BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2466
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q499W2|SLD5_RAT DNA replication complex GINS protein SLD5 OS=Rattus norvegicus
GN=Gins4 PE=2 SV=1
Length = 223
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 141/209 (67%), Gaps = 3/209 (1%)
Query: 19 NEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIR 78
+E L+ +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +K D++
Sbjct: 15 GSEEVVLTPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRAKKGDLK 74
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHDELKYAKSYL 137
+ IHRME+ERIR+V++SYLR R+ KIEKF I++++ R + + LS +E +AK Y+
Sbjct: 75 VSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPEEFVFAKEYM 134
Query: 138 KSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDE 196
+ HF + L +PPNL+ ++ + + KPDL++YVFLR + N+ + ++ + D
Sbjct: 135 DHTETHFKNVALKHMPPNLQKVDLMRAVPKPDLDSYVFLRVKERQENILVEPEADEQRDY 194
Query: 197 FV-LDEGSQHILPYESIAEFVKNNDVQLL 224
+ L+EGSQH++ Y++IA V + VQL+
Sbjct: 195 VIDLEEGSQHLIRYKTIAPLVASGAVQLI 223
>sp|Q99LZ3|SLD5_MOUSE DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4
PE=1 SV=1
Length = 223
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 140/210 (66%), Gaps = 3/210 (1%)
Query: 18 ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDI 77
+E L+ +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +K D+
Sbjct: 14 GGSEEMVLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLRRAKKGDL 73
Query: 78 RIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHDELKYAKSY 136
++ IHRME+ERIR+V++SYLR R+ KIEKF I++++ RS + LS +E +AK Y
Sbjct: 74 KVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLSPEEFVFAKEY 133
Query: 137 LKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKED 195
+ + HF + L +PPNL+ ++ + + KPDL++YVFLR + N+ + ++ + D
Sbjct: 134 MDHTETHFKNVALKHMPPNLQKVDLLRAVPKPDLDSYVFLRVKERQENILVEPEADEQRD 193
Query: 196 EFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
+ L+ GSQH++ Y++IA V + VQL+
Sbjct: 194 YVIDLEVGSQHLIRYKTIAPLVASGAVQLI 223
>sp|Q9BRT9|SLD5_HUMAN DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4
PE=1 SV=1
Length = 223
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 146/218 (66%), Gaps = 3/218 (1%)
Query: 10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
D + + +E L+ +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct: 6 DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65
Query: 70 EKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHD 128
+ +++D+++ IH+ME+ERIR+V++SYLR R+ KIEKF +++++ R + LS +
Sbjct: 66 RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125
Query: 129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
EL +A+ ++ + +++ + L +PPNL+ ++ + + KPDL++YVFLR + N+ +
Sbjct: 126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185
Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
++ + D + L++GSQH++ Y++IA V + VQL+
Sbjct: 186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223
>sp|A2VE40|SLD5_BOVIN DNA replication complex GINS protein SLD5 OS=Bos taurus GN=GINS4
PE=2 SV=1
Length = 223
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 143/218 (65%), Gaps = 3/218 (1%)
