RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2463
(177 letters)
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 124 bits (315), Expect = 4e-34
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
IVG GT+GC LA LS + VL++E G P+ + N+ + + + +T +
Sbjct: 31 IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER-- 88
Query: 71 SGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGP-WFDYGNV 118
+ + RG+VLGG+ IN + + A G W D V
Sbjct: 89 --FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDW-DMDLV 134
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 123 bits (310), Expect = 2e-33
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQR-SEHDWQYETA 65
+VGAG AG V+A RL+ +VL++EAG D + PL +P L S DW Y T
Sbjct: 7 VVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTT 66
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
QA G +PRG++LGGS ++ + G EDF+ +
Sbjct: 67 AQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRY 106
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 121 bits (306), Expect = 9e-33
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDF---PSFWSNIPLTSPILQRSEHDWQYETA 65
I G G G +A +L+ VL+IE G + P + + D Y T
Sbjct: 29 IAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTV 88
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYD-GRPEDFEAW 109
P N N + GK LGGS IN + ++W
Sbjct: 89 PLIN------NRTNNIKAGKGLGGSTLINGD-SWTRPDKVQIDSW 126
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 117 bits (296), Expect = 2e-31
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFP---SFWSNIPLTSPILQRSEHDWQYETA 65
I G G G A RL+ + +VL+IE+G + + S D YET
Sbjct: 24 IAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETV 83
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYD-GRPEDFEAW 109
N + G LGGS +N + ++W
Sbjct: 84 EL-----ATNNQTALIRSGNGLGGSTLVNGG-TWTRPHKAQVDSW 122
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 116 bits (294), Expect = 3e-31
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
IVG G+AG +LA RLS VLLIEAG P P LQ +DW Y T
Sbjct: 22 IVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYRTEA 80
Query: 67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
QA G W RG+++GGS ++ + + G P DF+AW
Sbjct: 81 QA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAW 119
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 114 bits (288), Expect = 3e-30
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDF---PSFWSNIPLTSPILQRSEHDWQYETA 65
IVG GTAG +A RL+ + TVL++EAG P ++ L+ S++DW Y+T
Sbjct: 11 IVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT 70
Query: 66 PQANSSGGLKNNVSFWP--RGKVLGGSGQINLLNHYDGRPEDFEAW 109
P RGK LGGS +N G F+ W
Sbjct: 71 MVR----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQW 112
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 111 bits (280), Expect = 2e-29
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFPSFWSNIPL-TSPILQRSEHDWQYETA 65
+VG G+AG +A RLS +V L+EAG D + L L S +DW Y
Sbjct: 18 VVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR-GVPEVLQLDRWMELLESGYDWDYPIE 76
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
PQ N N+ R KV+GG N + ED + W
Sbjct: 77 PQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEW 115
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 101 bits (255), Expect = 7e-26
Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAG--DFPSFWSNIP----LTSPILQRSEH---DW 60
IVGAG G + A+RLS VLL+E G TS L + +
Sbjct: 12 IVGAGPGGIIAADRLSEAGKKVLLLERGGPST-KQTGGTYVAPWATSSGLTKFDIPGLFE 70
Query: 61 QYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPW-FDYGNV 118
T G ++GG +N ++ DF + W + N
Sbjct: 71 SLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNH 125
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 60.8 bits (147), Expect = 2e-11
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 21/126 (16%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAG-----------DFPSFWSNIPLTSPILQRSEH 58
++G G V A RL L++E G F + +S R+E
Sbjct: 10 VIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEA 69
Query: 59 D-----WQYETAPQANSSGGLKNNVSF----WPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
W + G+ + V++ G+ +GG +N + + FE
Sbjct: 70 PLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI 129
Query: 110 GPWFDY 115
P D
Sbjct: 130 LPRVDS 135
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 53.6 bits (128), Expect = 4e-09
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 20/125 (16%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAG-----------DFP--------SFWSNIPLTS 50
++G+G G V A RL+ ++E G F S W
Sbjct: 16 VIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQ 75
Query: 51 PILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
P+ + + +G+ +GG +N + FE
Sbjct: 76 PVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL 135
Query: 111 PWFDY 115
