RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2463
(177 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 93.4 bits (233), Expect = 1e-22
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
I+GAG+AGCVLANRLS +VLL+EAG D+ F+ +P L P+ Q ++W YE
Sbjct: 10 IIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPL-QGKRYNWAYE 68
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
T P+ + + N PRGKVLGGS IN + + G D++ W
Sbjct: 69 TEPEPH----MNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWA 111
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 89.1 bits (221), Expect = 3e-21
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAG-DFPSFWSNIPLTSPILQRSE-HDWQYETAPQ 67
IVG+G+AG VLA RLS +VL++EAG +P L +DW + T P+
Sbjct: 12 IVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPE 71
Query: 68 ANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGP 111
L+ WPRGKVLGGS IN + + G PEDF+AW
Sbjct: 72 P----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQ 111
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 68.8 bits (168), Expect = 4e-14
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
I+G G+AG VLA RLS + ++VL++EAG D+P +P L P ++W YE
Sbjct: 4 IIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYP-AGNKRYNWIYE 62
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
T P+ + + N RGKVLGGS IN + + G P D+E W
Sbjct: 63 TEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKW 104
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 64.1 bits (156), Expect = 2e-12
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNIP------LTSPILQRSEHDWQY 62
+VG G+AGCV+A RLS TV ++EAG S +P L PI S W+Y
Sbjct: 5 VVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVVWRY 64
Query: 63 ETA----PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWFDYGN 117
P+ S+ RG+VLGGSG +N P DF+AW P + + +
Sbjct: 65 GVELTDGPRRASA---------IVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDD 115
Query: 118 V 118
V
Sbjct: 116 V 116
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 49.0 bits (117), Expect = 3e-07
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
+VG GTAGC LA LS + +VLL+E G P +N+ + H +T+P + S
Sbjct: 60 VVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFL-----ENFHIGLADTSPTSAS 114
Query: 71 SGGLKNNVSFWPRGKVLGGSGQIN 94
+ + R +VLGG IN
Sbjct: 115 QAFISTDGVINARARVLGGGTCIN 138
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.5 bits (83), Expect = 0.001
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
IVGAG +G V A L+ VL++E D
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 35.4 bits (82), Expect = 0.008
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPS 41
++G G G A L+ +V L+E GD S
Sbjct: 4 VIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 35.9 bits (84), Expect = 0.008
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDF 39
++GAG AG LA R + L V LIE G
Sbjct: 10 VIGAGQAGPPLAARAAGLGMKVALIERGLL 39
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 34.7 bits (80), Expect = 0.018
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
IVGAG AG A RL+ VL++E G P
Sbjct: 8 IVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 34.2 bits (79), Expect = 0.020
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VGAG AG A RL+ VLL+E FP
Sbjct: 5 VVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 33.4 bits (77), Expect = 0.033
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 70 SSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
S+G + P G +GG +N + W
Sbjct: 10 SAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEW 49
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 33.5 bits (77), Expect = 0.044
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEA 36
IVGAG AG LA L+ V L+E
Sbjct: 7 IVGAGPAGLALALALARAGLDVTLLER 33
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 33.1 bits (76), Expect = 0.056
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEA 36
IVGAG +G V+A + VL++E
Sbjct: 6 IVGAGLSGAVIAEVAAQLGKRVLIVEK 32
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 31.9 bits (73), Expect = 0.16
Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 11 IVGAGTAGCVLANRLSLHHT---VLLIEAGDFPSF-----WS--NIPLTSPILQRSEHDW 60
IVGAG AG +LA RL VLLI+AG P F WS L P+ EH W
Sbjct: 4 IVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLG-PLAPCVEHSW 62
Query: 61 Q 61
Sbjct: 63 P 63
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 31.7 bits (73), Expect = 0.16
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDF 39
++GAG AG V A R + V LIE G
Sbjct: 8 VIGAGPAGYVAARRAAKLGKKVALIEKGPL 37
>gnl|CDD|184819 PRK14784, PRK14784, lipoprotein signal peptidase; Provisional.
