34 Score=39.73 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-.++|||+|+|+-++|..++++- +-||.|-+-
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~ 41 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM 41 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence 46899999999999999999998 999999753
No 381
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.15 E-value=0.47 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.139 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~ 39 (177)
.++|||+|..|+-+|..|++.+ + |.|+++...
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 5899999999999999999888 5 999998653
No 382
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.14 E-value=0.46 Score=39.63 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=26.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
.+.|||+|.-|+.+|..|++.| +|.+++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~ 35 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDV 35 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 4889999999999999999999 9999985
No 383
>PRK08328 hypothetical protein; Provisional
Probab=90.08 E-value=0.46 Score=38.35 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=28.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|..|+.+|..|+..| ++.+++...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457999999999999999999999 888886554
No 384
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.99 E-value=0.47 Score=38.08 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|.-|+.+|..|+..| ++.|++...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 467999999999999999999999 888887765
No 385
>KOG0399|consensus
Probab=89.81 E-value=0.4 Score=47.35 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
..+-|||+|+||+.+|..|-+.| .|.|-|+-.+.
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 56889999999999999999999 99999997654
No 386
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.79 E-value=0.51 Score=39.26 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+.|||+|.-|+.+|.+|++++ .|.++.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3899999999999999999999 998888753
No 387
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.76 E-value=0.53 Score=38.28 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
...++|||.|.-|+.+|..|+..| ++.+++...-.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 467999999999999999999999 88888877543
No 388
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=89.72 E-value=0.45 Score=42.62 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHH---hCC-cEEEEecCCCC
Q psy2463 8 LENIVGAGTAGCVLANRLS---LHH-TVLLIEAGDFP 40 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa---~~g-~VLvLEaG~~~ 40 (177)
.++|||+|..|+-+|..|+ +.+ +|.|||+++..
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 5899999999999997554 347 99999998764
No 389
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.63 E-value=0.49 Score=41.36 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
+++|||+|.-|.++|..||+++ +|++..+-.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 6899999999999999999998 899987763
No 390
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.52 E-value=0.57 Score=37.36 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||+|.-|+.+|..|+..| ++.|++...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467999999999999999999999 799998874
No 391
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.47 E-value=0.51 Score=42.30 Aligned_cols=30 Identities=27% Similarity=0.115 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.++|||+|..|+-+|..|++.+ +|.|++..
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 6899999999999999999999 99999874
No 392
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.27 E-value=0.59 Score=38.10 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
...++|||.|.-|+.+|..|+..| ++.|++...-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 468999999999999999999999 8888887753
No 393
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.25 E-value=0.61 Score=36.81 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-++|+|.|.-|..+|.+|.+.| +|++.+.-
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999999999999 99988754
No 394
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=89.18 E-value=0.57 Score=39.68 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=28.8
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
++|||+|.-|+.+|..|+..| ++.+++.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 789999999999999999999 9999998864
No 395
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=89.18 E-value=0.54 Score=42.00 Aligned_cols=30 Identities=20% Similarity=0.063 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.++|||+|..|+-+|..|++.+ +|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 5899999999999999999999 99999974
No 396
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.99 E-value=0.68 Score=36.48 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
..-++|||.|.-|+.+|..|+..| ++.+++...-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 456899999999999999999999 8999987754
No 397
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.88 E-value=0.65 Score=41.01 Aligned_cols=32 Identities=13% Similarity=-0.006 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|||+|..|+-+|..|++.| +|.|+++...
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 6999999999999999999999 9999998864
No 398
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=88.87 E-value=0.7 Score=36.40 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
..-++|||.|.-|+.+|..|+..| ++.+++-..-
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 467999999999999999999999 8999987653
No 399
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.85 E-value=0.68 Score=42.04 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+-.+||+|.|.-|..+|.+|.+.+ +|+++|.-++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 356899999999999999999999 9999997654
No 400
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.77 E-value=0.68 Score=36.77 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=26.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
-++|||+|..|.--|..|.+.| +|.|+.-
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 5899999999999999999999 9988854
No 401
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.75 E-value=0.55 Score=41.28 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.|||.|.+|..+|.-|.+.| +|.+.|....
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 789999999999999999999 9999997653
No 402
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.66 E-value=0.51 Score=42.03 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|||+|..|+-+|..|++.. +|.++.++..