P D
Sbjct: 136 PSVDS 140
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 43.6 bits (103), Expect = 1e-05
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSF 42
++GAG AG V A+ ++ V ++E FP F
Sbjct: 10 VIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF 42
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 43.4 bits (102), Expect = 1e-05
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSF 42
++G G G LA+ +++ H VLL+E FP
Sbjct: 12 VIGGGPGGSTLASFVAMRGHRVLLLEREAFPRH 44
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 41.1 bits (96), Expect = 9e-05
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSF 42
I+G G AG V L H V + E FP +
Sbjct: 28 IIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY 60
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 56/156 (35%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA- 68
IVG+G GC A L + V + + G+ S ++ ++ ++ Q
Sbjct: 51 IVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQ 110
Query: 69 --------------------------------NSSGGLKNNVSFWPRGKVLGGSGQINLL 96
N N+S +V+GG
Sbjct: 111 LMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMS----- 165
Query: 97 NHYDG-----RPEDFEA------------WGPWFDY 115
+ E W +
Sbjct: 166 TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTK 201
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 39.8 bits (93), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
I+G G AG A +LS +LL+++ +
Sbjct: 11 IIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGD 45
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 37.8 bits (87), Expect = 9e-04
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
IVGAG AG VLA RL+ VL+++
Sbjct: 34 IVGAGFAGSVLAERLASSGQRVLIVDRRP 62
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 37.3 bits (86), Expect = 0.001
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
IVGAG +G V+ +L+ H V +I+ D
Sbjct: 8 IVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 36.6 bits (84), Expect = 0.002
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
IVG+G G V AN L VL+IE +
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRN 34
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 36.2 bits (84), Expect = 0.003
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VG G G A + + L+IE
Sbjct: 9 VVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 36.3 bits (83), Expect = 0.003
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFP 40
+VG+G G +A R++ VL++E
Sbjct: 12 VVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 36.2 bits (82), Expect = 0.003
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 11 IVGAGTAGCV----LANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQ 54
IVG GTAG + L L + LIE+ P + +
Sbjct: 10 IVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQK 57
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 35.6 bits (81), Expect = 0.007
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFP 40
++GAG G A RL+ + +++++ + P
Sbjct: 15 VIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 35.5 bits (80), Expect = 0.007
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 11 IVGAGTAGCV----LANRLSLHHTVLLIEAGDFPSFWSNIPLTSPI-------LQRSEHD 59
IVG GTAG + L L + L++A D P+ + L E +
Sbjct: 30 IVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDE 89
Query: 60 WQYET 64
W E
Sbjct: 90 WMREC 94
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.0 bits (79), Expect = 0.008
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
I+G G AG A L+ H V L +
Sbjct: 7 IIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 34.5 bits (80), Expect = 0.013
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
I G G G +LA L H V+++E +
Sbjct: 11 INGCGIGGAMLAYLLGRQGHRVVVVEQARRERAIN 45
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 33.5 bits (75), Expect = 0.028
Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 30/123 (24%)
Query: 11 IVGAGTAGCVLANRLSLHH-------------TVLLIEAGDFPSFWSNIPLTSPI----- 52
IVG GTAG + A L+ H + LIE+ D + +
Sbjct: 12 IVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTLS 71
Query: 53 -LQRSEHDWQYETAPQANSSGGLKNNVSF--WPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
+ E+D+ + K F W + + H P +
Sbjct: 72 KIGIDENDFIRQC------DASFKQGSRFINWCKDPQSNVADSY---LHPFSLPHGHQEL 122
Query: 110 GPW 112
Sbjct: 123 DLC 125
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 33.3 bits (75), Expect = 0.030
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 1 MPTEYLSLENIVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHD 59
M EY + ++G G C+L+ +S++ VL ++ + S+ + L+
Sbjct: 3 MDEEYDVI--VLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESS---SITPLEELYKR 57
Query: 60 WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQ-INLLNHYD-GRPEDFEAWGPWFDYGN 117
+Q P G NV P K L +GQ + +L + + R DF+ F Y
