Query psy2466
Match_columns 224
No_of_seqs 107 out of 358
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 16:59:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e9x_D GINS complex subunit 4; 100.0 1.2E-62 4.1E-67 421.3 21.1 216 9-224 5-223 (223)
2 2q9q_C DNA replication complex 100.0 3.1E-44 1.1E-48 301.7 15.8 179 30-224 6-194 (196)
3 2e9x_A DNA replication complex 100.0 9.4E-28 3.2E-32 193.3 13.2 134 27-173 6-148 (149)
4 3anw_A GINS51, putative unchar 98.6 3.7E-06 1.3E-10 69.5 18.2 173 31-224 3-184 (188)
5 3anw_B GINS23, putative unchar 97.0 0.0085 2.9E-07 48.6 11.7 113 28-144 55-168 (171)
6 3mlq_A DNA-directed RNA polyme 55.3 12 0.0004 30.4 4.0 55 92-151 132-187 (188)
7 2arc_A ARAC, arabinose operon 51.1 16 0.00056 26.9 4.1 37 169-211 36-72 (164)
8 1m1e_B ICAT; cell adhesion, cy 45.1 44 0.0015 23.4 5.1 24 122-145 30-53 (81)
9 3es4_A Uncharacterized protein 42.2 22 0.00075 26.4 3.5 32 173-209 63-94 (116)
10 3bcw_A Uncharacterized protein 37.1 27 0.00093 25.8 3.3 34 172-210 69-102 (123)
11 2opk_A Hypothetical protein; p 32.2 49 0.0017 23.4 4.0 38 169-210 51-88 (112)
12 3v26_X ORF3, ORF95, probable s 31.1 15 0.00051 26.4 0.9 19 93-111 16-34 (101)
13 1v70_A Probable antibiotics sy 28.7 55 0.0019 21.7 3.6 33 173-211 51-83 (105)
14 4fyl_A Ribosome hibernation pr 28.6 20 0.00068 25.3 1.2 19 93-111 16-34 (95)
15 2e9x_B DNA replication complex 28.5 2.2E+02 0.0076 22.6 8.1 60 86-146 110-169 (185)
16 4i4a_A Similar to unknown prot 28.2 56 0.0019 23.1 3.7 37 170-212 53-89 (128)
17 2gu9_A Tetracenomycin polyketi 27.6 59 0.002 22.0 3.7 35 171-211 44-78 (113)
18 1yhf_A Hypothetical protein SP 27.5 61 0.0021 22.4 3.7 35 171-211 60-94 (115)
19 3lwc_A Uncharacterized protein 26.9 47 0.0016 24.1 3.1 34 171-210 59-92 (119)
20 2ozj_A Cupin 2, conserved barr 26.7 74 0.0025 22.0 4.1 35 170-210 57-91 (114)
21 1o5u_A Novel thermotoga mariti 26.3 60 0.002 22.9 3.5 35 171-210 49-83 (101)
22 1imu_A Hypothetical protein HI 26.3 28 0.00095 25.1 1.6 20 93-112 16-35 (107)
23 4h7l_A Uncharacterized protein 25.1 50 0.0017 25.8 3.1 34 173-212 68-103 (157)
24 2i45_A Hypothetical protein; n 25.1 68 0.0023 22.0 3.6 34 172-210 49-82 (107)
25 2ywq_A Protein Y, ribosomal su 24.3 14 0.00047 26.5 -0.4 20 93-112 17-36 (105)
26 3d82_A Cupin 2, conserved barr 23.5 70 0.0024 21.3 3.3 33 172-210 51-83 (102)
27 2b8m_A Hypothetical protein MJ 23.2 77 0.0026 22.0 3.6 35 171-211 47-82 (117)
28 3fjs_A Uncharacterized protein 22.4 64 0.0022 22.8 3.0 33 172-210 57-89 (114)
29 2pyt_A Ethanolamine utilizatio 22.2 61 0.0021 24.0 3.0 33 172-210 76-108 (133)
30 3fap_B FRAP, FKBP12-rapamycin 21.3 1.9E+02 0.0066 20.4 5.3 51 50-100 21-74 (94)
31 3tqm_A Ribosome-associated fac 20.8 14 0.00047 26.1 -1.0 20 93-112 16-35 (96)
32 3l2h_A Putative sugar phosphat 20.4 86 0.003 23.3 3.6 34 171-210 68-101 (162)
33 2q30_A Uncharacterized protein 20.2 98 0.0034 20.8 3.6 34 174-212 58-91 (110)
34 2pfw_A Cupin 2, conserved barr 20.0 90 0.0031 21.4 3.4 34 171-210 54-87 (116)
No 1
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A*
Probab=100.00 E-value=1.2e-62 Score=421.27 Aligned_cols=216 Identities=35% Similarity=0.703 Sum_probs=181.9
Q ss_pred ccccCCCCCCCccccccCHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q psy2466 9 FDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIER 88 (224)
Q Consensus 9 ~~~~~~~~~~~~~~e~~t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~~~~~~~l~~~eleR 88 (224)
-|+.++++++++++|.+|++++++.|+++|+||++||+||||++++|++++++|+.|++++..+.++++++.+||+||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~t~~~~~~~L~~~w~nE~~aPeLlpy~~~lv~~v~~~i~~~~e~i~~~~~~~~~l~i~~~eleR 84 (223)
T 2e9x_D 5 VDFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMER 84 (223)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHCSSCCCCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHH
