BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2466
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9X|D Chain D, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|H Chain H, The Crystal Structure Of Human Gins Core Complex
pdb|2Q9Q|B Chain B, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|F Chain F, The Crystal Structure Of Full Length Human Gins Complex
Length = 223
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Query: 10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
D + + +E L+ +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct: 6 DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65
Query: 70 EKLRKDDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHD 128
+ +++D +V++SYLR R+ KIEKF +++++ R + LS +
Sbjct: 66 RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125
Query: 129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
EL +A+ ++ + +++ + L +PPNL+ ++ + + KPDL++YVFLR + N+ +
Sbjct: 126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185
Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
++ + D + L++GSQH++ Y++IA V + VQL+
Sbjct: 186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223
>pdb|2EHO|A Chain A, Crystal Structure Of Human Gins Complex
pdb|2EHO|E Chain E, Crystal Structure Of Human Gins Complex
pdb|2EHO|I Chain I, Crystal Structure Of Human Gins Complex
Length = 203
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 121/199 (60%), Gaps = 3/199 (1%)
Query: 18 ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDX 77
+E L+ +++E ++ AW NEK +PE+L +K E ++C+ EQ++ EEN+ + +++D
Sbjct: 4 GGSEEVVLTPAELIERLEQAWXNEKFAPELLESKPEIVECVXEQLEHXEENLRRAKREDL 63
Query: 78 XXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHDELKYAKSY 136
+V++SYLR R+ KIEKF +++++ R + LS +EL +A+ +
Sbjct: 64 KVSIHQXEXERIRYVLSSYLRCRLXKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREF 123
Query: 137 LKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKED 195
+ +++ L PPNL+ ++ + + KPDL++YVFLR + N+ + ++ + D
Sbjct: 124 XANTESYLKNVALKHXPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRD 183
Query: 196 EFV-LDEGSQHILPYESIA 213
+ L++GSQH++ Y++IA
Sbjct: 184 YVIDLEKGSQHLIRYKTIA 202
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1 MNVAGNSLFDIIETEPAANEDENCLSVQKVLETIKT 36
MNVA S FDII P + EDE+ +++ E IK
Sbjct: 67 MNVAMPSWFDIIGLSPDSQEDES--GIKQAAENIKA 100
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 129 ELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTY 172
+L K YL+S+ NH +K +N NL EE+ + ++ ++ Y
Sbjct: 1444 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAY 1487
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 129 ELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTY 172
+L K YL+S+ NH +K +N NL EE+ + ++ ++ Y
Sbjct: 371 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAY 414
>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 624
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 129 ELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTY 172
+L K YL+S+ NH +K +N NL EE+ + ++ ++ Y
Sbjct: 393 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAY 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,163,862
Number of Sequences: 62578
Number of extensions: 240254
Number of successful extensions: 658
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 33
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)