Sbjct: 58 FQLLEGPPETMGRGRDWNVDLIP--KFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKG 115
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 33.1 bits (74), Expect = 0.043
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 11 IVGAGTAGCV----LANRLSLHHTVLLIEAGDFP------SFWSNIPLTSPILQRSEHDW 60
IVG GTAG + L V L+E+G+ + +S + L E +W
Sbjct: 7 IVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDEREW 66
Query: 61 QYET 64
Sbjct: 67 LPRC 70
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 32.7 bits (73), Expect = 0.048
Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 11/114 (9%)
Query: 11 IVGAGTAGCVLANRLSL---HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHD--WQYETA 65
++GAG G A L ++LL+E G P+ L + + + +
Sbjct: 41 VIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAE 100
Query: 66 PQAN-----SSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFD 114
G V P +L L D DF D
Sbjct: 101 WTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDAL-ADFPEALALLD 153
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 32.9 bits (74), Expect = 0.049
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFP 40
I+GAG G A RL+ + L E D P
Sbjct: 14 IIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 32.5 bits (74), Expect = 0.050
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGD 38
I+GAG AG L H ++E D
Sbjct: 11 IIGAGPAGLAAGMYLEQAGFHDYTILERTD 40
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 32.4 bits (74), Expect = 0.058
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 11 IVGAGTAGCVLANRLSLH---HTVLLIEAGD 38
+VG GT G A + L V LIE
Sbjct: 7 VVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 32.5 bits (73), Expect = 0.060
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 1 MPTEYLSLENIVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHD 59
+ T+Y + ++G G C+L+ LS+ VL I+ D + S + ++ + +
Sbjct: 8 IDTDYDVI--VLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQN 65
Query: 60 WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYD-GRPEDFEAWGPWFDY--G 116
+ ++ NV P+ ++ N+L H D R DF+ + + G
Sbjct: 66 PISKEERESKFGKDRDWNVDLIPK-FLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQG 124
Query: 117 NVSKV 121
+ KV
Sbjct: 125 KIYKV 129
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 32.2 bits (74), Expect = 0.072
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFP---SFW 43
I+G+G AG LA RL+ H V+++ G +F+
Sbjct: 13 IIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFY 48
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 32.3 bits (73), Expect = 0.072
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
+VG G +G +A+ L +L+E+
Sbjct: 21 VVGGGISGLAVAHHLRSRGTDAVLLESSA 49
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 32.3 bits (74), Expect = 0.076
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
+VGAG AG +LA L L V+++E + S
Sbjct: 17 VVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGES 51
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 31.9 bits (73), Expect = 0.092
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
+VGAG AG +LA L L V+++E + S
Sbjct: 16 VVGAGPAGMMLAGELRLAGVEVVVLERLVERTGES 50
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 32.0 bits (73), Expect = 0.10
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
+VG G G +LA L L++E P
Sbjct: 54 VVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHD 88
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 31.6 bits (71), Expect = 0.12
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
++GAG +G A +L +H V + EA
Sbjct: 18 VIGAGVSGLAAAYKLKIHGLNVTVFEAEG 46
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 31.6 bits (72), Expect = 0.12
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
I+G G G LA L+ L++E D
Sbjct: 31 ILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHP 65
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 31.2 bits (71), Expect = 0.16
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
+VGAG G A L+ VL++E S +
Sbjct: 10 VVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYP 44
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 30.7 bits (70), Expect = 0.16
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIE 35
I G G G ++AN S H+V++++
Sbjct: 24 IFGCGRLGSLIANLASSSGHSVVVVD 49
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 31.0 bits (71), Expect = 0.17
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTS 50
IVG G G LA +LS + V +I+ P + S L+
Sbjct: 13 IVGNGPGGFELAKQLSQTYEVTVIDKEPVPYY-SKPMLSH 51
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 31.1 bits (71), Expect = 0.19
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 11 IVGAGTAG----CVLANRLSLHHTVLLIEAGD 38
+VGAG +G L R + V+L EAG
Sbjct: 396 VVGAGPSGLEAARALGVR---GYDVVLAEAGR 424
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 30.8 bits (69), Expect = 0.19