T ss_pred hhhhhccccCCccccccChHHHHHHHHHHHHcccCCCcccCcchHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHH
Confidence 46777777888888899999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhccccCCccC-CCCCHHHHHHHHHHHHHHHHHHHHh-hccCCccccccccccCccC
Q psy2466 89 IRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDN-MYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIK 166 (224)
Q Consensus 89 ikyll~sYlR~RL~KIe~~~~~il~~~~~~~~~~-~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~~~~i~~ 166 (224)
+||||+||||+||+||++|+||++..+..+.+.. ++||++|++||++|+.++++||.++ |++||+.++++|.+.|+++
T Consensus 85 ~k~~l~sYlR~RL~KIe~~~~~~~~~~~~r~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~P~~~~~ld~~~m~~~ 164 (223)
T 2e9x_D 85 IRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPK 164 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGCCCCHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHhhhhhhCCHhhhccCccccccC
Confidence 9999999999999999999999998765543444 8999999999999999999999999 9999999999999899999
Q ss_pred CCCCCeEEEEecccCCceEecCCC-CCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466 167 PDLNTYVFLRAGKDVANVYIRDMS-ENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224 (224)
Q Consensus 167 P~~d~~Vfvrv~~d~g~v~l~~~~-~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI 224 (224)
||++.||||||++|+|+|.+++++ +.++.+++|.||++|++||++|++||.+|.|+||
T Consensus 165 P~~d~~VfvRvl~d~g~v~~~~~~g~~~~~~i~L~kgs~~~vry~~ve~LI~~G~velI 223 (223)
T 2e9x_D 165 PDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223 (223)
T ss_dssp CCTTCEEEEEESSCEEEEEECCSSCGGGCEEEEECTTCEEEEEHHHHHHHHHHTSEEEC
T ss_pred CCCCCeEEEEEeeccCeEEeCCCCCCccceeEEEccCCEEEEEHHHHHHHHHcCCEEeC
Confidence 999999999999999999998752 2233579999999999999999999999999997
No 2
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=301.67 Aligned_cols=179 Identities=17% Similarity=0.230 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhccCC-CCCCCchHHHHHHHHHHHHHHHHHhhcc---------cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2466 30 VLETIKTAWKNEKLSP-EILPNKVEYIDCMLEQIKQMEENIEKLR---------KDDIRIEIHRMEIERIRFVITSYLRV 99 (224)
Q Consensus 30 ~~~~L~~~w~NEk~aP-eLLpy~~~lV~~v~~~I~~~ee~i~~~~---------~~~~~~~l~~~eleRikyll~sYlR~ 99 (224)
.++.++.+|.+ +| +||||++++|++++++|+.|++++..+. ...+.+.++|++|+|+||||+||||+
T Consensus 6 a~~Ll~el~r~---~~~~L~py~~dlv~~v~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~R~Kr~l~aYlr~ 82 (196)
T 2q9q_C 6 AMELIRELHRA---PEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYD 82 (196)
T ss_dssp HHHHHHHHHTS---CTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556543 45 9999999999999999999998875332 24578999999999999999999999
Q ss_pred HHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCCCCeEEEEecc
Q psy2466 100 RIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGK 179 (224)
Q Consensus 100 RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~d~~Vfvrv~~ 179 (224)
|++||++|+|+++..- .+...++|||+|++||++|++++++|+.+...+ .++|.+. ..+||+|.||||||++
T Consensus 83 Rl~KI~~~~w~~~~~l--~~~~~~~LS~~E~~y~~~y~~ll~~y~~~~~~~-----~~ldlt~-~~~Pp~d~~V~VRvl~ 154 (196)
T 2q9q_C 83 RLLRIRALRWEYGSIL--PNALRFHMAAEEMEWFNNYKRSLATYMRSLGGD-----EGLDITQ-DMKPPKSLYIEVRCLK 154 (196)
T ss_dssp HHHHHHHHHHHTCSSC--CHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSSS-----SCCCTTS-CCSCCCC---------
T ss_pred HHHHHHHHHHHhcccC--CHHHHhhCCHHHHHHHHHHHHHHHHHHHhcccc-----cCcCccC-CCCCCCCCeEEEEEec
Confidence 9999999999987421 112468999999999999999999999876211 1345443 3589999999999999
Q ss_pred cCCceEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466 180 DVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224 (224)
Q Consensus 180 d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI 224 (224)
|+|+|.+++| + +|+|.||++|++||++|++||.+|.|++|