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 6999999999999999999988 9999998764
No 403
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=88.60 E-value=0.71 Score=37.53 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
++|||+|.-|+.++..|+..| ++.|++...-
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 789999999999999999999 8999887653
No 404
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=88.60 E-value=0.51 Score=42.44 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-----cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-----TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-----~VLvLEaG~ 38 (177)
-++-|||||.|++++|.-|.+++ +|-+||.-.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~ 39 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD 39 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC
Confidence 46889999999999999999865 899999754
No 405
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=88.54 E-value=0.61 Score=43.33 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
..-++|||+|.-||.+|..|+..| ++.+++.+.-
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence 467899999999999999999999 8999999864
No 406
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.41 E-value=0.72 Score=40.60 Aligned_cols=38 Identities=24% Similarity=0.074 Sum_probs=33.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS 41 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~ 41 (177)
...+|+|.||-|++-+.+|+-|.+.+ ++|+||+-+...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~ 42 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS 42 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC
Confidence 44699999999999999999999976 899999988654
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.14 E-value=0.76 Score=40.34 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-+.|||.|..|+.+|..|++.| +|.+++.-+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 3889999999999999999999 999988654
No 408
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=88.00 E-value=0.79 Score=36.91 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=28.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-c---EEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-T---VLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~---VLvLEaG~ 38 (177)
-.++|+|+|.+|..+|..|.+.| + |.|+++-+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46899999999999999999988 6 88888763
No 409
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.76 E-value=0.95 Score=38.58 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=24.9
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-cEEE
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLL 33 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLv 33 (177)
++.-.+.|||+|.-|+++|..|++++ .+++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g~v~l~ 35 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRGPTLQW 35 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 44567999999999999999999998 4433
No 410
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.64 E-value=0.82 Score=38.26 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.+.|||+|.-|..+|.+|+++| .|.+..+-.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4789999999999999999999 998887654
No 411
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.56 E-value=0.84 Score=39.86 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.++|||+|.-|..+|.+|.+.+ .|.++|+-+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4899999999999999999999 999998743
No 412
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.45 E-value=0.87 Score=39.38 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|..|+.+|..|+..| ++.|++...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457999999999999999999999 899998774
No 413
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=87.42 E-value=1 Score=34.78 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=27.9
Q ss_pred cccEEEECCCh-HHHHHHHHHHhCC-cEEEEecC
Q psy2463 6 LSLENIVGAGT-AGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~-aG~v~A~rLa~~g-~VLvLEaG 37 (177)
...++|||+|- .|..+|..|.+.+ +|.++.+-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 6999999999999 99888864
No 414
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=87.35 E-value=0.8 Score=39.95 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+.|||.|..|+.+|..|++.| +|.+.+.-.
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 789999999999999999999 999998754
No 415
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.27 E-value=0.85 Score=41.16 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-+-|||+|+-|.-+|..|+.+| .|.|.|.-
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3789999999999999999999 99988754
No 416
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.09 E-value=0.93 Score=39.56 Aligned_cols=33 Identities=36% Similarity=0.355 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-.+||||.|.-|..+|..|.+.+ .|+++|.-+.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 35899999999999999999999 9999987653
No 417
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.94 E-value=1.1 Score=35.68 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.5
Q ss_pred EEEEC-CChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+.||| +|.-|..+|.+|++++ +|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 7999999999999999 998887654
No 418
>PRK08223 hypothetical protein; Validated
Probab=86.93 E-value=0.95 Score=38.01 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
..-++|||.|--|+.+|..||..| ++.|++...-
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 467999999999999999999999 8999887754
No 419
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.80 E-value=0.96 Score=38.05 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
++|||+|.-|+-++..|+..| ++.|++-..-
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 789999999999999999999 8999887753
No 420
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.74 E-value=0.98 Score=37.63 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG 37 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG 37 (177)
-.++|||+|-+|..+|..|++.| +|.|+.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35899999999999999999988 78888764
No 421
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.66 E-value=1.3 Score=37.59 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 2 PTEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
.+-+..-+.|||+|..|..+|..|+..+ .|.|++.-+.
T Consensus 2 ~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 2 TMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3334456899999999999999999888 8999987544
No 422
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.50 E-value=0.92 Score=38.51 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
++|||+|.-|+-+|..|+..| ++.|++...-
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence 789999999999999999999 8999988753
No 423
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.43 E-value=1.4 Score=37.36 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAG 37 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG 37 (177)
..-+.|||+|..|+.+|..|+..+ .++|++.-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 357999999999999999999988 69999873
No 424
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.42 E-value=1.1 Score=38.84 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=28.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-+++|||+|..|..+|..|...| +|.+++.-
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 56999999999999999999999 99999864
No 425
>KOG2495|consensus
Probab=86.39 E-value=0.38 Score=42.60 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHh--------------CC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSL--------------HH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~--------------~g-~VLvLEaG~~~ 40 (177)
--+||||||+.|.-.|++|+. .- +|.||||.+..