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 11 IVGAGTAGCVLANRLS---LHHTVLLIEAGD 38
++G G +G + LS V+L+E+ +
Sbjct: 7 VLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.8 bits (70), Expect = 0.20
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 11 IVGAGTAG----CVLANRLSLHHTVLLIEAGD 38
IVGAG +G VL +TV L + +
Sbjct: 394 IVGAGPSGSEAARVLMES---GYTVHLTDTAE 422
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 31.0 bits (70), Expect = 0.22
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
+VG G +G A L V+++EA D
Sbjct: 9 VVGGGISGMAAAKLLHDSGLNVVVLEARD 37
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 30.6 bits (70), Expect = 0.23
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLI 34
I+G+G AG L + +
Sbjct: 4 IIGSGIAGLSAGVALRRAGKKVTL 27
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 30.7 bits (69), Expect = 0.24
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWS 44
IVG G AG LA +L+ ++E + P
Sbjct: 37 IVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELG 72
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 30.5 bits (69), Expect = 0.30
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEA 36
I+G G G +A L + V + E
Sbjct: 31 IIGGGPVGLTMAKLLQQNGIDVSVYER 57
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 30.4 bits (68), Expect = 0.32
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 11 IVGAGTAGCVLANRLSLHHT------VLLIEAGDFPSFWS 44
IVGAG AG + A LS + V +I+ +
Sbjct: 13 IVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 52
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 30.3 bits (69), Expect = 0.33
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIE-------------AGDFPSFWSNIPLTSPILQRS 56
++GAG AG LS H V+++E A + + P + S
Sbjct: 14 VIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGT-PQVRALTAAS 71
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.0 bits (68), Expect = 0.36
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VGAG G + L+ + H ++++E
Sbjct: 5 VVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 30.1 bits (68), Expect = 0.37
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 11 IVGAGTAGCVLANRLS---LHHTVLLIEAGDF 39
++G G G A L + LI +
Sbjct: 7 VIGGGVGGIATAYNLRNLMPDLKITLISDRPY 38
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 30.3 bits (67), Expect = 0.38
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEA 36
IVGAGTAG L L H V +
Sbjct: 27 IVGAGTAGLHLGLFLRQHDVDVTVYTD 53
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 29.9 bits (66), Expect = 0.42
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
I+G G C+L+ LS + +L+++ +
Sbjct: 25 ILGTGLKECILSGLLSHYGKKILVLDRNPYY 55
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 30.0 bits (67), Expect = 0.44
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 11 IVGAGTAGCVLANRLS---LHHTVLLIEAGDFP 40
IVG G G A + L+EAG+
Sbjct: 9 IVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics,
PANE, unknown function, cytoplasm, NADP,
oxidoreductase; 1.90A {Bacillus subtilis}
Length = 307
Score = 29.5 bits (67), Expect = 0.49
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLI 34
I+G G+ G + A LSL+H V ++
Sbjct: 7 IIGGGSVGLLCAYYLSLYHDVTVV 30
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 29.8 bits (67), Expect = 0.49
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
+VG G +G A L+ VLL+E G+
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGE 34
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 29.6 bits (67), Expect = 0.51
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 11 IVGAGTAG----CVLANRLSLHHTVLLIEAGD 38
+VGAG AG A R H V L +A
Sbjct: 378 VVGAGPAGLAFAINAAAR---GHQVTLFDAHS 406
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.4 bits (65), Expect = 0.59
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 11 IVGAGTAGCVLANRLSLH---HTVLLIE 35
++GAG AG V A++L + ++E
Sbjct: 5 VIGAGPAGLVFASQLKQARPLWAIDIVE 32
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.4 bits (66), Expect = 0.63
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS 41
IVGAGT G A L+ V +++ PS
Sbjct: 11 IVGAGTWGTSTALHLARRGYTNVTVLDPYPVPS 43
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.1 bits (66), Expect = 0.63
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRL-SLHHTVLLIE 35
I+G T LA + S + V++I
Sbjct: 5 IIGGETTAYYLARSMLSRKYGVVIIN 30
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 29.3 bits (66), Expect = 0.65
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 11 IVGAGTAGCVLANRLSLH----HTVLLIEAGDF 39
I+GAGT G A + H V LI A D+
Sbjct: 9 ILGAGTGGMPAAYEMKEALGSGHEVTLISANDY 41
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 29.4 bits (65), Expect = 0.66
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGD 38
I+GAG AG A+ L + L++EA D
Sbjct: 13 IIGAGIAGLKAASTLHQNGIQDCLVLEARD 42