Query: 10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
D++ + + +E L+ ++++ ++ AW NEK +PE+L NK E ++C++EQ++ MEEN+
Sbjct: 6 DLLGQDSDGDSEEVILTPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLEHMEENL 65
Query: 70 EKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEK-FTLDIVQQDFERSSDNMYLSHD 128
++ +K D+++ IH+ME+ERIRFV++SYLR R+ KIEK F + ++ R + LS +
Sbjct: 66 KRAKKGDLKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRREEEPPILSPE 125
Query: 129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
EL +AK +L + + + D L +PPNL+ ++ + + KPDL+ YVFLR + N+ +
Sbjct: 126 ELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLRTVPKPDLDAYVFLRVKERQENILVE 185
Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
++ + D + L+EGSQH++ Y ++A V + +QL+
Sbjct: 186 PENDEQRDYVIDLEEGSQHLMRYRTVAPLVASGAIQLI 223
>sp|Q9P7C8|SLD5_SCHPO DNA replication complex GINS protein sld5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sld5 PE=1 SV=1
Length = 214
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 23/205 (11%)
Query: 32 ETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIE----KLRKDDIRIEIHRMEIE 87
E + T W NE+++P++LP E + +L++I+ E ++ R + + E+E
Sbjct: 21 EDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSYRSVLMQTELE 80
Query: 88 RIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDN--MYLSHDELKYAKSYLKSIDNHF- 144
R++FV+ SY+R RI KI+K+ + +S N +YLS E +Y + + + H+
Sbjct: 81 RVKFVLRSYMRTRINKIDKYA------QYIQSHPNLLLYLSSPERQYLLRHQQIVHRHYM 134
Query: 145 DKYLNMLPPNLRTLEEN----KKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFV-L 199
D +L +P + L++ + PD++T VF V N + + E+E++ L
Sbjct: 135 DSFLREVPAKMNKLDDKVGNLSMVASPDMDTAVFC-----VVNESVEENFRVSENEYITL 189
Query: 200 DEGSQHILPYESIAEFVKNNDVQLL 224
D+G IL Y I+++++ V L+
Sbjct: 190 DKGDVLILRYSVISDYLRLGVVSLI 214
>sp|Q2HE71|SLD5_CHAGB DNA replication complex GINS protein SLD5 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=SLD5 PE=3 SV=1
Length = 221
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 21/165 (12%)
Query: 31 LETIKTAWKNEKLSPEILPNKVEYIDCMLEQI----KQMEENIEKLRKD-----DIRIEI 81
L+ + AW E+ +PE+L D + E+I KQ E +E++ D + + +
Sbjct: 24 LQELTRAWIAERSAPELLAWPA---DGLFERINDNIKQQIEKVEEMTGDMDPKTNFALIV 80
Query: 82 HRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSID 141
+ E+ER R+++ SYLR RI KI++ TL + D R+ LS EL YA + +
Sbjct: 81 IQTELERYRYLVRSYLRARIAKIDRHTLHYLSTDDLRAR----LSEMELAYATRHQALLH 136
Query: 142 NHF-DKYLNMLPPNLRTLEENKKLIK----PDLNTYVFLRAGKDV 181
NH+ +L+ P NL+ L + I PDL + VF+RA KD
Sbjct: 137 NHYLSSFLSSFPANLQNLNDAAAGISMIETPDLESAVFIRALKDT 181
>sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5 OS=Dictyostelium
discoideum GN=gins4 PE=3 SV=2
Length = 211
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 22/205 (10%)
Query: 30 VLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIR-------IEIH 82
+L+ +K AW NEK +P +L Y D +++++ + E E L I I+
Sbjct: 19 LLDKLKKAWINEKYAPNLL----NYEDVIIKEVMEKIEEKESLCASAISNINLQFTANIY 74
Query: 83 RMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMY--LSHDELKYAKSYLKSI 140
MEIER++++I YL RI+KI+KF I+ + E + Y LS E+ Y + Y +
Sbjct: 75 EMEIERLKYIIKCYLVQRIKKIDKFYSSILLE-IENDEYDSYKLLSEFEINYCQKYKALM 133
Query: 141 DNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVL 199
