Query psy2466
Match_columns 224
No_of_seqs 107 out of 358
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:59:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3176|consensus 100.0 4.1E-55 8.8E-60 365.6 19.8 197 23-224 20-223 (223)
2 COG5086 Uncharacterized conser 100.0 5.2E-39 1.1E-43 261.8 14.8 190 26-224 19-218 (218)
3 KOG3303|consensus 100.0 3.2E-28 6.9E-33 199.4 16.2 171 27-222 7-190 (192)
4 COG5230 Uncharacterized conser 99.9 4.9E-23 1.1E-27 165.8 14.0 164 43-224 19-194 (194)
5 PF05916 Sld5: GINS complex pr 97.8 2.7E-05 5.8E-10 58.1 4.5 44 87-130 65-108 (108)
6 COG1711 DNA replication initia 96.3 0.1 2.2E-06 44.9 12.2 112 30-146 2-114 (223)
7 PF02311 AraC_binding: AraC-li 46.0 29 0.00064 25.4 3.6 38 169-212 21-58 (136)
8 COG0662 {ManC} Mannose-6-phosp 39.3 15 0.00032 28.5 1.0 47 171-223 57-103 (127)
9 PRK10470 ribosome hibernation 36.1 24 0.00053 25.7 1.7 20 93-112 16-35 (95)
10 cd08775 DED_Caspase-like_repea 32.5 31 0.00067 25.0 1.7 53 83-140 16-69 (81)
11 COG3450 Predicted enzyme of th 32.3 57 0.0012 25.4 3.2 34 170-208 62-95 (116)
12 PF07883 Cupin_2: Cupin domain 32.2 64 0.0014 21.2 3.2 33 172-210 20-52 (71)
13 PF06384 ICAT: Beta-catenin-in 30.5 1.7E+02 0.0038 21.2 5.2 23 122-144 30-52 (78)
14 COG3022 Uncharacterized protei 29.6 95 0.0021 27.5 4.5 32 122-153 91-124 (253)
15 cd08813 DED_Caspase_8_repeat2 27.8 1.5E+02 0.0032 21.6 4.6 54 83-141 17-71 (83)
16 KOG3477|consensus 27.6 55 0.0012 24.3 2.3 17 87-103 49-65 (97)
17 KOG4572|consensus 27.3 5.5E+02 0.012 27.1 9.7 56 95-155 499-559 (1424)
18 PF14452 Multi_ubiq: Multiubiq 27.1 1.7E+02 0.0037 20.1 4.8 35 170-209 34-69 (72)
19 PF12990 DUF3874: Domain of un 26.9 72 0.0016 22.7 2.7 28 18-51 19-46 (73)
20 cd08340 DED_c-FLIP_repeat2 Dea 26.8 67 0.0014 23.2 2.6 54 82-140 15-69 (81)
21 cd00552 RaiA RaiA ("ribosome-a 26.4 47 0.001 23.7 1.8 19 93-111 15-33 (93)
22 cd08341 DED_Caspase_10_repeat1 26.2 1.5E+02 0.0032 21.6 4.3 55 82-141 15-70 (82)
23 PF09177 Syntaxin-6_N: Syntaxi 25.7 2.7E+02 0.0058 20.3 6.5 79 25-104 11-96 (97)
24 PF05899 Cupin_3: Protein of u 25.1 90 0.0019 21.7 3.0 33 170-209 26-58 (74)
25 cd06006 R3H_unknown_2 R3H doma 24.9 2.3E+02 0.005 19.3 5.8 38 102-139 2-39 (59)
26 PRK10324 translation inhibitor 23.5 54 0.0012 25.1 1.7 20 93-112 16-35 (113)
27 KOG2253|consensus 23.2 1.4E+02 0.003 30.0 4.8 36 30-65 592-627 (668)
28 PRK13877 conjugal transfer rel 23.0 2E+02 0.0043 22.2 4.8 35 34-70 74-108 (114)
29 cd08337 DED_c-FLIP_repeat1 Dea 22.2 1.8E+02 0.0038 21.1 4.1 56 83-146 15-74 (80)
30 KOG2996|consensus 22.0 2.6E+02 0.0056 28.1 6.3 44 23-69 166-212 (865)
31 PF12852 Cupin_6: Cupin 21.5 1.8E+02 0.004 23.4 4.6 41 167-211 31-71 (186)
32 PF08375 Rpn3_C: Proteasome re 21.2 68 0.0015 22.6 1.7 11 87-97 14-24 (68)
33 cd08338 DED_PEA15 Death Effect 21.0 1.5E+02 0.0032 21.6 3.5 54 82-140 15-69 (84)
No 1
>KOG3176|consensus
Probab=100.00 E-value=4.1e-55 Score=365.63 Aligned_cols=197 Identities=39% Similarity=0.706 Sum_probs=182.5
Q ss_pred cccCHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466 23 NCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI-EKLRKDDIRIEIHRMEIERIRFVITSYLRVRI 101 (224)
Q Consensus 23 e~~t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i-~~~~~~~~~~~l~~~eleRikyll~sYlR~RL 101 (224)
+++||+++++.|+++|+||||||+||||+.++|+++++||+.|++++ ....+.++++++|+|||||+||+++||+||||
T Consensus 20 ~~~t~~~~le~L~~aW~NEk~APeLLp~~~elve~~ldqIe~~eE~i~~~a~~~dlr~~~~qmELERvkfvlrSYlRcRL 99 (223)
T KOG3176|consen 20 ETLTPEEDLEDLETAWQNEKCAPELLPYALELVERLLDQIEHMEETIERKASNKDLRVSLHQMELERVKFVLRSYLRCRL 99 (223)
T ss_pred eecCcHHHHHHHHHHHhhhccChhhcCChHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999 55666789999999999999999999999999
Q ss_pred HHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHh-hccCCcccccccc----ccCccCCCCCCeEEEE
Q psy2466 102 EKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEE----NKKLIKPDLNTYVFLR 176 (224)