T Consensus 155 d~gev~~~~g-~----~v~L~kgs~~~lr~~~ve~LI~~G~leli 194 (196)
T 2q9q_C 155 DYGEFEVDDG-T----SVLLKKNSQHFLPRWKCEQLIRQGVLEHI 194 (196)
T ss_dssp ---------------------------------------------
T ss_pred ccCeEEecCC-C----EEEEeeCCEEEEEHHHHHHHHHCCceecc
Confidence 9999998776 2 49999999999999999999999999986
No 3
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=99.95 E-value=9.4e-28 Score=193.35 Aligned_cols=134 Identities=14% Similarity=0.192 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcc---------cchhHHHHHHHHHHHHHHHHHHHH
Q psy2466 27 VQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR---------KDDIRIEIHRMEIERIRFVITSYL 97 (224)
Q Consensus 27 ~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~---------~~~~~~~l~~~eleRikyll~sYl 97 (224)
|.+++++++++ + +|+||||++++|++|+++|+.+++++..+. ...+.+.+++++|+|+||||+||+
T Consensus 6 a~~Ll~el~rs---~--~~~Lppy~~dlVr~v~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~RnKrcLlAYl 80 (149)
T 2e9x_A 6 AMELIRELHRA---P--EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYL 80 (149)
T ss_dssp HHHHHHHHHHS---C--TTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---C--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554 4 899999999999999999999998876531 135678899999999999999999
Q ss_pred HHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCCCCeE
Q psy2466 98 RVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYV 173 (224)
Q Consensus 98 R~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~d~~V 173 (224)
|+|++||++++|+++..- .+..+++|||+|++|+++|++++.+|+.+..+.. ++|.+.. .+||++.||
T Consensus 81 ~~Rl~kI~~~~w~~g~~L--~~~~~~~LS~~E~~f~~~Y~~lL~~y~~~~~~~~-----~ldlt~~-l~PPk~l~i 148 (149)
T 2e9x_A 81 YDRLLRIRALRWEYGSVL--PNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDE-----GLDITQD-MKPPKSLYI 148 (149)
T ss_dssp HHHHHHHHHHHHHHCSSC--CHHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS-----CCCTTSC-CSCCC----
T ss_pred HHHHHHHHHHHHHccccC--ChHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccc-----ccCCCCC-CCCCCcccC
Confidence 999999999999986521 1125689999999999999999999988631111 1344333 369999997
No 4
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=98.63 E-value=3.7e-06 Score=69.54 Aligned_cols=173 Identities=13% Similarity=0.174 Sum_probs=123.1
Q ss_pred HHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy2466 31 LETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK--DDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFT 108 (224)
Q Consensus 31 ~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~--~~~~~~l~~~eleRikyll~sYlR~RL~KIe~~~ 108 (224)
+++|...|.+|+.++.|.+-+.+.-+.+-+-|..++..+..... ..+...++..++++++..+.+-.+.|+.||=+.+
T Consensus 3 i~eL~~il~~Er~s~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~~a 82 (188)
T 3anw_A 3 IVKLRELLEAELSSTDLNELDEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIVDLA 82 (188)
T ss_dssp HHHHHHHHHHHHTCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998888888888888887765443 2344566788999999999999999999999998
Q ss_pred HHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCcc-cc-cccc-ccC---ccCCCCCCeEEEEecccCC
Q psy2466 109 LDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPN-LR-TLEE-NKK---LIKPDLNTYVFLRAGKDVA 182 (224)
Q Consensus 109 ~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~-l~-~ld~-~~~---i~~P~~d~~Vfvrv~~d~g 182 (224)
.. ...++|+++|+.++......+..+-.. +|.. .. +... ... -+.+..+.|| ++.|.+
T Consensus 83 ~~---------~~~~~Lt~EEk~l~~~l~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---v~~d~p 146 (188)
T 3anw_A 83 VE---------GKIAEMTAEEKRLFNVIRAFIEREELP----EISEEVQPQEESEAEAEYRSKEVPKEAYI---IQIDLP 146 (188)
T ss_dssp HH---------TEECCCCHHHHHHHHHHHHHHTTCCCC----CC---------------CCCCCCCEEEEE---ECSCBC
T ss_pred hh---------hhhhhCCHHHHHHHHHHHHHHHhcccc----ccccccccccccccccccccccCcCcceE---EEeCCC