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.1 bits (66), Expect = 0.68
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 11 IVGAGTAGCVLANRLSLHHT-VLLIEAGDF 39
++G G G +A L+ + L E+G
Sbjct: 22 VIGGGIIGSAIAYYLAKENKNTALFESGTM 51
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 29.3 bits (65), Expect = 0.69
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLI 34
++G G G A L+L +VL
Sbjct: 9 VLGLGNGGHAFAAYLALKGQSVLAW 33
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 29.2 bits (66), Expect = 0.71
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIE 35
I+GAG +G +L L +++E
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILE 32
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 29.3 bits (64), Expect = 0.74
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
IVGAG G + A L L + D
Sbjct: 6 IVGAGMTGSLCAALLRRQTSGPLYLAVWD 34
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.1 bits (66), Expect = 0.91
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 11 IVGAGTAGCVLANRL--SLHHTVLLIEAGD 38
++GAG G ++L L T + + D
Sbjct: 13 VIGAGFGGIYAVHKLHHELGLTTVGFDKAD 42
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 11 IVGAGTAGCVLANRLS-------LHHTVLLIEAGD 38
I+G G G A + L + L+EA
Sbjct: 10 IIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 28.7 bits (64), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGD 38
+VGAG +G A RLS +L++EA D
Sbjct: 9 VVGAGMSGISAAKRLSEAGITDLLILEATD 38
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.5 bits (64), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
I+G+G+ G + VL+ +A P
Sbjct: 7 IIGSGSVGAAAGYYATRAGLNVLMTDAHMPP 37
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10
c.2.1.6
Length = 276
Score = 28.3 bits (62), Expect = 1.4
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 10 NIVGAGTAGCVLANRLSLHHTVLLI 34
N VG GT L + + I
Sbjct: 6 NFVGTGTLTRFFLECLKDRYEIGYI 30
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 28.4 bits (62), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
I+G+G +G A +L V L+EA D
Sbjct: 283 IIGSGVSGLAAARQLQSFGMDVTLLEARD 311
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
+VGAG AG +R TV EA
Sbjct: 26 VVGAGIAGLYAIHRFRSQGLTVRAFEAAS 54
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 28.1 bits (63), Expect = 1.5
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 4/33 (12%)
Query: 11 IVGAGTAGCVLANRLS----LHHTVLLIEAGDF 39
++G A L V +I F
Sbjct: 6 VLGGRFGALTAAYTLKRLVGSKADVKVINKSRF 38
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 28.3 bits (64), Expect = 1.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIE 35
IVG G G LA RL ++V LIE
Sbjct: 240 IVGGGNIGASLAKRLEQTYSVKLIE 264
Score = 27.6 bits (62), Expect = 2.2
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSL-HHTVLLIE 35
I+GAG G LA L ++ + +++
Sbjct: 8 ILGAGQVGGTLAENLVGENNDITIVD 33
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIE 35
I G G G LA LS H ++LI+
Sbjct: 9 IAGIGRVGYTLAKSLSEKGHDIVLID 34
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 27.7 bits (61), Expect = 2.0
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLL 33
++G GT G +A L+ H V +
Sbjct: 24 VLGTGTVGRTMAGALADLGHEVTI 47
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 27.9 bits (63), Expect = 2.0
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSL-HHTVLLIEAGD 38
++GAG G +A L+ H VL+ EA +
Sbjct: 9 VIGAGVVGLAIARALAAGGHEVLVAEAAE 37
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 27.6 bits (60), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 11 IVGAGTAGCVLANRL-SLHHTVLLIEA 36
IVGAG AG V + L H V ++EA
Sbjct: 49 IVGAGIAGLVAGDLLTRAGHDVTILEA 75
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 27.9 bits (61), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
I+G+G +G A +L V L+EA D
Sbjct: 112 IIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.8 bits (62), Expect = 2.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPS 41
+VG G G A +++ H VL++E F +
Sbjct: 9 VVGGGPVGLATAWQVAERGHRVLVLERHTFFN 40
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 27.7 bits (62), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFP 40
+VGAG+ G +L+ LL++A D P
Sbjct: 8 VVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP 38
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRL-SLHHTVLLIEAGD 38
++GAG G A + VL IEAG+
Sbjct: 14 VIGAGVTGIYQAFLINQAGMKVLGIEAGE 42
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 27.5 bits (62), Expect = 3.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
+VGAG +G RL L +V +IE
Sbjct: 21 VVGAGFSGLYALYRLRELGRSVHVIETAG 49
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 27.1 bits (60), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS 41
+VGAG G A L + +VL+++AG P
Sbjct: 28 VVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG 60