Q Consensus 102 ~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~----~~~i~~P~~d~~Vfvr 176 (224)
+|||+|+.|++..++.|.+..++||+.|++||.+|+..+++||..+ |+.||+++|..++ ..||.+|+++++||++
T Consensus 100 ~KIekf~~~~ln~ee~re~~~~~LS~~E~kfa~~~a~~~~k~~~~~~l~~mp~~~~~~~dkv~~~~~v~~p~~~s~Vf~~ 179 (223)
T KOG3176|consen 100 QKIEKFLQHILNQEELREGALSLLSEEELKFAEEYADILKKHFVDVVLQKMPENLQENDDKVGFVCMVDKPDLDSRVFIK 179 (223)
T ss_pred HHHHhhhHHhhcchhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhhhceeEEEecCCCceeEEEE
Confidence 9999999999999888877789999999999999999999999999 9999998887654 4799999999999999
Q ss_pred ecccCCce-EecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466 177 AGKDVANV-YIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224 (224)
Q Consensus 177 v~~d~g~v-~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI 224 (224)
|+.+..+. .+++ |+. ++|.|||+|++||..|.+||+.|.|.||
T Consensus 180 vn~~~~~~~~~~D-~e~----~el~~gs~~viry~~v~dll~~~~V~Li 223 (223)
T KOG3176|consen 180 VNESVEETVAVPD-DEL----LELTKGSQHVIRYEVVSDLLRDGEVQLI 223 (223)
T ss_pred eccccccceeecC-ccc----ccccccceeeeeHHHHHHHHhcCCeeeC
Confidence 99987654 4555 454 9999999999999999999999999997
No 2
>COG5086 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-39 Score=261.82 Aligned_cols=190 Identities=26% Similarity=0.428 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHh-hccc---chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466 26 SVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIE-KLRK---DDIRIEIHRMEIERIRFVITSYLRVRI 101 (224)
Q Consensus 26 t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~-~~~~---~~~~~~l~~~eleRikyll~sYlR~RL 101 (224)
.|...++.|..+|+|||+||+||||...+|++++++|+.|.+.++ .+.+ +...-.+.++|+||+||+++||+||||
T Consensus 19 ~~~~d~~DL~~~w~NEr~tp~LLPya~~li~r~LdrIs~q~e~v~ia~g~S~a~~~~S~lMetElERvKFvvrsYirtRl 98 (218)
T COG5086 19 MSFPDLNDLILAWQNERSTPRLLPYALHLIDRFLDRISEQTEHVKIALGKSIAKNNESILMETELERVKFVVRSYIRTRL 98 (218)
T ss_pred CCcCCHHHHHHHHhccccCccccCcHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999999999998887 3322 222334579999999999999999999
Q ss_pred HHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHh-hccCCccccccccc----cCccCCCCCCeEEEE
Q psy2466 102 EKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEEN----KKLIKPDLNTYVFLR 176 (224)
Q Consensus 102 ~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~~----~~i~~P~~d~~Vfvr 176 (224)
.||.+|+.|+++++... =.||..|++|..+++....+|++.+ |.-+|..++++++. .|+.+|++++||||-
T Consensus 99 ~Kidk~~~y~~s~~N~L----ilLS~~E~~y~~~Hs~I~~~l~~ds~l~~~p~k~~kv~d~vG~~~m~dePD~nk~Vf~~ 174 (218)
T COG5086 99 KKIDKNLYYDLSDENSL----ILLSGGELAYYEKHSLIYIDLLKDSDLYVTPQKFHKVHDFVGFYCMTDEPDWNKFVFGA 174 (218)
T ss_pred HHhhhhHHHhhcCCcee----eEecchhHHHHHHhhHHHHHHHHhhHHHHhHHHHHHHHhhccceeeecCCCccceeEEE
Confidence 99999999998865432 4899999999999999999999999 99999999998764 799999999999999
Q ss_pred ecccCCc-eEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466 177 AGKDVAN-VYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224 (224)
Q Consensus 177 v~~d~g~-v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI 224 (224)
|++|+.+ ..++. .| .++|.||++|++||+.|.++++.|.|-||
T Consensus 175 VnEdlqEN~~V~e-kE----~~el~kGd~~v~ry~vI~D~Lr~~~V~Li 218 (218)
T COG5086 175 VNEDLQENDTVGE-KE----LLELFKGDFFVARYDVIMDFLRRNEVILI 218 (218)
T ss_pred Ecchhhhccccch-hh----eeeeecCcEEEEEHHHHHHHHhcCceeeC
Confidence 9988753 22222 12 49999999999999999999999999987
No 3
>KOG3303|consensus
Probab=99.96 E-value=3.2e-28 Score=199.38 Aligned_cols=171 Identities=18% Similarity=0.280 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhc--------ccc---hhHHHHHHHHHHHHHHHHHH
Q psy2466 27 VQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKL--------RKD---DIRIEIHRMEIERIRFVITS 95 (224)
Q Consensus 27 ~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~--------~~~---~~~~~l~~~eleRikyll~s 95 (224)
+.+++.++++. ... .|+||++++|+.++++|++...+...+ ++. +..+.+++..++|+|+|+.|