Confidence 21 134799999999998876666442110 1110 00 0000 000 0111122344 389999
Q ss_pred ceEecCCCCCCcceEE-ecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466 183 NVYIRDMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224 (224)
Q Consensus 183 ~v~l~~~~~~~~~~v~-L~kgs~~~l~y~~I~~Lv~~G~v~LI 224 (224)
.|.-.++ .... |.+|++..+|......|+..|.++.|
T Consensus 147 ~i~~~d~-----r~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~i 184 (188)
T 3anw_A 147 AVLGPDM-----KEYGPFMAGDMAIIPTVIGRALVEREAARRV 184 (188)
T ss_dssp CEECTTS-----CEECCBCTTCEEEEEHHHHHHHHTTTSEEEC
T ss_pred ceecCCc-----CcccCCCcccEEeecHHHHHHHHhCCCeEEe
Confidence 8873332 2477 99999999999999999999998754
No 5
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=97.05 E-value=0.0085 Score=48.59 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466 28 QKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRI-EIHRMEIERIRFVITSYLRVRIEKIEK 106 (224)
Q Consensus 28 ~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~~~~~~-~l~~~eleRikyll~sYlR~RL~KIe~ 106 (224)
..++.+|.+.-.-||.++.|-+-+.+.=.++..-|..+++.+...++.+... ...-.++.+.+..+++-.+.|+.||=+
T Consensus 55 ~~~I~eL~~il~eEr~~~~L~~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~ 134 (171)
T 3anw_B 55 DKIIGEIDKVIAEERESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDLKLIRFNKILK 134 (171)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777998888888888888999999999998887665433221 111167999999999999999999999
Q ss_pred hHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHH
Q psy2466 107 FTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHF 144 (224)
Q Consensus 107 ~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~ 144 (224)
.+..- +.. ....++|||+|+.++..-...+..++
T Consensus 135 la~~~---~~~-~eil~rLTpEEk~iy~~l~~~i~~w~ 168 (171)
T 3anw_B 135 AVMLR---PNS-LELLSRLAPEERRIYLQMSKIRNEWL 168 (171)
T ss_dssp HHTC-----CC-HHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcC---CCc-HHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 99431 110 02468999999999999988887764
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=55.31 E-value=12 Score=30.44 Aligned_cols=55 Identities=11% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHh-hccC
Q psy2466 92 VITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-LNML 151 (224)
Q Consensus 92 ll~sYlR~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~-L~~l 151 (224)
+|..=+|..|.|+||+...=++.. +...|+|.-..-.+-+...++++|.++ |.++
T Consensus 132 ll~~q~r~gl~r~ek~~~e~~~~~-----~~~~~~~~~l~n~kp~~~~ik~ff~ss~Lsqf 187 (188)
T 3mlq_A 132 LMADQFRVGLARLARGVRERMVMG-----SPDTLTPAKLVNSRPLEAALREFFSRSQLSQF 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-----CGGGCCHHHHCCCHHHHHHHHHHHHTCEECCC
T ss_pred eeEEehhhHHHHHHHHHHhhhccc-----cccccCcccchhhHHHHHHHHHhhcccccccC
Confidence 455557888999999887544442 347899999999999999999999998 8754
No 7
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=51.09 E-value=16 Score=26.93 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhh
Q psy2466 169 LNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYES 211 (224)
Q Consensus 169 ~d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~ 211 (224)
.+.|.++.|.+..|.+.+++. ...+.+|++++++-..
T Consensus 36 h~~~~i~~v~~G~~~~~i~~~------~~~l~~Gd~~~i~p~~ 72 (164)
T 2arc_A 36 MKGYILNLTIRGQGVVKNQGR------EFVCRPGDILLFPPGE 72 (164)
T ss_dssp CSSEEEEEEEEECEEEEETTE------EEEECTTCEEEECTTC
T ss_pred CCceEEEEEEEeEEEEEECCE------EEEecCCeEEEEcCCC
Confidence 567899999999999988654 4788888888877544
No 8
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=45.07 E-value=44 Score=23.42 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q psy2466 122 NMYLSHDELKYAKSYLKSIDNHFD 145 (224)
Q Consensus 122 ~~~LS~~E~~f~~~y~~ll~~~~~ 145 (224)
...|||+|..|++.|+.....-|.
