RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2466
(224 letters)
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A
{Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B*
2eho_A*
Length = 223
Score = 170 bits (432), Expect = 1e-53
Identities = 75/218 (34%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Query: 10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
D + + +E L+ +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct: 6 DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65
Query: 70 EKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHD 128
+ +++D+++ IH+ME+ERIR+V++SYLR R+ KIEKF +++++ R + LS +
Sbjct: 66 RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125
Query: 129 ELKYAKSYLKSIDNHFDK-YLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
EL +A+ ++ + +++ L +PPNL+ ++ + + KPDL++YVFLR + N+ +
Sbjct: 126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185
Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
++ + D + L++GSQH++ Y++IA V + VQL+
Sbjct: 186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix
bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Length = 196
Score = 76.1 bits (187), Expect = 2e-17
Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 22/190 (11%)
Query: 44 SPEILPNKVEYIDCMLEQIKQMEENIEKL---------RKDDIRIEIHRMEIERIRFVIT 94
++ + + +LE++K + E + I+ + R R
Sbjct: 18 EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTV 77
Query: 95 SYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPN 154
+YL R+ +I + +M + +E+++ +Y +S+ + +
Sbjct: 78 AYLYDRLLRIRALRWEYGSILPNALRFHM--AAEEMEWFNNYKRSLATYMRSLGGDEGLD 135
Query: 155 LRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAE 214
+ + +KP + Y+ +R KD + D +L + SQH LP +
Sbjct: 136 IT------QDMKPPKSLYIEVRCLKDYGEFEVDD-----GTSVLLKKNSQHFLPRWKCEQ 184
Query: 215 FVKNNDVQLL 224
++ ++ +
Sbjct: 185 LIRQGVLEHI 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 2e-07
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 32 ETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK-DDIRIEIHRMEIERIR 90
ET + ++ + + V+ DC + ++ M ++I + D I + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDA--VSGTL 65
Query: 91 FVITSYLRVRIEKIEKFTLDIVQQDFE-----RSSDNMYLSHDELKYAKSYLKSI--DNH 143
+ + L + E ++KF ++++ +++ ++ S Y + DN
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQ 124
Query: 144 -FDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLR----AGKDV-ANVYIRD 188
F KY L + ++P V + +GK A
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWVALDVCLS 173
Score = 46.0 bits (108), Expect = 5e-06
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 51/202 (25%)
Query: 29 KVLETIKTAWKNEKLS-PEILPNKVEYIDCMLEQIKQMEENI-----EKLRKDDIRIEIH 82
+L I W + S ++ NK+ + +Q K+ +I E K + +H
Sbjct: 390 ILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 83 RMEIERIRFV----------------ITSYL---RVRIEKIEKFT------LDI--VQQD 115
R ++ S++ IE E+ T LD ++Q
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 116 FERSSDNMYLSHD------ELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEEN------KK 163
S S +LK+ K Y+ D +++ +N + L +EEN
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 164 LIKPDL---NTYVFLRAGKDVA 182
L++ L + +F A K V
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQ 588
Score = 39.1 bits (90), Expect = 0.001
Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 64/234 (27%)
Query: 23 NCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK-------- 74
NC S + VLE + +KL +I PN D ++ +LR+
Sbjct: 191 NCNSPETVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 75 ------DDIRIE--IHRMEIE-RIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYL 125
+++ + + +I + T + +V D + ++ L
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQV---------TDFLSAATTT---HISL 291
Query: 126 SHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKK-----------LIKPDLNTYVF 174
H + +KS+ KYL+ P +L E I+ L T+
Sbjct: 292 DHHSMTLTPDEVKSL---LLKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 175 LR--AGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDV--QLL 224
+ + I + S N + E + ++ ++ F + + LL
Sbjct: 347 WKHVNCDKLTT--IIESSLNVLEP---AEYRKM---FDRLSVFPPSAHIPTILL 392
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 6e-04
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 43 LSPEILPNKV-EYIDCMLEQIKQMEENIEKLRKDDIRIEIH----------RMEIERIRF 91
+S + P+KV ++ + + + E L +DI H + + +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDI----HALAAKLLQENDTTLVKTKE 121
Query: 92 VITSYLRVRIEKIEKFT-------LDIVQQDFER--------SSDNMYLSHDELK--YAK 134
+I +Y+ RI F V + + + + Y +EL+ Y +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLY-Q 178
Query: 135 SYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLR 176
+Y + + L +RT + +K+ LN +L