T Consensus 7 g~~Li~d~kr~---~~~--~Lppyn~d~ir~i~~E~~~l~~~~~~i~~~~~~g~~~d~~~~~~~~m~h~~~~RNkRClmA 81 (192)
T KOG3303|consen 7 GLQLILDLKRT---PLG--QLPPYNEDLIRQILEEIDALDARNESIKQKAQSGGSDDNLLPVNYLMMHLSLERNKRCLMA 81 (192)
T ss_pred HHHHHHHHhhC---ccc--cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHhHHHHHH
Confidence 56778888875 211 689999999999999999875554432 111 33566789999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhccccCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc-ccCccCCCCCCeE
Q psy2466 96 YLRVRIEKIEKFTLDIVQQDFERSS-DNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEE-NKKLIKPDLNTYV 173 (224)
Q Consensus 96 YlR~RL~KIe~~~~~il~~~~~~~~-~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~-~~~i~~P~~d~~V 173 (224)
|++.|+..|..++|..+.. .|. .+-.||.+|.+|+++|+.++++|+.+.. +|. ..| .||++.||
T Consensus 82 Y~~~R~~~lr~~~W~~g~~---lps~i~~sls~~E~eyf~~Ys~~La~y~~~~g---------idl~~~~--vPPk~lfI 147 (192)
T KOG3303|consen 82 YVYLRLARLRDLAWSYGLD---LPSSIRFSLSHEEEEYFKNYSNLLAEYMGPLG---------IDLTGDM--VPPKDLFI 147 (192)
T ss_pred HHHHHHHHHHHHHHhcCCC---ccHHHHHhhhHHHHHHHHHHHHHHHHHhcCcc---------chhccCc--CCCccceE
Confidence 9999999999999987632 222 4567999999999999999999977641 222 234 49999999
Q ss_pred EEEecccCCceEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCee
Q psy2466 174 FLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQ 222 (224)
Q Consensus 174 fvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~ 222 (224)
-|||++|+|+|.+++| ++.|.|+|+|++|..+|++||.||.|.
T Consensus 148 ~VR~LkD~Ge~ete~g------~inL~KdS~hfl~r~d~E~LI~qG~v~ 190 (192)
T KOG3303|consen 148 QVRVLKDYGEFETEDG------TINLKKDSQHFLKRTDCERLIAQGFVL 190 (192)
T ss_pred EEEEecccCceeecCC------eEEeeccchhhccHhHHHHHHHccchh
Confidence 9999999999999876 499999999999999999999999765
No 4
>COG5230 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=4.9e-23 Score=165.82 Aligned_cols=164 Identities=13% Similarity=0.210 Sum_probs=126.6
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHH----HHHhhcc------cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy2466 43 LSPEILPNKVEYIDCMLEQIKQME----ENIEKLR------KD--DIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLD 110 (224)
Q Consensus 43 ~aPeLLpy~~~lV~~v~~~I~~~e----e~i~~~~------~~--~~~~~l~~~eleRikyll~sYlR~RL~KIe~~~~~ 110 (224)
.-| |+||..+.|+.+..++++.. +.++..+ +. .....+.....+|+|+||+||.+.|.+.+..++|.
T Consensus 19 Ld~-lp~Y~~d~i~~i~~E~~~ldr~~~eilqeasq~g~~~d~~~~~~y~~m~~~~erNkRcL~aY~~lR~~~L~~~~ws 97 (194)
T COG5230 19 LDP-LPPYRRDEIKAIEGENEHLDRRMEEILQEASQAGSGIDEELSVNYVMMKYFKERNKRCLRAYKFLRSAALFDSFWS 97 (194)
T ss_pred ccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 355 99999999999999998763 3333211 11 22233445556699999999999999999999995
Q ss_pred hhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCCCCeEEEEecccCCceEecCCC
Q psy2466 111 IVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMS 190 (224)
Q Consensus 111 il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~d~~Vfvrv~~d~g~v~l~~~~ 190 (224)
-+..-++ ...-.||.+|.+|+++|+.++..|. ..|..+|.+.. ..||.+.||-|||++|||.|+++.|
T Consensus 98 ~gk~m~s--~~dt~LSh~E~eyl~~Ys~ll~~yk--------g~~~~iDltgs-lvPP~~~FidVrvLkD~G~i~tEyg- 165 (194)
T COG5230 98 KGKRMKS--VGDTMLSHEEEEYLEKYSNLLREYK--------GPFKHIDLTGS-LVPPVQFFIDVRVLKDCGVIMTEYG- 165 (194)
T ss_pred CCcchhh--hhccccchHHHHHHHHHHHHHHHHh--------CCceeeccccc-cCCchheeEEeEeecccchhccccc-
Confidence 3221111 1123499999999999999999973 34555665533 4599999999999999999998876
Q ss_pred CCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466 191 ENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224 (224)
Q Consensus 191 ~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI 224 (224)
+++|.|+++|++|-++|++||.||.+.-|
T Consensus 166 -----~inL~Kdsq~fvr~~dverLI~qGfl~ki 194 (194)
T COG5230 166 -----LINLKKDSQYFVRKNDVERLIDQGFLRKI 194 (194)
T ss_pred -----eEEeeccchhhhhHhHHHHHHHhhhhhcC
Confidence 59999999999999999999999988644
No 5
>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.