Length = 160
Score = 30.6 bits (69), Expect = 0.22
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSF 42
++ AGT G L +R+ L + I GDFP+F
Sbjct: 98 VILAGTVGN-LIDRVRLGYVTDFIRVGDFPTF 128
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 31.2 bits (71), Expect = 0.22
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
I+G G AG A RL+ L V LIE + L +L +
Sbjct: 4 IIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRG-CLPKKLLLEVAEGLELAIGLALP 62
Query: 70 SSGGLKNNVSFWPRGKVLG---GSGQINLLNHYDGRPEDFEA 108
+ V +V+ G + L + GR ++
Sbjct: 63 EEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDK 104
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 30.8 bits (70), Expect = 0.31
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIE 35
I+G G AG LA L+ V+ I+
Sbjct: 6 IIGLGPAGSALARLLAGKMKVIAID 30
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 30.9 bits (70), Expect = 0.35
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSLHH-TVLLIE 35
IVGAG +G VLAN L+ + VL++E
Sbjct: 6 IVGAGLSGIVLANILAQLNKRVLVVE 31
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 30.6 bits (70), Expect = 0.39
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 11 IVGAGTAGCVLANRLSLHHT--VLLIEAGDFPS 41
IVG G G LA L+ V LIEA P+
Sbjct: 4 IVGGGPVGLALALALARSGGLKVALIEATPLPA 36
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.3 bits (69), Expect = 0.43
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 18/75 (24%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP---SFWS----NIPLT--------SPILQ 54
++G+G AG A + V ++E G + WS + T SP L
Sbjct: 4 VIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLH 63
Query: 55 RSEHDWQYETAPQAN 69
D A+
Sbjct: 64 P--TDTLKGLDELAD 76
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 30.7 bits (70), Expect = 0.43
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFP---SFWS 44
I+G+G AG A L+ V ++ G S+W+
Sbjct: 12 IIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWA 48
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 30.2 bits (68), Expect = 0.51
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGD 38
++G+G +G A LS H V L EA
Sbjct: 13 VIGSGISGLSAAWLLSRRHDVTLFEADR 40
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 30.3 bits (68), Expect = 0.53
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPS 41
I+G G G A L+ V ++EAG+
Sbjct: 9 IIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 30.3 bits (69), Expect = 0.53
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
++GAG AG V A R + L V L+E G+
Sbjct: 9 VIGAGPAGYVAAIRAAQLGLKVALVEKGE 37
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 30.2 bits (69), Expect = 0.55
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
IVG G AG A RL+ H V + EA D
Sbjct: 4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 29.7 bits (67), Expect = 0.88
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 11 IVGAGTAG----CVLANRLSLHH-TVLLIEAGDFPSFWSNIPLTSP 51
IVG G G L N VLL++A D P S
Sbjct: 5 IVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPD 50
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 29.5 bits (67), Expect = 1.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFP---SFW 43
I+G+G AG LA RL+ H V ++ G +F+
Sbjct: 13 IIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFY 48
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 29.1 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIE 35
IVGAG G LAN L + VL++E
Sbjct: 15 IVGAGPVGLTLANLLGQYGVRVLVLE 40
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 29.2 bits (66), Expect = 1.2
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSL-HHTVLLIEAGDFPS 41
++G G G +A + V L+E GD S
Sbjct: 17 VIGGGITGAGIARDAAGRGLKVALVEKGDLAS 48
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.8 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 11 IVGAGTAGCVLANRLSLH----HTVLLIEAGDFP 40
IVG GTAG + A L+ V L+E+ +
Sbjct: 4 IVGGGTAGWMAAAALARALKGGLDVTLVESEEIG 37
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 28.7 bits (64), Expect = 1.9
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIE 35
IVG AG VLA LS VL++E
Sbjct: 38 IVGGSIAGPVLAKALSKQGRKVLMLE 63
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 28.4 bits (63), Expect = 2.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 131 KTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKL 172
K++VGN++ + + LS +TPG + I +V L +L
Sbjct: 666 KSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLPSLKQL 707
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 28.1 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAGD 38
+VGAG +G A L+ H VL+ EA D
Sbjct: 17 VVGAGVSGLAAAYALASKHGVNVLVTEARD 46
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.2 bits (63), Expect = 3.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
++GAG G A L+ V ++E D
Sbjct: 8 VIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 28.0 bits (63), Expect = 3.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 IVGAGTAGCVLANRLSLHHT-VLLIEAGDFPSF 42
IVG G G LA L +L+E D +F
Sbjct: 12 IVGGGPVGLALALDLGRRGVDSILVERKDGTAF 44
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 27.7 bits (62), Expect = 3.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQ 54
EYL + + + CV AN +SL ++ + G+ + NIPL S I+Q
Sbjct: 14 EYLLVPGLS---SKECVPAN-VSLKTPLVKFKKGEESAITLNIPLVSAIMQ 60
>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2.
Length = 581
Score = 27.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 137 NVEDFPVRVSLSDTATPGLTSTIPAIV 163
+V D+PV V+L D TP L S + +V
Sbjct: 187 DVSDYPVVVTLEDHLTPDLQSKVAEMV 213
>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 27.3 bits (61), Expect = 5.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLI 34
I+GAG G +L RL+ + +
Sbjct: 5 ILGAGAIGSLLGARLAKAGHDVTL 28
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 27.1 bits (61), Expect = 5.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEA 36
++GAG AG A+RL+ + V + EA
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIFEA 171
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 27.0 bits (60), Expect = 6.2
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD---FPSFWS 44
++G G AG +A L+ V LIE +
Sbjct: 4 VIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYG 41
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 26.8 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIE 35
I+GAG G +A LS H V+LI+
Sbjct: 5 IIGAGRVGRSVARELSEEGHNVVLID 30
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 27.0 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
IVGAG AG A L + V ++EA D
Sbjct: 12 IVGAGLAGLSAAYELKKAGYQVQILEARD 40
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 27.1 bits (61), Expect = 6.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 IVGAGTAGCVLANRLS 26
I+G G AG LA L+
Sbjct: 265 IIGGGIAGAALALALA 280
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 26.8 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 11 IVGAGTAGCVLANRLSLHHT---VLLIEAG 37
IVG G AG ++A RL + +IEAG
Sbjct: 4 IVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form.
Sarcosine oxidase catalyzes the oxidative demethylation
of sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate.
The enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism,
Amino acids and amines].
Length = 380
Score = 26.7 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VGAG GC A L+ H LL+E D P
Sbjct: 5 VVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 26.4 bits (58), Expect = 8.8
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VGAG G A + V LIEA D
Sbjct: 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 26.0 bits (58), Expect = 8.9
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 20/70 (28%)
Query: 11 IVGAGTAGCVLANRLSLHHT-----VLLIEAGDF-----------PSFWSNIP--LTSPI 52
I+GAG G + RL + + + P N P S
Sbjct: 2 IIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQLLLNTPAAQMSLF 61
Query: 53 LQRSEH--DW 60
+W
Sbjct: 62 PDDPPSFLEW 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.137 0.433
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,113,563
Number of extensions: 814442
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 58
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)