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 457999999999999999984 11 89999999853
No 426
>KOG2018|consensus
Probab=86.34 E-value=0.85 Score=39.01 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
.=+||||+|--|+-+++-|.++| ++.+++--.
T Consensus 75 syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 75 SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred cEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 34789999999999999999999 898887654
No 427
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.32 E-value=1.1 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
+.|||+|..|.++|..|++.+ .|.|++.-.
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 789999999999999999988 689998744
No 428
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.30 E-value=1.1 Score=37.66 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=26.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEA 36 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa 36 (177)
-+.|||+|.-|+.+|.-|+..+ .|++++.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3789999999999999999987 7999998
No 429
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.30 E-value=1.1 Score=36.38 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
..-++|||.|.-|+.+|..|+..| ++.|++.-.-
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 467999999999999999999999 8888887653
No 430
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.17 E-value=0.97 Score=42.52 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-+.|||+|+.|+-+|..+|.+| .|.|+|.-
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 3789999999999999999999 99999854
No 431
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.13 E-value=1.2 Score=37.50 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
.+.|||+|..|+.+|..|+..+ .|+|++.-.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 3789999999999999999988 699999754
No 432
>PRK12831 putative oxidoreductase; Provisional
Probab=86.10 E-value=1.1 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
.++|||+|..|.-+|..|++.| +|.|+++...
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 7999999999999999999999 9999987654
No 433
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.04 E-value=0.99 Score=42.46 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-+.|||+|+.|.-+|..+|.+| .|.|+|.-.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 3789999999999999999999 999988654
No 434
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.94 E-value=1.6 Score=29.40 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.7
Q ss_pred ccEEEECCChHHHHHHHHHHhC-C-cEEEEec
Q psy2463 7 SLENIVGAGTAGCVLANRLSLH-H-TVLLIEA 36 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEa 36 (177)
-.++|+|+|..|..+|..|.+. + +|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3689999999999999999998 4 8888877
No 435
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.88 E-value=1.3 Score=39.91 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-+-|||+|.-|.-+|..|+.+| .|.|.+.-
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~ 39 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDAR 39 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4789999999999999999999 99887743
No 436
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.72 E-value=1.6 Score=32.42 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.7
Q ss_pred cEEEECC-ChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463 8 LENIVGA-GTAGCVLANRLSLHH---TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~-G~aG~v~A~rLa~~g---~VLvLEaG~~ 39 (177)
.+.|||+ |.-|..+|..|...+ .+.|++.-..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 3789999 999999999999988 6888887643
No 437
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.67 E-value=1.2 Score=38.28 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|..|+.+|..|+..| ++.|++...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467999999999999999999999 899998875
No 438
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.67 E-value=1.2 Score=38.66 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|..|+.+|..|+..| ++.+++...
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 467999999999999999999999 899998874
No 439
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.59 E-value=1.4 Score=36.83 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCCccccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463 1 MPTEYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAG 37 (177)
Q Consensus 1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG 37 (177)
|+....-.+.|||.|..|..+|..|.+.+ +|.+.+.-
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 55544456999999999999999999887 67777764
No 440
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=85.24 E-value=1.3 Score=38.95 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
-.++|||+|..|.-+|..|++.+ +|.|+++...
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 36999999999999999999887 7999998643
No 441
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.23 E-value=1.2 Score=39.90 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=27.3
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+-|||+|.-|..+|.+|+.+| +|.|.+.-+
T Consensus 7 IavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 7 AACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 789999999999999999999 999988643
No 442
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=84.90 E-value=1.3 Score=38.68 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|--|+.+|..|+..| ++.|++-..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 467999999999999999999999 899988775
No 443
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.89 E-value=1.4 Score=36.82 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.-++|||.|..|..+|.+|...| +|.+.++-.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999999 999988754
No 444
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.84 E-value=1.3 Score=38.73 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-++|+|+|..|..+|..|++.| +|++.+...