Probab=97.82 E-value=2.7e-05 Score=58.12 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhccccCCccCCCCCHHHH
Q psy2466 87 ERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDEL 130 (224)
Q Consensus 87 eRikyll~sYlR~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~ 130 (224)
+|+|+||.+|+++|+.||.+++|++............+||+.|+
T Consensus 65 ~~ik~~l~~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er 108 (108)
T PF05916_consen 65 ERIKRLLRDYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence 99999999999999999999999983111111125689999985
No 6
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=96.33 E-value=0.1 Score=44.95 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy2466 30 VLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR-KDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFT 108 (224)
Q Consensus 30 ~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~-~~~~~~~l~~~eleRikyll~sYlR~RL~KIe~~~ 108 (224)
++++|.++.-.|++.-.|---+.+.=+.+-.-|+.++....+.. ..++...+....+++++...++-..-|+.||-+-|
T Consensus 2 ~i~eLR~~~~kErS~~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~~D~e~~~~~~~~et~~~~~r~ifqrR~~Kiv~~A 81 (223)
T COG1711 2 DIEELRRALYKERSQDGLTEIDEDFYRDVRSFIKELEDEAGRAEEARDIEKYLLTDRIETAKSDARSIFQRRYGKIVSRA 81 (223)
T ss_pred CHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999999999999999999999998887653 34554444445899999999999999999999999
Q ss_pred HHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2466 109 LDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDK 146 (224)
Q Consensus 109 ~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~ 146 (224)
|+=..-. ..+.|+++|++|+....+.+....-+
T Consensus 82 ~~~~~~~-----~~~~Lt~eEk~ly~~l~~~I~~e~~~ 114 (223)
T COG1711 82 IYDVPGE-----TISNLTPEEKELYEDLVNFIEDERIS 114 (223)
T ss_pred HHhcccc-----chhcCCHHHHHHHHHHHHHHhhchhh
Confidence 9844321 14799999999999988888776544
No 7
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=46.00 E-value=29 Score=25.40 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhhH
Q psy2466 169 LNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESI 212 (224)
Q Consensus 169 ~d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I 212 (224)
.+.|.++.|.+..|.+.+++. ...+.+|++.+++=..+
T Consensus 21 h~~~~i~~v~~G~~~~~~~~~------~~~l~~g~~~li~p~~~ 58 (136)
T PF02311_consen 21 HDFYEIIYVLSGEGTLHIDGQ------EYPLKPGDLFLIPPGQP 58 (136)
T ss_dssp T-SEEEEEEEEE-EEEEETTE------EEEE-TT-EEEE-TTS-
T ss_pred CCCEEEEEEeCCEEEEEECCE------EEEEECCEEEEecCCcc
Confidence 457899999999999988764 48999999998875543
No 8
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=39.27 E-value=15 Score=28.48 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=36.9
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeee
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQL 223 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~L 223 (224)
.--+..|++..|.|.+++. .+.+.+|+..++|-.....+...|.+.|
T Consensus 57 ~dE~~~Vl~G~g~v~~~~~------~~~v~~gd~~~iP~g~~H~~~N~G~~~L 103 (127)
T COG0662 57 RDEHWYVLEGTGKVTIGGE------EVEVKAGDSVYIPAGTPHRVRNTGKIPL 103 (127)
T ss_pred cceEEEEEeeEEEEEECCE------EEEecCCCEEEECCCCcEEEEcCCCcce
Confidence 4667788888898888754 4999999999999888777777776443
No 9
>PRK10470 ribosome hibernation promoting factor HPF; Provisional
Probab=36.13 E-value=24 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q psy2466 93 ITSYLRVRIEKIEKFTLDIV 112 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~il 112 (224)
+++|...|+.||++|+..+.
T Consensus 16 l~~~v~~kl~kL~r~~~~i~ 35 (95)
T PRK10470 16 LREFVTAKFAKLEQYFDRIN 35 (95)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 68999999999999997653
No 10
>cd08775 DED_Caspase-like_repeat2 Death effector domain, repeat 2, of initator caspase-like proteins. Death Effector Domain (DED), second repeat, found in initator caspase-like proteins like caspase-8, -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DISC.
Probab=32.46 E-value=31 Score=25.01 Aligned_cols=53 Identities=13% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHH
Q psy2466 83 RMEIERIRFVITSYL-RVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSI 140 (224)
Q Consensus 83 ~~eleRikyll~sYl-R~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll 140 (224)
.-|++.+||+++.|+ ++++.++..+..-+..-. .+..|+|.-..|..+.-..+
T Consensus 16 ~~dl~~lkFL~~d~i~~~kle~~~s~ldlf~~Le-----k~~lL~~~nl~~L~elL~~I 69 (81)
T cd08775 16 RSELRSLKFLLQEEISSCKLDDDMNFLDIVIEME-----NRVLLGPGKVDILKRMLRQL 69 (81)
T ss_pred HHHHHHHHHHCccccccccccccCCHHHHHHHHH-----HcCCCCCccHHHHHHHHHHc
Confidence 458999999999999 666777766543332222 13678887777776654443
No 11
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=32.30 E-value=57 Score=25.41 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEe
Q psy2466 170 NTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILP 208 (224)
Q Consensus 170 d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~ 208 (224)
+.+=||.++.....+. ++++ ..+.+.+|+.+++|
T Consensus 62 ~~~E~chil~G~v~~T-~d~G----e~v~~~aGD~~~~~ 95 (116)
T COG3450 62 DEDEFCHILEGRVEVT-PDGG----EPVEVRAGDSFVFP 95 (116)
T ss_pred ccceEEEEEeeEEEEE-CCCC----eEEEEcCCCEEEEC
Confidence 3466788887654444 3332 36999999999987
No 12
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=32.25 E-value=64 Score=21.23 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=25.4
Q ss_pred eEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 172 YVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 172 ~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
+.++.|++..+.+.+++. ...+.+|+..+++-.
