RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2463
(177 letters)
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 93.8 bits (232), Expect = 8e-24
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
IVG GT+GC LA LS + VL++E G P+ + N+ + + + +T +
Sbjct: 31 IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER-- 88
Query: 71 SGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSK 120
+ + RG+VLGG+ IN + + A G +D V++
Sbjct: 89 --FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQ 136
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 86.1 bits (212), Expect = 5e-21
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETA 65
I G G G +A +L+ VL+IE G + S P + + D Y T
Sbjct: 29 IAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTV 88
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHI 125
P N N + GK LGGS IN + ++W +G ++
Sbjct: 89 PLIN------NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSW--EKVFGMEGWNWDNM 140
Query: 126 IGYDRK 131
Y +K
Sbjct: 141 FEYMKK 146
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 81.1 bits (199), Expect = 4e-19
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETA 65
I G G G A RL+ + +VL+IE+G + S + S D YET
Sbjct: 22 IAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETV 81
Query: 66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS 119
N + G LGGS +N ++W F +
Sbjct: 82 EL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 130
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 75.0 bits (183), Expect = 5e-17
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 20/125 (16%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAG-------------------DFPSFWSNIPLTS 50
++G+G G V A RL+ ++E G D S W
Sbjct: 12 VIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQ 71
Query: 51 PILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
P+ + + +G+ +GG +N + FE
Sbjct: 72 PVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL 131
Query: 111 PWFDY 115
P D
Sbjct: 132 PSVDS 136
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 74.6 bits (182), Expect = 7e-17
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 6/127 (4%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
IVG+G GC A L + V + + G+ S ++ ++ ++ Q
Sbjct: 9 IVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQ 68
Query: 70 SSGGLKNNVSFWPRGKVLGGSGQINLL-----NHYDGRPEDFEAWGPWFDYGNVSKVLGH 124
+ N + G +S
Sbjct: 69 LMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTC 128
Query: 125 IIGYDRK 131
+
Sbjct: 129 ATPRFDR 135
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 66.2 bits (160), Expect = 6e-14
Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 21/129 (16%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAG-DFPSFWSNIPLTSPILQRSE----------- 57
++G G V A RL L++E G + + + +L +
Sbjct: 7 VIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEA 66
Query: 58 --------HDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
P A + + G+ +GG +N + + FE
Sbjct: 67 PLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI 126
Query: 110 GPWFDYGNV 118
P D +
Sbjct: 127 LPRVDSSEM 135
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 60.8 bits (146), Expect = 5e-12
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPI-----LQRSEHDWQYET 64
IVGAG G + A+RLS VLL+E G + + +P L + + +E+
Sbjct: 7 IVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFES 66
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWF 113
+S+ G ++GG +N ++ DF + W
Sbjct: 67 -LFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP 114
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 288
Score = 39.7 bits (91), Expect = 7e-05
Identities = 18/142 (12%), Positives = 30/142 (21%), Gaps = 5/142 (3%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPS-FWSNIPLTSPILQRSEHDWQYETAPQ 67
I GAG G A L V L+E+ I + ++
Sbjct: 6 IAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAA 65
Query: 68 ANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIG 127
+ G + + + + V + LG
Sbjct: 66 T--AIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAV 123
Query: 128 YDRKTNVGNNVEDFPVRVSLSD 149
D V + D
Sbjct: 124 RTGLGVERIEERDGRVLIGARD 145
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 39.4 bits (90), Expect = 9e-05
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 1 MPTEYLSLENIVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHD 59
+ T+Y + ++G G C+L+ LS VL I+ D + S + ++ + +
Sbjct: 2 IDTDYDVI--VLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQN 59
Query: 60 WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDY 115
+ ++ NV P+ + G L++ R DF+ + +
Sbjct: 60 PISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVF 115
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4
{Thale cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 38.3 bits (88), Expect = 2e-04
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPS--FWSNIPLTSPILQRSEHDW 60
+VGAG+AG A +S + V +IE P W L S ++ R
Sbjct: 38 VVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHL 91
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 37.9 bits (86), Expect = 3e-04
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFP 40
++G G C+L+ +S VL ++ +
Sbjct: 11 VLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 37.9 bits (87), Expect = 3e-04
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
IVG+G G V AN L VL+IE +
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 37.1 bits (85), Expect = 6e-04
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
IVGAG +G V+ +L+ H V +I+ D
Sbjct: 7 IVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 37
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 34.5 bits (78), Expect = 0.003
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
+G G+ G NR + LIEA + N+ + +
Sbjct: 7 AIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGP 66
Query: 70 SSGGLKNNVSF 80
G F
Sbjct: 67 DYGFDTTINKF 77
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 34.3 bits (77), Expect = 0.004
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VG +G A L V + E P
Sbjct: 9 VVGGSISGLTAALMLRDAGVDVDVYERSPQP 39
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 34.5 bits (77), Expect = 0.005
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFP 40
+VGAG +G A RLS +L++EA D