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3799999999999999999999 999988654
No 445
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=84.75 E-value=1.2 Score=40.52 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.|+|||+|.+|+=+|.+|++.. +|.+.=+.+
T Consensus 185 rVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 185 RVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp EEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred EEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 6999999999999999999988 887766554
No 446
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=84.55 E-value=1.6 Score=36.43 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-c-EEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG 37 (177)
-++|+|+|-+|..+|..|++.| + |.|+.+-
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5799999999999999999999 4 9888764
No 447
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.36 E-value=1.4 Score=39.44 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
.+.|||.|..|+++|..||+.| +|+.+|.-.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 3889999999999999999984 798888654
No 448
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.23 E-value=1.4 Score=36.28 Aligned_cols=29 Identities=31% Similarity=0.248 Sum_probs=26.7
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
+.|||.|.-|..+|..|++.| +|++.+.-
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 789999999999999999999 99998864
No 449
>PRK07411 hypothetical protein; Validated
Probab=84.14 E-value=1.4 Score=38.37 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
..-++|||.|.-|+.+|..|+..| ++.|++...
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 467999999999999999999999 899988875
No 450
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.79 E-value=1.7 Score=38.37 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
-.++|+|.|+-|..+|.+|...| +|+++|.-+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 36899999999999999999999 9999987543
No 451
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.60 E-value=1.4 Score=41.62 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-+-|||+|+-|+-+|..++.+| .|.|+|.-.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 3789999999999999999999 999998643
No 452
>PRK08017 oxidoreductase; Provisional
Probab=83.55 E-value=1.9 Score=34.13 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=26.1
Q ss_pred EEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
++|+|+ |.-|..+|.+|++.| +|+++.+-
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 899998 999999999999999 99888654
No 453
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.53 E-value=1 Score=37.82 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
....++|||.|--|+-+|..|+..| ++.|++-..-
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v 54 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC 54 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence 3578999999999999999999999 8999887753
No 454
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.45 E-value=1.9 Score=35.97 Aligned_cols=29 Identities=38% Similarity=0.622 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEA 36 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa 36 (177)
-+.|||+|.-|..+|..|+..+ .|.|++.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 4789999999999999999977 7999987
No 455
>KOG2403|consensus
Probab=83.37 E-value=1.1 Score=40.96 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=27.8
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
..||.+|||+|-||+-.|..|+|.+ +|.++-.
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itk 86 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITK 86 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEec
Confidence 3599999999999999999999999 7766543
No 456
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.33 E-value=2.4 Score=33.32 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=29.0
Q ss_pred CCCCccccEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 1 MPTEYLSLENIVGA-GTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 1 ~~~~~~~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
|..+..--++|.|+ |.-|..+|.+|++.| +|.++.+-
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 44444445788885 888999999999999 99998764
No 457
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.25 E-value=1.6 Score=40.36 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+-.+||+|.|.-|..+|..|.+.+ +|++||.-++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 357999999999999999999999 9999998764
No 458
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=83.15 E-value=2.2 Score=32.13 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=27.1
Q ss_pred EEEECC-ChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
++|+|+ |..|..++.+|.+.+ +|.++=+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 689996 999999999999999 8888777654
No 459
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=83.13 E-value=1.9 Score=35.84 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=27.0
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG 37 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG 37 (177)
-.++|||+|-++..+|..|++.| +|.|+-+-
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999998 78887653
No 460
>PRK07326 short chain dehydrogenase; Provisional
Probab=82.77 E-value=2 Score=33.55 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=25.4
Q ss_pred cEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-++|+|+ |.-|..+|.+|++.| +|+++-+-
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 4778875 999999999999999 99888654
No 461
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.74 E-value=2.7 Score=32.97 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=26.6
Q ss_pred cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-++|.|+ |..|..+|.+|++.| +|+++.+..
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRGARVVAAARNA 43 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788887 799999999999999 999887643
No 462
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.65 E-value=1.8 Score=39.38 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=26.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA 36 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa 36 (177)
-++|+|+|-+|..+|..|++.| +|.++.+
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR 410 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANR 410 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 4799999999999999999999 9988865
No 463
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.32 E-value=2.4 Score=31.98 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.7
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.+-+||-|..|..+|.+|.++| +|.+-++-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 3678999999999999999999 99988755
No 464
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=82.28 E-value=1.8 Score=36.73 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+-|||+|.-|.-+|..+|..| .|.+.+.-.