T Consensus 20 ~e~~~vl~G~~~~~~~~~------~~~l~~Gd~~~i~~~ 52 (71)
T PF07883_consen 20 DEFFYVLSGEGTLTVDGE------RVELKPGDAIYIPPG 52 (71)
T ss_dssp EEEEEEEESEEEEEETTE------EEEEETTEEEEEETT
T ss_pred CEEEEEEECCEEEEEccE------EeEccCCEEEEECCC
Confidence 378888888887876543 599999999888754
No 13
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=30.53 E-value=1.7e+02 Score=21.19 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy2466 122 NMYLSHDELKYAKSYLKSIDNHF 144 (224)
Q Consensus 122 ~~~LS~~E~~f~~~y~~ll~~~~ 144 (224)
...|||+|..|...|+.....-|
T Consensus 30 ge~Ls~eE~~FL~~~~~~~ls~F 52 (78)
T PF06384_consen 30 GEKLSPEEEAFLEAHSSASLSQF 52 (78)
T ss_dssp T----HHHHHHHHHTHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhHHHHHH
Confidence 36899999999999987665433
No 14
>COG3022 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.57 E-value=95 Score=27.47 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh--hccCCc
Q psy2466 122 NMYLSHDELKYAKSYLKSIDNHFDKY--LNMLPP 153 (224)
Q Consensus 122 ~~~LS~~E~~f~~~y~~ll~~~~~~~--L~~lp~ 153 (224)
...||+++++|++++..+++.+|+-. ++-||+
T Consensus 91 ~~~L~~~~~~~~q~hl~IlS~LYGvl~~lD~i~p 124 (253)
T COG3022 91 AETLSEKDQAYLQQHLRILSGLYGVLRPLDLIQP 124 (253)
T ss_pred hhhCCHHHHHHHHhhHHHHhhhcccccCCCCCCc
Confidence 47899999999999999999999876 777775
No 15
>cd08813 DED_Caspase_8_repeat2 Death Effector Domain, repeat 2, of Caspase-8. Death effector domain (DED) found in caspase-8 (CASP8, FLICE), repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-10, and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 also plays many important non-apoptotic functions including roles in embryonic development, cell adhesion and motility, immune cell proliferation and differentiation, T-cell activation, and NFkappaB signaling. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the
Probab=27.80 E-value=1.5e+02 Score=21.65 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHH
Q psy2466 83 RMEIERIRFVITSYL-RVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSID 141 (224)
Q Consensus 83 ~~eleRikyll~sYl-R~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~ 141 (224)
.-++..+||+++.|+ |+|+.++..+..-+..-++ ...|+|.-..+.++--..+.
T Consensus 17 ~edL~s~kFLl~~~i~k~kle~~~s~Ldlf~eLEk-----~~~l~~dnl~~L~~il~~i~ 71 (83)
T cd08813 17 RDELKSFKFLLQNELPKSKLDDETTLLDIFIEMEK-----KGILGEDNLDMLKRICAKIN 71 (83)
T ss_pred HHHHhhhHHHhhccccchHHhhhccHHHHHHHHHh-----hCCCCCchHHHHHHHHHHHh
Confidence 458999999999887 5788888776654433322 36788888888877655544
No 16
>KOG3477|consensus
Probab=27.61 E-value=55 Score=24.35 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2466 87 ERIRFVITSYLRVRIEK 103 (224)
Q Consensus 87 eRikyll~sYlR~RL~K 103 (224)
+-.|-+-+.|++|||.+
T Consensus 49 ~eCR~laK~YlqCRMdh 65 (97)
T KOG3477|consen 49 EECRLLAKKYLQCRMDH 65 (97)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34566789999999986
No 17
>KOG4572|consensus
Probab=27.27 E-value=5.5e+02 Score=27.06 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHh-----hccCCccc
Q psy2466 95 SYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-----LNMLPPNL 155 (224)
Q Consensus 95 sYlR~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~-----L~~lp~~l 155 (224)
.-+|-||.+=+=--|+- ... .+-.++|.+|..--..|.+.+.+||-.. ++.+|+.|
T Consensus 499 EiVRRklfike~eEWag-a~s----kd~aqf~eaEekkREqfGk~fkKhFLha~ff~gfDn~P~~f 559 (1424)
T KOG4572|consen 499 EIVRRKLFIKELEEWAG-AHS----KDCAQFSEAEEKKREQFGKKFKKHFLHALFFGGFDNLPEFF 559 (1424)
T ss_pred HHHHHHHHHHHHHHHHH-hhh----hhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccCCHHH
Confidence 45666666533333431 211 1347899999999999999999999654 35666544
No 18
>PF14452 Multi_ubiq: Multiubiquitin
Probab=27.08 E-value=1.7e+02 Score=20.06 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCeEEEEecccCCceEecCCCCCCcceEEe-cCCCEEEEeh
Q psy2466 170 NTYVFLRAGKDVANVYIRDMSENKEDEFVL-DEGSQHILPY 209 (224)
Q Consensus 170 d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L-~kgs~~~l~y 209 (224)
+.++++++..+-..-.|..+ + +|+| .+|.-+++-.