D +F + LN +P + + ++ N + +P LNT+VF + +D+ + + D + +
Sbjct: 134 DGYFKNTLLNSIPKDFQKMDSN-SINRPFLNTFVFCKPREDLGDFLVDDETID------F 186
Query: 200 DEGSQHILPYESIAEFVKNNDVQLL 224
+ S + L Y I V+ + L+
Sbjct: 187 KKTSIYFLKYLPIKSLVEGGKMDLI 211
>sp|Q03406|SLD5_YEAST DNA replication complex GINS protein SLD5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SLD5 PE=1
SV=1
Length = 294
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 55/248 (22%)
Query: 25 LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR----------- 73
+S Q+ + +WKNE+ SPE+LP + + +L +I + IE +
Sbjct: 54 VSPQQDFSDLMKSWKNERCSPELLPYPHQLMKRLLNRISMQSQLIENISMGFLDMQNASN 113
Query: 74 -------KDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS---SDNM 123
+ + + E+ER++FVI SY+R R+ KI+KF+L + Q + + + S
Sbjct: 114 ANPPMPNESKLPLLCMETELERLKFVIRSYIRCRLSKIDKFSLYLRQLNEDENSLISLTD 173
Query: 124 YLSHDELKYAKS----YLKSIDNHFDKYLNMLPPNLRTLEENKKLI----KPDLNTYVFL 175
LS DE+KY + +LK +++ KY +P L+ + + + + +PD N +VF+
Sbjct: 174 LLSKDEIKYHDTHSLIWLKLVNDSILKY---MPEELQAINDTEGSVNMIDEPDWNKFVFI 230
Query: 176 RA-------------------GKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFV 216
GK V I D+ E E L GS +++ YE I + +
Sbjct: 231 HVNGPPDGKWNEDPLLQENEFGKPCYTVTIPDLKE----EVELTIGSIYVMRYEVIRDLL 286
Query: 217 KNNDVQLL 224
+++ V L+
Sbjct: 287 RDDKVALI 294
>sp|Q6CE80|SLD5_YARLI DNA replication complex GINS protein SLD5 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SLD5 PE=3 SV=1
Length = 260
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 37 AWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKD-----DIRIE--IHRMEIERI 89
+W E++SP +LP K + +L++++ E IE+ D D+++E I E+ERI
Sbjct: 70 SWVTERMSPTLLPTKEALLFRILKRVQLQIEVIEEKSIDMSPDTDVKLELLIVETELERI 129
Query: 90 RFVITSYLRVRIEKIEKFTLDIVQQDFERSS--DNMYLSHDELKYAKSYLKSIDNHF-DK 146
+++I SYLRVR+ KI+ ++ +SS D M +S E Y + + N + +
Sbjct: 130 KYLIRSYLRVRLLKIDN------SMEYYQSSPLDRMNMSQTERMYLNRHYALLKNLYAHQ 183
Query: 147 YLNMLPPNLRTLEENKK----LIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEG 202
++N P +L+ + ++ + +P+++ VF+R KD I D L +G
Sbjct: 184 FMNTFPDSLKQMNDSSGSASMVQEPNMDHPVFVRVVKDTGRKIII-----GNDSVKLRKG 238
Query: 203 SQHILPYESIAEFVKNNDV 221
S ++ Y I ++V++ DV
Sbjct: 239 SIVVIKYSIIVKYVESGDV 257
>sp|Q4IQM6|SLD5_GIBZE DNA replication complex GINS protein SLD5 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=SLD5 PE=3 SV=2
Length = 221
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 22/207 (10%)
Query: 31 LETIKTAWKNEKLSPEIL--PNKVEY------IDCMLEQIKQMEENIEKLRKDDIRIEIH 82
L+ + W E+ +PE+L P + I +E+++ M +++ K + + +
Sbjct: 24 LQALTRLWVAERSAPELLEWPTDGLFERVNARIKTQIEKVEDMTGDMDP--KTNFALIVI 81
Query: 83 RMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDN 142
+ E+ER +F++ S+LR R+ KI+K TL + R LS EL YA + + N
Sbjct: 82 QTELERYKFLMRSFLRARLAKIDKHTLHYLSSQELRDR----LSPTELSYATKHQALLHN 137
Query: 143 HF-DKYLNMLPPNLRTLEENKKLI----KPDLNTYVFLRAGKDVANVYIRDMSENKEDEF 197
H+ +L P L+ L + I PDL+T VF+R +D +VY + + +
Sbjct: 138 HYLSSFLASFPQQLQNLNDTAGNISMIDSPDLDTAVFIRMLRD-KDVYGK--GTDADITL 194
Query: 198 VLDEGSQHILPYESIAEFVKNNDVQLL 224
G I+ + S V D +L+
Sbjct: 195 PATNGDVLIIRWSSAKHMVDVGDAELV 221