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 679999999999999999987 999988763
No 465
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.27 E-value=2.1 Score=35.07 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
.++|+|+|-+|..+|..|++.+ +|.++.+-
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999999999999 89888654
No 466
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.20 E-value=2.2 Score=36.08 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.9
Q ss_pred EEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAG 37 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG 37 (177)
+.|||+|.-|..+|..|+..+ .++|++.=
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 689999999999999999887 68999863
No 467
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=82.18 E-value=2.2 Score=37.64 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=30.1
Q ss_pred ccccEEEECCChHHHHHHHHHHhCC----cEEEEecCCC
Q psy2463 5 YLSLENIVGAGTAGCVLANRLSLHH----TVLLIEAGDF 39 (177)
Q Consensus 5 ~~~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~ 39 (177)
.+.-++|.|+|+||+.+|..|...+ +|.++++-+-
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 3567899999999999999999987 6999988653
No 468
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.65 E-value=2.8 Score=31.84 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=27.8
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
.-++|+|+|..|.-+|.-|..-| +|.++|.-.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 46899999999999999999999 999988754
No 469
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=81.64 E-value=2.3 Score=35.82 Aligned_cols=32 Identities=31% Similarity=0.241 Sum_probs=25.9
Q ss_pred EEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP 40 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~ 40 (177)
++|||+|.+|..+|.+|.+.. .|.++......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 589999999999999988843 77777776543
No 470
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=81.52 E-value=2.2 Score=40.19 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~ 39 (177)
.++|||+|..|.-+|..|.+.| + |.|+++...
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 6899999999999999999988 5 999998754
No 471
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=81.49 E-value=1.9 Score=35.59 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
+-|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 679999999999999999999 999887654
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.45 E-value=2.5 Score=32.66 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.6
Q ss_pred ccEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463 7 SLENIVGA-GTAGCVLANRLSLHH-TVLLIEAG 37 (177)
Q Consensus 7 ~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG 37 (177)
-.++|+|+ |..|..+|..|++.+ +|.++-+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899996 999999999999999 88888543
No 473
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.43 E-value=2 Score=40.44 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHH-hCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLS-LHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~ 38 (177)
-+.|||+|+.|+-+|..++ ..| .|.|.|.-.
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4789999999999999999 778 999988743
No 474
>PRK06153 hypothetical protein; Provisional
Probab=81.41 E-value=1.9 Score=37.81 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~ 40 (177)
..-+.|||.|-.|+.+|..||+.| ++.|++...-.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve 212 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFL 212 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEec
Confidence 357899999999999999999999 89998877543
No 475
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=81.27 E-value=2.1 Score=34.33 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=24.2
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLI 34 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvL 34 (177)
+.|+|.|--|..+|.||+..+ .|.+-
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~ig 30 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIG 30 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEe
Confidence 689999999999999999999 88886
No 476
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.27 E-value=2.1 Score=35.71 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=27.0
Q ss_pred EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
+.|||+|..|..+|..|+..+ .|.|++.-..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 469999999999999999877 8999988653
No 477
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=81.15 E-value=2.4 Score=35.36 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG 37 (177)
-++|+|+|-++..+|..|++.| +|.|+.+-
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 5899999999999999999988 78888653
No 478
>KOG2852|consensus
Probab=81.07 E-value=0.84 Score=38.76 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=29.2
Q ss_pred CccccEEEECCChHHHHHHHHHHhCC-------cEEEEecC
Q psy2463 4 EYLSLENIVGAGTAGCVLANRLSLHH-------TVLLIEAG 37 (177)
Q Consensus 4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-------~VLvLEaG 37 (177)
.+.-.++|||+|..|+-.|.-|++.+ .|.++|.-
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 44567999999999999999999975 68999974
No 479
>PLN02602 lactate dehydrogenase
Probab=80.81 E-value=3 Score=35.97 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=28.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
.-+.|||+|.-|..+|..|+..+ .++|++.-.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 57899999999999999999887 689998743
No 480
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=80.77 E-value=3.2 Score=29.72 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=22.6
Q ss_pred EEEEC-CChHHHHHHHHHHhCC--cEEEEec
Q psy2463 9 ENIVG-AGTAGCVLANRLSLHH--TVLLIEA 36 (177)
Q Consensus 9 ~IVVG-~G~aG~v~A~rLa~~g--~VLvLEa 36 (177)
+.||| +|..|..+...|++.+ .++.|-.
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~ 32 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVS 32 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeee
Confidence 67999 9999999999999987 5444433
No 481
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=80.71 E-value=2.4 Score=34.25 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.0
Q ss_pred cEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH-TVLLI 34 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g-~VLvL 34 (177)
.++|||||..+.-=+..|.+.+ +|.|+
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVV 54 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYIL 54 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4999999999999889999988 88776
No 482
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.71 E-value=2.6 Score=35.66 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.6
Q ss_pred ccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
.-+.|||+|.-|..+|..|+..+ .++|++.=.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45899999999999999999887 689998643
No 483
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=1.6 Score=38.14 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
-|+-|||+|.+|.-+|.-||--- .|.|||-.+..