T Consensus 34 ~~~~~~~~~~~~~~~~i~~~-e----~Vdl~~~G~e~fvt~ 69 (72)
T PF14452_consen 34 DEYVYLQIRPGGPDGEIRPG-E----SVDLRKPGMEFFVTA 69 (72)
T ss_pred ccEEEEEEccCCCccEeCCC-C----EEEECCCCeEEEEee
Confidence 37899998866555555554 2 5999 8888887643
No 19
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=26.91 E-value=72 Score=22.75 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCccccccCHHHHHHHHHHHHHhhccCCCCCCCc
Q psy2466 18 ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNK 51 (224)
Q Consensus 18 ~~~~~e~~t~~~~~~~L~~~w~NEk~aPeLLpy~ 51 (224)
++++-|.+||+++++.|++. +|..|.-.
T Consensus 19 ~~Ee~e~lsa~~If~~L~k~------~~~~l~~~ 46 (73)
T PF12990_consen 19 EGEEGEWLSAAEIFERLQKK------SPAALRGS 46 (73)
T ss_pred CCccceeecHHHHHHHHHHh------CccccccC
Confidence 46777889999999999987 66665543
No 20
>cd08340 DED_c-FLIP_repeat2 Death Effector Domain, repeat 2, of cellular FLICE-Inhibitory Protein. Death Effector Domain (DED), repeat 2, similar to that found in cellular FLICE-inhibitory protein (c-FLIP/CASH, also known as Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of the Death Inducing Signalling Complex (DISC). At low levels, c-FLIP has been shown to enhance apoptotic signaling by allosterically activating caspase-8. As a modulator of the initiator caspases, c-FLIP regulates life and death in various types of cells and tissues. All members contain two N-terminal DEDs and a C-terminal pseudo-caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-as
Probab=26.77 E-value=67 Score=23.20 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHH
Q psy2466 82 HRMEIERIRFVITSYL-RVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSI 140 (224)
Q Consensus 82 ~~~eleRikyll~sYl-R~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll 140 (224)
-.-|++-+||+++.|+ +.++.++..+..-+..-++ +..|+|.-..|..+.-..+
T Consensus 15 ~~~dl~~lkFL~~d~i~~~kle~~~s~l~lf~~Lek-----~~~l~~~nl~~L~elL~~I 69 (81)
T cd08340 15 DKSDLRSLIFLLKDLMPSGSKAKDKSFLELVLELEK-----LNLVSPNKVDLLEDCLRNI 69 (81)
T ss_pred CHHHHHHHHHHhhcccccccccccCCHHHHHHHHHh-----cCCCCCccHHHHHHHHHHc
Confidence 3558999999999988 5677777765543333222 3678888777776654443
No 21
>cd00552 RaiA RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).
Probab=26.44 E-value=47 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy2466 93 ITSYLRVRIEKIEKFTLDI 111 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~i 111 (224)
+++|++.|+.||.+|...+
T Consensus 15 l~~~i~~k~~kl~r~~~~i 33 (93)
T cd00552 15 LREYVEEKLEKLEKYFDRI 33 (93)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 6789999999999987543
No 22
>cd08341 DED_Caspase_10_repeat1 Death effector domain, repeat 1, of Caspase-10. Death effector domain (DED) found in caspase-10, repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-10 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-8 and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other m
Probab=26.21 E-value=1.5e+02 Score=21.56 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHH
Q psy2466 82 HRMEIERIRFVITSYL-RVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSID 141 (224)
Q Consensus 82 ~~~eleRikyll~sYl-R~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~ 141 (224)
-.-|++.+||+++.++ +.++.++.+...-+..-. ....|++.-..|..+--..+.
T Consensus 15 ~~~el~~lKFLc~d~i~~~kle~~~s~ldlf~~Le-----~~~~L~~dnl~~L~elL~~I~ 70 (82)
T cd08341 15 GVEDIEALKFLCIDLIPNRKLESVQSGHDLFQHLM-----DEDLLNEEDYFLLAELLYIIK 70 (82)
T ss_pred CHHHHHHHHHHhhhhcccchhhhhCCHHHHHHHHH-----HcCCCCcchHHHHHHHHHHcC
Confidence 3568999999999999 677777776543332221 236788888888777654443
No 23
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=25.67 E-value=2.7e+02 Score=20.32 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=42.4
Q ss_pred cCHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHH-------hhcccchhHHHHHHHHHHHHHHHHHHHH
Q psy2466 25 LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI-------EKLRKDDIRIEIHRMEIERIRFVITSYL 97 (224)
Q Consensus 25 ~t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i-------~~~~~~~~~~~l~~~eleRikyll~sYl 97 (224)
..+..-++.+.+.|...+....-.+--..+-..+...++..+..+ .....++-++.|-..||.|=|-++.+.