T Consensus 30 Ge~Ls~eE~~FL~~~~~~~ls~Fe 53 (81)
T 1m1e_B 30 GSNLTASEEEFLRTYAGVVNSQLS 53 (81)
T ss_dssp TCCCCHHHHHHHHHTHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhhhHHHHHH
Confidence 478999999999999887644443
No 9
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=42.23 E-value=22 Score=26.44 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=23.6
Q ss_pred EEEEecccCCceEecCCCCCCcceEEecCCCEEEEeh
Q psy2466 173 VFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPY 209 (224)
Q Consensus 173 Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y 209 (224)
=||.+++....|..++| + .+++.+|+.+++|-
T Consensus 63 E~~~iLeG~~~lt~ddG-~----~~~l~aGD~~~~P~ 94 (116)
T 3es4_A 63 ETFVVVEGEALYSQADA-D----PVKIGPGSIVSIAK 94 (116)
T ss_dssp EEEEEEECCEEEEETTC-C----CEEECTTEEEEECT
T ss_pred EEEEEEEeEEEEEeCCC-e----EEEECCCCEEEECC
Confidence 57778877666665544 2 49999999999874
No 10
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=37.14 E-value=27 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=23.7
Q ss_pred eEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 172 YVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 172 ~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
-=||.|++....+.++++ ..+.|.+|+.+++|-.
T Consensus 69 ~E~~~Vl~G~~~l~~~~g-----~~~~l~~GD~~~ip~g 102 (123)
T 3bcw_A 69 IEYCHIIEGEARLVDPDG-----TVHAVKAGDAFIMPEG 102 (123)
T ss_dssp EEEEEEEEEEEEEECTTC-----CEEEEETTCEEEECTT
T ss_pred cEEEEEEEEEEEEEECCC-----eEEEECCCCEEEECCC
Confidence 456667776666665443 2599999999998753
No 11
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=32.16 E-value=49 Score=23.45 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=28.2
Q ss_pred CCCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 169 LNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 169 ~d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
.+..-++.|++..+.+.++++. ..+.|.+|+..++|-.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~----~~~~l~~Gd~i~ipa~ 88 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT----APRVMRPGDWLHVPAH 88 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS----SCEEECTTEEEEECTT
T ss_pred CCccEEEEEEeCeEEEEECCEE----EEEEECCCCEEEECCC
Confidence 3567888889888888886641 0178999999998854
No 12
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=31.15 E-value=15 Score=26.43 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy2466 93 ITSYLRVRIEKIEKFTLDI 111 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~i 111 (224)
|++|+..+|.|+++|+..+
T Consensus 16 lr~~ve~Kl~kL~k~~d~i 34 (101)
T 3v26_X 16 LREFVTAKFAKLEQYFDRI 34 (101)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 6899999999999998654
No 13
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=28.71 E-value=55 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=24.1
Q ss_pred EEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhh
Q psy2466 173 VFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYES 211 (224)
Q Consensus 173 Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~ 211 (224)
-++.|++..+.+.+++. ...+.+|+..+++-..
T Consensus 51 e~~~v~~G~~~~~~~~~------~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 51 KVYYALEGEVVVRVGEE------EALLAPGMAAFAPAGA 83 (105)
T ss_dssp EEEEEEESCEEEEETTE------EEEECTTCEEEECTTS
T ss_pred EEEEEEeCEEEEEECCE------EEEeCCCCEEEECCCC
Confidence 46678887777777543 4888999988887543
No 14
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=28.61 E-value=20 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy2466 93 ITSYLRVRIEKIEKFTLDI 111 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~i 111 (224)
|++|...+|.||++|+..+
T Consensus 16 l~~~v~~Kl~kl~k~~~~i 34 (95)
T 4fyl_A 16 MQDYVHSKFDKLERFFDHI 34 (95)
T ss_dssp HHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 6899999999999987654
No 15
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=28.51 E-value=2.2e+02 Score=22.59 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2466 86 IERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDK 146 (224)
Q Consensus 86 leRikyll~sYlR~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~ 146 (224)
.+.+|.++..-..+|+.||.+-...+...+... -...+||.-|....+.+..-.-+.+..