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Score = 28.9 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 13/50 (26%)
Query: 178 GKDVANVY--IRDMSENKEDEFVLDEGSQHILP-Y-ESIAEFVKNNDVQL 223
G D+ +D V + H Y SI + V NN V L
Sbjct: 1632 GMDLYKTSKAAQD---------VWNRADNHFKDTYGFSILDIVINNPVNL 1672
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA
replication; HET: DNA; 2.30A {Homo sapiens} SCOP:
a.278.1.1 PDB: 2eho_B*
Length = 149
Score = 33.8 bits (77), Expect = 0.016
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 61 QIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSS 120
Q E I+ + R R +YL R+ +I +
Sbjct: 44 QSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALR 103
Query: 121 DNMYLSHDELKYAKSYLKSI---------DNHFDKYLNMLPP 153
+ ++ +E+++ +Y +S+ D D +M PP
Sbjct: 104 FH--MAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPP 143
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.64
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 60 EQIKQ-MEENIEKLRKDDIRIEIHRMEI-ERIRFVITSYLRVRIEKIEKFTLD--IVQQD 115
E I++ EE ++L++ D ++ E E+ + + + + + E++EK ++ I +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 116 F--ERSSD 121
F + +D
Sbjct: 145 FYQQPDAD 152
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 29.9 bits (68), Expect = 0.64
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 66 EENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSD 121
I+ L K R +RFV TS E ++ L+ V+ +R+ +
Sbjct: 303 SAMIDALLKAGFGFYHDRWGPNVVRFV-TS-FATTAEDVDHL-LNQVRLAADRTQE 355
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.1 bits (66), Expect = 0.65
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 27 VQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK 74
V+++ ++ A ++ P LP VE E+ K + IE+L+
Sbjct: 9 VEEMERLLREASSILRVEPAKLPKTVER---FFEEWKDQRKEIERLKS 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.65
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 9/29 (31%)
Query: 60 EQIKQMEENIEKLRKDD------IR--IE 80
+ +K+++ ++ KL DD I+ +E
Sbjct: 20 QALKKLQASL-KLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 1.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 154 NLRTLEENKKLIKPD 168
L+ L+ + KL D
Sbjct: 21 ALKKLQASLKLYADD 35
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 29.5 bits (67), Expect = 0.92
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 169 LNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKN 218
LN G VA +Y R S K +E + ++++ +++ EFV +
Sbjct: 22 LN---VESRGYTVA-IYNRTTS--KTEEVFKEHQDKNLVFTKTLEEFVGS 65
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 29.1 bits (66), Expect = 1.1
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 169 LNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKN 218
LN G V+ ++ R K +E + + + ++PY ++ EFV++
Sbjct: 32 LN---IESRGYTVS-IFNRSRE--KTEEVIAENPGKKLVPYYTVKEFVES 75
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 1.1
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 185 YIRDMS--ENKEDEFVLDEGSQHIL----PYESIA 213
IR +S E + + +G + ++ P+E+IA
Sbjct: 144 LIRIVSGLELSDTK---QKGKKFLVIAYEPFENIA 175
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial
CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET:
FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Length = 277
Score = 28.5 bits (64), Expect = 1.7
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
I I EI +++ + + ++ +L +++ ER D Y+S E A+ +
Sbjct: 191 IAIQAEEIMKLKKQLYNIYAKHTKQ----SLQVIESAMER--DR-YMSPME---AQEF 238
>1hlo_A Protein (transcription factor MAX); transcriptional regulation,
DNA binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 26.9 bits (60), Expect = 1.8
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 39 KNEKLS-PEILPNKVEYIDCMLEQIKQMEENIEKLRK 74
+ EK S +IL EYI M + +++I+ L++
Sbjct: 42 QGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 28.4 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 184 VYIRDMSENKEDEFVLDEGS-QHILPYESIAEFVKN 218
Y R S K D F+ +E + I+ SI +F+
Sbjct: 38 AYNRTQS--KVDHFLANEAKGKSIIGATSIEDFISK 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 26.9 bits (60), Expect = 2.1
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 39 KNEKLS-PEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIR 90
NEK IL YI + + +++ + LRK R E + ++E++
Sbjct: 37 NNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK---RREQLKHKLEQLG 86
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP,
caseinolytic protease, protease TI, heat shock protein
F21.5, hydrolase; 1.90A {Escherichia coli} SCOP:
c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A
2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A
3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Length = 193