T Consensus 11 ~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~- 89 (97)
T PF09177_consen 11 QSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAI- 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHH-
Confidence 345666788888999876555400111112222222333333333 333445566778889998888777763
Q ss_pred HHHHHHH
Q psy2466 98 RVRIEKI 104 (224)
Q Consensus 98 R~RL~KI 104 (224)
|.++..|
T Consensus 90 ~~~i~~~ 96 (97)
T PF09177_consen 90 RNQIKQM 96 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 4445544
No 24
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=25.13 E-value=90 Score=21.73 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=19.7
Q ss_pred CCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEeh
Q psy2466 170 NTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPY 209 (224)
Q Consensus 170 d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y 209 (224)
+.++ .+++ |.+.+.+.+ .....+.+|+.+++|-
T Consensus 26 ~E~~--~vle--G~v~it~~~---G~~~~~~aGD~~~~p~ 58 (74)
T PF05899_consen 26 DEFF--YVLE--GEVTITDED---GETVTFKAGDAFFLPK 58 (74)
T ss_dssp EEEE--EEEE--EEEEEEETT---TEEEEEETTEEEEE-T
T ss_pred CEEE--EEEE--eEEEEEECC---CCEEEEcCCcEEEECC
Confidence 4444 3444 555554421 1359999999999874
No 25
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.88 E-value=2.3e+02 Score=19.25 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHH
Q psy2466 102 EKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKS 139 (224)
Q Consensus 102 ~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~l 139 (224)
++||+-..-++.....+.--..-|++.++.|.+.+...
T Consensus 2 ~~~E~~l~~fv~d~~~~~~~f~pM~~~~R~~vHdla~~ 39 (59)
T cd06006 2 QQIESTLRKFINDKSKRSLRFPPMRSPQRAFIHELAKD 39 (59)
T ss_pred hhHHHHHHHHHhCCCCCceeCCCCCHHHHHHHHHHHHH
Confidence 35555444444433222123477999999999988655
No 26
>PRK10324 translation inhibitor protein RaiA; Provisional
Probab=23.48 E-value=54 Score=25.06 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q psy2466 93 ITSYLRVRIEKIEKFTLDIV 112 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~il 112 (224)
|+.|...|+.||++|+..+.
T Consensus 16 lr~~ie~Kl~kL~k~~~~i~ 35 (113)
T PRK10324 16 IRQHVADRLAKLEKWQTHLI 35 (113)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 68999999999999987653
No 27
>KOG2253|consensus
Probab=23.15 E-value=1.4e+02 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHH
Q psy2466 30 VLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQM 65 (224)
Q Consensus 30 ~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ 65 (224)
+.+.=++.|+|.|..--|=-+...||+.+++.|.++
T Consensus 592 lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h 627 (668)
T KOG2253|consen 592 LMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQH 627 (668)
T ss_pred HHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 455556779999888889999999999999999986
No 28
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=22.96 E-value=2e+02 Score=22.22 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q psy2466 34 IKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIE 70 (224)
Q Consensus 34 L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~ 70 (224)
|...|.|+ .....-+...-|+.++..|+..+..+.
T Consensus 74 LlK~~l~~--~~~~~~~~~~~i~~ll~~i~~~q~~~~ 108 (114)
T PRK13877 74 LLKLWLTD--DVRTAQFGEATILALLGRIEATQDEMS 108 (114)
T ss_pred HHHHHHhC--CCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999 333346677789999999998877664
No 29
>cd08337 DED_c-FLIP_repeat1 Death Effector Domain, repeat 1, of cellular FLICE-Inhibitory Protein. Death Effector Domain (DED), repeat 1, similar to that found in FLICE-inhibitory protein (c-FLIP/CASH, also known as Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of the Death Inducing Signalling Complex (DISC). At low levels, c-FLIP has been shown to enhance apoptotic signaling by allosterically activating caspase-8. As a modulator of the initiator caspases, c-FLIP regulates life and death in various types of cells and tissues. All members contain two N-terminal DEDs and a C-terminal pseudo-caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association
Probab=22.21 E-value=1.8e+02 Score=21.15 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHhhhccccCCccCCCCC---HHHHHHHHHHHHHHHHHHHH
Q psy2466 83 RMEIERIRFVITSYL-RVRIEKIEKFTLDIVQQDFERSSDNMYLS---HDELKYAKSYLKSIDNHFDK 146 (224)
Q Consensus 83 ~~eleRikyll~sYl-R~RL~KIe~~~~~il~~~~~~~~~~~~LS---~~E~~f~~~y~~ll~~~~~~ 146 (224)
.-|++.++|+++.|. +.+..+|...... +.+ +..|+ -.|.=|.=+=..++.++++.
T Consensus 15 s~E~e~L~FLC~D~ip~~~~e~~~~l~~~-L~e-------~~~L~~~~L~ELLy~i~R~DLL~~~l~~ 74 (80)
T cd08337 15 TDEDELLLFLCRDAAPDCTTAQLRDLLRA-LNE-------RGKLTLAALAELLYRVKRFDLLKRILHL 74 (80)
T ss_pred hHHHHHHHHHcccccccccchhHHHHHHH-HHH-------cCCCCHHHHHHHHHHHhHHHHHHHHHCc
Confidence 458999999999999 6677877744433 232 35667 57777777777777776653
No 30
>KOG2996|consensus
Probab=22.02 E-value=2.6e+02 Score=28.10 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=28.1
Q ss_pred cccCHHHHHHHHHHHHHhhccCCCC---CCCchHHHHHHHHHHHHHHHHH
Q psy2466 23 NCLSVQKVLETIKTAWKNEKLSPEI---LPNKVEYIDCMLEQIKQMEENI 69 (224)
Q Consensus 23 e~~t~~~~~~~L~~~w~NEk~aPeL---Lpy~~~lV~~v~~~I~~~ee~i 69 (224)
++--..++++.+.++ |+.++-. ---+.+.=.|++.+|++-|++.