T Consensus 110 ~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~-~~l~nls~mEin~iR~f~~~~~~~l~~ 169 (185)
T 2e9x_B 110 ADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAH-AKLDNLTLMEINTSGTFLTQALNHMYK 169 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE-EECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce-EEeCCccHHHHHHhHHHHHHHHHHHHH
Confidence 468999999999999999999887765422110 124789999999999986555554443
No 16
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=28.22 E-value=56 Score=23.08 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=27.5
Q ss_pred CCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhhH
Q psy2466 170 NTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESI 212 (224)
Q Consensus 170 d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I 212 (224)
+.+-++.|++..|.+.+++. ...+.+|++.+++-..+
T Consensus 53 ~~~Ei~~v~~G~~~~~i~~~------~~~l~~Gd~~~i~~~~~ 89 (128)
T 4i4a_A 53 NEYELFIVIQGNAIIRINDE------DFPVTKGDLIIIPLDSE 89 (128)
T ss_dssp SSEEEEEEEESEEEEEETTE------EEEEETTCEEEECTTCC
T ss_pred CCeEEEEEEeCEEEEEECCE------EEEECCCcEEEECCCCc
Confidence 45777778888888887553 48889999888876543
No 17
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=27.64 E-value=59 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=26.4
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYES 211 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~ 211 (224)
.+-++.|++..+.+.+++. ...|.+|+..+++-..
T Consensus 44 ~~e~~~vl~G~~~~~~~~~------~~~l~~Gd~~~i~~~~ 78 (113)
T 2gu9_A 44 ADQWLFVVDGAGEAIVDGH------TQALQAGSLIAIERGQ 78 (113)
T ss_dssp CEEEEEEEECCEEEEETTE------EEEECTTEEEEECTTC
T ss_pred CcEEEEEEeCEEEEEECCE------EEEeCCCCEEEECCCC
Confidence 5677888888888887543 4888888888887543
No 18
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=27.49 E-value=61 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=25.5
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehhh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYES 211 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~ 211 (224)
.+-++.|++..+.+.+++. ...+.+|+..+++-..
T Consensus 60 ~~e~~~vl~G~~~~~~~~~------~~~l~~Gd~~~ip~~~ 94 (115)
T 1yhf_A 60 GDAMVTILSGLAEITIDQE------TYRVAEGQTIVMPAGI 94 (115)
T ss_dssp SEEEEEEEESEEEEEETTE------EEEEETTCEEEECTTS
T ss_pred CcEEEEEEeCEEEEEECCE------EEEECCCCEEEECCCC
Confidence 4677778888777777543 4888888888887543
No 19
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=26.95 E-value=47 Score=24.09 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=23.1
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
.-=++.|++..+.+.+++ ..+.|.+|+..++|-.
T Consensus 59 ~~E~~~Vl~G~~~~~~~g------~~~~l~~GD~v~ip~g 92 (119)
T 3lwc_A 59 VDDVMIVLEGRLSVSTDG------ETVTAGPGEIVYMPKG 92 (119)
T ss_dssp SEEEEEEEEEEEEEEETT------EEEEECTTCEEEECTT
T ss_pred CCEEEEEEeCEEEEEECC------EEEEECCCCEEEECCC
Confidence 345566677666676632 2588999999888754
No 20
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=26.70 E-value=74 Score=22.00 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=25.8
Q ss_pred CCeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 170 NTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 170 d~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
+..-++.|++..+.+.+++. ...|.+|+..+++-.
T Consensus 57 ~~~e~~~vl~G~~~~~i~~~------~~~l~~Gd~i~i~~~ 91 (114)
T 2ozj_A 57 FGDTLYLILQGEAVITFDDQ------KIDLVPEDVLMVPAH 91 (114)
T ss_dssp SSCEEEEEEEEEEEEEETTE------EEEECTTCEEEECTT
T ss_pred CCCeEEEEEeCEEEEEECCE------EEEecCCCEEEECCC
Confidence 34667788888888877543 488999998887643
No 21
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=26.32 E-value=60 Score=22.89 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=25.3
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
..-++.|++..+.+.++++ ....|.+|+..+++-.
T Consensus 49 ~~E~~~Vl~G~~~~~i~~g-----~~~~l~~GD~i~ip~g 83 (101)
T 1o5u_A 49 TNETCYILEGKVEVTTEDG-----KKYVIEKGDLVTFPKG 83 (101)
T ss_dssp SCEEEEEEEEEEEEEETTC-----CEEEEETTCEEEECTT
T ss_pred ceEEEEEEeCEEEEEECCC-----CEEEECCCCEEEECCC
Confidence 4567777888777877533 2489999999888743
No 22
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=26.26 E-value=28 Score=25.07 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q psy2466 93 ITSYLRVRIEKIEKFTLDIV 112 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~il 112 (224)
|+.|+..+|.|+++|+..+.