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL 389 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL 389 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeecchhh
Confidence 58999999999999999999766 99999988764
No 484
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=80.47 E-value=3 Score=33.88 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEEC-CChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463 9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGDFP 40 (177)
Q Consensus 9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~~~ 40 (177)
++|.| +|.-|..++.+|.+.| .|..+.+....
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~ 36 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDG 36 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 78999 5999999999999999 99999987653
No 485
>PRK08177 short chain dehydrogenase; Provisional
Probab=80.30 E-value=3.3 Score=32.36 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=26.3
Q ss_pred EEEEC-CChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
++|+| +|.-|..+|.+|++.| +|+++.+.+.
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 67777 6778899999999999 9999987654
No 486
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.15 E-value=2.5 Score=37.15 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+.|||+|.-|++.|.-||+.| .|+.++--+.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 679999999999999999999 9999887653
No 487
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=80.06 E-value=2.5 Score=39.74 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHH-hCC-cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLS-LHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~ 38 (177)
-+.|||+|+-|+-+|..+| ..| .|.|+|.-+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3789999999999999998 478 999988754
No 488
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.99 E-value=3 Score=33.17 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.7
Q ss_pred cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-++|+|+ |.-|..+|.+|++.| +|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4789998 888999999999999 998886643
No 489
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.89 E-value=2.6 Score=38.82 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
+-.+||+|.|.-|..+|..|.+.+ +|++||.-+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS 434 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence 356999999999999999999999 9999997654
No 490
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=79.73 E-value=2.5 Score=35.43 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=26.1
Q ss_pred EEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~ 38 (177)
+.|||+|..|+.+|..|+..+ .++|++.=.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~ 33 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 479999999999999999988 699998743
No 491
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.71 E-value=3 Score=34.90 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=29.0
Q ss_pred cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
...++|||.|..|..+|.+|...| +|.+.++-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 357899999999999999999999 999987653
No 492
>PRK06841 short chain dehydrogenase; Provisional
Probab=79.46 E-value=3.2 Score=32.83 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
++|+|+ |.-|..+|.+|++.| +|+++.+..
T Consensus 18 vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 18 AVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788885 889999999999999 999887653
No 493
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.31 E-value=3.2 Score=34.46 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
.++|+|+|-++..++..|++.+ +|.|+-+-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 5899999999999999999988 688886643
No 494
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=79.28 E-value=4.6 Score=27.20 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=24.5
Q ss_pred EEEECCChHHHHHHHHHHhCC----cEEEE-ecCC
Q psy2463 9 ENIVGAGTAGCVLANRLSLHH----TVLLI-EAGD 38 (177)
Q Consensus 9 ~IVVG~G~aG~v~A~rLa~~g----~VLvL-EaG~ 38 (177)
+.|||+|.-|..++..|.+.+ +|+++ ++-+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 568999999999999999986 67755 5544
No 495
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=79.22 E-value=3.3 Score=34.65 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=26.8
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG 37 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG 37 (177)
.++|+|+|-++..+|..|++.| +|.|+.+-
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5899999999999999999988 88888774
No 496
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.22 E-value=3.1 Score=34.32 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=27.7
Q ss_pred ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD 38 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~ 38 (177)
-.++|+|+|-+|..+|..|++.| +|.|+-+-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 35899999999999999999988 788886643
No 497
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=79.14 E-value=3 Score=38.80 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463 8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF 39 (177)
Q Consensus 8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~ 39 (177)
.++|||+|..|.-+|..|.+.| +|.||++...
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 6899999999999999999888 6999987753
No 498
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.11 E-value=3 Score=36.76 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463 7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF 39 (177)
Q Consensus 7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~ 39 (177)
--++|||.|.-|..+|.+|...| +|+++|.-+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 36899999999999999999889 9999987653
No 499
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.92 E-value=3.5 Score=32.34 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=26.7
Q ss_pred cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-++|+|+ |.-|..+|.+|++.| +|+++.+..
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789997 999999999999999 998886543
No 500
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.67 E-value=4.4 Score=31.85 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=27.1
Q ss_pred cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463 8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD 38 (177)
Q Consensus 8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~ 38 (177)
-++|.|+ |--|..+|..|++.| +|+++.+-.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899997 899999999999999 999987643
Done!