Sbjct: 5 VVGAGMSGISAAKRLSEAGITDLLILEATDHI 36
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 380
Score = 34.4 bits (78), Expect = 0.005
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 11 IVGAGTAGCVLANRLSLH-------HTVLLIEAGDFP 40
IVGAG AG A RL V L+E
Sbjct: 37 IVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 33.9 bits (76), Expect = 0.006
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
++G G +G + A + VLL++ G+
Sbjct: 7 VIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 33.8 bits (76), Expect = 0.006
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
I+GAG +G +L L +++E
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 33.3 bits (75), Expect = 0.009
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 6/115 (5%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPIL-----QRSEHDWQYET 64
++G G+ G A R + L ++E+ N+ + SE +
Sbjct: 8 VIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHAD 67
Query: 65 APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS 119
+ G V R + I N E + +
Sbjct: 68 YGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPT 122
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 33.6 bits (75), Expect = 0.009
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPS 41
++G G G +A L+ + L E+G
Sbjct: 9 VIGGGIIGSAIAYYLAKENKNTALFESGTMGG 40
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase
{Soil-living yeast (Trichosporon cutaneum) [TaxId:
5554]}
Length = 360
Score = 33.5 bits (75), Expect = 0.010
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 11 IVGAGTAGCVLANRLSLH------HTVLLIEAGDFPSFWS 44
IVGAG AG + A LS + V +I+ +
Sbjct: 12 IVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 51
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 32.9 bits (73), Expect = 0.013
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 11 IVGAGTAGCVLA---NRLSLHHTVLLIEAGDFPSFWS 44
++G+ G L + E GDF SF S
Sbjct: 5 VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS 41
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 32.9 bits (74), Expect = 0.014
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFP 40
I+GAG AG A +L+ L +V + + G
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 32.8 bits (73), Expect = 0.015
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
+VGAG+ G +L+ LL++A D P
Sbjct: 8 VVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP 38
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 32.6 bits (73), Expect = 0.016
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPS 41
I+G+G AG A V+L+E P
Sbjct: 28 IIGSGGAGLAAAVSARDAGAKVILLEKEPIPG 59
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 32.3 bits (72), Expect = 0.026
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPS 41
+VG+G AG A + V+LIE
Sbjct: 21 VVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 311
Score = 32.2 bits (72), Expect = 0.027
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 11 IVGAGTAGCVLANRLS---LHHTVLLIEAGDFP 40
IVGAG++G A ++ V +IE+ P
Sbjct: 55 IVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 31.6 bits (70), Expect = 0.027
Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 5/129 (3%)
Query: 11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
++GAG A A+ L+ + + + E ++ S + L +++ E
Sbjct: 9 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDL 68
Query: 69 NSSGGLKNNVS---FWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHI 125
++S G + D + L +
Sbjct: 69 GVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEV 128
Query: 126 IGYDRKTNV 134
+T+
Sbjct: 129 DPETMQTSE 137
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 32.0 bits (71), Expect = 0.029
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 11 IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSN 45
I+GAG G LA+ L + + +++ G +
Sbjct: 6 IIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide
dehydrogenase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 223
Score = 31.7 bits (71), Expect = 0.030
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
+VGAG G V A R + L V ++E G+ N+ S +
Sbjct: 8 VVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEE 67
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 31.8 bits (71), Expect = 0.031
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPS 41
I+G+G AG LA RL+ H V+++ G
Sbjct: 12 IIGSGAAGLSLALRLADQHQVIVLSKGPVTE 42
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 30.7 bits (68), Expect = 0.063
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDW 60
I+G G G V A R L +L+E NI +
Sbjct: 10 IIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQ 60
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 30.7 bits (68), Expect = 0.069
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPS 41
+VGAG+AG + V+L++ F
Sbjct: 24 VVGAGSAGFNASLAAKKAGANVILVDKAPFSG 55
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide
dehydrogenase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 233
Score = 30.6 bits (68), Expect = 0.070
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
I+G G AG V A + + L +E
Sbjct: 10 IIGGGPAGYVAAIKAAQLGFNTACVEKRG 38
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite
reductase {Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 30.1 bits (66), Expect = 0.080
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFW 43
IVG G G LA +LS + V +I+ P +
Sbjct: 5 IVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYS 37
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 30.4 bits (67), Expect = 0.089
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPS 41
++G+G G A L+ ++V ++
Sbjct: 11 VLGSGVIGLSSALILARKGYSVHILARDLPED 42
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
dehydrogenase {Garden pea (Pisum sativum) [TaxId:
3888]}
Length = 221
Score = 29.8 bits (66), Expect = 0.14
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGD 38
I+G G G V A + + L IE
Sbjct: 8 IIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 29.6 bits (65), Expect = 0.15
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAG 37
++G G+ G A R + + V L+E
Sbjct: 6 VIGGGSGGMAAARRAARHNAKVALVEKS 33
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 29.5 bits (65), Expect = 0.19