T Consensus 166 ~E~~gdeiYedimk~---e~~sm~~~~l~~te~dkRncClrEi~~TE~kY 212 (865)
T KOG2996|consen 166 EEDEGDEIYEDIMKN---EKPSMPENDLKMTETDKRNCCLREIQQTEEKY 212 (865)
T ss_pred cccccchHHHHHHhc---CCCCCChhhccCCchhhhhhHHHHHHHHHHHH
Confidence 334567888888865 6555532 2234456677888888877653
No 31
>PF12852 Cupin_6: Cupin
Probab=21.46 E-value=1.8e+02 Score=23.39 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCCCCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhh
Q psy2466 167 PDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYES 211 (224)
Q Consensus 167 P~~d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~ 211 (224)
|....-.|..|.+....+.+++++ ..+.|.+|++.++|...
T Consensus 31 ~~~~~~~fh~V~~G~~~l~~~~~~----~~~~L~~GDivllp~g~ 71 (186)
T PF12852_consen 31 PGSPGASFHVVLRGSCWLRVPGGG----EPIRLEAGDIVLLPRGT 71 (186)
T ss_pred cCCCceEEEEEECCeEEEEEcCCC----CeEEecCCCEEEEcCCC
Confidence 445456666777777777776632 25999999999998754
No 32
>PF08375 Rpn3_C: Proteasome regulatory subunit C-terminal; InterPro: IPR013586 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome is a self-compartmentalising protease responsible for the regulated degradation of intracellular proteins in eukaryotes [, ]. This giant intracellular protease is formed by several subunits arranged into two 19S polar caps, where protein recognition and ATP-dependent unfolding occur, flanking a 20S central barrel-shaped structure with an inner proteolytic chamber. This overall structure is highly conserved among eukaryotes and is essential for cell viability. Proteins targeted to the 26S proteasome are conjugated with a polyubiquitin chain by an enzymatic cascade before delivery to the 26S proteasome for degradation into oligopeptides. The 19S component is divided into a "base" subunit containing six ATPases (Rpt proteins) and two non-ATPases (Rpn1, Rpn2), and a "lid" subunit composed of eight stoichiometric proteins (Rpn3, Rpn5, Rpn6, Rpn7, Rpn8, Rpn9, Rpn11, Rpn12) []. Additional non-essential and species specific proteins may also be present. The 19S unit performs several essential functions including binding the specific protein substrates, unfolding them, cleaving the attached ubiquitin chains, opening the 20S subunit, and driving the unfolded polypeptide into the proteolytic chamber for degradation. The 26s proteasome and 19S regulator are of medical interest due to their involvement in burn rehabilitation []. This eukaryotic domain is found at the C terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function []. It occurs together with the PCI/PINT domain (IPR000717 from INTERPRO). ; GO: 0030234 enzyme regulator activity, 0042176 regulation of protein catabolic process, 0000502 proteasome complex
Probab=21.16 E-value=68 Score=22.60 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q psy2466 87 ERIRFVITSYL 97 (224)
Q Consensus 87 eRikyll~sYl 97 (224)
+||+|||.-|=
T Consensus 14 ~RI~FCL~lHn 24 (68)
T PF08375_consen 14 QRIAFCLQLHN 24 (68)
T ss_pred HHHHHHHHHHH
Confidence 69999987653
No 33
>cd08338 DED_PEA15 Death Effector Domain of Astrocyte phosphoprotein PEA-15. Death Effector Domain (DED) similar to that found in PEA-15 (Astrocyte phosphoprotein PEA-15). PEA-15 is a multifunctional phosphoprotein that modulates signaling pathways, like the ERK MAP kinase cascade by binding to ERK and changing its subcellular localization. It has been implicated in apoptosis, cell proliferation, and glucose metabolism. It does not possess enzymatic activity and mainly acts as an adaptor protein. PEA-15 contains an N-terminal DED domain and a C-terminal disordered region. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can
Probab=20.98 E-value=1.5e+02 Score=21.61 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHH
Q psy2466 82 HRMEIERIRFVITSYLR-VRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSI 140 (224)
Q Consensus 82 ~~~eleRikyll~sYlR-~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll 140 (224)
..-+++.+||+++.|+- .++.+|.....-+..-. .+..|++.-..|..+--..+
T Consensus 15 ~~~dl~~lKFLc~d~i~~~kle~~~s~ldlf~~Le-----k~~~L~~dnl~~L~elL~~i 69 (84)
T cd08338 15 TSEDLEQLKSACKDDIPEEKSEEITSGRDWFSFLE-----KHDKLSQDNLSYIEHVFEIS 69 (84)
T ss_pred CHHHHHHHHHHhHhhcccchhhccCCHHHHHHHHH-----HcCCCCCchHHHHHHHHHHc
Confidence 45689999999999984 66777776443222211 13678887777776654443
Done!