>sp|Q6BXX6|SLD5_DEBHA DNA replication complex GINS protein SLD5 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SLD5 PE=3 SV=1
Length = 245
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 115/218 (52%), Gaps = 25/218 (11%)
Query: 28 QKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEE-----------NIEK-LRKD 75
+ + + + A NE++SP++LP K E + +L Q+ ++ N+E +
Sbjct: 32 ENIYDQLVAAMLNERMSPDVLPYKHELMKEVLTQLSNQQQYLLDSHEYGDSNVESGIVTG 91
Query: 76 DIRIEIHRME--IERIRFVITSYLRVRIEKIEKFTLDIVQQ--DFERSSDNMYLSHDELK 131
D ++++ +E IER+ +++ YLR R+ KI+KFT+ + + + + ++D LS +E +
Sbjct: 92 DFKLQLMIIETDIERLNYLVRLYLRTRLAKIDKFTIHYINETSNDDPTNDRSLLSPEETE 151
Query: 132 YAKSYLKSIDNHF-DKYLNMLPPNLRTLEE---NKKLIK-PDLNTYVFLRAGKDVANVYI 186
Y + K + + + +L +P L L++ + +I PD+N VF++ V I
Sbjct: 152 YMHKHFKILTQLYNNSFLKKMPHFLTLLDDTSGGQSMISVPDINQPVFIKVITKVP--II 209
Query: 187 RDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224
++ E+++ E V E +++ Y I ++++ D+ L+
Sbjct: 210 INLDEDEDLELV--ENGIYVVKYSLIKKYIEIGDIVLI 245
>sp|Q6CKF3|SLD5_KLULA DNA replication complex GINS protein SLD5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SLD5 PE=3 SV=1
Length = 292
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 51/233 (21%)
Query: 36 TAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKD----------DIRIEIHRME 85
T WKNE++SPE+LP + L +I++ E IE L D ++ + ME
Sbjct: 67 THWKNERMSPELLPYPHHLMTRTLIRIQERIELIETLSMGYLEDNQELTVDSKLPLLCME 126
Query: 86 --IERIRFVITSYLRVRIEKIEKFTLDIVQQ-----DFERSSDNMYLSHDELKYAKSY-- 136
+ER++F++ S++R R+ KI+K+++ + QQ + S ++ +S +E+KY +
Sbjct: 127 AELERLKFLVRSFIRCRLSKIDKYSIYLRQQSELPNNAGLSRLDLLMSKEEVKYHMKHSD 186
Query: 137 --LKSIDNHFDKYLNMLPPNLRTLEENKKLI----KPDLNTYVFLRA------------- 177
LK +N K+ LP L+ + + + I +PD N VF+
Sbjct: 187 ILLKLFNNAVLKH---LPEELQAVNDTEGSISMIDEPDWNKTVFILVCGGVVDESGIDSK 243
Query: 178 ------GKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224
GK +V I D++E E L G+ +++ Y I + + V L+
Sbjct: 244 LTTDDDGKHCYSVIIEDLNE----EIYLLIGAVYVIRYSVIRDLMTEGRVVLI 292
>sp|Q753I0|SLD5_ASHGO DNA replication complex GINS protein SLD5 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SLD5 PE=3 SV=2
Length = 266
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 16 PAANE----DENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEK 71
PA ++ D++ +V T+ T W NE+++PE+LP + +L ++ E++E
Sbjct: 25 PAGDDTTRLDDSAATVAADYSTLVTHWCNERVAPELLPYPHTLMARVLARLAAQIEHLET 84
Query: 72 L----------RKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSD 121
L R + + E+ER++FV+ S LR R+ KI++F L + Q D RS
Sbjct: 85 LSTGVLEQTLDRSAKLPLLCMEAELERLKFVVRSLLRCRLGKIDRFGLYLRQLD-ARSPG 143
Query: 122 NM--YLSHDELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIK----PDLNTYVF 174
+ LS E Y + + + F + L +P ++ +++ + + P+ +VF
Sbjct: 144 ALQTLLSAQERVYYERHSAILLKLFNNAILRHMPAEMQAVDDTEGSVSMIDEPEWARFVF 203
Query: 175 LRAGKDVANVYIRDMSENKEDEFV 198
L Y+R+ + + D +
Sbjct: 204 L---------YVREPAPDAPDPLL 218
>sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SLD5 PE=3 SV=1
Length = 309
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 60 EQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQ---QDF 116
E I Q E L + + E+ER++FV+ SYLR R+ KI+K++L + Q Q
Sbjct: 124 EAIGQNEYQNNALNNGKLPLLCMEAELERVKFVMRSYLRCRLNKIDKYSLYLRQLGDQGI 183