T Consensus 16 lr~~v~~kl~kL~r~~~~i~ 35 (107)
T 1imu_A 16 IREHLEERLAKLGKWQTQLI 35 (107)
T ss_dssp HHHHHHHHHHHHHTSSCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 68999999999999986543
No 23
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=25.09 E-value=50 Score=25.81 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=24.7
Q ss_pred EEEEecc--cCCceEecCCCCCCcceEEecCCCEEEEehhhH
Q psy2466 173 VFLRAGK--DVANVYIRDMSENKEDEFVLDEGSQHILPYESI 212 (224)
Q Consensus 173 Vfvrv~~--d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I 212 (224)
=++.|++ ..|.+.+++. ...+.+|+..++|-...
T Consensus 68 E~~yVLe~~G~g~v~idge------~~~l~~GD~v~IPpg~~ 103 (157)
T 4h7l_A 68 EIYVVLDHAAHATIELNGQ------SYPLTKLLAISIPPLVR 103 (157)
T ss_dssp EEEEEEEECTTCEEEETTE------EEECCTTEEEEECTTCC
T ss_pred EEEEEEecCcEEEEEECCE------EEEeCCCCEEEECCCCe
Confidence 4667788 8888888653 47888888888775543
No 24
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.06 E-value=68 Score=21.96 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=24.1
Q ss_pred eEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 172 YVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 172 ~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
.-++.|++..+.+.++++ ....|.+|+..++|-.
T Consensus 49 ~E~~~Vl~G~~~~~~~~~-----~~~~l~~Gd~~~ip~~ 82 (107)
T 2i45_A 49 DKVLFAVEGDMAVDFADG-----GSMTIREGEMAVVPKS 82 (107)
T ss_dssp CEEEEESSSCEEEEETTS-----CEEEECTTEEEEECTT
T ss_pred CEEEEEEeCEEEEEECCC-----cEEEECCCCEEEECCC
Confidence 566778888777777662 1478888888877743
No 25
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=24.33 E-value=14 Score=26.50 Aligned_cols=20 Identities=10% Similarity=0.489 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q psy2466 93 ITSYLRVRIEKIEKFTLDIV 112 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~il 112 (224)
|++|+..++.|+++|+..+.
T Consensus 17 l~~~v~~kl~kL~r~~~~i~ 36 (105)
T 2ywq_A 17 IRDYVEKKLARLDRYQDGEL 36 (105)
T ss_dssp HHHHHHHHHHGGGGSCSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCe
Confidence 68999999999999987653
No 26
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=23.48 E-value=70 Score=21.28 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=24.4
Q ss_pred eEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 172 YVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 172 ~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
+-++.|++..+.+.+++. ...+.+|++.+++-.
T Consensus 51 ~e~~~v~~G~~~~~~~~~------~~~l~~Gd~~~ip~~ 83 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQ------NITLQAGEMYVIPKG 83 (102)
T ss_dssp CEEEEEEESEEEEECSSC------EEEEETTEEEEECTT
T ss_pred cEEEEEEeCEEEEEECCE------EEEEcCCCEEEECCC
Confidence 677778887777777543 488888888888754
No 27
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=23.21 E-value=77 Score=22.02 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=25.3
Q ss_pred CeEEEEecccCCceEecCCCCCCcceE-EecCCCEEEEehhh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEF-VLDEGSQHILPYES 211 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v-~L~kgs~~~l~y~~ 211 (224)
..-++.|++..+.+.+++. .. .|.+|+..+++-..
T Consensus 47 ~~e~~~Vl~G~~~~~i~~~------~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 47 SYVHLIIIKGEMTLTLEDQ------EPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp SCEEEEEEESEEEEEETTS------CCEEEETTCEEEECTTC
T ss_pred CcEEEEEEeCEEEEEECCE------EEEEeCCCCEEEECCCC
Confidence 4566778888888887654 26 88888888887544
No 28
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=22.43 E-value=64 Score=22.78 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=25.3
Q ss_pred eEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 172 YVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 172 ~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
..++.|++..+.+.+++. ...|.+|+..+++-.
T Consensus 57 ~e~~~Vl~G~~~~~i~~~------~~~l~~Gd~i~ip~~ 89 (114)
T 3fjs_A 57 PSTIQCLEGEVEIGVDGA------QRRLHQGDLLYLGAG 89 (114)
T ss_dssp CEEEEEEESCEEEEETTE------EEEECTTEEEEECTT
T ss_pred cEEEEEEECEEEEEECCE------EEEECCCCEEEECCC
Confidence 477888888888887553 488889988888754
No 29
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=22.22 E-value=61 Score=24.04 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=21.3
Q ss_pred eEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 172 YVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 172 ~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
-=|+.|++....+.+++ ..+.|.+|+.++++-.