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 25.9 bits (58), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLI 34
I GAG+AG LAN L I
Sbjct: 9 IYGAGSAGLQLANMLRQGKEFHPI 32
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 26.4 bits (59), Expect = 5.7
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 11 IVGAGTAGCVLANRLSLHHT-VLLIEAG 37
++G G G +A+ L+ V +IE
Sbjct: 10 VIGGGIVGVTIAHELAKRGEEVTVIEKR 37
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 26.4 bits (59), Expect = 5.8
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
I+G G A RLS +++ E G++ SF
Sbjct: 6 IIGGVAGGASAAARARRLSETAEIIMFERGEYVSF 40
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 26.3 bits (59), Expect = 6.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
+VGA G A+ RL +++ E SF
Sbjct: 6 VVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF 40
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A*
2yr5_A* 3ayl_A*
Length = 721
Score = 26.4 bits (56), Expect = 6.4
Identities = 9/37 (24%), Positives = 10/37 (27%), Gaps = 9/37 (24%)
Query: 11 IVGAGTAGCVLANRL---------SLHHTVLLIEAGD 38
IVG G G L V + EA
Sbjct: 61 IVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP 97
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 26.3 bits (59), Expect = 6.6
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
++G+ G L + E GDF SF
Sbjct: 5 VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF 39
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 26.1 bits (58), Expect = 6.6
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 11 IVGAGTAGCVLANRLSLH---HTVLLIEA 36
+VG +G A L L V + E
Sbjct: 10 VVGGSISGLTAA--LMLRDAGVDVDVYER 36
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 26.0 bits (58), Expect = 6.6
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLI 34
I+GAG GC L+ H V+LI
Sbjct: 24 IMGAGAVGCYYGGMLARAGHEVILI 48
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 26.3 bits (59), Expect = 6.6
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
I+G AG A R + V+ +E G+ S+
Sbjct: 41 IIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSY 75
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 26.4 bits (59), Expect = 6.7
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 11 IVGAGTAG----CVLANRLSLHHTVLLIEAGDFPSF 42
+VGA AG + + +++ + SF
Sbjct: 40 VVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISF 75
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 26.1 bits (58), Expect = 7.1
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 10 NIVGAGTAGCVL----ANRLSLH-HTVLLIEAG 37
+IV +L + ++ LI+AG
Sbjct: 214 SIVALNEHASILHYMQCDTVAPKESRSFLIDAG 246
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 26.3 bits (59), Expect = 7.1
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
+VG AG V E D SF
Sbjct: 5 VVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF 39
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 25.9 bits (58), Expect = 7.4
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
I+GA AG A + + LI+ +
Sbjct: 7 IIGASFAGISAAIASRKKYPQAEISLIDKQATVGY 41
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 26.1 bits (58), Expect = 7.5
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLI 34
I+G G G +A L LI
Sbjct: 7 IIGPGAVGTTIAYELQQSLPHTTLI 31
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 26.0 bits (58), Expect = 7.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
++GA G A RL V +I+ S+
Sbjct: 8 VIGAVALGPKAACRFKRLDPEAHVTMIDQASRISY 42
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 26.0 bits (58), Expect = 7.8
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 11 IVGAGTAGCVLAN---RLSLHHTVLLIEAGDFPSF 42
+VG G +A RLS ++++E G++ SF
Sbjct: 41 VVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF 75
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP:
a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 25.7 bits (57), Expect = 8.0
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLI 34
++G G G + L H V
Sbjct: 5 VLGCGALGQLWLTALCKQGHEVQGW 29
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding
domain, PSI-2, NYSGXRC, structur genomics, protein
structure initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 25.8 bits (57), Expect = 8.1
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLI 34
IVGAG G L RL+L + ++
Sbjct: 8 IVGAGAVGGYLGARLALAGEAINVL 32
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 26.0 bits (56), Expect = 8.1
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLI 34
+ G G L+ + V ++
Sbjct: 7 VCGGGNGAHTLSGLAASRDGVEVRVL 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.433
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,809,299
Number of extensions: 155407
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 118
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)