Score = 27.8 bits (63), Expect = 2.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
IEIH EI +++ + + + + +L+ +++D ER D +LS E A Y
Sbjct: 135 IEIHAREILKVKGRMNELMALHTGQ----SLEQIERDTER--DR-FLSAPE---AVEY 182
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A
{Streptococcus pneumoniae} SCOP: c.14.1.1
Length = 218
Score = 28.0 bits (63), Expect = 2.4
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
+ I + + R + L + +++ V D ER DN ++S E Y
Sbjct: 156 MAIAPEHLLKTRNTLEKILAENSGQ----SMEKVHADAER--DN-WMSAQE---TLEY 203
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.29A {Francisella tularensis subsp}
Length = 201
Score = 27.5 bits (62), Expect = 2.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
IEIH I RI+ + L + L+ + +D +R DN ++ DE AK+Y
Sbjct: 139 IEIHAKNILRIKDRLNKVLAHHTGQ----DLETIVKDTDR--DN-FMMADE---AKAY 186
>2f6i_A ATP-dependent CLP protease, putative; structural genomics,
structural genomics conso SGC, hydrolase; 2.45A
{Plasmodium falciparum} SCOP: c.14.1.1
Length = 215
Score = 27.2 bits (61), Expect = 3.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
IEI EI ++ ++ YL + T++ +++D +R D Y++ E AK Y
Sbjct: 147 IEIQTKEILYLKKLLYHYLSSFTNQ----TVETIEKDSDR--DY-YMNALE---AKQY 194
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic
protease, serin-protease, hydrolase; 2.10A
{Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V
3st9_A
Length = 203
Score = 27.1 bits (61), Expect = 3.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
IEI I + R + L R + +++ +Q+D +R DN +L+ +E AK Y
Sbjct: 136 IEIAANHILKTREKLNRILSERTGQ----SIEKIQKDTDR--DN-FLTAEE---AKEY 183
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 27.2 bits (61), Expect = 4.4
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 36 TAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKD 75
W E L LP V L +++ I++L D
Sbjct: 315 AGWMLEWL---TLPQMVTATGTSLLVAERLAAQIDRLGAD 351
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 25.8 bits (57), Expect = 4.7
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 39 KNEKLS-PEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIR 90
+ EK S +IL EYI M + +++I+ L++ + + ++ +
Sbjct: 32 QGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR---QNALLEQQVRALG 81
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer
evolving complex, water oxidizing complex, PSBQ, OEE3,
photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Length = 149
Score = 26.2 bits (57), Expect = 5.9
Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 60 EQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS 119
+I +++ I++ ++ ++ SYLR ++ + ++ +
Sbjct: 57 SEILNVKQFIDRKAWPSLQNDLRLR---------ASYLRYDLKTVISAKPKDEKKSLQEL 107
Query: 120 SDNMYLSHDELKYA 133
+ ++ S D L +A
Sbjct: 108 TSKLFSSIDNLDHA 121
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413}
SCOP: d.365.1.1
Length = 139
Score = 26.1 bits (57), Expect = 6.4
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 14/98 (14%)
Query: 114 QDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPN-------LRTLEENKKLI 165
F L E + + L I D L + ++T
Sbjct: 20 NKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAMKTYSHALGYE 79
Query: 166 K----PDLNTYVFLRAGKDVANVYIRDMSENKEDEFVL 199
P + V+++ Y+ S VL
Sbjct: 80 VPIDLPVVEGPVYIKLNGKNGLCYLD--SYAGHHRGVL 115
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 26.5 bits (59), Expect = 8.4
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 29 KVLETIKTAWKNEKLSPEI-----LPNKVEYIDC-----MLEQIKQME 66
V +++ WK + I LP++ EY++ + + I ++
Sbjct: 27 AVPRSVE--WKETAI--TILNQQKLPDETEYLELTTKEDVFDAIVTLK 70
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease,
endopept mycobacterium tuberculosis, ATP-dependent
protease; 2.6A {Mycobacterium tuberculosis} SCOP:
c.14.1.1 PDB: 2c8t_A 2ce3_A
Length = 208
Score = 26.0 bits (58), Expect = 8.5
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 79 IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSY 136
I I + I+ + + ++ ++ D +R D + + E A Y
Sbjct: 136 IAIQAEQFAVIKKEMFRLNAEFTGQ----PIERIEADSDR--DR-WFTAAE---ALEY 183
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine
salvage pathway, translation initiation,
oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP:
c.124.1.5
Length = 211
Score = 25.8 bits (57), Expect = 9.9
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 15/49 (30%)
Query: 31 LETIK---TAWKNEKLSPEI-----LPNKVEYIDC-----MLEQIKQME 66
LE I + +N + ++ LP +Y+ IK M+
Sbjct: 3 LEAIVFDRSEPENVSV--KVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQ 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.373
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,414,781
Number of extensions: 206669
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 74
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)