T Consensus 76 ~E~~~VLeG~~~l~~~g------~~~~l~~GD~i~~p~g 108 (133)
T 2pyt_A 76 DEIDMVLEGELHVRHEG------ETMIAKAGDVMFIPKG 108 (133)
T ss_dssp EEEEEEEEEEEEEEETT------EEEEEETTCEEEECTT
T ss_pred CEEEEEEECEEEEEECC------EEEEECCCcEEEECCC
Confidence 34555666555555542 2488999998888743
No 30
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=21.29 E-value=1.9e+02 Score=20.43 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhcccchh---HHHHHHHHHHHHHHHHHHHHHHH
Q psy2466 50 NKVEYIDCMLEQIKQMEENIEKLRKDDI---RIEIHRMEIERIRFVITSYLRVR 100 (224)
Q Consensus 50 y~~~lV~~v~~~I~~~ee~i~~~~~~~~---~~~l~~~eleRikyll~sYlR~R 100 (224)
|.+.=+..++..+..+.+.++.-+.+.. ...-+.-+|...+-++..|.+++
T Consensus 21 f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L~~A~~~~~~y~~t~ 74 (94)
T 3fap_B 21 FGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSG 74 (94)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333366777777777777765444421 12456779999999999999986
No 31
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=20.75 E-value=14 Score=26.14 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q psy2466 93 ITSYLRVRIEKIEKFTLDIV 112 (224)
Q Consensus 93 l~sYlR~RL~KIe~~~~~il 112 (224)
|++|+..++.|+++|+..+.
T Consensus 16 l~~~v~~kl~kL~k~~~~i~ 35 (96)
T 3tqm_A 16 LRELTEKKLHRIQPCRDEIS 35 (96)
T ss_dssp HHHHHHHHHTTCCSSGGGCC
T ss_pred HHHHHHHHHHHHHHhcCCCe
Confidence 68899999999999987654
No 32
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=20.43 E-value=86 Score=23.33 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=25.7
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
..-++.|++..+.+.+++. ...|.+|+..+++-.
T Consensus 68 ~~E~~~Vl~G~~~~~~~~~------~~~l~~Gd~i~i~~~ 101 (162)
T 3l2h_A 68 EEEAVYVLSGKGTLTMEND------QYPIAPGDFVGFPCH 101 (162)
T ss_dssp CCEEEEEEESCEEEEETTE------EEEECTTCEEEECTT
T ss_pred CCEEEEEEEEEEEEEECCE------EEEeCCCCEEEECCC
Confidence 4567778888888877553 488999999888764
No 33
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=20.22 E-value=98 Score=20.83 Aligned_cols=34 Identities=6% Similarity=-0.064 Sum_probs=23.8
Q ss_pred EEEecccCCceEecCCCCCCcceEEecCCCEEEEehhhH
Q psy2466 174 FLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESI 212 (224)
Q Consensus 174 fvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I 212 (224)
++.|++..+.+.++++ ....|.+|+..+++-...
T Consensus 58 ~~~vl~G~~~~~~~~~-----~~~~l~~Gd~~~ip~~~~ 91 (110)
T 2q30_A 58 NIVVLEGEGEFVGDGD-----AVIPAPRGAVLVAPISTP 91 (110)
T ss_dssp EEEEEESCEEEECGGG-----CEEEECTTEEEEEETTSC
T ss_pred EEEEEeCEEEEEeCCC-----EEEEECCCCEEEeCCCCc
Confidence 3677887777777522 148899999888885543
No 34
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=20.02 E-value=90 Score=21.45 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=23.3
Q ss_pred CeEEEEecccCCceEecCCCCCCcceEEecCCCEEEEehh
Q psy2466 171 TYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYE 210 (224)
Q Consensus 171 ~~Vfvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~ 210 (224)
..-++.|++..+.+.+++. ...+.+|+.++++-.
T Consensus 54 ~~e~~~vl~G~~~~~~~~~------~~~l~~Gd~~~ip~~ 87 (116)
T 2pfw_A 54 HSQVSYVVEGEFHVNVDGV------IKVLTAGDSFFVPPH 87 (116)
T ss_dssp SEEEEEEEEECEEEEETTE------EEEECTTCEEEECTT
T ss_pred cceEEEEEeeEEEEEECCE------EEEeCCCCEEEECcC
Confidence 3456667777777776442 488888888887744
Done!