Query: 117 ERSSDNMYLSHDELKYAKSY----LKSIDNHFDKYLNMLPPNLRTLEENKKLI----KPD 168
S + +S ELKY + LK ++N L +PP L+ + + + + +P+
Sbjct: 184 NLISLDELMSEQELKYHAKHSVILLKLLNNSI---LRHMPPELQAINDTEGSVSMIEEPN 240
Query: 169 LNTYVFLRAGKDVANV-------------YIRDMSENKEDEFV-LDEGSQHILPYESIAE 214
+VF+ ANV Y +++ + DE V L GS +++ Y+ + +
Sbjct: 241 WKKFVFIYVNGP-ANVADDPQLQQSEDGKYYYNITIPEFDEIVELTTGSIYVMRYDIVKD 299
Query: 215 FVKNNDVQLL 224
+++ V+L+
Sbjct: 300 LLRDGKVELI 309
>sp|Q9Y2D4|EXC6B_HUMAN Exocyst complex component 6B OS=Homo sapiens GN=EXOC6B PE=1 SV=3
Length = 811
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 32 ETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERI-- 89
E+++TA ++E++ EI I L + EE+ + K + RI H EIE++
Sbjct: 10 ESLETAAEHERILREIESTDTACIGPTLRSVYDGEEHGRFMEKLETRIRNHDREIEKMCN 69
Query: 90 ----RFV--ITSYLRVRIE--KIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSID 141
FV IT L+VR E K++ D + + + ++ +ELK + ++I
Sbjct: 70 FHYQGFVDSITELLKVRGEAQKLKNQVTD-TNRKLQHEGKELVIAMEELKQCRLQQRNIS 128
Query: 142 NHFDKYLNMLP------------------PNLRTLEENKKLIKPDLNTYVFLRAGKD 180
DK + LP P L+TLE + P ++ Y F + D
Sbjct: 129 ATVDKLMLCLPVLEMYSKLRDQMKTKRHYPALKTLEHLEHTYLPQVSHYRFCKVMVD 185
>sp|A6H5Z3|EXC6B_MOUSE Exocyst complex component 6B OS=Mus musculus GN=Exoc6b PE=2 SV=1
Length = 810
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 32 ETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERI-- 89
E+++TA ++E++ EI I L + EE+ + K + RI H EIE++
Sbjct: 9 ESLETAAEHERILREIESTDTACIGPTLRSVYDGEEHGRFMEKLETRIRNHDREIEKMCN 68
Query: 90 ----RFV--ITSYLRVRIE--KIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSID 141
FV IT L+VR E K++ D + + + ++ +ELK + ++I
Sbjct: 69 FHYQGFVDSITELLKVRGEAQKLKNQVTD-TNRKLQHEGKELVIAMEELKQCRLQQRNIS 127
Query: 142 NHFDKYLNMLP------------------PNLRTLEENKKLIKPDLNTYVFLRAGKD 180
DK + LP P L+TLE + P ++ Y F + D
Sbjct: 128 ATVDKLMLCLPVLEMYSKLRDQMKTKRHYPALKTLEHLEHTYLPQVSHYRFCKVMVD 184
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 7 SLFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPE------------ILPNKVEY 54
++ D I E E + ++E +KT ++E + PE LP +
Sbjct: 1527 NMMDKINRTKTKYEQEKT-DTKALIEKVKTYLQDELVKPEDIEKLANAVLSIQLPKSPDE 1585
Query: 55 IDCMLEQIKQMEENIEKLRKDDIRIEIHRMEI-----ERIRFVITSYLRVRIEKIEKFTL 109
I M+E IK++ NI + DD+ + +I ER + ++ + +++IEK
Sbjct: 1586 IKDMIEDIKKILANITEF-NDDLEYLEKQAKIAGNMKERAKEILNRTELINVKEIEKALN 1644
Query: 110 DIVQ------QDFERSSDNMYLSHDELKYAKSYLKSIDNHFD 145
D + D + + N + +++ + LK+I++H +
Sbjct: 1645 DTAKLHDKIFNDLDEAEQNNDVIREKVNETEPKLKNIEDHLN 1686
>sp|Q3T131|COQ3_BOVIN Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial OS=Bos
taurus GN=COQ3 PE=2 SV=1
Length = 370
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 14 TEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQI 62
TEP + + + V E IKTA ++ P +L ++EY C LE+I
Sbjct: 162 TEPLGRLGASVIGIDPVDENIKTAQHHKSFDP-VLDKRIEYRTCSLEEI 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,591,488
Number of Sequences: 539616
Number of extensions: 3449581
Number of successful extensions: 14011
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 13890
Number of HSP's gapped (non-prelim): 264
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)