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 1/72 (1%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
++G G G A + V ++E P + +
Sbjct: 11 VLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLA 70
Query: 70 SSGGLKNNVSFW 81
++G
Sbjct: 71 ANGIKYPEPELD 82
>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 29.5 bits (65), Expect = 0.19
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 11 IVGAGTAGCVLA---NRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQ 67
+VG+G AG A + V + E P + + +
Sbjct: 6 VVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP--FGLVRFGVAPDHPEVKNVINTFTQT 63
Query: 68 ANSSG 72
A S
Sbjct: 64 ARSDR 68
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 29.4 bits (65), Expect = 0.21
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPS 41
++GAG G A + H+VL +
Sbjct: 5 VIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 28.9 bits (63), Expect = 0.22
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFW 43
++GAG A L + L+ GD
Sbjct: 8 VLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 41
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 28.9 bits (63), Expect = 0.24
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPL 48
I+G G+ G A + V++++ +N L
Sbjct: 8 IIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGL 46
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide
dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 28.9 bits (63), Expect = 0.29
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQY 62
++GAG G V A + + L LIE + + T +
Sbjct: 8 VIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 29.0 bits (63), Expect = 0.33
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDF 39
++G G AG A + +++
Sbjct: 10 VIGGGLAGLRAAVATQQKGLSTIVLSLIPV 39
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 28.8 bits (63), Expect = 0.37
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 11 IVGAGTAGCVLANRLSLH-----HTVLLIEAGDF 39
I+G G +GC A + V L+E
Sbjct: 26 IIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 59
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 28.2 bits (61), Expect = 0.40
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 11 IVGAGTAGCVLANRLSLHH---TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQY 62
+VG GT G A + L V LIE ++ E
Sbjct: 7 VVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter
sp., py2 [TaxId: 35809]}
Length = 261
Score = 28.4 bits (62), Expect = 0.44
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDF 39
+G G AG + L + L+++ F
Sbjct: 47 FIGGGAAGRFGSAYLRAMGGRQLIVDRWPF 76
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 27.7 bits (60), Expect = 0.66
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 11 IVGAGTAGCVLANRLSLHH---TVLLIEAGDFPSFW 43
++G GTA A + VL++ +
Sbjct: 9 LIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYM 44
>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase
{Escherichia coli [TaxId: 562]}
Length = 311
Score = 27.6 bits (60), Expect = 0.82
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 11 IVGAGTAGCVLANRLS---LHHTVLLIEAGDF 39
IVGAG AG A + + + LI
Sbjct: 10 IVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 26.7 bits (58), Expect = 1.4
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIE 35
++GAG AG A ++S T L+
Sbjct: 12 VIGAGGAGMRAALQISQSGQTCALLS 37
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 26.0 bits (56), Expect = 1.8
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 1/56 (1%)
Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETA 65
++G G G + L H V P N+ T +
Sbjct: 5 VLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDF 60
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 196
Score = 26.5 bits (57), Expect = 1.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIE 35
+ G+G G L LSL + V +++
Sbjct: 5 VAGSGYVGLSLGVLLSLQNEVTIVD 29
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 26.3 bits (56), Expect = 1.9
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQ 61
IVG G AG +A L + GD ++P S + +
Sbjct: 8 IVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAE 59
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 25.6 bits (56), Expect = 2.0
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 11 IVGAGTAGCVLANRLSLHHTVLLIEA-GDFPSFWSNIPLTSPILQRSE 57
IVG G G LA+ + L P I
Sbjct: 8 IVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDL 55
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 26.2 bits (56), Expect = 2.6
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQY 62
++GAG+ G A + + V +I+ L + +
Sbjct: 8 VIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKL 61
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 26.1 bits (56), Expect = 2.6
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 11 IVGAGTAGCVLANRLSLHH--TVLLIEAGDFP 40
++GAG+ G + H V +I+
Sbjct: 8 VIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH 39
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 25.4 bits (54), Expect = 4.1
Identities = 14/134 (10%), Positives = 24/134 (17%), Gaps = 18/134 (13%)
Query: 11 IVGAGTAGCVLANRLS----LHHTVLLIEAGDFPSFWSN---IPLTSPILQRSEHDWQYE 63
I+G G AG A + V +I+ +P + I
Sbjct: 6 ILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRR 65
Query: 64 TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLG 123
+S V + G
Sbjct: 66 APHLGFHIDFDDAKISLPQIHA-----------RVKTLAAAQSADITAQLLSMGVQVIAG 114
Query: 124 HIIGYDRKTNVGNN 137
D + +
Sbjct: 115 RGELIDSTPGLARH 128
>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 274
Score = 25.3 bits (55), Expect = 5.0
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Query: 63 ETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVL 122
A +A+S G +F K+ + + + + A WF + L
Sbjct: 83 TDAKRADSDTGKVLPSAFVGTSKLDDANATATM--DFTNWNQTLTAHKSWFMLKDKIAFL 140
Query: 123 GHIIGYDRKTNVGNNVED 140
G I ++
Sbjct: 141 GSNIQNTSTDTAATTIDQ 158
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 25.0 bits (54), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIE 35
IVGAG +G A L+ V L+
Sbjct: 7 IVGAGFSGAETAFWLAQKGVRVGLLT 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.137 0.433
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,341
Number of extensions: 31361
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 63
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)